General Data

RNA Type	tRNA
SOTerm	SO:0000258
Original Source	tdbR00000621
Secondary Structure	.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGGUCCAUAGCUCAGD#GDAGAGCAPPUGABUGCAKAPCAAGAG7DCACCGGUPCGѢACCCGGUUGGGCCCUCCA
Sequence (SHORT NAMES ENCODING)	GGGUCCAUAGCUCAGpDpGmGpDAGAGCApYpYUGApCmUGCApm1GApYCAAGAGpm7GpDCACCGGUpYCGpm1AACCCGGUUGGGCCCUCCA
Sequence (MODOMICS CODE ENCODING)	GGGUCCAUAGCUCAG2000008551U2000090551GG2000008551UAGAGCA2000009551U2000009551UUGA2000090551CUGCA2000001551GA2000009551UCAAGAG2000007551G2000008551UCACCGGU2000009551UCG2000001551AACCCGGUUGGGCCCUCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGGUCCAUAGCUCAGD--#GD--AGAGCAPPUGABUGCAKAPCAAGAG7DC-------------------ACCGGUPCGѢACCCGGUUGGGCCCUCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Alignment	16	18	20	27	28	32	37	39	45A	45B	55	58
Position in the Sequence	16	17	19	26	27	31	36	38	45	46	54	57
Modification Positions	D	Gm	D	Y	Y	Cm	m1G	Y	m7G	D	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS