General Data

RNA Type	tRNA
SOTerm	SO:0000269
Original Source	tdbR00000408
Secondary Structure	(((((((..((((....[...))))((((((.......))))))((((...))))..(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGCAACUUGGCMGAGD#GDDAAGGCRAAAGAPUIGAЧAPCUUUJGGGCUUUGCCCG?GCAGGTPCGAGUCCUGCAGUUGUCGCCA
Sequence (SHORT NAMES ENCODING)	GGCAACUUGGCpac4CGAGpDpGmGpDpDAAGGCpm2,2GAAAGApYUpIGApi6AApYCUUUpUmGGGCUUUGCCCGpm5CGCAGGpm5UpYCGAGUCCUGCAGUUGUCGCCA
Sequence (MODOMICS CODE ENCODING)	GGCAACUUGGC2000042551CGAG2000008551U2000090551GG2000008551U2000008551UAAGGC2000022551GAAAGA2000009551UU2000009551AGA2000061551AA2000009551UCUUU2000090551UGGGCUUUGCCCG2000005551CGCAGG2000005551U2000009551UCGAGUCCUGCAGUUGUCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGCAACUUGGCMGAGD--#GDD-AAGGCRAAAGAPUIGAЧAPCUUUJGGGCUUUGCCCG?----------GCAGGTPCGAGUCCUGCAGUUGUCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	12	16	18	20	20A	26	32	34	37	39	44	45L	54	55
Position in the sequence	12	16	17	19	20	26	32	34	37	39	44	57	63	64
Modification positions	ac4C	D	Gm	D	D	m2,2G	Y	I	i6A	Y	Um	m5C	m5U	Y
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS