RNA Type | tRNA |
---|---|
SOTerm | SO:0000272 |
Original Source | None |
Secondary Structure | |
Sequence (UNICHARACTER ENCODING) | CCUUCLAUALCUCAGCDGGXAGAGCRRAGGACU9PAKA]CCUUAG7D?GCUGGTPCGѢUUCCGGCUCGAAGGACCA |
Sequence (SHORT NAMES ENCODING) | CCUUCpm2GAUApm2GCUCAGCpDGGpacp3UAGAGCpm2,2Gpm2,2GAGGACUpgalQpYApm1GApm1YCCUUAGpm7GpDpm5CGCUGGpm5UpYCGpm1AUUCCGGCUCGAAGGACCA |
Sequence (MODOMICS CODE ENCODING) | CCUUC2000002551GAUA2000002551GCUCAGC2000008551UGG2000030551UAGAGC2000022551G2000022551GAGGACU2000104551G2000009551UA2000001551GA2000019551UCCUUAG2000007551G2000008551U2000005551CGCUGG2000005551U2000009551UCG2000001551AUUCCGGCUCGAAGGACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -CCUUCLAUALCUCAGCD-GGX--AGAGCRRAGGACU9PAKA]CCUUAG7D?-------------------GCUGGTPCGѢUUCCGGCUCGAAGGACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 6 | 10 | 17 | 20 | 26 | 27 | 34 | 35 | 37 | 39 | 45A | 45B | 45C | 54 | 55 | 58 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 6 | 10 | 17 | 20 | 26 | 27 | 34 | 35 | 37 | 39 | 46 | 47 | 48 | 54 | 55 | 58 |
Modification positions | m2G | m2G | D | acp3U | m2,2G | m2,2G | galQ | Y | m1G | m1Y | m7G | D | m5C | m5U | Y | m1A |
Level of Experimental Evidence | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Level of Experimental Reliability | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |