General Data

RNA Type	tRNA
SOTerm	SO:0000268
Original Source	tdbR00000319
Secondary Structure	(((((((..((((......[..)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	CGGCGAG4AGCGCAGCUUGGDAGCGCAACUGGJUVGGKACCAGUGG7UCGGAGGTPCGAAUCCUCPCUCGCCGACCA
Sequence (SHORT NAMES ENCODING)	CGGCGAGps4UAGCGCAGCUUGGpDAGCGCAACUGGpUmUpcmo5UGGpm1GACCAGUGGpm7GUCGGAGGpm5UpYCGAAUCCUCpYCUCGCCGACCA
Sequence (MODOMICS CODE ENCODING)	CGGCGAG2000074551UAGCGCAGCUUGG2000008551UAGCGCAACUGG2000090551UU2000502551UGG2000001551GACCAGUGG2000007551GUCGGAGG2000005551U2000009551UCGAAUCCUC2000009551UCUCGCCGACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-CGGCGAG4AGCGCAGCUUGGD--AGCGCAACUGGJUVGGKACCAGUGG7UC-------------------GGAGGTPCGAAUCCUCPCUCGCCGACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	8	20	32	34	37	45A	54	55	65
Position in the sequence	8	21	33	35	38	47	55	56	66
Modification positions	s4U	D	Um	cmo5U	m1G	m7G	m5U	Y	Y
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS