General Data

RNA Type	tRNA
SOTerm	SO:0000267
Original Source	tdbR00000099
Secondary Structure	.(((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	AGCCGAAAUALCUCѢGDDGGGAGAGCRPPAGABU#AAKAPCUAAAG7UC?CUGGTPCGѢUCCCGGGUUUCGGCACCA
Sequence (SHORT NAMES ENCODING)	AGCCGAAAUApm2GCUCpm1AGpDpDGGGAGAGCpm2,2GpYpYAGApCmUpGmAApm1GApYCUAAAGpm7GUCpm5CCUGGpm5UpYCGpm1AUCCCGGGUUUCGGCACCA
Sequence (MODOMICS CODE ENCODING)	AGCCGAAAUA2000002551GCUC2000001551AG2000008551U2000008551UGGGAGAGC2000022551G2000009551U2000009551UAGA2000090551CU2000090551GAA2000001551GA2000009551UCUAAAG2000007551GUC2000005551CCUGG2000005551U2000009551UCG2000001551AUCCCGGGUUUCGGCACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	AGCCGAAAUALCUCѢGDD-GGG--AGAGCRPPAGABU#AAKAPCUAAAG7UC-------------------?CUGGTPCGѢUCCCGGGUUUCGGCACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	10	14	16	17	26	27	28	32	34	37	39	45A	49	54	55	58
Position in the sequence	11	15	17	18	27	28	29	33	35	38	40	47	50	55	56	59
Modification positions	m2G	m1A	D	D	m2,2G	Y	Y	Cm	Gm	m1G	Y	m7G	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS