General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000691220
Gene ID:	ENSG00000127838
Gene Name:	PNKD
Sequence (UNICHARACTER ENCODING)	AUGGCGGCGGUGGUAGCUGCUACGGCGCUGAAGGGCCGGGGGGCGAGAAAUGCCCGCGUCCPCCGGGGGAUUCUCGCAGGAGCCACAGCUAЖCAAGGCUUCUCAPAЖCAGGACCCGGGCCCUGCAAAGCCACAGCUCCCCAGAGGGCAAGGAGGAACCUGAACCCCUAUCCCCGGAGCUGGAAUACЖUUCCCAGAAAGAGGGGCAAGAACCCCAUGAAAGCUGUGGGACUGGCCUGUCCCCUGUGUCAUCAAGAUGUGGUCAGCGUGGGACGGCUUCAGAUCCGGGCCCUGGCUACACCUGGCCACACACAAGGCCAUCUGGUCUACCUACUGGAUGGGGAGCCCUACAAGGGUCCCUCCUGCCUCUUCUCAGGGGACCUGCUCUUCCUCUCUGGCUGUGGGCGGACCUUUGAGGGCAAUGCAGAGACCAUGCUGAGCUCACUGGACACUGUGCUGGGGCUAGGGGAUGACACCCUUCUGUGGCCUGGUCAUGAGUAUGCAGAGGAGAACCUGGGCUUUGCAGGUGUGGUGGAGCCCGAGAACCUGGCCCGGGAGAGGAAGAUGCAGUGGGUGCAGCGGCAGCGGCUGGAGCGCAAGGGCACGUGCCCAUCUACCCUGGGAGAGGAGCGCUCCUACAACCCGUUCCUGAGAACCCACUGCCUGGCGCUACAGGAGGCUCUGGGGCCGGGGCCGGGCCCCACUGGGGAUGAUGACUACUCCCGGGCCCAGCUCCUGGAAGAGCUCCGCCGGCUGAAGGAUAUGCACAAGAGCAAGUGAUGCCCCCAGCGCCCCCAGCCCAGCCCACUCCCCGCAUGGGGAGGCCGCCACCACCAACACCUCAUCAUCCUUCUCAUCGCUAACACCACCACCUCCAUCGGCACCCAAGCGGGCAUCAUCCCCCCACACUGCUCAGGGGAGGGGAGGGAUCAGGCGAUGAGACUGUGAGGCCAAAAGAAGGGGGCCUGUUGGAGGCUGGGAACCCCGCAGCGCGAGGCUGCCUCAUCAACGGCAAGAGGAAAGGAGGGGUCUCGGGЖCAUCUCCAGACCCUACCAACUGGGAGGGUCCCCUCCUCCUUCCCUACUCCUGGGACGGCAGCAAGGЖCAUGGGGGCUGCUGUUAGCUUCUCCGUCAGGAGGCCUCAUCUCACUGUAGCCCUGGAACCCAGGGUCCAUCUUGCCCUUCCCCCAUCCAUGGUUGGGAAAGAAGCUCAGCCCCUCACAGUGGCCUCAAGUGUGAUGCCUUACAAAAGCACCACUCAGAUGGGCAGCUGGЖCUCUGGUGUCCUGAGACUCUGCCCUCUUCCCACAGCCUCCCUGCCCCACCCAUCCCUGCAAAGCCAUUUUUCAGЖCAGAGCCAUUCCUAAGAACACUGAAGGGCUGGAAUGCUGGCUGGCCACUCUCUGCCUCAGUGGCCUCCCUACAGCCUGGAAGAAGGAGGGUCCUGAUUGCCAAGGAAACCUCCUCAUUGGGCUAAGGAGACACUGGAGUCUGGAGUGUGGAGCCCCACAGUCUUGCAGGUCACAUGCUCUCCUUGCACAUCUGGCCUGGUUGUACCCACUGGCCUCUGCCUCUGCCCUGGGCCAAAAGGGCCCCUCCUUGCCAGGGGAGAGACAGCCACGGUCCUCUUUGGCCGAUGCUGUAUUCUCAUUUUGGCCCUUGUUCUUAGGCCCGUCUGCCCGCCUUCCUCCAUCUAACCUUUCCUGUUUUAUCCGCAGCCCUUUUCUUCUUUGAGUUAGUAAAGAUUUAUUCUGUAACCUGACACUCAUCUGGCCCUUUGCAGUUUGCCAGCCAUAUUCCCAUGUGAUUUCCCACUGGAUCCAGGCCCCCAUCCGGCUGGCAGGAGGGGGCUCUGACGUGCAGGUUGGAAAUCAGAAGUCUGUGAGAGCGCGGGAGUGCAUGGCAGCUCUGGGUCCCAGACCUGGCCCGACCCCUCUGCUUCACCUCCAGCUCUGCUGCUCCUCUACUCUUGGGUCGAGAUCCCUUUGGAGCCACAG?GAGGAACCCUGUGGUCCUCAGGCAGGUGUACCUUGAGUCAGCCAGGAGCCCUCUUUUCCUGUGUCAAAGCCUGCCCUCGGGCUCUGCUCACCUCUGGUGACCCUCCAAGAUGCCCCUGCCCUCAGUUUCCCCUCAUGAUCUGGCCUCUGCCCCCUUCUCUAGCCACAGCCUCUAGUACACUUUAGCAAUACCACCAGACUAGUUAGAGUUCCCCACUCACCAAGCAAGЖCAUGCAGUUUCAUGCCUCUGUGCCUUCGCUCAUGCUGUUUCUUCCGACUGGAAUGCCUUCCCCUGCUCCUCCUGCCUUGUCUGCCUGGCAAGUUCAUCUCUCACGAUCCCCUCAAAGGCCCCCUCCUCCAGGAAGGCAACCCCUGUGCCCCUCCCCUCCAGGCUACCUCUGCACUUUGUCAAUGCUUCUCUUGUGGCACUUAUCACACUGUAUUUUACUUGUUUACAUGUUUGUCUCCCCUUCUAGACUGUGAAUCCUUAAGGGCAUGGACUGUAUCUUAUGCAUCUCUGUAUUUCUGCGCCUAGCACGGUGCCUAGCACACAGUAGGCGCUCAAUAAAUGUUGAAUGAAUGAAUGAUU
Sequence (SHORT NAMES ENCODING)	AUGGCGGCGGUGGUAGCUGCUACGGCGCUGAAGGGCCGGGGGGCGAGAAAUGCCCGCGUCCYCCGGGGGAUUCUCGCAGGAGCCACAGCUAm6ACAAGGCUUCUCAYAm6ACAGGACCCGGGCCCUGCAAAGCCACAGCUCCCCAGAGGGCAAGGAGGAACCUGAACCCCUAUCCCCGGAGCUGGAAUACm6AUUCCCAGAAAGAGGGGCAAGAACCCCAUGAAAGCUGUGGGACUGGCCUGUCCCCUGUGUCAUCAAGAUGUGGUCAGCGUGGGACGGCUUCAGAUCCGGGCCCUGGCUACACCUGGCCACACACAAGGCCAUCUGGUCUACCUACUGGAUGGGGAGCCCUACAAGGGUCCCUCCUGCCUCUUCUCAGGGGACCUGCUCUUCCUCUCUGGCUGUGGGCGGACCUUUGAGGGCAAUGCAGAGACCAUGCUGAGCUCACUGGACACUGUGCUGGGGCUAGGGGAUGACACCCUUCUGUGGCCUGGUCAUGAGUAUGCAGAGGAGAACCUGGGCUUUGCAGGUGUGGUGGAGCCCGAGAACCUGGCCCGGGAGAGGAAGAUGCAGUGGGUGCAGCGGCAGCGGCUGGAGCGCAAGGGCACGUGCCCAUCUACCCUGGGAGAGGAGCGCUCCUACAACCCGUUCCUGAGAACCCACUGCCUGGCGCUACAGGAGGCUCUGGGGCCGGGGCCGGGCCCCACUGGGGAUGAUGACUACUCCCGGGCCCAGCUCCUGGAAGAGCUCCGCCGGCUGAAGGAUAUGCACAAGAGCAAGUGAUGCCCCCAGCGCCCCCAGCCCAGCCCACUCCCCGCAUGGGGAGGCCGCCACCACCAACACCUCAUCAUCCUUCUCAUCGCUAACACCACCACCUCCAUCGGCACCCAAGCGGGCAUCAUCCCCCCACACUGCUCAGGGGAGGGGAGGGAUCAGGCGAUGAGACUGUGAGGCCAAAAGAAGGGGGCCUGUUGGAGGCUGGGAACCCCGCAGCGCGAGGCUGCCUCAUCAACGGCAAGAGGAAAGGAGGGGUCUCGGGm6ACAUCUCCAGACCCUACCAACUGGGAGGGUCCCCUCCUCCUUCCCUACUCCUGGGACGGCAGCAAGGm6ACAUGGGGGCUGCUGUUAGCUUCUCCGUCAGGAGGCCUCAUCUCACUGUAGCCCUGGAACCCAGGGUCCAUCUUGCCCUUCCCCCAUCCAUGGUUGGGAAAGAAGCUCAGCCCCUCACAGUGGCCUCAAGUGUGAUGCCUUACAAAAGCACCACUCAGAUGGGCAGCUGGm6ACUCUGGUGUCCUGAGACUCUGCCCUCUUCCCACAGCCUCCCUGCCCCACCCAUCCCUGCAAAGCCAUUUUUCAGm6ACAGAGCCAUUCCUAAGAACACUGAAGGGCUGGAAUGCUGGCUGGCCACUCUCUGCCUCAGUGGCCUCCCUACAGCCUGGAAGAAGGAGGGUCCUGAUUGCCAAGGAAACCUCCUCAUUGGGCUAAGGAGACACUGGAGUCUGGAGUGUGGAGCCCCACAGUCUUGCAGGUCACAUGCUCUCCUUGCACAUCUGGCCUGGUUGUACCCACUGGCCUCUGCCUCUGCCCUGGGCCAAAAGGGCCCCUCCUUGCCAGGGGAGAGACAGCCACGGUCCUCUUUGGCCGAUGCUGUAUUCUCAUUUUGGCCCUUGUUCUUAGGCCCGUCUGCCCGCCUUCCUCCAUCUAACCUUUCCUGUUUUAUCCGCAGCCCUUUUCUUCUUUGAGUUAGUAAAGAUUUAUUCUGUAACCUGACACUCAUCUGGCCCUUUGCAGUUUGCCAGCCAUAUUCCCAUGUGAUUUCCCACUGGAUCCAGGCCCCCAUCCGGCUGGCAGGAGGGGGCUCUGACGUGCAGGUUGGAAAUCAGAAGUCUGUGAGAGCGCGGGAGUGCAUGGCAGCUCUGGGUCCCAGACCUGGCCCGACCCCUCUGCUUCACCUCCAGCUCUGCUGCUCCUCUACUCUUGGGUCGAGAUCCCUUUGGAGCCACAGm5CGAGGAACCCUGUGGUCCUCAGGCAGGUGUACCUUGAGUCAGCCAGGAGCCCUCUUUUCCUGUGUCAAAGCCUGCCCUCGGGCUCUGCUCACCUCUGGUGACCCUCCAAGAUGCCCCUGCCCUCAGUUUCCCCUCAUGAUCUGGCCUCUGCCCCCUUCUCUAGCCACAGCCUCUAGUACACUUUAGCAAUACCACCAGACUAGUUAGAGUUCCCCACUCACCAAGCAAGm6ACAUGCAGUUUCAUGCCUCUGUGCCUUCGCUCAUGCUGUUUCUUCCGACUGGAAUGCCUUCCCCUGCUCCUCCUGCCUUGUCUGCCUGGCAAGUUCAUCUCUCACGAUCCCCUCAAAGGCCCCCUCCUCCAGGAAGGCAACCCCUGUGCCCCUCCCCUCCAGGCUACCUCUGCACUUUGUCAAUGCUUCUCUUGUGGCACUUAUCACACUGUAUUUUACUUGUUUACAUGUUUGUCUCCCCUUCUAGACUGUGAAUCCUUAAGGGCAUGGACUGUAUCUUAUGCAUCUCUGUAUUUCUGCGCCUAGCACGGUGCCUAGCACACAGUAGGCGCUCAAUAAAUGUUGAAUGAAUGAAUGAUU
Sequence (MODOMICS CODE ENCODING)	AUGGCGGCGGUGGUAGCUGCUACGGCGCUGAAGGGCCGGGGGGCGAGAAAUGCCCGCGUCC2000000009UCCGGGGGAUUCUCGCAGGAGCCACAGCUA2000000006ACAAGGCUUCUCA2000000009UA2000000006ACAGGACCCGGGCCCUGCAAAGCCACAGCUCCCCAGAGGGCAAGGAGGAACCUGAACCCCUAUCCCCGGAGCUGGAAUAC2000000006AUUCCCAGAAAGAGGGGCAAGAACCCCAUGAAAGCUGUGGGACUGGCCUGUCCCCUGUGUCAUCAAGAUGUGGUCAGCGUGGGACGGCUUCAGAUCCGGGCCCUGGCUACACCUGGCCACACACAAGGCCAUCUGGUCUACCUACUGGAUGGGGAGCCCUACAAGGGUCCCUCCUGCCUCUUCUCAGGGGACCUGCUCUUCCUCUCUGGCUGUGGGCGGACCUUUGAGGGCAAUGCAGAGACCAUGCUGAGCUCACUGGACACUGUGCUGGGGCUAGGGGAUGACACCCUUCUGUGGCCUGGUCAUGAGUAUGCAGAGGAGAACCUGGGCUUUGCAGGUGUGGUGGAGCCCGAGAACCUGGCCCGGGAGAGGAAGAUGCAGUGGGUGCAGCGGCAGCGGCUGGAGCGCAAGGGCACGUGCCCAUCUACCCUGGGAGAGGAGCGCUCCUACAACCCGUUCCUGAGAACCCACUGCCUGGCGCUACAGGAGGCUCUGGGGCCGGGGCCGGGCCCCACUGGGGAUGAUGACUACUCCCGGGCCCAGCUCCUGGAAGAGCUCCGCCGGCUGAAGGAUAUGCACAAGAGCAAGUGAUGCCCCCAGCGCCCCCAGCCCAGCCCACUCCCCGCAUGGGGAGGCCGCCACCACCAACACCUCAUCAUCCUUCUCAUCGCUAACACCACCACCUCCAUCGGCACCCAAGCGGGCAUCAUCCCCCCACACUGCUCAGGGGAGGGGAGGGAUCAGGCGAUGAGACUGUGAGGCCAAAAGAAGGGGGCCUGUUGGAGGCUGGGAACCCCGCAGCGCGAGGCUGCCUCAUCAACGGCAAGAGGAAAGGAGGGGUCUCGGG2000000006ACAUCUCCAGACCCUACCAACUGGGAGGGUCCCCUCCUCCUUCCCUACUCCUGGGACGGCAGCAAGG2000000006ACAUGGGGGCUGCUGUUAGCUUCUCCGUCAGGAGGCCUCAUCUCACUGUAGCCCUGGAACCCAGGGUCCAUCUUGCCCUUCCCCCAUCCAUGGUUGGGAAAGAAGCUCAGCCCCUCACAGUGGCCUCAAGUGUGAUGCCUUACAAAAGCACCACUCAGAUGGGCAGCUGG2000000006ACUCUGGUGUCCUGAGACUCUGCCCUCUUCCCACAGCCUCCCUGCCCCACCCAUCCCUGCAAAGCCAUUUUUCAG2000000006ACAGAGCCAUUCCUAAGAACACUGAAGGGCUGGAAUGCUGGCUGGCCACUCUCUGCCUCAGUGGCCUCCCUACAGCCUGGAAGAAGGAGGGUCCUGAUUGCCAAGGAAACCUCCUCAUUGGGCUAAGGAGACACUGGAGUCUGGAGUGUGGAGCCCCACAGUCUUGCAGGUCACAUGCUCUCCUUGCACAUCUGGCCUGGUUGUACCCACUGGCCUCUGCCUCUGCCCUGGGCCAAAAGGGCCCCUCCUUGCCAGGGGAGAGACAGCCACGGUCCUCUUUGGCCGAUGCUGUAUUCUCAUUUUGGCCCUUGUUCUUAGGCCCGUCUGCCCGCCUUCCUCCAUCUAACCUUUCCUGUUUUAUCCGCAGCCCUUUUCUUCUUUGAGUUAGUAAAGAUUUAUUCUGUAACCUGACACUCAUCUGGCCCUUUGCAGUUUGCCAGCCAUAUUCCCAUGUGAUUUCCCACUGGAUCCAGGCCCCCAUCCGGCUGGCAGGAGGGGGCUCUGACGUGCAGGUUGGAAAUCAGAAGUCUGUGAGAGCGCGGGAGUGCAUGGCAGCUCUGGGUCCCAGACCUGGCCCGACCCCUCUGCUUCACCUCCAGCUCUGCUGCUCCUCUACUCUUGGGUCGAGAUCCCUUUGGAGCCACAG2000000005CGAGGAACCCUGUGGUCCUCAGGCAGGUGUACCUUGAGUCAGCCAGGAGCCCUCUUUUCCUGUGUCAAAGCCUGCCCUCGGGCUCUGCUCACCUCUGGUGACCCUCCAAGAUGCCCCUGCCCUCAGUUUCCCCUCAUGAUCUGGCCUCUGCCCCCUUCUCUAGCCACAGCCUCUAGUACACUUUAGCAAUACCACCAGACUAGUUAGAGUUCCCCACUCACCAAGCAAG2000000006ACAUGCAGUUUCAUGCCUCUGUGCCUUCGCUCAUGCUGUUUCUUCCGACUGGAAUGCCUUCCCCUGCUCCUCCUGCCUUGUCUGCCUGGCAAGUUCAUCUCUCACGAUCCCCUCAAAGGCCCCCUCCUCCAGGAAGGCAACCCCUGUGCCCCUCCCCUCCAGGCUACCUCUGCACUUUGUCAAUGCUUCUCUUGUGGCACUUAUCACACUGUAUUUUACUUGUUUACAUGUUUGUCUCCCCUUCUAGACUGUGAAUCCUUAAGGGCAUGGACUGUAUCUUAUGCAUCUCUGUAUUUCUGCGCCUAGCACGGUGCCUAGCACACAGUAGGCGCUCAAUAAAUGUUGAAUGAAUGAAUGAUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	62	92	105	107	187	1034	1101	1271	1346	1992	2221
Modification Positions	Y	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m5C	m6A
Genomic Coordinates	2:218270597:+	2:218271405:+	2:218271418:+	2:218271420:+	2:218271500:+	2:218345238:+	2:218345305:+	2:218345475:+	2:218345550:+	2:218346196:+	2:218346425:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	L6w2k2VEv4EY BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	ArijeGVTwYBw WiQcrNTGZHPT	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR	8cMbzB4aD5Se ArijeGVTwYBw