General Data

RNA Type	tRNA
SOTerm	SO:0000269
Original Source	tdbR00000423
Secondary Structure	.(((((((..(((.....[....)))((((((.......))))))((((...))))..(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	AGUAGUCGUGGCMGAGDGGDDAAGGCRAPGGAЩUIGAЧAZCCAUJGGGGUЩUCCCCG?GCAGGTPCGѢAUCCUGCCGACUACGCCA
Sequence (SHORT NAMES ENCODING)	AGUAGUCGUGGCpac4CGAGpDGGpDpDAAGGCpm2,2GApYGGApm3CUpIGApi6AApYmCCAUpUmGGGGUpm3CUCCCCGpm5CGCAGGpm5UpYCGpm1AAUCCUGCCGACUACGCCA
Sequence (MODOMICS CODE ENCODING)	AGUAGUCGUGGC2000042551CGAG2000008551UGG2000008551U2000008551UAAGGC2000022551GA2000009551UGGA2000003551CU2000009551AGA2000061551AA2000909551UCCAU2000090551UGGGGU2000003551CUCCCCG2000005551CGCAGG2000005551U2000009551UCG2000001551AAUCCUGCCGACUACGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	AGUAGUCGUGGCMGAGD--GGDD-AAGGCRAPGGAЩUIGAЧAZCCAUJGGGGUЩUCCCCG?----------GCAGGTPCGѢAUCCUGCCGACUACGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	12	16	20	20A	26	28	32	34	37	39	44	45E	45L	54	55	58
Position in the sequence	13	17	20	21	27	29	33	35	38	40	45	51	58	64	65	68
Modification positions	ac4C	D	D	D	m2,2G	Y	m3C	I	i6A	Ym	Um	m3C	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS