RNA Type | tRNA |
---|---|
SOTerm | SO:0000272 |
Original Source | tdbR00000549 |
Secondary Structure | (((((((..(((.....[....))).(((((.......))))).((....))...(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GAGAUGGUGLCUGAGUGGDDAAAGCRGPAGACUQUAHAPCPAUJGGGUAUCCGUCGUCGGTPCGAGUCCGAUCCAUCUCACCA |
Sequence (SHORT NAMES ENCODING) | GAGAUGGUGpm2GCUGAGUGGpDpDAAAGCpm2,2GGpYAGACUpQUAxAApYCpYAUpUmGGGUAUCCGUCGUCGGpm5UpYCGAGUCCGAUCCAUCUCACCA |
Sequence (MODOMICS CODE ENCODING) | GAGAUGGUG2000002551GCUGAGUGG2000008551U2000008551UAAAGC2000022551GG2000009551UAGACU2000042551GUA2000000999AA2000009551UC2000009551UAU2000090551UGGGUAUCCGUCGUCGG2000005551U2000009551UCGAGUCCGAUCCAUCUCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GAGAUGGUGLCUGAGU--GGD-DAAAGCRGPAGACUQUAHAPCPAUJGGGUAUCCGUC------------GUCGGTPCGAGUCCGAUCCAUCUCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 10 | 20 | 20B | 26 | 28 | 34 | 37 | 39 | 41 | 44 | 54 | 55 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 10 | 19 | 20 | 26 | 28 | 34 | 37 | 39 | 41 | 44 | 61 | 62 |
Modification positions | m2G | D | D | m2,2G | Y | Q | xA | Y | Y | Um | m5U | Y |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |
Position in the alignment | 10 | 20 | 20B | 26 | 28 | 34 | 37 | 39 | 41 | 44 | 54 | 55 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 10 | 19 | 20 | 26 | 28 | 34 | 37 | 39 | 41 | 44 | 61 | 62 |
Source: 9336446 | m2G | D | D | m2,2G | Y | Q | i6A | Y | Um | m5U | Y | |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 5 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 5 | 3 | 3 | 3 |
Source: 3939713 | m2G | D | D | m2,2G | Y | Q | xA | Y | Y | Um | m5U | Y |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |