RNA Type | tRNA |
---|---|
SOTerm | SO:0000267 |
Original Source | tdbR00000083 |
Secondary Structure | (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GCGGAUUUALCUCAGDDGGGAGAGCRCCAGABU#AAYAP?UGGAG7UC?UGUGTPCGѢUCCACAGAAUUCGCACCA |
Sequence (SHORT NAMES ENCODING) | GCGGAUUUApm2GCUCAGpDpDGGGAGAGCpm2,2GCCAGApCmUpGmAApyWApYpm5CUGGAGpm7GUCpm5CUGUGpm5UpYCGpm1AUCCACAGAAUUCGCACCA |
Sequence (MODOMICS CODE ENCODING) | GCGGAUUUA2000002551GCUCAG2000008551U2000008551UGGGAGAGC2000022551GCCAGA2000090551CU2000090551GAA2003483551GA2000009551U2000005551CUGGAG2000007551GUC2000005551CUGUG2000005551U2000009551UCG2000001551AUCCACAGAAUUCGCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GCGGAUUUALCUCAGDD-GGG--AGAGCRCCAGABU#AAYAP?UGGAG7UC-------------------?UGUGTPCGѢUCCACAGAAUUCGCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 10 | 16 | 17 | 26 | 32 | 34 | 37 | 39 | 40 | 45A | 49 | 54 | 55 | 58 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 10 | 16 | 17 | 26 | 32 | 34 | 37 | 39 | 40 | 46 | 49 | 54 | 55 | 58 |
Modification positions | m2G | D | D | m2,2G | Cm | Gm | yW | Y | m5C | m7G | m5C | m5U | Y | m1A |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |
Position in the alignment | 10 | 16 | 17 | 26 | 32 | 34 | 37 | 39 | 40 | 45A | 49 | 54 | 55 | 58 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 10 | 16 | 17 | 26 | 32 | 34 | 37 | 39 | 40 | 46 | 49 | 54 | 55 | 58 |
Source: 6377234 | m2G | D | D | m2,2G | Cm | Gm | yW | Y | m5C | m7G | m5C | m5U | Y | m1A |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Source: 5637712 | m2G | D | D | m2,2G | Cm | Gm | yW | Y | m5C | m7G | m5C | m5U | Y | m1A |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |