Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
SOTerm S0:0001000
Original Source AE001703
Sequence (UNICHARACTER ENCODING) UAUAUGGAGGGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAACACAUGCAAGUCGAGCGGGGGAAACUCCCUUCGGGGAGGAGUACCCAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCCUCCGGAGGGGGAUAACCAGGGGAAACCCUGGUUAAUACCCCAUACGCUCCAUCAACGCAAGUUGGUGGAGGAAAGGGGCGUUUGCCCCGCCGGAGGAGGGGCCCGCGGCCCAUCAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGACGACGGGUAGCCGGCCUGAGAGGGUGGUCGGCCACAGGGGCACUGAGACACGGGCCCCACUCUACGGGAGGCAGCAGUGGGGAAUCUUGGACAAUGGGGGAAACCCUGAUCCAGCGACGCCGCGUGCGGGACGAAGCCUUCGGGGUGUAAACCGCUGUGGCGGGGGAAGAAUAAGGUAGGGAGGAAAUGCCCUACCGAUGACGGUACCCCGCUAGAAAGCCCCGGCUAACUACGUGCCAGCAGCC7CGGUAAUACGUAGGGGGCAAGCGUUACCCGGAUUUACUGGGCGUAAAGGGGGCGUAGGCGGCCUGGUGUGUCGGAUGUGAAAUCCCACGGCUCAACCGUGGGGCUGCAUCCGAAACUACCAGGCUUGGGGGCGGUAGAGGGAGACGGAACUGCCGGUGUAGGGGUGAAAUCCGUAGAUAUCGGCAGGAACGCCGGUGGGGAAGCCGGUCUCCUGGGCCGACCCCGACGCUGAGGCCCGAAAGCCAGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAACGAUGCCCACUAGGUGUGGGGGGGUAAUCCCUCCGUGCUGAAGCUAACGCGUUAAGUGGGCCGCCUGGGGAGUACGCCCGCAAGGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCGUGUGGUUUAAUUGGAUL?UAAGCCAAGAACCUUACCAGGGCUUGACAUGCCGGUGGUACCUCCCCGAAAGGGGUAGGGACCCAGUCCUUCGGGACUGGGAGCCGGCACAGGUGLUGCACGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGCCCCUAGUUGCCAGCGGUUCGGCCGGGCACUCUAGGGGGACUGCCGGCGACGAGCCGGAGGAAGGAGGGGAUGACGUCAGGUACUCGUGCCCCUUAUGCCCUGGGCGACACACGCGCUACAAUGGGCGGUACAAUGGGUUGCGACCCCGCGAGGGGGAGCCAAUCCCCAAAGCCGCCCUCAGUUCGGAUCGCAGGCUGCAACCCGCCUGCGUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGλCCGUCABGCCACCCGAGUCGGGGGCUCCCGAAGACACCUACCCCAACCCGAAAGGGAGGGGGGGUGUCGAGGGAGAACCUGGCGAGGGGGGCGAAGUCGΔʍACAAGGUAGCCGUACCGGZZGGUGCGGCUGGAUCACCUCCUUUC
Sequence (SHORT NAMES ENCODING) UAUAUGGAGGGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAACACAUGCAAGUCGAGCGGGGGAAACUCCCUUCGGGGAGGAGUACCCAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCCUCCGGAGGGGGAUAACCAGGGGAAACCCUGGUUAAUACCCCAUACGCUCCAUCAACGCAAGUUGGUGGAGGAAAGGGGCGUUUGCCCCGCCGGAGGAGGGGCCCGCGGCCCAUCAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGACGACGGGUAGCCGGCCUGAGAGGGUGGUCGGCCACAGGGGCACUGAGACACGGGCCCCACUCUACGGGAGGCAGCAGUGGGGAAUCUUGGACAAUGGGGGAAACCCUGAUCCAGCGACGCCGCGUGCGGGACGAAGCCUUCGGGGUGUAAACCGCUGUGGCGGGGGAAGAAUAAGGUAGGGAGGAAAUGCCCUACCGAUGACGGUACCCCGCUAGAAAGCCCCGGCUAACUACGUGCCAGCAGCCpm7GCGGUAAUACGUAGGGGGCAAGCGUUACCCGGAUUUACUGGGCGUAAAGGGGGCGUAGGCGGCCUGGUGUGUCGGAUGUGAAAUCCCACGGCUCAACCGUGGGGCUGCAUCCGAAACUACCAGGCUUGGGGGCGGUAGAGGGAGACGGAACUGCCGGUGUAGGGGUGAAAUCCGUAGAUAUCGGCAGGAACGCCGGUGGGGAAGCCGGUCUCCUGGGCCGACCCCGACGCUGAGGCCCGAAAGCCAGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAACGAUGCCCACUAGGUGUGGGGGGGUAAUCCCUCCGUGCUGAAGCUAACGCGUUAAGUGGGCCGCCUGGGGAGUACGCCCGCAAGGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCGUGUGGUUUAAUUGGAUpm2Gpm5CUAAGCCAAGAACCUUACCAGGGCUUGACAUGCCGGUGGUACCUCCCCGAAAGGGGUAGGGACCCAGUCCUUCGGGACUGGGAGCCGGCACAGGUGpm2GUGCACGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGCCCCUAGUUGCCAGCGGUUCGGCCGGGCACUCUAGGGGGACUGCCGGCGACGAGCCGGAGGAAGGAGGGGAUGACGUCAGGUACUCGUGCCCCUUAUGCCCUGGGCGACACACGCGCUACAAUGGGCGGUACAAUGGGUUGCGACCCCGCGAGGGGGAGCCAAUCCCCAAAGCCGCCCUCAGUUCGGAUCGCAGGCUGCAACCCGCCUGCGUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGpm4CmCCGUCApCmGCCACCCGAGUCGGGGGCUCCCGAAGACACCUACCCCAACCCGAAAGGGAGGGGGGGUGUCGAGGGAGAACCUGGCGAGGGGGGCGAAGUCGpnm5ges2UpAmACAAGGUAGCCGUACCGGpYmpYmGGUGCGGCUGGAUCACCUCCUUUC
Sequence (MODOMICS CODE ENCODING) UAUAUGGAGGGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAACACAUGCAAGUCGAGCGGGGGAAACUCCCUUCGGGGAGGAGUACCCAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCCUCCGGAGGGGGAUAACCAGGGGAAACCCUGGUUAAUACCCCAUACGCUCCAUCAACGCAAGUUGGUGGAGGAAAGGGGCGUUUGCCCCGCCGGAGGAGGGGCCCGCGGCCCAUCAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGACGACGGGUAGCCGGCCUGAGAGGGUGGUCGGCCACAGGGGCACUGAGACACGGGCCCCACUCUACGGGAGGCAGCAGUGGGGAAUCUUGGACAAUGGGGGAAACCCUGAUCCAGCGACGCCGCGUGCGGGACGAAGCCUUCGGGGUGUAAACCGCUGUGGCGGGGGAAGAAUAAGGUAGGGAGGAAAUGCCCUACCGAUGACGGUACCCCGCUAGAAAGCCCCGGCUAACUACGUGCCAGCAGCC2000007551GCGGUAAUACGUAGGGGGCAAGCGUUACCCGGAUUUACUGGGCGUAAAGGGGGCGUAGGCGGCCUGGUGUGUCGGAUGUGAAAUCCCACGGCUCAACCGUGGGGCUGCAUCCGAAACUACCAGGCUUGGGGGCGGUAGAGGGAGACGGAACUGCCGGUGUAGGGGUGAAAUCCGUAGAUAUCGGCAGGAACGCCGGUGGGGAAGCCGGUCUCCUGGGCCGACCCCGACGCUGAGGCCCGAAAGCCAGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAACGAUGCCCACUAGGUGUGGGGGGGUAAUCCCUCCGUGCUGAAGCUAACGCGUUAAGUGGGCCGCCUGGGGAGUACGCCCGCAAGGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCGUGUGGUUUAAUUGGAU2000002551G2000005551CUAAGCCAAGAACCUUACCAGGGCUUGACAUGCCGGUGGUACCUCCCCGAAAGGGGUAGGGACCCAGUCCUUCGGGACUGGGAGCCGGCACAGGUG2000002551GUGCACGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGCCCCUAGUUGCCAGCGGUUCGGCCGGGCACUCUAGGGGGACUGCCGGCGACGAGCCGGAGGAAGGAGGGGAUGACGUCAGGUACUCGUGCCCCUUAUGCCCUGGGCGACACACGCGCUACAAUGGGCGGUACAAUGGGUUGCGACCCCGCGAGGGGGAGCCAAUCCCCAAAGCCGCCCUCAGUUCGGAUCGCAGGCUGCAACCCGCCUGCGUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCG2000904551CCCGUCA2000090551CGCCACCCGAGUCGGGGGCUCCCGAAGACACCUACCCCAACCCGAAAGGGAGGGGGGGUGUCGAGGGAGAACCUGGCGAGGGGGGCGAAGUCG2021510551U2000090551AACAAGGUAGCCGUACCGG2000909551U2000909551UGGUGCGGCUGGAUCACCUCCUUUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment 527 966 967 1051 1402 1409 1498 1499 1518 1519
Position in the sequence 529 966 967 1063 1414 1421 1514 1515 1534 1535
Modification positions pm7G pm2G pm5C pm2G pm4Cm pCm pnm5ges2U pAm Ym Ym
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS