General Data

RNA Type	tRNA
SOTerm	SO:0000273
Original Source	tdbR00000476
Secondary Structure	(((((((..(((.....[....))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GUUUCCGUAGUGPAGDGGDDAUCACLPUCGCCU.ACACGCGAAAG7D??CCGGUPCGѢAACCGGGCGGAAACACCA
Sequence (SHORT NAMES ENCODING)	GUUUCCGUAGUGpYAGpDGGpDpDAUCACpm2GpYUCGCCUNACACGCGAAAGpm7GpDpm5Cpm5CCCGGUpYCGpm1AAACCGGGCGGAAACACCA
Sequence (MODOMICS CODE ENCODING)	GUUUCCGUAGUG2000009551UAG2000008551UGG2000008551U2000008551UAUCAC2000002551G2000009551UUCGCCU2000000000NACACGCGAAAG2000007551G2000008551U2000005551C2000005551CCCGGU2000009551UCG2000001551AAACCGGGCGGAAACACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GUUUCCGUAGUGPAGD--GGDD-AUCACLPUCGCCU.ACACGCGAAAG7D?-------------------?CCGGUPCGѢAACCGGGCGGAAACACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	13	16	20	20A	26	27	34	45A	45B	45C	49	55	58
Position in the sequence	13	16	19	20	26	27	34	46	47	48	49	55	58
Modification positions	Y	D	D	D	m2G	Y	N	m7G	D	m5C	m5C	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS