Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000702492
Gene ID: ENSG00000291151
Gene Name: NSUN5P1
Sequence (UNICHARACTER ENCODING) GUAAAGGCGCGCGGGAACAUGGGGCUGUACGCUGCGGUGGCAGGCGUGCUGGCCGGCGUGGAGAGCCGCCAGGGCUCUAUCAAGGGGCUGGUGUACUCCAGCAACUUCCAGCCUUGAUGACUUACAAGCCCUCAAGGGGAAGCAUUUUCUCCUGGACUCCUUGAUGCCGGAGCUGCUGGUGUUUCCCGCCCAGACAGAUCUGCAUGAACACCCACUGUACCGGGCCGGACACCUCAUUCUGCAGGACAGGGCCAGCUGUCUCCCAGCCAUGCUGCUGGACCCCUGCCAGGCUCCCAUGUCAUCGAUGCCUGUGCCGCCCCAGGCAAUAAGACCAGUCACUUGGCUGCUCUUCUGAAGAACCAAGGGAAGAUCUUUGCCUUUGACCUGGAUGCCAAGCGGCUGGCAUCCAUGGCCACGCUGCUGGCCUGGGUUGGCGUCUCCUGCUGUGAGCUGGCUGAGGAGGACUUCCUGGCGGUCUCCCCCUUAGAUCCGCGCUAUCGUGAGGUCCACUAUGUCCUGCUGGAUCCUUCCUGCAGUGGCUCGGGUGAGAUGGUGAGAAGGCGUGGCUGAGGGACUCGGAGGUCCACAGCAGCUUAGACCUGGAGUCAUCUGUUUUGGUCUUAGUUCUGACACUUUAAUGGGCUUGGGACCCUGGAGCAAAAGUUCUCCUCUGUGAGGCAAGGAUUUCAGGAGCGAGGAUUUCAGGACUGAGGCAGCCUGUGAAGCUGUGUAACCGAGACACGCUUUUCCUUAGCGGCUCGUCUACUCCAUGUGCUCCCUCUGCCAGGAGGAGAAUGAAGACAUGGUACCAGAUGCGCUGCAGCAGAACCCGGGCGCCUUCAGGCUAGCUCCCGCCCUGCCUGCCCGGCCCCACCGAGGCCUGAGCACGUUCCCGGGUGCCGAGCACUGCCUCCGGGCUUCCCCCAAGACCACGCUUAGCGGUGGCUUCUUCGUUGCUGUAAUUGAACGGGUCGAGAUGCCGAUCUCAGCCUCACAGGCCAAAGCAUCAGCACCAGAACGCACACCCAGCCCAGCCCCAAAGAGAAAGAAGAGACAGCAAAGAGCCGCAGCCGGUGCUUGCACACCGCCUUGCACAUAG?AGAGGCUCCAGGCUGACUCCUUCCUGGUGGGAAAGGAAGAUGCCUGUCCUCUCCGUGGAGGACCCUGGGCCCUCACCGCAGGCAGCAGUUUGCAUUUUGAAAGGUUAUUGGGUCCCUUCCUCGGGCUGUGUUCUUGCUGGUGAGCAAAAGUGUUGCCUGCAGAAAUAAAAUGCAGAACGUACUCUA
Sequence (SHORT NAMES ENCODING) GUAAAGGCGCGCGGGAACAUGGGGCUGUACGCUGCGGUGGCAGGCGUGCUGGCCGGCGUGGAGAGCCGCCAGGGCUCUAUCAAGGGGCUGGUGUACUCCAGCAACUUCCAGCCUUGAUGACUUACAAGCCCUCAAGGGGAAGCAUUUUCUCCUGGACUCCUUGAUGCCGGAGCUGCUGGUGUUUCCCGCCCAGACAGAUCUGCAUGAACACCCACUGUACCGGGCCGGACACCUCAUUCUGCAGGACAGGGCCAGCUGUCUCCCAGCCAUGCUGCUGGACCCCUGCCAGGCUCCCAUGUCAUCGAUGCCUGUGCCGCCCCAGGCAAUAAGACCAGUCACUUGGCUGCUCUUCUGAAGAACCAAGGGAAGAUCUUUGCCUUUGACCUGGAUGCCAAGCGGCUGGCAUCCAUGGCCACGCUGCUGGCCUGGGUUGGCGUCUCCUGCUGUGAGCUGGCUGAGGAGGACUUCCUGGCGGUCUCCCCCUUAGAUCCGCGCUAUCGUGAGGUCCACUAUGUCCUGCUGGAUCCUUCCUGCAGUGGCUCGGGUGAGAUGGUGAGAAGGCGUGGCUGAGGGACUCGGAGGUCCACAGCAGCUUAGACCUGGAGUCAUCUGUUUUGGUCUUAGUUCUGACACUUUAAUGGGCUUGGGACCCUGGAGCAAAAGUUCUCCUCUGUGAGGCAAGGAUUUCAGGAGCGAGGAUUUCAGGACUGAGGCAGCCUGUGAAGCUGUGUAACCGAGACACGCUUUUCCUUAGCGGCUCGUCUACUCCAUGUGCUCCCUCUGCCAGGAGGAGAAUGAAGACAUGGUACCAGAUGCGCUGCAGCAGAACCCGGGCGCCUUCAGGCUAGCUCCCGCCCUGCCUGCCCGGCCCCACCGAGGCCUGAGCACGUUCCCGGGUGCCGAGCACUGCCUCCGGGCUUCCCCCAAGACCACGCUUAGCGGUGGCUUCUUCGUUGCUGUAAUUGAACGGGUCGAGAUGCCGAUCUCAGCCUCACAGGCCAAAGCAUCAGCACCAGAACGCACACCCAGCCCAGCCCCAAAGAGAAAGAAGAGACAGCAAAGAGCCGCAGCCGGUGCUUGCACACCGCCUUGCACAUAGm5CAGAGGCUCCAGGCUGACUCCUUCCUGGUGGGAAAGGAAGAUGCCUGUCCUCUCCGUGGAGGACCCUGGGCCCUCACCGCAGGCAGCAGUUUGCAUUUUGAAAGGUUAUUGGGUCCCUUCCUCGGGCUGUGUUCUUGCUGGUGAGCAAAAGUGUUGCCUGCAGAAAUAAAAUGCAGAACGUACUCUA
Sequence (MODOMICS CODE ENCODING) GUAAAGGCGCGCGGGAACAUGGGGCUGUACGCUGCGGUGGCAGGCGUGCUGGCCGGCGUGGAGAGCCGCCAGGGCUCUAUCAAGGGGCUGGUGUACUCCAGCAACUUCCAGCCUUGAUGACUUACAAGCCCUCAAGGGGAAGCAUUUUCUCCUGGACUCCUUGAUGCCGGAGCUGCUGGUGUUUCCCGCCCAGACAGAUCUGCAUGAACACCCACUGUACCGGGCCGGACACCUCAUUCUGCAGGACAGGGCCAGCUGUCUCCCAGCCAUGCUGCUGGACCCCUGCCAGGCUCCCAUGUCAUCGAUGCCUGUGCCGCCCCAGGCAAUAAGACCAGUCACUUGGCUGCUCUUCUGAAGAACCAAGGGAAGAUCUUUGCCUUUGACCUGGAUGCCAAGCGGCUGGCAUCCAUGGCCACGCUGCUGGCCUGGGUUGGCGUCUCCUGCUGUGAGCUGGCUGAGGAGGACUUCCUGGCGGUCUCCCCCUUAGAUCCGCGCUAUCGUGAGGUCCACUAUGUCCUGCUGGAUCCUUCCUGCAGUGGCUCGGGUGAGAUGGUGAGAAGGCGUGGCUGAGGGACUCGGAGGUCCACAGCAGCUUAGACCUGGAGUCAUCUGUUUUGGUCUUAGUUCUGACACUUUAAUGGGCUUGGGACCCUGGAGCAAAAGUUCUCCUCUGUGAGGCAAGGAUUUCAGGAGCGAGGAUUUCAGGACUGAGGCAGCCUGUGAAGCUGUGUAACCGAGACACGCUUUUCCUUAGCGGCUCGUCUACUCCAUGUGCUCCCUCUGCCAGGAGGAGAAUGAAGACAUGGUACCAGAUGCGCUGCAGCAGAACCCGGGCGCCUUCAGGCUAGCUCCCGCCCUGCCUGCCCGGCCCCACCGAGGCCUGAGCACGUUCCCGGGUGCCGAGCACUGCCUCCGGGCUUCCCCCAAGACCACGCUUAGCGGUGGCUUCUUCGUUGCUGUAAUUGAACGGGUCGAGAUGCCGAUCUCAGCCUCACAGGCCAAAGCAUCAGCACCAGAACGCACACCCAGCCCAGCCCCAAAGAGAAAGAAGAGACAGCAAAGAGCCGCAGCCGGUGCUUGCACACCGCCUUGCACAUAG2000000005CAGAGGCUCCAGGCUGACUCCUUCCUGGUGGGAAAGGAAGAUGCCUGUCCUCUCCGUGGAGGACCCUGGGCCCUCACCGCAGGCAGCAGUUUGCAUUUUGAAAGGUUAUUGGGUCCCUUCCUCGGGCUGUGUUCUUGCUGGUGAGCAAAAGUGUUGCCUGCAGAAAUAAAAUGCAGAACGUACUCUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1100
Modification Positions m5C
Genomic Coordinates 7:75416601:+
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs 4RW3xrzJ5VQa
Er3yHVFp6tX8
JBTYPMm6qNsy
KyXZuxKVckYS