General Data

RNA Type	tRNA
SOTerm	SO:0000265
Original Source	None
Secondary Structure	.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Sequence (UNICHARACTER ENCODING)	GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTT6ATCCCAGGGTCGTGGGTTCGѢGCCCCACGTTGGGCGCCA
Sequence (SHORT NAMES ENCODING)	GCCCGGCpm5UAGCpm5UCAGpm5UCGGpm5UAGAGCApm5UGGGACpm5UCpm5Upm5Upt6AApm5UCCCAGGGpm5UCGpm5UGGGpm5Upm5UCGpm1AGCCCCACGpm5Upm5UGGGCGCCA
Sequence (MODOMICS CODE ENCODING)	GCCCGGC2000005551UAGC2000005551UCAG2000005551UCGG2000005551UAGAGCA2000005551UGGGAC2000005551UC2000005551U2000005551U2000062551AA2000005551UCCCAGGG2000005551UCG2000005551UGGG2000005551U2000005551UCG2000001551AGCCCCACG2000005551U2000005551UGGGCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GCCCGGCTAGCTCAGTC-GGT--AGAGCATGGGACTCTT6ATCCCAGGGTC-------------------GTGGGTTCGѢGCCCCACGTTGGGCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	8	12	16	20	27	33	35	36	37	39	45B	50	54	55	58	67	68
Position in the sequence	8	12	16	20	27	33	35	36	37	39	47	50	54	55	58	67	68
Modification positions	m5U	m5U	m5U	m5U	m5U	m5U	m5U	m5U	t6A	m5U	m5U	m5U	m5U	m5U	m1A	m5U	m5U
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS