General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000373703
Gene ID:	ENSG00000162517
Gene Name:	PEF1
Sequence (UNICHARACTER ENCODING)	GUCAGAAUCACCAUGGCCAGCUAUCCUUACCGGCAGGGCUGCCCAGGAGCUGCAGGACAAGCACCAGGAGCCCCPC?GGGUAGCUACUACCCUGGACCCCCCAAUAGUGGAGGGCAGUAUGGUAGUGGGCUACCCCCUGGUGGUGGUUAUGGGGGUCCUGCCCCUGGAGGGCCUUAUGGACCACCAGCUGGUGGAGGGCCCUAUGGACACCCCAAUCCUGGGAUGUUCCCCUCUGGAACUCCAGGAGGACCAUAUGGCGGUGCAGCUCCCGGGGGCCCCUAUGGUCAGCCACCPCCAAGUUCCUACGGUGCCCAGCAGCCUGGGCUPUAUGGACAGGGUGGCGCCCCUCCCAAUGUGGAUCCUGAGGCCUACUCCUGGUUCCAGUCGGUGGACUCAGAUCACAGUGGCUAUAUCUCCAUGAAGGAGCUAAAGCAGGCCCUGGUCAACUGCAAUUGGUCUUCAUUCAAUGAUGAGЖCCUGCCUCAUGAUGAUAAACAUGUUUGACAAGACCAAGUCAGGCCGCAUCGAUGUCUACGGCUUCUCAGCCCUGUGGAAAUUCAUCCAGCAGUGGAAGAACCUCUUCCAGCAGUAUGACCGGGACCGCUCGGGCUCCAUUAGCUACACAGAGCUGCAGCAAGCUCUGUCCCЖAAUGGGCUACAACCUGAGCCCCCAGUUCACCCAGCUUCUGGUCUCCCGCUACUGCCCACGCUCUGCCAAUCCUGCCAUGCAGCUUGACCGCUUCAPCCAGGUGUGCACCCAGCUGCAGGUGCUGACAGAGGCCUUCCGGGAGAAGGACACAGCUGUACAAGGCAACAUUCGGCUCЖGCUUCGAGGACUUCGUCACCAUGACAGCUUCUCGGЖUGCUAUGACCCAACCAUCUGUGGAGAGUGGAGUGCACCAGGGЖCCUUUCCUGGCUUCUUAGAGUGAGAGAAGUAUGUGGЖCAUCUCUUCUUUUCCUGUCCCUCUAGAAGAЖCAUUCUCCCUUGCUUGAUGCAACACUGUUCCAAAAGAGGGUGGAGAGUCCUGCAUCAUAGCCACCAAAUAGUGAGGЖCCGGGGCUGAGGCCACACAGAUAGGGGCCUGAUGGAGGAGAGGAUAGAAGUUGAAUGUCCUGAUGGCCAUGAGCAGUUGAGUGGCACAGCCUGGCACCAGGAGCAGGUCCUUGUAAUGGAGUUAGUGUCCAGUCЖGCUGAGCUCCACCCUGAUGCCAGUGGUGAGUGUUCAUCGGCCUGUUACCGUUAGUACCUGUGUUCCCUCACCAGGCCAPCCUGUCAAACGAGCCCAUUUUCUCCAAAGUGGAAUCUGACCAAGCAUGAGAGAGAUCUGUCUAUGGGACCAGUGGCUUGGAUUCUGCCACACCCAUAAAUCCUUGUGUGUUAЖCUUCUAGCUGCCUGGGGCUGGCCCUGCUCAGACAAAUCUGCUCCCUGGGCAUCUUUGGCCAGGCUUCUGCCCUCUGCAGCUGGGACCCCUCACUUGCCUGCCAUGCUCUGCUCGGCUUCAGUCUCCAGGAGACAGUGGUCACCUCUCCCUGCCAAUACUUUUUUUЖAUUUGCAUUUUUUUUCAUUUGGGGCCAAAAGUCCAGUGAAAUUGUAAGCUUCAAUAAAAGGAUGAAACUCUGGA
Sequence (SHORT NAMES ENCODING)	GUCAGAAUCACCAUGGCCAGCUAUCCUUACCGGCAGGGCUGCCCAGGAGCUGCAGGACAAGCACCAGGAGCCCCYCm5CGGGUAGCUACUACCCUGGACCCCCCAAUAGUGGAGGGCAGUAUGGUAGUGGGCUACCCCCUGGUGGUGGUUAUGGGGGUCCUGCCCCUGGAGGGCCUUAUGGACCACCAGCUGGUGGAGGGCCCUAUGGACACCCCAAUCCUGGGAUGUUCCCCUCUGGAACUCCAGGAGGACCAUAUGGCGGUGCAGCUCCCGGGGGCCCCUAUGGUCAGCCACCYCCAAGUUCCUACGGUGCCCAGCAGCCUGGGCUYUAUGGACAGGGUGGCGCCCCUCCCAAUGUGGAUCCUGAGGCCUACUCCUGGUUCCAGUCGGUGGACUCAGAUCACAGUGGCUAUAUCUCCAUGAAGGAGCUAAAGCAGGCCCUGGUCAACUGCAAUUGGUCUUCAUUCAAUGAUGAGm6ACCUGCCUCAUGAUGAUAAACAUGUUUGACAAGACCAAGUCAGGCCGCAUCGAUGUCUACGGCUUCUCAGCCCUGUGGAAAUUCAUCCAGCAGUGGAAGAACCUCUUCCAGCAGUAUGACCGGGACCGCUCGGGCUCCAUUAGCUACACAGAGCUGCAGCAAGCUCUGUCCCm6AAAUGGGCUACAACCUGAGCCCCCAGUUCACCCAGCUUCUGGUCUCCCGCUACUGCCCACGCUCUGCCAAUCCUGCCAUGCAGCUUGACCGCUUCAYCCAGGUGUGCACCCAGCUGCAGGUGCUGACAGAGGCCUUCCGGGAGAAGGACACAGCUGUACAAGGCAACAUUCGGCUCm6AGCUUCGAGGACUUCGUCACCAUGACAGCUUCUCGGm6AUGCUAUGACCCAACCAUCUGUGGAGAGUGGAGUGCACCAGGGm6ACCUUUCCUGGCUUCUUAGAGUGAGAGAAGUAUGUGGm6ACAUCUCUUCUUUUCCUGUCCCUCUAGAAGAm6ACAUUCUCCCUUGCUUGAUGCAACACUGUUCCAAAAGAGGGUGGAGAGUCCUGCAUCAUAGCCACCAAAUAGUGAGGm6ACCGGGGCUGAGGCCACACAGAUAGGGGCCUGAUGGAGGAGAGGAUAGAAGUUGAAUGUCCUGAUGGCCAUGAGCAGUUGAGUGGCACAGCCUGGCACCAGGAGCAGGUCCUUGUAAUGGAGUUAGUGUCCAGUCm6AGCUGAGCUCCACCCUGAUGCCAGUGGUGAGUGUUCAUCGGCCUGUUACCGUUAGUACCUGUGUUCCCUCACCAGGCCAYCCUGUCAAACGAGCCCAUUUUCUCCAAAGUGGAAUCUGACCAAGCAUGAGAGAGAUCUGUCUAUGGGACCAGUGGCUUGGAUUCUGCCACACCCAUAAAUCCUUGUGUGUUAm6ACUUCUAGCUGCCUGGGGCUGGCCCUGCUCAGACAAAUCUGCUCCCUGGGCAUCUUUGGCCAGGCUUCUGCCCUCUGCAGCUGGGACCCCUCACUUGCCUGCCAUGCUCUGCUCGGCUUCAGUCUCCAGGAGACAGUGGUCACCUCUCCCUGCCAAUACUUUUUUUm6AAUUUGCAUUUUUUUUCAUUUGGGGCCAAAAGUCCAGUGAAAUUGUAAGCUUCAAUAAAAGGAUGAAACUCUGGA
Sequence (MODOMICS CODE ENCODING)	GUCAGAAUCACCAUGGCCAGCUAUCCUUACCGGCAGGGCUGCCCAGGAGCUGCAGGACAAGCACCAGGAGCCCC2000000009UC2000000005CGGGUAGCUACUACCCUGGACCCCCCAAUAGUGGAGGGCAGUAUGGUAGUGGGCUACCCCCUGGUGGUGGUUAUGGGGGUCCUGCCCCUGGAGGGCCUUAUGGACCACCAGCUGGUGGAGGGCCCUAUGGACACCCCAAUCCUGGGAUGUUCCCCUCUGGAACUCCAGGAGGACCAUAUGGCGGUGCAGCUCCCGGGGGCCCCUAUGGUCAGCCACC2000000009UCCAAGUUCCUACGGUGCCCAGCAGCCUGGGCU2000000009UUAUGGACAGGGUGGCGCCCCUCCCAAUGUGGAUCCUGAGGCCUACUCCUGGUUCCAGUCGGUGGACUCAGAUCACAGUGGCUAUAUCUCCAUGAAGGAGCUAAAGCAGGCCCUGGUCAACUGCAAUUGGUCUUCAUUCAAUGAUGAG2000000006ACCUGCCUCAUGAUGAUAAACAUGUUUGACAAGACCAAGUCAGGCCGCAUCGAUGUCUACGGCUUCUCAGCCCUGUGGAAAUUCAUCCAGCAGUGGAAGAACCUCUUCCAGCAGUAUGACCGGGACCGCUCGGGCUCCAUUAGCUACACAGAGCUGCAGCAAGCUCUGUCCC2000000006AAAUGGGCUACAACCUGAGCCCCCAGUUCACCCAGCUUCUGGUCUCCCGCUACUGCCCACGCUCUGCCAAUCCUGCCAUGCAGCUUGACCGCUUCA2000000009UCCAGGUGUGCACCCAGCUGCAGGUGCUGACAGAGGCCUUCCGGGAGAAGGACACAGCUGUACAAGGCAACAUUCGGCUC2000000006AGCUUCGAGGACUUCGUCACCAUGACAGCUUCUCGG2000000006AUGCUAUGACCCAACCAUCUGUGGAGAGUGGAGUGCACCAGGG2000000006ACCUUUCCUGGCUUCUUAGAGUGAGAGAAGUAUGUGG2000000006ACAUCUCUUCUUUUCCUGUCCCUCUAGAAGA2000000006ACAUUCUCCCUUGCUUGAUGCAACACUGUUCCAAAAGAGGGUGGAGAGUCCUGCAUCAUAGCCACCAAAUAGUGAGG2000000006ACCGGGGCUGAGGCCACACAGAUAGGGGCCUGAUGGAGGAGAGGAUAGAAGUUGAAUGUCCUGAUGGCCAUGAGCAGUUGAGUGGCACAGCCUGGCACCAGGAGCAGGUCCUUGUAAUGGAGUUAGUGUCCAGUC2000000006AGCUGAGCUCCACCCUGAUGCCAGUGGUGAGUGUUCAUCGGCCUGUUACCGUUAGUACCUGUGUUCCCUCACCAGGCCA2000000009UCCUGUCAAACGAGCCCAUUUUCUCCAAAGUGGAAUCUGACCAAGCAUGAGAGAGAUCUGUCUAUGGGACCAGUGGCUUGGAUUCUGCCACACCCAUAAAUCCUUGUGUGUUA2000000006ACUUCUAGCUGCCUGGGGCUGGCCCUGCUCAGACAAAUCUGCUCCCUGGGCAUCUUUGGCCAGGCUUCUGCCCUCUGCAGCUGGGACCCCUCACUUGCCUGCCAUGCUCUGCUCGGCUUCAGUCUCCAGGAGACAGUGGUCACCUCUCCCUGCCAAUACUUUUUUU2000000006AAUUUGCAUUUUUUUUCAUUUGGGGCCAAAAGUCCAGUGAAAUUGUAAGCUUCAAUAAAAGGAUGAAACUCUGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	75	77	294	327	475	647	743	823	859	902	939	970	1047	1182	1261	1374	1540
Modification Positions	Y	m5C	Y	Y	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	1:31635484:-	1:31635482:-	1:31635265:-	1:31635232:-	1:31633177:-	1:31630833:-	1:31630737:-	1:31630657:-	1:31630621:-	1:31630578:-	1:31630541:-	1:31630510:-	1:31630433:-	1:31630298:-	1:31630219:-	1:31630106:-	1:31629940:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U ArijeGVTwYBw BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KTLz8piFYdwC KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL