Modomics - A Database of RNA Modifications

General Data

RNA Type other
Original Source 1VQL_C
Sequence (UNICHARACTER ENCODING) CTSEDACC
Sequence (SHORT NAMES ENCODING) CPPUpm5Upmnm5s2Upm6t6ApDACC
Sequence (MODOMICS CODE ENCODING) C2000005551U2002511551U2000662551A2000008551UACC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 1 3 4 5
Modification positions PPU pmnm5s2U pm6t6A pD
Level of Experimental Evidence 5 5 5 5
Level of Experimental Reliability 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS