RNA Type | tRNA |
---|---|
SOTerm | SO:0000269 |
Original Source | tdbD00009888 |
Secondary Structure | (((((((..((((....[...))))((((((.......))))))((((....)))).(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GGCACUAUGGCMGAGD#GDDAAGGCRAGAGAЩUCGAЧAPCUCUJGGGCUCUGCCCG?GCUGGTPCAAAUCCUGCUGGUGUCGCCA |
Sequence (SHORT NAMES ENCODING) | GGCACUAUGGCpac4CGAGpDpGmGpDpDAAGGCpm2,2GAGAGApm3CUCGApi6AApYCUCUpUmGGGCUCUGCCCGpm5CGCUGGpm5UpYCAAAUCCUGCUGGUGUCGCCA |
Sequence (MODOMICS CODE ENCODING) | GGCACUAUGGC2000042551CGAG2000008551U2000090551GG2000008551U2000008551UAAGGC2000022551GAGAGA2000003551CUCGA2000061551AA2000009551UCUCU2000090551UGGGCUCUGCCCG2000005551CGCUGG2000005551U2000009551UCAAAUCCUGCUGGUGUCGCCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GGCACUAUGGCMGAGD--#GDD-AAGGCRAGAGAЩUCGAЧAPCUCUJGGGCUCUGCCCG?----------GCUGGTPCAAAUCCUGCUGGUGUCGCCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 12 | 16 | 18 | 20 | 20A | 26 | 32 | 37 | 39 | 44 | 45L | 54 | 55 | 57 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 12 | 16 | 17 | 19 | 20 | 26 | 32 | 37 | 39 | 44 | 57 | 63 | 64 | 66 |
Modification positions | ac4C | D | Gm | D | D | m2,2G | m3C | i6A | Y | Um | m5C | m5U | Y | xA |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | 6262655 |
Position in the alignment | 12 | 16 | 18 | 20 | 20A | 26 | 32 | 37 | 39 | 44 | 45L | 54 | 55 | 57 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 12 | 16 | 17 | 19 | 20 | 26 | 32 | 37 | 39 | 44 | 57 | 63 | 64 | 66 |
Source: 6262655 | ac4C | D | Gm | D | D | m2,2G | m3C | i6A | Y | Um | m5C | m5U | Y | xA |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | None |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | None |
Source: 355641 | ac4C | D | Gm | D | D | m2,2G | i6A | Y | Um | m5C | m5U | Y | ||
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 5 | 3 | 3 | 3 | 3 | 3 | 3 | 5 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 5 | 3 | 3 | 3 | 3 | 3 | 3 | 5 |
Source: 389430 | ac4C | D | Gm | D | D | m2,2G | m3C | i6A | Y | Um | m5C | m5U | Y | |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 5 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 5 |