RNA Type | tRNA |
---|---|
SOTerm | SO:0000258 |
Original Source | tdbR00000161 |
Secondary Structure | (((((((..((((....[..)))).(((((.......))))).....(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | GGGCUAUUAGCUCAGU#GDAGAGCRCGCCCCUGAU6AGGGCGAG7XCUCUGGTPCAAGUCCAGGAUGGCCCACCA |
Sequence (SHORT NAMES ENCODING) | GGGCUAUUAGCUCAGUpGmGpDAGAGCpm2,2GCGCCCCUGAUpt6AAGGGCGAGpm7Gpacp3UCUCUGGpm5UpYCAAGUCCAGGAUGGCCCACCA |
Sequence (MODOMICS CODE ENCODING) | GGGCUAUUAGCUCAGU2000090551GG2000008551UAGAGC2000022551GCGCCCCUGAU2000062551AAGGGCGAG2000007551G2000030551UCUCUGG2000005551U2000009551UCAAGUCCAGGAUGGCCCACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -GGGCUAUUAGCUCAGU--#GD--AGAGCRCGCCCCUGAU6AGGGCGAG7XC-------------------UCUGGTPCAAGUCCAGGAUGGCCCACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 18 | 20 | 26 | 37 | 45A | 45B | 54 | 55 |
---|---|---|---|---|---|---|---|---|
Position in the sequence | 17 | 19 | 25 | 36 | 45 | 46 | 53 | 54 |
Modification positions | Gm | D | m2,2G | t6A | m7G | acp3U | m5U | Y |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |
Position in the alignment | 18 | 20 | 26 | 37 | 45A | 45B | 54 | 55 |
---|---|---|---|---|---|---|---|---|
Position in the sequence | 17 | 19 | 25 | 36 | 45 | 46 | 53 | 54 |
Source: M37133.1 | Gm | D | m2,2G | t6A | m7G | acp3U | m5U | Y |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Source: K00223.1 | Gm | D | m2,2G | t6A | m7G | Y | ||
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 5 | 5 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 5 | 5 | 3 |