General Data

RNA Type	tRNA
SOTerm	SO:0000272
Original Source	tdbR00000564
Secondary Structure	(((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	CCUUCGAUALCUCAGDDGGXAGAGCRGPGGACUQPAKAJCCAUAG7DCGCUGGTPCAѢAUCCGGCUCGAAGGACCA
Sequence (SHORT NAMES ENCODING)	CCUUCGAUApm2GCUCAGpDpDGGpacp3UAGAGCpm2,2GGpYGGACUpQpYApm1GApUmCCAUAGpm7GpDCGCUGGpm5UpYCApm1AAUCCGGCUCGAAGGACCA
Sequence (MODOMICS CODE ENCODING)	CCUUCGAUA2000002551GCUCAG2000008551U2000008551UGG2000030551UAGAGC2000022551GG2000009551UGGACU2000042551G2000009551UA2000001551GA2000090551UCCAUAG2000007551G2000008551UCGCUGG2000005551U2000009551UCA2000001551AAUCCGGCUCGAAGGACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-CCUUCGAUALCUCAGDD-GGX--AGAGCRGPGGACUQPAKAJCCAUAG7DC-------------------GCUGGTPCAѢAUCCGGCUCGAAGGACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	10	16	17	20	26	28	34	35	37	39	45A	45B	54	55	58
Position in the sequence	10	16	17	20	26	28	34	35	37	39	46	47	54	55	58
Modification positions	m2G	D	D	acp3U	m2,2G	Y	Q	Y	m1G	Um	m7G	D	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS