General Data

RNA Type	tRNA
SOTerm	SO:0000257
Original Source	tdbR00000026
Secondary Structure	(((((((..((((.....[...)))).(((((.......))))).....(((((..]....))))))))))))....
Sequence (UNICHARACTER ENCODING)	GGAGCGG4AGUUCAGDCGGDDAGAAUACCUGCCU⊄UCɿCGCAGGGG7UCGCGGGTPCGAGUCCCGPCCGUUCCGCCA
Sequence (SHORT NAMES ENCODING)	GGAGCGGps4UAGUUCAGpDCGGpDpDAGAAUACCUGCCUpgluQUCpm2ACGCAGGGGpm7GUCGCGGGpm5UpYCGAGUCCCGpYCCGUUCCGCCA
Sequence (MODOMICS CODE ENCODING)	GGAGCGG2000074551UAGUUCAG2000008551UCGG2000008551U2000008551UAGAAUACCUGCCU2000105551GUC2000002551ACGCAGGGG2000007551GUCGCGGG2000005551U2000009551UCGAGUCCCG2000009551UCCGUUCCGCCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GGAGCGG4AGUUCAGDC-GGDD-AGAAUACCUGCCU⊄UCɿCGCAGGGG7UC-------------------GCGGGTPCGAGUCCCGPCCGUUCCGCCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	8	16	20	20A	34	37	45A	54	55	65
Position in the sequence	8	16	20	21	35	38	47	55	56	66
Modification positions	s4U	D	D	D	gluQ	m2A	m7G	m5U	Y	Y
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS