General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000517402
Gene ID:	ENSG00000005073
Gene Name:	HOXA11
Sequence (UNICHARACTER ENCODING)	GGAUCCGCUUCAAAGAGGCAGCUGCAGUGGAGAAUCAUGUUAAGCUCGGCUACUGCGGAGAGCCCAAGGUCCAACCCGUGCGCGAAGUGACCUUCAGAGAGUACGCCAUUGAGCCCGCCACUAAAUGGCACCCCCGCGGCAAUCUGGCCCACUGCUACUCCGCGGAGGAGCUCGUGCACAGAGЖCUGCCUGCAGGCGCCCAGCGCGGCCGGCGUGCCUGGCGACGUGCUGGCCAAGAGCUCGGCCAACGUCUACCACCACCCCACCCCCGCAGUCUCGUCCAAUUUCUAUAGCACCGUGGGCAGGAACGGCGUCCUGCCACAGGCUUUCGACCAGUUUUUCGAGACAGCCUACGGCACCCCGGAAAACCUCGCCUCCUCCGACUACCCCGGGGACAAGAGCGCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCUCCGCGGCGGCGGCGGCGGCUGCAACGGGCGCGCCGGCAACUUCAAGUUCGGACAGCGGCGGCGGCGGCGGCUGCCGGGAGACGGCGGCGGCAGCAGAGGAGAAAGAGCGGCGGCGGCGCCCCGAGAGCAGCAGCAGCCCCGAGUCGUCUUCCGGCCACACUGAGGACAAGGCCGGCGGCUCCAGUGGCCAACGCACCCGCAAAAAGCGCUGCCCCUAUACCAAGUACCAGAUCCGAGAGCUGGAACGGGAGUUCUUCUUCAGCGUCUACAUUAACAAAGAGAAGCGCCUGCAACUGUCCCGCAUGCUCAACCUCACUGAUCGUCAAGUCAAAAUCUGGUUUCAGAACAGGAGAAUGAAGGAAAAAAAAAUUAACAGAGЖCCGUUUACAGUACUACUCAGCAAAUCCACUCCUCUAAGЖCUCCAGCGGCUGGAAUUGGGUGGGGGGCUUCAUACACAUGAGAUAAUAUGCAGAUUUUGCCCUUGACAAAGUCAAGCCACAUGGUGЖCUUUUGAAAAGAGGUGUGCAAGAGAGGGAUGCAUGGAGAUAGCCCCACAGGAGGUGGUCUGGGЖCUCUCUUGAUUAAGAUCUCAGUGGUUAAGAUUCCUAAUAAUCAUUGGAUUCUGAGAGCUGUGCAUCAGCUAGAAUGACAGGUUUGGGACCCCUGGUGGUUCACUCUUGGAGCCUGCAGAGCUGCGGGCUGGGUGUGGUCUCCACUGGGGAUUGGGCCCCUGCCAGACCCCCUGGAGACUAACCCCACCACACCCPCCCUCUACUGGGAGCCUACCCACCCCCAGGACCCCUGAGUAAAAAAGCUGUGUGCUCUCCAAGCCCAGUUCAGCUUGGGGACAGGGGCAGGAGGAAGGGGUAGGAUUACUAGGUGCCCAGAAUGAGGCUGCUUUCCAAAGCCAAUGUGAACAGCGGCUGGЖCUUGGAGGUAGCUUUGAGGUGGAAGAGGGCUGCAAAUCCUUGUGGGAAAAGAAAUCUAUGAUUCCAGGUGGCAUCAGUGUCUUUCCACUCCPCCUAGCCACCCACCACACUGAUCCAGCCCUGAGUUCCUAGCCACCGCCPCCUACAGCCCACCUGGCUUUUCUUUCUACCAAAUGAGGGUCUUGGUUCCAGCCUGCCACUCAGGCCCAAAGCCUCGACACAGAGUGGЖCUGUUCCCUGAGGUGGGAGAUGUGGAAAAGCCAAGAGGCUGCAGCCAGGCCACUGGCCCCUGAGAUCUCUGCAGGAAAUGGCUGUGGAGUGUGGCAGUUUGGCAAACUCUCCACCACACGUAAUGAAACUUGGAUPUGCUCAGUGUCUGGCUGCAGAGCAGUGGGCCUGGCCAGCAGGUCCCCAGCUUUGGCUAUGAGGGCCUUGAGUCCCCCAAAACACCGGGUUCCAGCACCACACUCAGCCCUCAUUGGCUCUUGAACUGAGCUUGGAAGCUUCUGGUGACCUUCCAAGAGCCUGAGAGUGAGGUGGAAUUAUUUUAAAAGAUAAAUAUUAUAUUAUAUAUAUAUAUAUUUCCCUGAAGGAACCAAAGCGAAUUUUAAAAGAUGCAAUGUAGAGGGGAAAAGAGAUGAUGAAAAUAUUUAAAGGCCCUAUCUGUUUACAGUGUUCCGUGGUUAAACUCGCUCACUGCUAAGAAUAUUUGAAUGUAUGCUUCAUACAGGGAUGGUGUUCAAAAAACUUGUAAAUAAAGGAACCAUAAUCAAUUUUC
Sequence (SHORT NAMES ENCODING)	GGAUCCGCUUCAAAGAGGCAGCUGCAGUGGAGAAUCAUGUUAAGCUCGGCUACUGCGGAGAGCCCAAGGUCCAACCCGUGCGCGAAGUGACCUUCAGAGAGUACGCCAUUGAGCCCGCCACUAAAUGGCACCCCCGCGGCAAUCUGGCCCACUGCUACUCCGCGGAGGAGCUCGUGCACAGAGm6ACUGCCUGCAGGCGCCCAGCGCGGCCGGCGUGCCUGGCGACGUGCUGGCCAAGAGCUCGGCCAACGUCUACCACCACCCCACCCCCGCAGUCUCGUCCAAUUUCUAUAGCACCGUGGGCAGGAACGGCGUCCUGCCACAGGCUUUCGACCAGUUUUUCGAGACAGCCUACGGCACCCCGGAAAACCUCGCCUCCUCCGACUACCCCGGGGACAAGAGCGCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCUCCGCGGCGGCGGCGGCGGCUGCAACGGGCGCGCCGGCAACUUCAAGUUCGGACAGCGGCGGCGGCGGCGGCUGCCGGGAGACGGCGGCGGCAGCAGAGGAGAAAGAGCGGCGGCGGCGCCCCGAGAGCAGCAGCAGCCCCGAGUCGUCUUCCGGCCACACUGAGGACAAGGCCGGCGGCUCCAGUGGCCAACGCACCCGCAAAAAGCGCUGCCCCUAUACCAAGUACCAGAUCCGAGAGCUGGAACGGGAGUUCUUCUUCAGCGUCUACAUUAACAAAGAGAAGCGCCUGCAACUGUCCCGCAUGCUCAACCUCACUGAUCGUCAAGUCAAAAUCUGGUUUCAGAACAGGAGAAUGAAGGAAAAAAAAAUUAACAGAGm6ACCGUUUACAGUACUACUCAGCAAAUCCACUCCUCUAAGm6ACUCCAGCGGCUGGAAUUGGGUGGGGGGCUUCAUACACAUGAGAUAAUAUGCAGAUUUUGCCCUUGACAAAGUCAAGCCACAUGGUGm6ACUUUUGAAAAGAGGUGUGCAAGAGAGGGAUGCAUGGAGAUAGCCCCACAGGAGGUGGUCUGGGm6ACUCUCUUGAUUAAGAUCUCAGUGGUUAAGAUUCCUAAUAAUCAUUGGAUUCUGAGAGCUGUGCAUCAGCUAGAAUGACAGGUUUGGGACCCCUGGUGGUUCACUCUUGGAGCCUGCAGAGCUGCGGGCUGGGUGUGGUCUCCACUGGGGAUUGGGCCCCUGCCAGACCCCCUGGAGACUAACCCCACCACACCCYCCCUCUACUGGGAGCCUACCCACCCCCAGGACCCCUGAGUAAAAAAGCUGUGUGCUCUCCAAGCCCAGUUCAGCUUGGGGACAGGGGCAGGAGGAAGGGGUAGGAUUACUAGGUGCCCAGAAUGAGGCUGCUUUCCAAAGCCAAUGUGAACAGCGGCUGGm6ACUUGGAGGUAGCUUUGAGGUGGAAGAGGGCUGCAAAUCCUUGUGGGAAAAGAAAUCUAUGAUUCCAGGUGGCAUCAGUGUCUUUCCACUCCYCCUAGCCACCCACCACACUGAUCCAGCCCUGAGUUCCUAGCCACCGCCYCCUACAGCCCACCUGGCUUUUCUUUCUACCAAAUGAGGGUCUUGGUUCCAGCCUGCCACUCAGGCCCAAAGCCUCGACACAGAGUGGm6ACUGUUCCCUGAGGUGGGAGAUGUGGAAAAGCCAAGAGGCUGCAGCCAGGCCACUGGCCCCUGAGAUCUCUGCAGGAAAUGGCUGUGGAGUGUGGCAGUUUGGCAAACUCUCCACCACACGUAAUGAAACUUGGAUYUGCUCAGUGUCUGGCUGCAGAGCAGUGGGCCUGGCCAGCAGGUCCCCAGCUUUGGCUAUGAGGGCCUUGAGUCCCCCAAAACACCGGGUUCCAGCACCACACUCAGCCCUCAUUGGCUCUUGAACUGAGCUUGGAAGCUUCUGGUGACCUUCCAAGAGCCUGAGAGUGAGGUGGAAUUAUUUUAAAAGAUAAAUAUUAUAUUAUAUAUAUAUAUAUUUCCCUGAAGGAACCAAAGCGAAUUUUAAAAGAUGCAAUGUAGAGGGGAAAAGAGAUGAUGAAAAUAUUUAAAGGCCCUAUCUGUUUACAGUGUUCCGUGGUUAAACUCGCUCACUGCUAAGAAUAUUUGAAUGUAUGCUUCAUACAGGGAUGGUGUUCAAAAAACUUGUAAAUAAAGGAACCAUAAUCAAUUUUC
Sequence (MODOMICS CODE ENCODING)	GGAUCCGCUUCAAAGAGGCAGCUGCAGUGGAGAAUCAUGUUAAGCUCGGCUACUGCGGAGAGCCCAAGGUCCAACCCGUGCGCGAAGUGACCUUCAGAGAGUACGCCAUUGAGCCCGCCACUAAAUGGCACCCCCGCGGCAAUCUGGCCCACUGCUACUCCGCGGAGGAGCUCGUGCACAGAG2000000006ACUGCCUGCAGGCGCCCAGCGCGGCCGGCGUGCCUGGCGACGUGCUGGCCAAGAGCUCGGCCAACGUCUACCACCACCCCACCCCCGCAGUCUCGUCCAAUUUCUAUAGCACCGUGGGCAGGAACGGCGUCCUGCCACAGGCUUUCGACCAGUUUUUCGAGACAGCCUACGGCACCCCGGAAAACCUCGCCUCCUCCGACUACCCCGGGGACAAGAGCGCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCUCCGCGGCGGCGGCGGCGGCUGCAACGGGCGCGCCGGCAACUUCAAGUUCGGACAGCGGCGGCGGCGGCGGCUGCCGGGAGACGGCGGCGGCAGCAGAGGAGAAAGAGCGGCGGCGGCGCCCCGAGAGCAGCAGCAGCCCCGAGUCGUCUUCCGGCCACACUGAGGACAAGGCCGGCGGCUCCAGUGGCCAACGCACCCGCAAAAAGCGCUGCCCCUAUACCAAGUACCAGAUCCGAGAGCUGGAACGGGAGUUCUUCUUCAGCGUCUACAUUAACAAAGAGAAGCGCCUGCAACUGUCCCGCAUGCUCAACCUCACUGAUCGUCAAGUCAAAAUCUGGUUUCAGAACAGGAGAAUGAAGGAAAAAAAAAUUAACAGAG2000000006ACCGUUUACAGUACUACUCAGCAAAUCCACUCCUCUAAG2000000006ACUCCAGCGGCUGGAAUUGGGUGGGGGGCUUCAUACACAUGAGAUAAUAUGCAGAUUUUGCCCUUGACAAAGUCAAGCCACAUGGUG2000000006ACUUUUGAAAAGAGGUGUGCAAGAGAGGGAUGCAUGGAGAUAGCCCCACAGGAGGUGGUCUGGG2000000006ACUCUCUUGAUUAAGAUCUCAGUGGUUAAGAUUCCUAAUAAUCAUUGGAUUCUGAGAGCUGUGCAUCAGCUAGAAUGACAGGUUUGGGACCCCUGGUGGUUCACUCUUGGAGCCUGCAGAGCUGCGGGCUGGGUGUGGUCUCCACUGGGGAUUGGGCCCCUGCCAGACCCCCUGGAGACUAACCCCACCACACCC2000000009UCCCUCUACUGGGAGCCUACCCACCCCCAGGACCCCUGAGUAAAAAAGCUGUGUGCUCUCCAAGCCCAGUUCAGCUUGGGGACAGGGGCAGGAGGAAGGGGUAGGAUUACUAGGUGCCCAGAAUGAGGCUGCUUUCCAAAGCCAAUGUGAACAGCGGCUGG2000000006ACUUGGAGGUAGCUUUGAGGUGGAAGAGGGCUGCAAAUCCUUGUGGGAAAAGAAAUCUAUGAUUCCAGGUGGCAUCAGUGUCUUUCCACUCC2000000009UCCUAGCCACCCACCACACUGAUCCAGCCCUGAGUUCCUAGCCACCGCC2000000009UCCUACAGCCCACCUGGCUUUUCUUUCUACCAAAUGAGGGUCUUGGUUCCAGCCUGCCACUCAGGCCCAAAGCCUCGACACAGAGUGG2000000006ACUGUUCCCUGAGGUGGGAGAUGUGGAAAAGCCAAGAGGCUGCAGCCAGGCCACUGGCCCCUGAGAUCUCUGCAGGAAAUGGCUGUGGAGUGUGGCAGUUUGGCAAACUCUCCACCACACGUAAUGAAACUUGGAU2000000009UUGCUCAGUGUCUGGCUGCAGAGCAGUGGGCCUGGCCAGCAGGUCCCCAGCUUUGGCUAUGAGGGCCUUGAGUCCCCCAAAACACCGGGUUCCAGCACCACACUCAGCCCUCAUUGGCUCUUGAACUGAGCUUGGAAGCUUCUGGUGACCUUCCAAGAGCCUGAGAGUGAGGUGGAAUUAUUUUAAAAGAUAAAUAUUAUAUUAUAUAUAUAUAUAUUUCCCUGAAGGAACCAAAGCGAAUUUUAAAAGAUGCAAUGUAGAGGGGAAAAGAGAUGAUGAAAAUAUUUAAAGGCCCUAUCUGUUUACAGUGUUCCGUGGUUAAACUCGCUCACUGCUAAGAAUAUUUGAAUGUAUGCUUCAUACAGGGAUGGUGUUCAAAAAACUUGUAAAUAAAGGAACCAUAAUCAAUUUUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	184	814	853	940	1004	1199	1360	1452	1501	1589	1725
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y	Y	m6A	Y
Genomic Coordinates	7:27184870:-	7:27182833:-	7:27182794:-	7:27182707:-	7:27182643:-	7:27182448:-	7:27182287:-	7:27182195:-	7:27182146:-	7:27182058:-	7:27181922:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5Nnepx5V7yHo aHkqKEJkRYyb aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VyCX26p5UBRL Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR V5PvfiKsgFMd VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G JASnTTw2HeNE ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn JASnTTw2HeNE BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8