RNA Type | tRNA |
---|---|
SOTerm | SO:0000258 |
Original Source | tdbR00000170 |
Secondary Structure | (((((((..((((.....[...)))).(((((.......))))).....(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GGUCUCUUKLCCCAGDDGGDDAAGGCACCGUGCUIAU6ACGCGGGGAD?AGCGGTPCGѢUCCCGCUAGAGACCACCA |
Sequence (SHORT NAMES ENCODING) | GGUCUCUUpm1Gpm2GCCCAGpDpDGGpDpDAAGGCACCGUGCUpIAUpt6AACGCGGGGApDpm5CAGCGGpm5UpYCGpm1AUCCCGCUAGAGACCACCA |
Sequence (MODOMICS CODE ENCODING) | GGUCUCUU2000001551G2000002551GCCCAG2000008551U2000008551UGG2000008551U2000008551UAAGGCACCGUGCU2000009551AAU2000062551AACGCGGGGA2000008551U2000005551CAGCGG2000005551U2000009551UCG2000001551AUCCCGCUAGAGACCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GGUCUCUUKLCCCAGDD-GGDD-AAGGCACCGUGCUIAU6ACGCGGGGAD?-------------------AGCGGTPCGѢUCCCGCUAGAGACCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 9 | 10 | 16 | 17 | 20 | 20A | 34 | 37 | 45B | 45C | 54 | 55 | 58 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 9 | 10 | 16 | 17 | 20 | 21 | 35 | 38 | 48 | 49 | 55 | 56 | 59 |
Modification positions | m1G | m2G | D | D | D | D | I | t6A | D | m5C | m5U | Y | m1A |
Level of Experimental Evidence | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Level of Experimental Reliability | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |