General Data

RNA Type	tRNA
SOTerm	SO:0000269
Original Source	tdbD00009888
Secondary Structure	(((((((..((((....[...))))((((((.......))))))((((....)))).(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGCACUAUGGCMGAGD#GDDAAGGCRAGAGAЩUCGAЧAPCUCUJGGGCUCUGCCCG?GCUGGTPCAAAUCCUGCUGGUGUCGCCA
Sequence (SHORT NAMES ENCODING)	GGCACUAUGGCpac4CGAGpDpGmGpDpDAAGGCpm2,2GAGAGApm3CUCGApi6AApYCUCUpUmGGGCUCUGCCCGpm5CGCUGGpm5UpYCAAAUCCUGCUGGUGUCGCCA
Sequence (MODOMICS CODE ENCODING)	GGCACUAUGGC2000042551CGAG2000008551U2000090551GG2000008551U2000008551UAAGGC2000022551GAGAGA2000003551CUCGA2000061551AA2000009551UCUCU2000090551UGGGCUCUGCCCG2000005551CGCUGG2000005551U2000009551UCAAAUCCUGCUGGUGUCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGCACUAUGGCMGAGD--#GDD-AAGGCRAGAGAЩUCGAЧAPCUCUJGGGCUCUGCCCG?----------GCUGGTPCAAAUCCUGCUGGUGUCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	12	16	18	20	20A	26	32	37	39	44	45L	54	55	57
Position in the sequence	12	16	17	19	20	26	32	37	39	44	57	63	64	66
Modification positions	ac4C	D	Gm	D	D	m2,2G	m3C	i6A	Y	Um	m5C	m5U	Y	xA
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	6262655

Modification Annotation

_{Table containing the data present in the literature relating to the modification positions present in the RNA sequences. Some of the modified residuals may differ from the modifications originally present in MODOMICS. It follows the same format as the previous table. The table reports the scores that have been associated to the modified nucleotides so to have an estimation of the reliability of their presence.}

Position in the alignment	12	16	18	20	20A	26	32	37	39	44	45L	54	55	57
Position in the sequence	12	16	17	19	20	26	32	37	39	44	57	63	64	66
Source: 355641	ac4C	D	Gm	D	D	m2,2G		i6A	Y	Um	m5C	m5U	Y
Level of Experimental Reliability	3	3	3	3	3	3	5	3	3	3	3	3	3	5
Level of Experimental Evidence	3	3	3	3	3	3	5	3	3	3	3	3	3	5
Source: 6262655	ac4C	D	Gm	D	D	m2,2G	m3C	i6A	Y	Um	m5C	m5U	Y	xA
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	None
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	None
Source: 389430	ac4C	D	Gm	D	D	m2,2G	m3C	i6A	Y	Um	m5C	m5U	Y
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	5
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	5