Modomics - A Database of RNA Modifications

ID Card:

Full name: tRNA-2′-O-methyltransferase TRM13
GI: 6324447
Orf: YOL125w
COG: COG2230
UniProt: Q12383
Alpha Fold Predicted Structure: AF-Q12383-F1
Enzyme type: methyltransferase
Position of modification - modification: t:4 - Am
t:4 - Cm



Protein sequence:

MLQDNNGPAVKRAKPSERLQCEYFMEKKKRRCGMTRSSQNLYCSEHLNLMKKAANSQVHNKNGSEAEKERERVPCPLDPNHTVWADQLKKHLKKCNKTKLSHLNDDKPYYEPGYNGENGLLSSSVKIDITAEHLVQSIELLYKVFEGESMDELPLRQLNNKLMSLKRFPQLPSNTKHAVQQSSLIENLVDAGAFERPESLNFIEFGCGRAEFSRYVSLYLLTQLTSLPAEHSGSNSNEFVLIDRATNRMKFDKKIKDDFSEIKSNSPSKPISCPSIKRIKIDIRDLKMDPILKSTPGDDIQYVCISKHLCGVATDLTLRCIGNSSILHGDDNNGCNPKLKAICIAMCCRHVCDYGDYVNRSYVTSLVEKYRAHGSILTYETFFRVLTKLCSWGTCGRKPGTAITDIVNVVESFEGAEPYTITIKERENIGLMARRVIDEGRLVYVKEKFTEFNAELIRYVESDVSLENVAMLVYKK

Comments:

The enzyme and the modification position is conserved in eukaryotes.





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M L Q D N N G P A V K R A K P S E R L Q C E Y F M E K K K R R C G M T R S S Q N L Y C S E H L N L M K K A A N S Q V H N K N G S E A E K E R E R V P C P L D P N H T V W A D Q L K K H L K K C N K T K L S H L N D D K P Y Y E P G Y N G E N G L L S S S V K I D I T A E H L V Q S I E L L Y K V F E G E S M D E L P L R Q L N N K L M S L K R F P Q L P S N T K H A V Q Q S S L I E N L V D A G A F E R P E S L N F I E F G C G R A E F S R Y V S L Y L L T Q L T S L P A E H S G S N S N E F V L I D R A T N R M K F D K K I K D D F S E I K S N S P S K P I S C P S I K R I K I D I R D L K M D P I L K S T P G D D I Q Y V C I S K H L C G V A T D L T L R C I G N S S I L H G D D N N G C N P K L K A I C I A M C C R H V C D Y G D Y V N R S Y V T S L V E K Y R A H G S I L T Y E T F F R V L T K L C S W G T C G R K P G T A I T D I V N V V E S F E G A E P Y T I T I K E R E N I G L M A R R V I D E G R L V Y V K E K F T E F N A E L I R Y V E S D V S L E N V A M L V Y K K
50100150200250300350400450SequenceGHTBSN

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q12383-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q12383-F1.cif  
DSSP Secondary Structures   Q12383.dssp  





Publications:

Links:

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