General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000357325
Gene ID:	ENSG00000143321
Gene Name:	HDGF
Sequence (UNICHARACTER ENCODING)	CAAACACAAACAACUGCACGAGCGCGCACCCACCGCGCCGGAGCCUUGCCCCGAUCCGCGCCCGCCCCGUCCGUGCGGCGCGCGGGCGGAGACGCCGUGGCCGCGCCGGAGCUCGGGCCGGGGGCCACCAUCGAGGCGGGGGCCGCGCGAGGGCCGGAGCGGAGCGGCGCCGCCACCGCCGCACGCGCAAACUUGGGCUCGCGCUUCCCGGCCCGGCGCGGAGCCCGGGGCGCCCGGAGCCCCGCCAUGUCGCGAUCCAACCGGCAGAAGGAGUACЖAAUGCGGGGACCUGGUGUUCGCCAAGAUGAAGGGCUACCCACACUGGCCGGCBCGGAUUGACGAGAUGCCUGAGGCUGCCGUGAAAUCAACAGCCAACAAAUACCAAGUCUUUUUUUUCGGGACCCACGAGACGGCAUUCCUGGGCCCCAAAGACCUCUUCCCUUACGAGGAAUCCAAGGAGAAGUUUGGCAAGCCCAACAAGAGGAAAGGGUUCAGCGAGGGGCUGUGGGAGAUCGAGAACAACCCUACUGUCAAGGCUUCCGGCUAUCAGUCCUCCCAGAAAAAGAGCUGUGUGGAAGAGCCUGAACCAGAGCCCGAAGCUGCAGAGGGUGACGGUGAUAAGAAGGGGAAUGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCUGGUCAUUGAUGAGCCAGCCAAGGAGAAGAACGAGAAAGGAGCGUUGAAGAGGAGAGCAGGGGACUUGCUGGAGGACUCUCCUAAACGUCCCAAGGAGGCAGAAAACCCUGAAGGAGAGGAGAAGGAGGCAGCCACCUUGGAGGUUGAGAGGCCCCUUCCUAUGGAGGUGGAAAAGAAUAGCACCCCCUCUGAGCCCGGCUCUGGCCGGGGGCCUCCCCAAGAGGAAGAAGAGGAGGAGGAUGAAGAGGAAGAGGCUACCAAGGAAGAUGCUGAGGCCCCAGGCAUCAGAGAUCAUGAGAGCCUGUAGCCACCAAUGUUUCAAGAGGAGCCCCCACCCUGUUCCUGCUGCUGUCUGGGUGCUACUGGGGAAACUGGCCAUGGCCUGCAAЖ?UGGGAACCCCUUUCCCACCCCAACCUGCUCUCCUCUUCUACUCACUUUUCCCACUCCAAGCCCAGCCCAUGGAGAUUGACCUGGAUGGGGCAGGCCACCUGGCUCUCACCUCUAGGUCCCCAUACUCCUAUGAUCUGAGUCAGAGCCAUGUCUUCUCCCUGGAAUGAGUUGAGGCCACUGUGUUCCUUCCGCUUGGAGCUAUUUUCCAGGCUUCUGCUGGGGCCUGGGACAACUGCUCCCACCPCCUGACACCCUUCUCCCACUCUCCUAGGCAUUCUGGACCUCUGGGUUGGGAUCAGGGGUAGGAAUGGAAAGGAUGGAGCAUCAACAGCAGGGUGGGCUUGUGGGGCCUGGGAGGGGCAAUCCUCAAAUGCGGGGUGGGGGCAGCACAGGAGGGCGGCCUCCUUCUGAGCUCCUGUCCCCUGCUACACCUAUUAUCCCAGCUGCCUAGAUUCAGGGAAAGUGGGACAGCUUGUAGGGGAGGGGCUCCUUUCCAUAAAUCCUUGAUGAUUGACAACACCCAUUUUUCCUUUUGCCGACCCCAAGAGUUUUGGGAGUUGUAGUUAAUCAUCAAGAGAAUUUGGGGCUUCCAAGUUGUUCGGGCCAAGGACCUGAGЖCCUGAAGGGUUGACUPUACCCAUUUGGGUGGGAGUGUUGAGCAUCUGUCCCCCUPUAGAUCUCUGAAGCCACAAAUAGGAUGCUUGGGAAGACUCCUAGCUGUCCUUUUUCCUCUCCACACAGUGCUCAAGGCCAGCUUAUAGUCAUAUAUAUCACCCAGACAUAAAGGAAAAGACACAUUUUUUAGGAAAUGUUUUUAAUAAAAGAAAAUUACAAAAAAAAAUUUUAAAGACCCCUAACCCUUUGUGUGCUCUCCAUUCUGCUCCUUCCCCAUCGUUGCCCCCAUUUCUGAGGUGCACUGGGAGGCUCCCCUUCUAUUUGGGGCUUGAUGACUUUCUUUUUGUAGCUGGGGCUUUGAUGUUCCUUCCAGUGUCAUUUCUCAPCCACAUACCCUGЖCCUGGCCCCCUCAGUGUUGUCACCAGAUCUGAUUUGUAACCCACUGAGAGGACAGAGAGAAAUAAGUGCCCUCUCCCACCCUCUUCCUACUGGUCUCUCUAUGCCUCUCUACAGUCUCGUCUCUUUUACCCUGGCCCCUCUCCCUUGGGCUCUGAUGAAAAAUUGCUGACUGUAGCUUUGGAAGUUUAGCUCUGAGAЖCCGUAGAUGAUUUCAGUUCUAGGAAAAUAAAACCCGUUGAUUACUA
Sequence (SHORT NAMES ENCODING)	CAAACACAAACAACUGCACGAGCGCGCACCCACCGCGCCGGAGCCUUGCCCCGAUCCGCGCCCGCCCCGUCCGUGCGGCGCGCGGGCGGAGACGCCGUGGCCGCGCCGGAGCUCGGGCCGGGGGCCACCAUCGAGGCGGGGGCCGCGCGAGGGCCGGAGCGGAGCGGCGCCGCCACCGCCGCACGCGCAAACUUGGGCUCGCGCUUCCCGGCCCGGCGCGGAGCCCGGGGCGCCCGGAGCCCCGCCAUGUCGCGAUCCAACCGGCAGAAGGAGUACm6AAAUGCGGGGACCUGGUGUUCGCCAAGAUGAAGGGCUACCCACACUGGCCGGCCmCGGAUUGACGAGAUGCCUGAGGCUGCCGUGAAAUCAACAGCCAACAAAUACCAAGUCUUUUUUUUCGGGACCCACGAGACGGCAUUCCUGGGCCCCAAAGACCUCUUCCCUUACGAGGAAUCCAAGGAGAAGUUUGGCAAGCCCAACAAGAGGAAAGGGUUCAGCGAGGGGCUGUGGGAGAUCGAGAACAACCCUACUGUCAAGGCUUCCGGCUAUCAGUCCUCCCAGAAAAAGAGCUGUGUGGAAGAGCCUGAACCAGAGCCCGAAGCUGCAGAGGGUGACGGUGAUAAGAAGGGGAAUGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCUGGUCAUUGAUGAGCCAGCCAAGGAGAAGAACGAGAAAGGAGCGUUGAAGAGGAGAGCAGGGGACUUGCUGGAGGACUCUCCUAAACGUCCCAAGGAGGCAGAAAACCCUGAAGGAGAGGAGAAGGAGGCAGCCACCUUGGAGGUUGAGAGGCCCCUUCCUAUGGAGGUGGAAAAGAAUAGCACCCCCUCUGAGCCCGGCUCUGGCCGGGGGCCUCCCCAAGAGGAAGAAGAGGAGGAGGAUGAAGAGGAAGAGGCUACCAAGGAAGAUGCUGAGGCCCCAGGCAUCAGAGAUCAUGAGAGCCUGUAGCCACCAAUGUUUCAAGAGGAGCCCCCACCCUGUUCCUGCUGCUGUCUGGGUGCUACUGGGGAAACUGGCCAUGGCCUGCAAm6Am5CUGGGAACCCCUUUCCCACCCCAACCUGCUCUCCUCUUCUACUCACUUUUCCCACUCCAAGCCCAGCCCAUGGAGAUUGACCUGGAUGGGGCAGGCCACCUGGCUCUCACCUCUAGGUCCCCAUACUCCUAUGAUCUGAGUCAGAGCCAUGUCUUCUCCCUGGAAUGAGUUGAGGCCACUGUGUUCCUUCCGCUUGGAGCUAUUUUCCAGGCUUCUGCUGGGGCCUGGGACAACUGCUCCCACCYCCUGACACCCUUCUCCCACUCUCCUAGGCAUUCUGGACCUCUGGGUUGGGAUCAGGGGUAGGAAUGGAAAGGAUGGAGCAUCAACAGCAGGGUGGGCUUGUGGGGCCUGGGAGGGGCAAUCCUCAAAUGCGGGGUGGGGGCAGCACAGGAGGGCGGCCUCCUUCUGAGCUCCUGUCCCCUGCUACACCUAUUAUCCCAGCUGCCUAGAUUCAGGGAAAGUGGGACAGCUUGUAGGGGAGGGGCUCCUUUCCAUAAAUCCUUGAUGAUUGACAACACCCAUUUUUCCUUUUGCCGACCCCAAGAGUUUUGGGAGUUGUAGUUAAUCAUCAAGAGAAUUUGGGGCUUCCAAGUUGUUCGGGCCAAGGACCUGAGm6ACCUGAAGGGUUGACUYUACCCAUUUGGGUGGGAGUGUUGAGCAUCUGUCCCCCUYUAGAUCUCUGAAGCCACAAAUAGGAUGCUUGGGAAGACUCCUAGCUGUCCUUUUUCCUCUCCACACAGUGCUCAAGGCCAGCUUAUAGUCAUAUAUAUCACCCAGACAUAAAGGAAAAGACACAUUUUUUAGGAAAUGUUUUUAAUAAAAGAAAAUUACAAAAAAAAAUUUUAAAGACCCCUAACCCUUUGUGUGCUCUCCAUUCUGCUCCUUCCCCAUCGUUGCCCCCAUUUCUGAGGUGCACUGGGAGGCUCCCCUUCUAUUUGGGGCUUGAUGACUUUCUUUUUGUAGCUGGGGCUUUGAUGUUCCUUCCAGUGUCAUUUCUCAYCCACAUACCCUGm6ACCUGGCCCCCUCAGUGUUGUCACCAGAUCUGAUUUGUAACCCACUGAGAGGACAGAGAGAAAUAAGUGCCCUCUCCCACCCUCUUCCUACUGGUCUCUCUAUGCCUCUCUACAGUCUCGUCUCUUUUACCCUGGCCCCUCUCCCUUGGGCUCUGAUGAAAAAUUGCUGACUGUAGCUUUGGAAGUUUAGCUCUGAGAm6ACCGUAGAUGAUUUCAGUUCUAGGAAAAUAAAACCCGUUGAUUACUA
Sequence (MODOMICS CODE ENCODING)	CAAACACAAACAACUGCACGAGCGCGCACCCACCGCGCCGGAGCCUUGCCCCGAUCCGCGCCCGCCCCGUCCGUGCGGCGCGCGGGCGGAGACGCCGUGGCCGCGCCGGAGCUCGGGCCGGGGGCCACCAUCGAGGCGGGGGCCGCGCGAGGGCCGGAGCGGAGCGGCGCCGCCACCGCCGCACGCGCAAACUUGGGCUCGCGCUUCCCGGCCCGGCGCGGAGCCCGGGGCGCCCGGAGCCCCGCCAUGUCGCGAUCCAACCGGCAGAAGGAGUAC2000000006AAAUGCGGGGACCUGGUGUUCGCCAAGAUGAAGGGCUACCCACACUGGCCGGC2000000090CCGGAUUGACGAGAUGCCUGAGGCUGCCGUGAAAUCAACAGCCAACAAAUACCAAGUCUUUUUUUUCGGGACCCACGAGACGGCAUUCCUGGGCCCCAAAGACCUCUUCCCUUACGAGGAAUCCAAGGAGAAGUUUGGCAAGCCCAACAAGAGGAAAGGGUUCAGCGAGGGGCUGUGGGAGAUCGAGAACAACCCUACUGUCAAGGCUUCCGGCUAUCAGUCCUCCCAGAAAAAGAGCUGUGUGGAAGAGCCUGAACCAGAGCCCGAAGCUGCAGAGGGUGACGGUGAUAAGAAGGGGAAUGCAGAGGGCAGCAGCGACGAGGAAGGGAAGCUGGUCAUUGAUGAGCCAGCCAAGGAGAAGAACGAGAAAGGAGCGUUGAAGAGGAGAGCAGGGGACUUGCUGGAGGACUCUCCUAAACGUCCCAAGGAGGCAGAAAACCCUGAAGGAGAGGAGAAGGAGGCAGCCACCUUGGAGGUUGAGAGGCCCCUUCCUAUGGAGGUGGAAAAGAAUAGCACCCCCUCUGAGCCCGGCUCUGGCCGGGGGCCUCCCCAAGAGGAAGAAGAGGAGGAGGAUGAAGAGGAAGAGGCUACCAAGGAAGAUGCUGAGGCCCCAGGCAUCAGAGAUCAUGAGAGCCUGUAGCCACCAAUGUUUCAAGAGGAGCCCCCACCCUGUUCCUGCUGCUGUCUGGGUGCUACUGGGGAAACUGGCCAUGGCCUGCAA2000000006A2000000005CUGGGAACCCCUUUCCCACCCCAACCUGCUCUCCUCUUCUACUCACUUUUCCCACUCCAAGCCCAGCCCAUGGAGAUUGACCUGGAUGGGGCAGGCCACCUGGCUCUCACCUCUAGGUCCCCAUACUCCUAUGAUCUGAGUCAGAGCCAUGUCUUCUCCCUGGAAUGAGUUGAGGCCACUGUGUUCCUUCCGCUUGGAGCUAUUUUCCAGGCUUCUGCUGGGGCCUGGGACAACUGCUCCCACC2000000009UCCUGACACCCUUCUCCCACUCUCCUAGGCAUUCUGGACCUCUGGGUUGGGAUCAGGGGUAGGAAUGGAAAGGAUGGAGCAUCAACAGCAGGGUGGGCUUGUGGGGCCUGGGAGGGGCAAUCCUCAAAUGCGGGGUGGGGGCAGCACAGGAGGGCGGCCUCCUUCUGAGCUCCUGUCCCCUGCUACACCUAUUAUCCCAGCUGCCUAGAUUCAGGGAAAGUGGGACAGCUUGUAGGGGAGGGGCUCCUUUCCAUAAAUCCUUGAUGAUUGACAACACCCAUUUUUCCUUUUGCCGACCCCAAGAGUUUUGGGAGUUGUAGUUAAUCAUCAAGAGAAUUUGGGGCUUCCAAGUUGUUCGGGCCAAGGACCUGAG2000000006ACCUGAAGGGUUGACU2000000009UUACCCAUUUGGGUGGGAGUGUUGAGCAUCUGUCCCCCU2000000009UUAGAUCUCUGAAGCCACAAAUAGGAUGCUUGGGAAGACUCCUAGCUGUCCUUUUUCCUCUCCACACAGUGCUCAAGGCCAGCUUAUAGUCAUAUAUAUCACCCAGACAUAAAGGAAAAGACACAUUUUUUAGGAAAUGUUUUUAAUAAAAGAAAAUUACAAAAAAAAAUUUUAAAGACCCCUAACCCUUUGUGUGCUCUCCAUUCUGCUCCUUCCCCAUCGUUGCCCCCAUUUCUGAGGUGCACUGGGAGGCUCCCCUUCUAUUUGGGGCUUGAUGACUUUCUUUUUGUAGCUGGGGCUUUGAUGUUCCUUCCAGUGUCAUUUCUCA2000000009UCCACAUACCCUG2000000006ACCUGGCCCCCUCAGUGUUGUCACCAGAUCUGAUUUGUAACCCACUGAGAGGACAGAGAGAAAUAAGUGCCCUCUCCCACCCUCUUCCUACUGGUCUCUCUAUGCCUCUCUACAGUCUCGUCUCUUUUACCCUGGCCCCUCUCCCUUGGGCUCUGAUGAAAAAUUGCUGACUGUAGCUUUGGAAGUUUAGCUCUGAGA2000000006ACCGUAGAUGAUUUCAGUUCUAGGAAAAUAAAACCCGUUGAUUACUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	277	330	1051	1052	1296	1669	1685	1724	2052	2065	2263
Modification Positions	m6A	Cm	m6A	m5C	Y	m6A	Y	Y	Y	m6A	m6A
Genomic Coordinates	1:156751399:-	1:156751346:-	1:156743367:-	1:156743366:-	1:156743122:-	1:156742749:-	1:156742733:-	1:156742694:-	1:156742366:-	1:156742353:-	1:156742155:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	ArijeGVTwYBw BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8