General Data

RNA Type	rRNA
SOTerm	S0:0000407
Original Source	K03432
Sequence (UNICHARACTER ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAUʍUGCUUGPCPCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAPGGCUCʍUUAAAPCAGPUAUGGUJCCPUJGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUAʍUUCUAGʍGCUAAJABAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAPGCGUGCAPUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGPGACGGGGAAUCAGGGUUCGAUJCCGGAGA#GGAGCCUGAGAAACGGCUACCACAUBCAAGGʍAGGCAGCAGGCGCGCʍAAUUACCCACUCCCGACCCGGGGA#GUʍGUGABGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUPUAAʍUCCUUUAACGAGGʍUCCAUUGGAG#GCAAGUCPGGUGCCAGCAGCCGCGGJAAUUCCAGCUCCAAUA#CGUAPAPUAAAGUUGCUGCAGUUʍAAAAGCUCGUAGPU#GAPCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGBGJUPACUUUGAAAAAAPPAGAGUGPUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAPAAP#GAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUPAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUPCCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUPGCCAAGAAUGUUUUCAUUAAUCAAGAʍCGAAAGUCGGAGGUUCGAAGACGAPCAGAUACCGUCGUAGUUCCGACCAPAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAPGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCPUAAUUPGACαCAACACGGGAAACCUCACCCGGCBCGGACACGGACAGGAJUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGZG#UGCAUGGCCGUUCUUAGUPGGUGGAGCGAUUUGUCUGGPUAAUUCCGAUAACGAʍCGAGACUBUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUJCUPAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA#GUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUPCCCCAUGAACGAG7AAUPCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUʍAGUCCCUGCCCUUPGUACACACCGBCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUJGACUAUCUAGAGGAAGUAAAAGUCGUAЖCAAGGUUUCCGUAGGUGZZCCUGCGGAAGGAUCAUUA
Sequence (SHORT NAMES ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAUpAmUGCUUGpYCpYCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAApYGGCUCpAmUUAAApYCAGpYUAUGGUpUmCCpYUpUmGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUApAmUUCUAGpAmGCUAApUmApCmAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGApYGCGUGCApYUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGpYGACGGGGAAUCAGGGUUCGAUpUmCCGGAGApGmGGAGCCUGAGAAACGGCUACCACAUpCmCAAGGpAmAGGCAGCAGGCGCGCpAmAAUUACCCACUCCCGACCCGGGGApGmGUpAmGUGApCmGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUpYUAApAmUCCUUUAACGAGGpAmUCCAUUGGAGpGmGCAAGUCpYGGUGCCAGCAGCCGCGGpUmAAUUCCAGCUCCAAUApGmCGUApYApYUAAAGUUGCUGCAGUUpAmAAAAGCUCGUAGpYUpGmGApYCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGpCmGpUmUpYACUUUGAAAAAApYpYAGAGUGpYUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAApYAApYpGmGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUpYAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUpYCCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUpYGCCAAGAAUGUUUUCAUUAAUCAAGApAmCGAAAGUCGGAGGUUCGAAGACGApYCAGAUACCGUCGUAGUUCCGACCApYAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUApYGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCpYUAAUUpYGACpm1acp3YCAACACGGGAAACCUCACCCGGCpCmCGGACACGGACAGGApUmUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGpYmGpGmUGCAUGGCCGUUCUUAGUpYGGUGGAGCGAUUUGUCUGGpYUAAUUCCGAUAACGApAmCGAGACUpCmUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUpUmCUpYAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACApGmGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUpYCCCCAUGAACGAGpm7GAAUpYCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUpAmAGUCCCUGCCCUUpYGUACACACCGpCmCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUpUmGACUAUCUAGAGGAAGUAAAAGUCGUApm6ACAAGGUUUCCGUAGGUGpYmpYmCCUGCGGAAGGAUCAUUA
Sequence (MODOMICS CODE ENCODING)	UACCUGGUUGAUCCUGCCAGUAGCAU2000090551AUGCUUG2000009551UC2000009551UCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAA2000009551UGGCUC2000090551AUUAAA2000009551UCAG2000009551UUAUGGU2000090551UCC2000009551UU2000090551UGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUA2000090551AUUCUAG2000090551AGCUAA2000090551UA2000090551CAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGA2000009551UGCGUGCA2000009551UUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGG2000009551UGACGGGGAAUCAGGGUUCGAU2000090551UCCGGAGA2000090551GGGAGCCUGAGAAACGGCUACCACAU2000090551CCAAGG2000090551AAGGCAGCAGGCGCGC2000090551AAAUUACCCACUCCCGACCCGGGGA2000090551GGU2000090551AGUGA2000090551CGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACU2000009551UUAA2000090551AUCCUUUAACGAGG2000090551AUCCAUUGGAG2000090551GGCAAGUC2000009551UGGUGCCAGCAGCCGCGG2000090551UAAUUCCAGCUCCAAUA2000090551GCGUA2000009551UA2000009551UUAAAGUUGCUGCAGUU2000090551AAAAAGCUCGUAG2000009551UU2000090551GGA2000009551UCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAG2000090551CG2000090551UU2000009551UACUUUGAAAAAA2000009551U2000009551UAGAGUG2000009551UUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAA2000009551UAA2000009551U2000090551GGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAU2000009551UAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAU2000009551UCCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUU2000009551UGCCAAGAAUGUUUUCAUUAAUCAAGA2000090551ACGAAAGUCGGAGGUUCGAAGACGA2000009551UCAGAUACCGUCGUAGUUCCGACCA2000009551UAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUA2000009551UGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGC2000009551UUAAUU2000009551UGAC2001309551UCAACACGGGAAACCUCACCCGGC2000090551CCGGACACGGACAGGA2000090551UUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGG2000909551UG2000090551GUGCAUGGCCGUUCUUAGU2000009551UGGUGGAGCGAUUUGUCUGG2000009551UUAAUUCCGAUAACGA2000090551ACGAGACU2000090551CUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACU2000090551UCU2000009551UAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACA2000090551GGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAU2000009551UCCCCAUGAACGAG2000007551GAAU2000009551UCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUU2000090551AAGUCCCUGCCCUU2000009551UGUACACACCG2000090551CCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACU2000090551UGACUAUCUAGAGGAAGUAAAAGUCGUA2000006551ACAAGGUUUCCGUAGGUG2000909551U2000909551UCCUGCGGAAGGAUCAUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	28	35	37	94	100	106	110	117	120	122	157	164	170	172	199	207	358	380	388	414	420	436	461	464	469	523	527	541	552	560	578	595	600	602	619	632	634	637	741	743	745	758	759	766	805	808	809	861	909	947	974	999	1024	1117	1181	1187	1191	1215	1231	1269	1271	1290	1310	1326	1334	1378	1381	1428	1561	1575	1579	1614	1628	1639	1735	1763	1781	1782
Position in the sequence	27	34	36	93	99	105	109	116	119	121	159	166	172	174	210	218	406	428	436	462	468	484	509	512	517	572	576	590	601	609	627	644	649	651	668	681	683	686	797	799	801	814	815	822	863	866	867	918	966	1005	1032	1057	1082	1175	1239	1245	1249	1273	1289	1327	1329	1348	1368	1384	1392	1443	1446	1491	1626	1640	1644	1679	1693	1704	1805	1833	1851	1852
Modification positions	pAm	pY	pY	pY	pAm	pY	pY	pUm	pY	pUm	pAm	pAm	pUm	pCm	pY	pY	pY	pUm	pGm	pCm	pAm	pAm	pGm	pAm	pCm	pY	pAm	pAm	pGm	pY	pUm	pGm	pY	pY	pAm	pY	pGm	pY	pCm	pUm	pY	pY	pY	pY	pY	pY	pGm	pY	pY	pY	pAm	pY	pY	pY	pY	pY	pm1acp3Y	pCm	pUm	Ym	pGm	pY	pY	pAm	pCm	pUm	pY	pGm	pY	pm7G	pY	pAm	pY	pCm	pUm	pm6A	Ym	Ym
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS