Modomics - A Database of RNA Modifications

ID Card:

Full name: YTH N6-methyladenosine RNA binding protein 2
Synonym: HGRG8,NY-REN-2,CAHL
GI: 41019527
UniProt: Q9Y5A9
Structures: | 4RDN | 4RDO | 4WQN | 7A1V | 7BIK | 7R5F | 7R5L | 7R5W | 7YWB | 7YX6 | 7YXE | 7Z26 | 7Z4U | 7Z54 | 7Z5M | 7Z7B | 7Z7F | 7Z8P | 7Z8W | 7Z8X | 7Z92 | 7Z93 | 7ZG4 |
Alpha Fold Predicted Structure: AF-Q9Y5A9-F1


PDB Structures:


4RDN

Structure Description:

Title: Structure of YTH-YTHDF2 in complex with m6A
Classification: RNA BINDING PROTEIN
Technique: X-Ray Diffraction
Resolution: 2.1
R value free: 0.27
R value observed: 0.22
R value work: 0.217

Abstract of the PDB Structure's related Publication:

LETTER TO THE EDITOR. NO ABSTRACT AVAILABLE

Download RCSB-PDB Structures:

Pdb Files   4RDN.pdb   4RDO.pdb   4WQN.pdb   7A1V.pdb   7BIK.pdb   7R5F.pdb   7R5L.pdb   7R5W.pdb   7YWB.pdb   7YX6.pdb   7YXE.pdb   7Z26.pdb   7Z4U.pdb   7Z54.pdb   7Z5M.pdb   7Z7B.pdb   7Z7F.pdb   7Z8P.pdb   7Z8W.pdb   7Z8X.pdb   7Z92.pdb   7Z93.pdb   7ZG4.pdb  
Pdbx/mmCIF Files   4RDN.cif   4RDO.cif   4WQN.cif   7A1V.cif   7BIK.cif   7R5F.cif   7R5L.cif   7R5W.cif   7YWB.cif   7YX6.cif   7YXE.cif   7Z26.cif   7Z4U.cif   7Z54.cif   7Z5M.cif   7Z7B.cif   7Z7F.cif   7Z8P.cif   7Z8W.cif   7Z8X.cif   7Z92.cif   7Z93.cif   7ZG4.cif  


Protein sequence:

MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK

Comments:

None





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M S A S S L L E Q R P K G Q G N K V Q N G S V H Q K D G L N D D D F E P Y L S P Q A R P N N A Y T A M S D S Y L P S Y Y S P S I G F S Y S L G E A A W S T G G D T A M P Y L T S Y G Q L S N G E P H F L P D A M F G Q P G A L G S T P F L G Q H G F N F F P S G I D F S A W G N N S S Q G Q S T Q S S G Y S S N Y A Y A P S S L G G A M I D G Q S A F A N E T L N K A P G M N T I D Q G M A A L K L G S T E V A S N V P K V V G S A V G S G S I T S N I V A S N S L P P A T I A P P K P A S W A D I A S K P A K Q Q P K L K T K N G I A G S S L P P P P I K H N M D I G T W D N K G P V A K A P S Q A L V Q N I G Q P T Q G S P Q P V G Q Q A N N S P P V A Q A S V G Q Q T Q P L P P P P P Q P A Q L S V Q Q Q A A Q P T R W V A P R N R G S G F G H N G V D G N G V G Q S Q A G S G S T P S E P H P V L E K L R S I N N Y N P K D F D W N L K H G R V F I I K S Y S E D D I H R S I K Y N I W C S T E H G N K R L D A A Y R S M N G K G P V Y L L F S V N G S G H F C G V A E M K S A V D Y N T C A G V W S Q D K W K G R F D V R W I F V K D V P N S Q L R H I R L E N N E N K P V T N S R D T Q E V P L E K A K Q V L K I I A S Y K H T T S I F D D F S H Y E K R Q E E E E S V K K E R Q G R G K
50100150200250300350400450500550SequenceGHTBSN

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9Y5A9-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9Y5A9-F1.cif  
DSSP Secondary Structures   Q9Y5A9.dssp  





Diseases connected to this enzyme:

Publications: