Modomics - A Database of RNA Modifications

The molecule is shown in a ball-and-stick representation with the following colors for atoms :
⬤ Hydrogen (H): white ⬤ Carbon (C): gray ⬤ Oxygen (O): red ⬤ Phosphorus (P): orange ⬤ Nitrogen (N): blue ⬤ Selenium (Se): gold ⬤ Sulfur (S): yellow

Summary

Full nameunknown modification
Short namexX
MODOMICS code new2000000000X
MODOMICS codeX
Nature of the modified residueNatural
RNAMods code@
Residue unique ID98
Found in RNAYes
Found in phylogenyEubacteria
Found naturally in RNA typesrRNA

Chemical information

Sum formula
Type of moietynucleoside
Degeneracyunknown residue, modification present but its character is unknown
SMILES-
logPNone
TPSANone
Number of atomsNone
Number of Hydrogen Bond Acceptors 1 (HBA1)None
Number of Hydrogen Bond Acceptors 2 (HBA2)None
Number of Hydrogen Bond Donors (HBD)None
InChINone
InChIKeyNone

* Chemical properties calculated with Open Babel - O'Boyle et al. Open Babel: An open chemical toolbox. J Cheminform 3, 33 (2011) (link)


Download Structures

2D   .mol .mol2 .sdf .pdb .smi
3D   .mol .mol2 .sdf .pdb


LC-MS Information

Monoisotopic mass0.0
Average mass0.0
[M+H]+ not available
Product ions not available
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

Reactions starting from unknown modification

Name
xX:G

Last modification of this entry: Sept. 22, 2023