RNA Type | tRNA |
---|---|
SOTerm | SO:0000267 |
Original Source | tdbR00000097 |
Secondary Structure | (((((((..((((.....[..)))).(((((.......))))).....(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GCCGAAAUALCUCѢGDDGGGAGAGCRPPAGABU#AAWAPCUAAAG7DC?CUGGTPCAѢUCCCGGGUUUCGGCACCA |
Sequence (SHORT NAMES ENCODING) | GCCGAAAUApm2GCUCpm1AGpDpDGGGAGAGCpm2,2GpYpYAGApCmUpGmAApo2yWApYCUAAAGpm7GpDCpm5CCUGGpm5UpYCApm1AUCCCGGGUUUCGGCACCA |
Sequence (MODOMICS CODE ENCODING) | GCCGAAAUA2000002551GCUC2000001551AG2000008551U2000008551UGGGAGAGC2000022551G2000009551U2000009551UAGA2000090551CU2000090551GAA2034832551GA2000009551UCUAAAG2000007551G2000008551UC2000005551CCUGG2000005551U2000009551UCA2000001551AUCCCGGGUUUCGGCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GCCGAAAUALCUCѢGDD-GGG--AGAGCRPPAGABU#AAWAPCUAAAG7DC-------------------?CUGGTPCAѢUCCCGGGUUUCGGCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 10 | 14 | 16 | 17 | 26 | 27 | 28 | 32 | 34 | 37 | 39 | 45A | 45B | 49 | 54 | 55 | 58 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 10 | 14 | 16 | 17 | 26 | 27 | 28 | 32 | 34 | 37 | 39 | 46 | 47 | 49 | 54 | 55 | 58 |
Modification positions | m2G | m1A | D | D | m2,2G | Y | Y | Cm | Gm | o2yW | Y | m7G | D | m5C | m5U | Y | m1A |
Level of Experimental Evidence | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Level of Experimental Reliability | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |