Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000655278
Gene ID: ENSG00000242474
Gene Name: LINC03015
Sequence (UNICHARACTER ENCODING) GGCCCAAGACGACGCCAAGGGAGCGGACGGGCGGGGAGGAGGUGGCCUCUGCGCAGGCGCAGAGAGGAGCGAGCGACUCCUGCGCAAGCGCAGAGUGAAGGGCCGGGAACAGUGGAGGGUGCGAGGAAGACAAUGGGGGAGGACCCUGAGGCGGCCUCUGUGAGCCGACAGGAACACGUGGUCGAUCAGAGAGAGACUCGAGGUUCGUGAACGGAUGGGGAGGACCCUGAAAAGCACUGUGGAAUACAGGUUUCUAGUAACUUCAAAAUCACAUCAUUUGGACUGGGUAAGAAUUGCUGAAACUUUAAUGAAAAGACUGACUGGCUUAUAAAACUGCUAACCCAAAUAGAAUAAAAAUUAAUUGAAUACCGAGGAAAUGCUUCACCAGGUUUGCAUACUUAAUCAGCCUAUACUGAAAUUGUUUAGAUAUACAAUUUGAAUGAACUCCAUGGUCUAAGUCAAAUUACCUGUGAUAACCCAUCAGUUAUCCAUGCUAUGUGCCCAAUUUGGAGAAACAACUGGCACCCAAGAGGACAUAAGUCCGAUGUUAAGCAUGGACUCAUGGAGAACCAAGAUGGCUGCCUUGUCCUUCGUGAGUCCUUAAAGCUUUUGUUAUUAAAAGUUAUGCAUUCCAUGACUCAUCCUGGAAAAGAUAAAAUGAUCCAAAUUAAAUAUGUUGGUGUGGUGACUUACAGAUUGUUAAAAUAGUUUAUAAACAAUGUUUAGUUUGUCAAACCCAUACUCCUGGGAAGUCAAUCAAAGCUUCAUGUACAUUUGGCUACCUGAUGAGGCAUUUAAACAUUUAUAAAGGGGUUUCAUUCAGUUGUCAUUUUCAAUGUAUGUGUUCUGGUUGUACUAAAGCUUUCCCAUGCAGGAGGGCUAAUGUUAUAACAGUAGAUUACUAUGUAUCAGUGUAUUUUCACCAGGUAAAGAGCUUUUUAUGGUUCACUGAGGACAAUCAACCCCUUCACAAUCUAGAACCCAAAGAUGGGAUCUUCUGAGAACAUCAGAGAAACGCUGCCCUUGGCAUCAUCACUGCAACAAAACAUCAGGAUCUUGAЖCCUUGGGGUCAUAAUCUCACAACUGAGCAGGGUCACUCUUGGAЖCUCUACAUCCAUUGAAACCCUUAAGGUAAAGCUAAUCAGGGAAGUUUCUCCCCAGAAGAAGAUGGCAUCCUUGAUGUGAGCAGCUCUUUCUGAAGAUCAUGGAUCAAGACUUCUUACUAUCAUGAGЖCUCUUAUCUUUGAAUGUUUUUCCGUUGCUUCCGCCUCUGUGAACAACAGAAGUGAGAAGGGGGUCUGUUUUGUGCACUUAUGGGGUAUACUUUUAUUUGUGAAGGGCUUUGCAGCCAGCUUUAUACAUGGAUAAUCUUAUAACUUGAUAGAUAAAGAUGAAGGCCCAGUGUAUCAUAGGUGAGAAACUUCAAUGGUACAUAUGGUGCCUCAUAAUCAUUCAGAAGCAGAACAUUGGUUCACUCCUCUUAACCCACAGCAUGGGUUAAAGAGACCAUUGCCAAGAGGCCUUCCCUCUUCUAGAAGGGCAUCAUUUGUUAGGUCCUUUUUCCAUGGUUUGGAAUUAAAAAGGCAAUGACUAGAAACAUAUCCCUCAUGGUAGACUCUGUAGCAGAUUCUACUGUAAAGGCUACACAACAGAUGUUAAAUUCUCUUGUGAAAGUUAUGCUAAAAAAUAGAAUUGGCUAAACAGGAAAGUACCUGUGCAGAUGCUGGCACUUAAGGCCUAUGGAGAAAACAUCAGGUGUUAUAGAGAGUCUGUUGUAGGGAAUUAACGAAAAGACCACUGAGUUAAGUCAAAGAAUGGUCUAUUUGAGUUUAGGUGGUCUGGUUUAUGGGGACCCUGGCUAAGGAGCAUACUCCAAAUUCUUGGUGUUAACCCUCUCAGUAGUCAUAAGAAUAGUCUCCCUGGUGCACUGUAUUCUCUCAAAGGUUUUAAAUGUUUGCAUGAAGCCAUCUUUAGAACGUCAGAUGGUCUCUCUUCAACUGGAAUGACAAGAGCUGAAAGAAAUGUGUGACCACGAGGACACCGAAACCGAUGAGUGACAUGCUGAGЖCUGGAAAUCCAAAAUGAUAGUAACGGAGAGUGGCGCUAACAUCCUAAGUUUUGGUCACACUCUUGCCUAAGUGACAACCUGACAAAGGGGGAAUUUUUUAAACAAAAUGAUGGGAGGCCAUUGUUUUGGЖCUGAGCACUAGGUCCCAACAGACCAAACCGAACCAAAAUGGCAUCAUUCGUGCUAAAUGUGACAUAAUCGAAUUAAGЖCUUUAAGGAAACACAUGGGUCCUAGAAUAGACCAGGUUUUGUUUUUCUCUUGCAAACAGGЖCUUUCCAGCAUAAGGUGGUAUCCUCAACUCAGUCCUUGUUCCUACCUUUGCAAAACUCACUGUUCUGCUUCCUAGUGGGUUUCAAGACCAAUGGUGACAGUGACAUCAAUAACUCAAGUUUCGAUCAAUCUCUCAAAACUGAUAAAAUGACCAAAAAGGGGGAAUUGUUAAAGCGAACUAAAUAUGGCCUGAGAAGGACUCCGUACUUCUGUAUUGGAGUCCCUGUGAACAAЖCUGAGCCUAACUUAAUAGGUAGACAAGAUUGAAAACCUAAAUUAGGAGUAUGUACCUGUCACAAUUGCUGAGUCUCGGCCAGUCCCAGCAGCCGUACUUCAAUCACUCAUACACUGCUGAAUGUUCAAACUGUGUGUAAAUAAGGCAAAUGCCAACCUGUAACUAAUCCAGGUGUUUCUCUACCUCACUUCCCUUUUUUUGUCUAUAAAUCUUCCACCACGUGGCUGCACUGGAGUCUCUCUGAAUCUGCUGUAAUUCUGGGGGCUGCCCGAUGUGCAAAUCAUUCAUUGCUCAAUUAAACUCCUUUAAAUUUAAUUCAGCUGAAGUUUUCUUUUAACAAGAGUGAGAUAAGAAUCUGUGUUCUUAUCCCCCAGAAUGGACAAAUCAGUAGCGUUCCUUGUCAUUCUUUUGUGGCUGGUUUCACGUAAAUAUUUUGUGUGUAUGAUAAUAGAAUUUGAUUUUAA
Sequence (SHORT NAMES ENCODING) GGCCCAAGACGACGCCAAGGGAGCGGACGGGCGGGGAGGAGGUGGCCUCUGCGCAGGCGCAGAGAGGAGCGAGCGACUCCUGCGCAAGCGCAGAGUGAAGGGCCGGGAACAGUGGAGGGUGCGAGGAAGACAAUGGGGGAGGACCCUGAGGCGGCCUCUGUGAGCCGACAGGAACACGUGGUCGAUCAGAGAGAGACUCGAGGUUCGUGAACGGAUGGGGAGGACCCUGAAAAGCACUGUGGAAUACAGGUUUCUAGUAACUUCAAAAUCACAUCAUUUGGACUGGGUAAGAAUUGCUGAAACUUUAAUGAAAAGACUGACUGGCUUAUAAAACUGCUAACCCAAAUAGAAUAAAAAUUAAUUGAAUACCGAGGAAAUGCUUCACCAGGUUUGCAUACUUAAUCAGCCUAUACUGAAAUUGUUUAGAUAUACAAUUUGAAUGAACUCCAUGGUCUAAGUCAAAUUACCUGUGAUAACCCAUCAGUUAUCCAUGCUAUGUGCCCAAUUUGGAGAAACAACUGGCACCCAAGAGGACAUAAGUCCGAUGUUAAGCAUGGACUCAUGGAGAACCAAGAUGGCUGCCUUGUCCUUCGUGAGUCCUUAAAGCUUUUGUUAUUAAAAGUUAUGCAUUCCAUGACUCAUCCUGGAAAAGAUAAAAUGAUCCAAAUUAAAUAUGUUGGUGUGGUGACUUACAGAUUGUUAAAAUAGUUUAUAAACAAUGUUUAGUUUGUCAAACCCAUACUCCUGGGAAGUCAAUCAAAGCUUCAUGUACAUUUGGCUACCUGAUGAGGCAUUUAAACAUUUAUAAAGGGGUUUCAUUCAGUUGUCAUUUUCAAUGUAUGUGUUCUGGUUGUACUAAAGCUUUCCCAUGCAGGAGGGCUAAUGUUAUAACAGUAGAUUACUAUGUAUCAGUGUAUUUUCACCAGGUAAAGAGCUUUUUAUGGUUCACUGAGGACAAUCAACCCCUUCACAAUCUAGAACCCAAAGAUGGGAUCUUCUGAGAACAUCAGAGAAACGCUGCCCUUGGCAUCAUCACUGCAACAAAACAUCAGGAUCUUGAm6ACCUUGGGGUCAUAAUCUCACAACUGAGCAGGGUCACUCUUGGAm6ACUCUACAUCCAUUGAAACCCUUAAGGUAAAGCUAAUCAGGGAAGUUUCUCCCCAGAAGAAGAUGGCAUCCUUGAUGUGAGCAGCUCUUUCUGAAGAUCAUGGAUCAAGACUUCUUACUAUCAUGAGm6ACUCUUAUCUUUGAAUGUUUUUCCGUUGCUUCCGCCUCUGUGAACAACAGAAGUGAGAAGGGGGUCUGUUUUGUGCACUUAUGGGGUAUACUUUUAUUUGUGAAGGGCUUUGCAGCCAGCUUUAUACAUGGAUAAUCUUAUAACUUGAUAGAUAAAGAUGAAGGCCCAGUGUAUCAUAGGUGAGAAACUUCAAUGGUACAUAUGGUGCCUCAUAAUCAUUCAGAAGCAGAACAUUGGUUCACUCCUCUUAACCCACAGCAUGGGUUAAAGAGACCAUUGCCAAGAGGCCUUCCCUCUUCUAGAAGGGCAUCAUUUGUUAGGUCCUUUUUCCAUGGUUUGGAAUUAAAAAGGCAAUGACUAGAAACAUAUCCCUCAUGGUAGACUCUGUAGCAGAUUCUACUGUAAAGGCUACACAACAGAUGUUAAAUUCUCUUGUGAAAGUUAUGCUAAAAAAUAGAAUUGGCUAAACAGGAAAGUACCUGUGCAGAUGCUGGCACUUAAGGCCUAUGGAGAAAACAUCAGGUGUUAUAGAGAGUCUGUUGUAGGGAAUUAACGAAAAGACCACUGAGUUAAGUCAAAGAAUGGUCUAUUUGAGUUUAGGUGGUCUGGUUUAUGGGGACCCUGGCUAAGGAGCAUACUCCAAAUUCUUGGUGUUAACCCUCUCAGUAGUCAUAAGAAUAGUCUCCCUGGUGCACUGUAUUCUCUCAAAGGUUUUAAAUGUUUGCAUGAAGCCAUCUUUAGAACGUCAGAUGGUCUCUCUUCAACUGGAAUGACAAGAGCUGAAAGAAAUGUGUGACCACGAGGACACCGAAACCGAUGAGUGACAUGCUGAGm6ACUGGAAAUCCAAAAUGAUAGUAACGGAGAGUGGCGCUAACAUCCUAAGUUUUGGUCACACUCUUGCCUAAGUGACAACCUGACAAAGGGGGAAUUUUUUAAACAAAAUGAUGGGAGGCCAUUGUUUUGGm6ACUGAGCACUAGGUCCCAACAGACCAAACCGAACCAAAAUGGCAUCAUUCGUGCUAAAUGUGACAUAAUCGAAUUAAGm6ACUUUAAGGAAACACAUGGGUCCUAGAAUAGACCAGGUUUUGUUUUUCUCUUGCAAACAGGm6ACUUUCCAGCAUAAGGUGGUAUCCUCAACUCAGUCCUUGUUCCUACCUUUGCAAAACUCACUGUUCUGCUUCCUAGUGGGUUUCAAGACCAAUGGUGACAGUGACAUCAAUAACUCAAGUUUCGAUCAAUCUCUCAAAACUGAUAAAAUGACCAAAAAGGGGGAAUUGUUAAAGCGAACUAAAUAUGGCCUGAGAAGGACUCCGUACUUCUGUAUUGGAGUCCCUGUGAACAAm6ACUGAGCCUAACUUAAUAGGUAGACAAGAUUGAAAACCUAAAUUAGGAGUAUGUACCUGUCACAAUUGCUGAGUCUCGGCCAGUCCCAGCAGCCGUACUUCAAUCACUCAUACACUGCUGAAUGUUCAAACUGUGUGUAAAUAAGGCAAAUGCCAACCUGUAACUAAUCCAGGUGUUUCUCUACCUCACUUCCCUUUUUUUGUCUAUAAAUCUUCCACCACGUGGCUGCACUGGAGUCUCUCUGAAUCUGCUGUAAUUCUGGGGGCUGCCCGAUGUGCAAAUCAUUCAUUGCUCAAUUAAACUCCUUUAAAUUUAAUUCAGCUGAAGUUUUCUUUUAACAAGAGUGAGAUAAGAAUCUGUGUUCUUAUCCCCCAGAAUGGACAAAUCAGUAGCGUUCCUUGUCAUUCUUUUGUGGCUGGUUUCACGUAAAUAUUUUGUGUGUAUGAUAAUAGAAUUUGAUUUUAA
Sequence (MODOMICS CODE ENCODING) GGCCCAAGACGACGCCAAGGGAGCGGACGGGCGGGGAGGAGGUGGCCUCUGCGCAGGCGCAGAGAGGAGCGAGCGACUCCUGCGCAAGCGCAGAGUGAAGGGCCGGGAACAGUGGAGGGUGCGAGGAAGACAAUGGGGGAGGACCCUGAGGCGGCCUCUGUGAGCCGACAGGAACACGUGGUCGAUCAGAGAGAGACUCGAGGUUCGUGAACGGAUGGGGAGGACCCUGAAAAGCACUGUGGAAUACAGGUUUCUAGUAACUUCAAAAUCACAUCAUUUGGACUGGGUAAGAAUUGCUGAAACUUUAAUGAAAAGACUGACUGGCUUAUAAAACUGCUAACCCAAAUAGAAUAAAAAUUAAUUGAAUACCGAGGAAAUGCUUCACCAGGUUUGCAUACUUAAUCAGCCUAUACUGAAAUUGUUUAGAUAUACAAUUUGAAUGAACUCCAUGGUCUAAGUCAAAUUACCUGUGAUAACCCAUCAGUUAUCCAUGCUAUGUGCCCAAUUUGGAGAAACAACUGGCACCCAAGAGGACAUAAGUCCGAUGUUAAGCAUGGACUCAUGGAGAACCAAGAUGGCUGCCUUGUCCUUCGUGAGUCCUUAAAGCUUUUGUUAUUAAAAGUUAUGCAUUCCAUGACUCAUCCUGGAAAAGAUAAAAUGAUCCAAAUUAAAUAUGUUGGUGUGGUGACUUACAGAUUGUUAAAAUAGUUUAUAAACAAUGUUUAGUUUGUCAAACCCAUACUCCUGGGAAGUCAAUCAAAGCUUCAUGUACAUUUGGCUACCUGAUGAGGCAUUUAAACAUUUAUAAAGGGGUUUCAUUCAGUUGUCAUUUUCAAUGUAUGUGUUCUGGUUGUACUAAAGCUUUCCCAUGCAGGAGGGCUAAUGUUAUAACAGUAGAUUACUAUGUAUCAGUGUAUUUUCACCAGGUAAAGAGCUUUUUAUGGUUCACUGAGGACAAUCAACCCCUUCACAAUCUAGAACCCAAAGAUGGGAUCUUCUGAGAACAUCAGAGAAACGCUGCCCUUGGCAUCAUCACUGCAACAAAACAUCAGGAUCUUGA2000000006ACCUUGGGGUCAUAAUCUCACAACUGAGCAGGGUCACUCUUGGA2000000006ACUCUACAUCCAUUGAAACCCUUAAGGUAAAGCUAAUCAGGGAAGUUUCUCCCCAGAAGAAGAUGGCAUCCUUGAUGUGAGCAGCUCUUUCUGAAGAUCAUGGAUCAAGACUUCUUACUAUCAUGAG2000000006ACUCUUAUCUUUGAAUGUUUUUCCGUUGCUUCCGCCUCUGUGAACAACAGAAGUGAGAAGGGGGUCUGUUUUGUGCACUUAUGGGGUAUACUUUUAUUUGUGAAGGGCUUUGCAGCCAGCUUUAUACAUGGAUAAUCUUAUAACUUGAUAGAUAAAGAUGAAGGCCCAGUGUAUCAUAGGUGAGAAACUUCAAUGGUACAUAUGGUGCCUCAUAAUCAUUCAGAAGCAGAACAUUGGUUCACUCCUCUUAACCCACAGCAUGGGUUAAAGAGACCAUUGCCAAGAGGCCUUCCCUCUUCUAGAAGGGCAUCAUUUGUUAGGUCCUUUUUCCAUGGUUUGGAAUUAAAAAGGCAAUGACUAGAAACAUAUCCCUCAUGGUAGACUCUGUAGCAGAUUCUACUGUAAAGGCUACACAACAGAUGUUAAAUUCUCUUGUGAAAGUUAUGCUAAAAAAUAGAAUUGGCUAAACAGGAAAGUACCUGUGCAGAUGCUGGCACUUAAGGCCUAUGGAGAAAACAUCAGGUGUUAUAGAGAGUCUGUUGUAGGGAAUUAACGAAAAGACCACUGAGUUAAGUCAAAGAAUGGUCUAUUUGAGUUUAGGUGGUCUGGUUUAUGGGGACCCUGGCUAAGGAGCAUACUCCAAAUUCUUGGUGUUAACCCUCUCAGUAGUCAUAAGAAUAGUCUCCCUGGUGCACUGUAUUCUCUCAAAGGUUUUAAAUGUUUGCAUGAAGCCAUCUUUAGAACGUCAGAUGGUCUCUCUUCAACUGGAAUGACAAGAGCUGAAAGAAAUGUGUGACCACGAGGACACCGAAACCGAUGAGUGACAUGCUGAG2000000006ACUGGAAAUCCAAAAUGAUAGUAACGGAGAGUGGCGCUAACAUCCUAAGUUUUGGUCACACUCUUGCCUAAGUGACAACCUGACAAAGGGGGAAUUUUUUAAACAAAAUGAUGGGAGGCCAUUGUUUUGG2000000006ACUGAGCACUAGGUCCCAACAGACCAAACCGAACCAAAAUGGCAUCAUUCGUGCUAAAUGUGACAUAAUCGAAUUAAG2000000006ACUUUAAGGAAACACAUGGGUCCUAGAAUAGACCAGGUUUUGUUUUUCUCUUGCAAACAGG2000000006ACUUUCCAGCAUAAGGUGGUAUCCUCAACUCAGUCCUUGUUCCUACCUUUGCAAAACUCACUGUUCUGCUUCCUAGUGGGUUUCAAGACCAAUGGUGACAGUGACAUCAAUAACUCAAGUUUCGAUCAAUCUCUCAAAACUGAUAAAAUGACCAAAAAGGGGGAAUUGUUAAAGCGAACUAAAUAUGGCCUGAGAAGGACUCCGUACUUCUGUAUUGGAGUCCCUGUGAACAA2000000006ACUGAGCCUAACUUAAUAGGUAGACAAGAUUGAAAACCUAAAUUAGGAGUAUGUACCUGUCACAAUUGCUGAGUCUCGGCCAGUCCCAGCAGCCGUACUUCAAUCACUCAUACACUGCUGAAUGUUCAAACUGUGUGUAAAUAAGGCAAAUGCCAACCUGUAACUAAUCCAGGUGUUUCUCUACCUCACUUCCCUUUUUUUGUCUAUAAAUCUUCCACCACGUGGCUGCACUGGAGUCUCUCUGAAUCUGCUGUAAUUCUGGGGGCUGCCCGAUGUGCAAAUCAUUCAUUGCUCAAUUAAACUCCUUUAAAUUUAAUUCAGCUGAAGUUUUCUUUUAACAAGAGUGAGAUAAGAAUCUGUGUUCUUAUCCCCCAGAAUGGACAAAUCAGUAGCGUUCCUUGUCAUUCUUUUGUGGCUGGUUUCACGUAAAUAUUUUGUGUGUAUGAUAAUAGAAUUUGAUUUUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1061 1105 1232 2065 2195 2273 2334 2567
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 7:147757:- 7:147713:- 7:147586:- 7:146753:- 7:146623:- 7:146545:- 7:146484:- 7:146251:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
Lny8GcCeVGc9
UKen6WEino9G
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
Yfn77uLS5tv8
msuJfBpJvM5H
Lny8GcCeVGc9
Yfn77uLS5tv8