RNA Type | tRNA |
---|---|
Original Source | tdbR00000514 |
Secondary Structure | (((((((..((((......[..)))).(((((.......))))).....(((((..]....)))))))))))).... |
Sequence (UNICHARACTER ENCODING) | CGCAGGAUAGAGCAGUCU#GDAGCUCRPGGGGCUCAUAAPCCCAAU7DCGCAGGTPCAAAUCCUGCUCCUGCAACCA |
Sequence (SHORT NAMES ENCODING) | CGCAGGAUAGAGCAGUCUpGmGpDAGCUCpm2,2GpYGGGGCUCAUAApYCCCAAUpm7GpDCGCAGGpm5UpYCAAAUCCUGCUCCUGCAACCA |
Sequence (MODOMICS CODE ENCODING) | CGCAGGAUAGAGCAGUCU2000090551GG2000008551UAGCUC2000022551G2000009551UGGGGCUCAUAA2000009551UCCCAAU2000007551G2000008551UCGCAGG2000005551U2000009551UCAAAUCCUGCUCCUGCAACCA |
Consensus Secondary Structure | .(((((((..((((......[....)))).(((((.......)))))........................(((((..]....)))))))))))).... |
Alignment with Modification | -CGCAGGAUAGAGCAGUCU#GD--AGCUCRPGGGGCUCAUAAPCCCAAU7DC-------------------GCAGGTPCAAAUCCUGCUCCUGCAACCA |
Method Classification | Score |
---|---|
Multiple direct experimental evidence | 1 |
Direct experimental evidence | 2 |
Inferred based on indirect experimental evidence | 3 |
Predicted computationally | 4 |
Evidence not yet annotated (Unknown) | 5 |
Irrelevant | 6 |
Position in the alignment | 18 | 20 | 26 | 27 | 39 | 45A | 45B | 54 | 55 |
---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 19 | 21 | 27 | 28 | 40 | 47 | 48 | 55 | 56 |
Modification positions | Gm | D | m2,2G | Y | Y | m7G | D | m5U | Y |
Source | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS | MODOMICS |
Position in the alignment | 18 | 20 | 26 | 27 | 39 | 45A | 45B | 54 | 55 |
---|---|---|---|---|---|---|---|---|---|
Position in the sequence | 19 | 21 | 27 | 28 | 40 | 47 | 48 | 55 | 56 |
Source: 7443533 | Gm | D | m2,2G | Y | Y | m7G | D | m5U | Y |
Level of Experimental Reliability | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |
Level of Experimental Evidence | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 |