General Data

RNA Type	tRNA
SOTerm	SO:0000259
Original Source	tdbR00000604
Secondary Structure	(((((((..((((....[...))))((((((.......))))))....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	..CGUCUUAL...AGDGG..A...CR.C.UGBUUUAEACACG.UG7D?GUGGGTPCGѢAUCCCACAGACGAGACCA
Sequence (SHORT NAMES ENCODING)	NNCGUCUUApm2GNNNAGpDGGNNANNNCpm2,2GNCNUGpCmUUUApm6t6AACACGNUGpm7GpDpm5CGUGGGpm5UpYCGpm1AAUCCCACAGACGAGACCA
Sequence (MODOMICS CODE ENCODING)	2000000000N2000000000NCGUCUUA2000002551G2000000000N2000000000N2000000000NAG2000008551UGG2000000000N2000000000NA2000000000N2000000000N2000000000NC2000022551G2000000000NC2000000000NUG2000090551CUUUA2000662551AACACG2000000000NUG2000007551G2000008551U2000005551CGUGGG2000005551U2000009551UCG2000001551AAUCCCACAGACGAGACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-..CGUCUUAL...AGD--GG..-A...CR.C.UGBUUUAEACACG.UG7D?-------------------GUGGGTPCGѢAUCCCACAGACGAGACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	1	2	10	11	12	13	16	20	20A	22	23	24	26	27	29	32	37	43	45A	45B	45C	54	55	58
Position in the sequence	1	2	10	11	12	13	16	19	20	22	23	24	26	27	29	32	37	43	46	47	48	54	55	58
Modification positions	N	N	m2G	N	N	N	D	N	N	N	N	N	m2,2G	N	N	Cm	m6t6A	N	m7G	D	m5C	m5U	Y	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS