General Data

RNA Type	tRNA
SOTerm	SO:0000268
Original Source	tdbR00000308
Secondary Structure	(((((((..(((.....[...)))((((((.......))))))....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGCJCLUUKGUCPAGGGGDAUGAUUCUCGCPUNGGKPGCGAGAG7D??CGGGPPCAѢAUCCCGGACGAGCCCCCA
Sequence (SHORT NAMES ENCODING)	GGCpUmCpm2GUUpm1GGUCpYAGGGGpDAUGAUUCUCGCpYUxUGGpm1GpYGCGAGAGpm7GpDpm5Cpm5CCGGGpYpYCApm1AAUCCCGGACGAGCCCCCA
Sequence (MODOMICS CODE ENCODING)	GGC2000090551UC2000002551GUU2000001551GGUC2000009551UAGGGG2000008551UAUGAUUCUCGC2000009551UU2000000999UGG2000001551G2000009551UGCGAGAG2000007551G2000008551U2000005551C2000005551CCGGG2000009551U2000009551UCA2000001551AAUCCCGGACGAGCCCCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGCJCLUUKGUCPAGG--GGD--AUGAUUCUCGCPUNGGKPGCGAGAG7D?-------------------?CGGGPPCAѢAUCCCGGACGAGCCCCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	4	6	9	13	20	32	34	37	38	45A	45B	45C	49	54	55	58
Position in the sequence	4	6	9	13	19	31	33	36	37	45	46	47	48	53	54	57
Modification positions	Um	m2G	m1G	Y	D	Y	xU	m1G	Y	m7G	D	m5C	m5C	Y	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS