General Data

RNA Type	tRNA
SOTerm	SO:0000264
Original Source	tdbR00000220
Secondary Structure	(((((((..((((.....[...)))).(((((.......)))))(((((....))))).(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GCCCGGA4GGUGGAADC#GDAGACACAAGGGAPU)AA*APCCCUCGGCGUUCGCGCUGUGCGGGTPCAAGUCCCGCUCCGGGUACCA
Sequence (SHORT NAMES ENCODING)	GCCCGGAps4UGGUGGAApDCpGmGpDAGACACAAGGGApYUpcmnm5UmAApms2i6AApYCCCUCGGCGUUCGCGCUGUGCGGGpm5UpYCAAGUCCCGCUCCGGGUACCA
Sequence (MODOMICS CODE ENCODING)	GCCCGGA2000074551UGGUGGAA2000008551UC2000090551GG2000008551UAGACACAAGGGA2000009551UU2009051551UAA2002161551AA2000009551UCCCUCGGCGUUCGCGCUGUGCGGG2000005551U2000009551UCAAGUCCCGCUCCGGGUACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GCCCGGA4GGUGGAADC-#GDA-GACACAAGGGAPU)AA*APCCCUCGGCGUUCGCGCUGU---------GCGGGTPCAAGUCCCGCUCCGGGUACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	8	16	18	20	32	34	37	39	54	55
Position in the sequence	8	16	18	20	33	35	38	40	65	66
Modification positions	s4U	D	Gm	D	Y	cmnm5Um	ms2i6A	Y	m5U	Y
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS