CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

All long RNAs from the RNAstrand dataset

	All RNAs from RNAstrand dataset were used to benchmark RNA secondary structure prediction methods. Input for comparative methods consisted of a sequence collection / an alignment containing the query sequence and all sequences from a given seed alignment for an Rfam family identified for the query.
Updated: Oct. 3, 2012
Base pair definition: extended
Type of RNA structures: all (including pseudoknotted)
RNA sequence length range: 801, 30000
Number of RNA sequences: 287
Robustness test: no

In the summary below ranks have been assigned only to methods, for which at least 40% of comparisons with other methods is valid (i.e. at least 40% (in case of this ranking: 21) of the comparisons were based on at least 10 predictions for common targets).

The ratio 40% / 60% was chosen in order not to bias methods for which not enough predictions have been collected.

Summary of pairwise comparisons

54 methods predicting RNA secondary structure were compared with each other (thus each method has 53 comparisons with other methods (sum of values from columns "Wins", "Losses", "=" and "?" in each row)).

Legend:

=	draw - it is assigned when both methods have generated >= 10 predictions for common targets if:
	1) the accuracies of their results are statistically not distinguishable (P-value greater than 0.001),
	or
	2) the numbers of base pairs classified to categories True Positivies (TP), True Negatives (TN), False Positivies (FP, including 3 subcategories) and False Negatives (FN) for both methods are the same.
?	two methods cannot be compared ("no winner") - not enough predictions for a given pair of methods (minimum is 10)
N/A	a method for which more than 32 (60%) of comparisons with other methods is invalid (see column "?").

Rank	Method Name	Trained	Wins	Losses	=	?	Predictions attempted	Predictions generated
1	PETfold_pre2.0(seed)	no	24	0	0	29	83	83
2	ContextFold	yes	22	1	2	28	287	287
3	CentroidAlifold(seed)	yes	21	2	0	30	83	64
4	PETfold_pre2.0(20)	no	21	2	1	29	77	77
5	CentroidAlifold(20)	yes	20	3	1	29	77	77
6	RNAalifold(seed)	no	19	5	0	29	83	68
7	RNAalifold(20)	no	18	6	0	29	77	77
8	MXScarna(seed)	no	16	7	0	30	83	64
9	MXScarna(20)	no	16	8	0	29	77	77
10	Carnac(20)	no	15	9	0	29	77	77
11	IPknot	yes	15	10	0	28	287	272
12	CentroidFold	yes	13	12	0	28	287	215
13	Contrafold	yes	12	13	0	28	287	273
14	RSpredict(seed)	no	11	12	0	30	83	57
15	RSpredict(20)	no	11	13	0	29	77	77
16	Sfold	no	10	15	0	28	287	273
17	MaxExpect	yes	9	16	0	28	287	273
18	ProbKnot	yes	8	17	0	28	287	273
19	UNAFold	no	7	18	0	28	287	287
20	CRWrnafold	yes	5	19	0	29	287	138
21	Afold	no	5	20	0	28	287	220
22	Fold	no	4	21	0	28	287	273
23	RNAfold	no	2	22	1	28	287	273
24	PknotsRG	no	1	22	1	29	287	168
N/A	McQFold	yes	0	0	0	53	287	7
N/A	RNASLOpt	no	0	0	0	53	287	1
N/A	MCFold	yes	0	0	0	53	287	0
N/A	Vsfold5	no	0	0	0	53	287	0
N/A	Vsfold4	no	0	0	0	53	287	0
N/A	CentroidHomfold‑LAST	yes	0	0	0	53	287	0
N/A	RDfolder	no	0	0	0	53	287	0
N/A	RNAshapes	no	0	0	0	53	287	0
N/A	NanoFolder	yes	0	0	0	53	287	0
N/A	RNAsubopt	no	0	0	0	53	287	0
N/A	HotKnots	no	0	0	0	53	287	0
N/A	Pknots	no	0	0	0	53	287	0
N/A	Alterna	no	0	0	0	53	287	0
N/A	Cylofold	no	0	0	0	53	287	0
N/A	Mastr(seed)	yes	0	0	0	53	83	3
N/A	Murlet(seed)	yes	0	0	0	53	83	1
N/A	Carnac(seed)	no	0	0	0	53	83	1
N/A	TurboFold(seed)	no	0	0	0	53	83	0
N/A	CMfinder(seed)	yes	0	0	0	53	83	0
N/A	PPfold(seed)	yes	0	0	0	53	83	0
N/A	RNASampler(seed)	no	0	0	0	53	83	0
N/A	Multilign(seed)	no	0	0	0	53	83	0
N/A	Murlet(20)	yes	0	0	0	53	77	9
N/A	PPfold(20)	yes	0	0	0	53	77	6
N/A	CMfinder(20)	yes	0	0	0	53	77	0
N/A	RNASampler(20)	no	0	0	0	53	77	0
N/A	Multilign(20)	no	0	0	0	53	77	0
N/A	TurboFold(20)	no	0	0	0	53	77	0
N/A	RNAwolf	yes	0	13	0	40	287	88
N/A	Mastr(20)	yes	0	19	0	34	77	27

Detailed results of pairwise comparisons between methods

Legend:

+	method on the left scored higher in this pairwise comparison
-	method on the left scored lower in this pairwise comparison
=	draw - it is assigned when both methods have generated >= 10 predictions for common targets if:
	1) the accuracies of their results are statistically not distinguishable (P-value greater than 0.001),
	or
	2) the numbers of base pairs classified to categories True Positivies (TP), True Negatives (TN), False Positivies (FP, including 3 subcategories) and False Negatives (FN) for both methods are the same.
?	two methods cannot be compared ("no winner") - not enough predictions for a given pair of methods (minimum is 10)

P-values were obtained using Wilcoxon signed-rank test taking 2 sets of 40 MCC values obtained for 40 random subsets of 90% of the dataset for each pair of methods. If the P-value is lower than 0.001 and there are at least 10 sequences on which benchmark was performed, the difference between the performance of two methods is assumed to be statistically sound.


PETfold_pre2.0(seed)		+ PETfold_pre2.0(seed) vs ContextFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 ContextFold: 0.728 Sensitivity PETfold_pre2.0(seed): 0.731 ContextFold: 0.690 Positive Predictive Value PETfold_pre2.0(seed): 0.793 ContextFold: 0.769 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.800 CentroidAlifold(seed): 0.796 Sensitivity PETfold_pre2.0(seed): 0.772 CentroidAlifold(seed): 0.706 Positive Predictive Value PETfold_pre2.0(seed): 0.830 CentroidAlifold(seed): 0.897 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 4.48494289621e-08	+ PETfold_pre2.0(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 PETfold_pre2.0(20): 0.728 Sensitivity PETfold_pre2.0(seed): 0.730 PETfold_pre2.0(20): 0.697 Positive Predictive Value PETfold_pre2.0(seed): 0.792 PETfold_pre2.0(20): 0.760 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 CentroidAlifold(20): 0.726 Sensitivity PETfold_pre2.0(seed): 0.730 CentroidAlifold(20): 0.614 Positive Predictive Value PETfold_pre2.0(seed): 0.792 CentroidAlifold(20): 0.860 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs RNAalifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.790 RNAalifold(seed): 0.744 Sensitivity PETfold_pre2.0(seed): 0.762 RNAalifold(seed): 0.678 Positive Predictive Value PETfold_pre2.0(seed): 0.820 RNAalifold(seed): 0.818 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs RNAalifold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 RNAalifold(20): 0.674 Sensitivity PETfold_pre2.0(seed): 0.730 RNAalifold(20): 0.621 Positive Predictive Value PETfold_pre2.0(seed): 0.792 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs MXScarna(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.800 MXScarna(seed): 0.659 Sensitivity PETfold_pre2.0(seed): 0.772 MXScarna(seed): 0.589 Positive Predictive Value PETfold_pre2.0(seed): 0.830 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs MXScarna(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 MXScarna(20): 0.598 Sensitivity PETfold_pre2.0(seed): 0.730 MXScarna(20): 0.548 Positive Predictive Value PETfold_pre2.0(seed): 0.792 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs Carnac(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 Carnac(20): 0.558 Sensitivity PETfold_pre2.0(seed): 0.730 Carnac(20): 0.348 Positive Predictive Value PETfold_pre2.0(seed): 0.792 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs IPknot Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 IPknot: 0.531 Sensitivity PETfold_pre2.0(seed): 0.731 IPknot: 0.464 Positive Predictive Value PETfold_pre2.0(seed): 0.793 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs CentroidFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.764 CentroidFold: 0.489 Sensitivity PETfold_pre2.0(seed): 0.734 CentroidFold: 0.425 Positive Predictive Value PETfold_pre2.0(seed): 0.795 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 82 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs Contrafold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Contrafold: 0.475 Sensitivity PETfold_pre2.0(seed): 0.731 Contrafold: 0.458 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs RSpredict(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.801 RSpredict(seed): 0.532 Sensitivity PETfold_pre2.0(seed): 0.773 RSpredict(seed): 0.447 Positive Predictive Value PETfold_pre2.0(seed): 0.831 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs RSpredict(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 RSpredict(20): 0.464 Sensitivity PETfold_pre2.0(seed): 0.730 RSpredict(20): 0.417 Positive Predictive Value PETfold_pre2.0(seed): 0.792 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs Sfold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Sfold: 0.449 Sensitivity PETfold_pre2.0(seed): 0.731 Sfold: 0.397 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Sfold: 0.508 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs MaxExpect Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 MaxExpect: 0.411 Sensitivity PETfold_pre2.0(seed): 0.731 MaxExpect: 0.402 Positive Predictive Value PETfold_pre2.0(seed): 0.793 MaxExpect: 0.420 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs ProbKnot Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 ProbKnot: 0.404 Sensitivity PETfold_pre2.0(seed): 0.731 ProbKnot: 0.399 Positive Predictive Value PETfold_pre2.0(seed): 0.793 ProbKnot: 0.409 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs UNAFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 UNAFold: 0.413 Sensitivity PETfold_pre2.0(seed): 0.731 UNAFold: 0.411 Positive Predictive Value PETfold_pre2.0(seed): 0.793 UNAFold: 0.416 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs CRWrnafold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.836 CRWrnafold: 0.515 Sensitivity PETfold_pre2.0(seed): 0.819 CRWrnafold: 0.508 Positive Predictive Value PETfold_pre2.0(seed): 0.854 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.1503931209e-08	+ PETfold_pre2.0(seed) vs Afold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.762 Afold: 0.408 Sensitivity PETfold_pre2.0(seed): 0.732 Afold: 0.406 Positive Predictive Value PETfold_pre2.0(seed): 0.794 Afold: 0.409 Number of pairs reference - predicted secondary structure: 79 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs Fold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Fold: 0.383 Sensitivity PETfold_pre2.0(seed): 0.731 Fold: 0.388 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Fold: 0.379 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs RNAfold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 RNAfold: 0.391 Sensitivity PETfold_pre2.0(seed): 0.731 RNAfold: 0.392 Positive Predictive Value PETfold_pre2.0(seed): 0.793 RNAfold: 0.389 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(seed) vs PknotsRG Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.832 PknotsRG: 0.435 Sensitivity PETfold_pre2.0(seed): 0.809 PknotsRG: 0.430 Positive Predictive Value PETfold_pre2.0(seed): 0.855 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	? PETfold_pre2.0(seed) vs Murlet(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.868 Murlet(seed): 0.642 Sensitivity PETfold_pre2.0(seed): 0.846 Murlet(seed): 0.606 Positive Predictive Value PETfold_pre2.0(seed): 0.891 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? McQFold vs PETfold_pre2.0(seed) Matthews Correlation Coefficient McQFold: N/A PETfold_pre2.0(seed): N/A Sensitivity McQFold: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value McQFold: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs PETfold_pre2.0(seed) Matthews Correlation Coefficient NanoFolder: N/A PETfold_pre2.0(seed): N/A Sensitivity NanoFolder: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value NanoFolder: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs PETfold_pre2.0(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs RNAshapes Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAshapes: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAshapes: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Multilign(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity Multilign(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Multilign(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs Multilign(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A Multilign(20): N/A Sensitivity PETfold_pre2.0(seed): N/A Multilign(20): N/A Positive Predictive Value PETfold_pre2.0(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient TurboFold(20): N/A PETfold_pre2.0(seed): N/A Sensitivity TurboFold(20): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value TurboFold(20): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs Mastr(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.623 Mastr(seed): 0.000 Sensitivity PETfold_pre2.0(seed): 0.574 Mastr(seed): 0.000 Positive Predictive Value PETfold_pre2.0(seed): 0.677 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? PETfold_pre2.0(seed) vs RNAsubopt Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAsubopt: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAsubopt: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs PETfold_pre2.0(seed) Matthews Correlation Coefficient HotKnots: N/A PETfold_pre2.0(seed): N/A Sensitivity HotKnots: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value HotKnots: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Pknots: N/A PETfold_pre2.0(seed): N/A Sensitivity Pknots: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Pknots: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Cylofold: N/A PETfold_pre2.0(seed): N/A Sensitivity Cylofold: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Cylofold: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs MCFold Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A MCFold: N/A Sensitivity PETfold_pre2.0(seed): N/A MCFold: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Vsfold5: N/A PETfold_pre2.0(seed): N/A Sensitivity Vsfold5: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Vsfold5: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Vsfold4: N/A PETfold_pre2.0(seed): N/A Sensitivity Vsfold4: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Vsfold4: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs Carnac(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.894 Carnac(seed): 0.729 Sensitivity PETfold_pre2.0(seed): 0.884 Carnac(seed): 0.570 Positive Predictive Value PETfold_pre2.0(seed): 0.904 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RNASampler(20): N/A PETfold_pre2.0(seed): N/A Sensitivity RNASampler(20): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RNASampler(20): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs CMfinder(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A CMfinder(20): N/A Sensitivity PETfold_pre2.0(seed): N/A CMfinder(20): N/A Positive Predictive Value PETfold_pre2.0(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient PPfold(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity PPfold(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value PPfold(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RDfolder: N/A PETfold_pre2.0(seed): N/A Sensitivity RDfolder: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RDfolder: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs RNASLOpt Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNASLOpt: N/A Sensitivity PETfold_pre2.0(seed): N/A RNASLOpt: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs Murlet(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.765 Murlet(20): 0.621 Sensitivity PETfold_pre2.0(seed): 0.733 Murlet(20): 0.544 Positive Predictive Value PETfold_pre2.0(seed): 0.799 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Alterna: N/A PETfold_pre2.0(seed): N/A Sensitivity Alterna: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Alterna: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(seed) vs PPfold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.775 PPfold(20): 0.746 Sensitivity PETfold_pre2.0(seed): 0.743 PPfold(20): 0.681 Positive Predictive Value PETfold_pre2.0(seed): 0.808 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? PETfold_pre2.0(seed) vs RNAwolf Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAwolf: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAwolf: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ PETfold_pre2.0(seed) vs Mastr(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.644 Mastr(20): 0.000 Sensitivity PETfold_pre2.0(seed): 0.610 Mastr(20): 0.000 Positive Predictive Value PETfold_pre2.0(seed): 0.680 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08
ContextFold	83 PETfold_pre2.0(seed) vs ContextFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 ContextFold: 0.728 Sensitivity PETfold_pre2.0(seed): 0.731 ContextFold: 0.690 Positive Predictive Value PETfold_pre2.0(seed): 0.793 ContextFold: 0.769 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ ContextFold vs CentroidAlifold(seed) Matthews Correlation Coefficient ContextFold: 0.821 CentroidAlifold(seed): 0.796 Sensitivity ContextFold: 0.778 CentroidAlifold(seed): 0.706 Positive Predictive Value ContextFold: 0.868 CentroidAlifold(seed): 0.897 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	= PETfold_pre2.0(20) vs ContextFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 ContextFold: 0.725 Sensitivity PETfold_pre2.0(20): 0.697 ContextFold: 0.688 Positive Predictive Value PETfold_pre2.0(20): 0.760 ContextFold: 0.765 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 0.00353686086758	= CentroidAlifold(20) vs ContextFold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 ContextFold: 0.725 Sensitivity CentroidAlifold(20): 0.614 ContextFold: 0.688 Positive Predictive Value CentroidAlifold(20): 0.860 ContextFold: 0.765 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 0.0452037747897	+ ContextFold vs RNAalifold(seed) Matthews Correlation Coefficient ContextFold: 0.799 RNAalifold(seed): 0.744 Sensitivity ContextFold: 0.757 RNAalifold(seed): 0.678 Positive Predictive Value ContextFold: 0.843 RNAalifold(seed): 0.818 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs RNAalifold(20) Matthews Correlation Coefficient ContextFold: 0.725 RNAalifold(20): 0.674 Sensitivity ContextFold: 0.688 RNAalifold(20): 0.621 Positive Predictive Value ContextFold: 0.765 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs MXScarna(seed) Matthews Correlation Coefficient ContextFold: 0.821 MXScarna(seed): 0.659 Sensitivity ContextFold: 0.778 MXScarna(seed): 0.589 Positive Predictive Value ContextFold: 0.868 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs MXScarna(20) Matthews Correlation Coefficient ContextFold: 0.725 MXScarna(20): 0.598 Sensitivity ContextFold: 0.688 MXScarna(20): 0.548 Positive Predictive Value ContextFold: 0.765 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Carnac(20) Matthews Correlation Coefficient ContextFold: 0.725 Carnac(20): 0.558 Sensitivity ContextFold: 0.688 Carnac(20): 0.348 Positive Predictive Value ContextFold: 0.765 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs IPknot Matthews Correlation Coefficient ContextFold: 0.647 IPknot: 0.501 Sensitivity ContextFold: 0.607 IPknot: 0.431 Positive Predictive Value ContextFold: 0.689 IPknot: 0.583 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs CentroidFold Matthews Correlation Coefficient ContextFold: 0.673 CentroidFold: 0.445 Sensitivity ContextFold: 0.634 CentroidFold: 0.378 Positive Predictive Value ContextFold: 0.716 CentroidFold: 0.525 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Contrafold Matthews Correlation Coefficient ContextFold: 0.644 Contrafold: 0.466 Sensitivity ContextFold: 0.605 Contrafold: 0.447 Positive Predictive Value ContextFold: 0.686 Contrafold: 0.487 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs RSpredict(seed) Matthews Correlation Coefficient ContextFold: 0.818 RSpredict(seed): 0.532 Sensitivity ContextFold: 0.775 RSpredict(seed): 0.447 Positive Predictive Value ContextFold: 0.864 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs RSpredict(20) Matthews Correlation Coefficient ContextFold: 0.725 RSpredict(20): 0.464 Sensitivity ContextFold: 0.688 RSpredict(20): 0.417 Positive Predictive Value ContextFold: 0.765 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Sfold Matthews Correlation Coefficient ContextFold: 0.644 Sfold: 0.414 Sensitivity ContextFold: 0.605 Sfold: 0.366 Positive Predictive Value ContextFold: 0.686 Sfold: 0.469 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs MaxExpect Matthews Correlation Coefficient ContextFold: 0.644 MaxExpect: 0.407 Sensitivity ContextFold: 0.605 MaxExpect: 0.396 Positive Predictive Value ContextFold: 0.686 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs ProbKnot Matthews Correlation Coefficient ContextFold: 0.644 ProbKnot: 0.400 Sensitivity ContextFold: 0.605 ProbKnot: 0.396 Positive Predictive Value ContextFold: 0.686 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs UNAFold Matthews Correlation Coefficient ContextFold: 0.638 UNAFold: 0.383 Sensitivity ContextFold: 0.601 UNAFold: 0.384 Positive Predictive Value ContextFold: 0.677 UNAFold: 0.382 Number of pairs reference - predicted secondary structure: 287 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs CRWrnafold Matthews Correlation Coefficient ContextFold: 0.723 CRWrnafold: 0.356 Sensitivity ContextFold: 0.676 CRWrnafold: 0.359 Positive Predictive Value ContextFold: 0.773 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Afold Matthews Correlation Coefficient ContextFold: 0.658 Afold: 0.371 Sensitivity ContextFold: 0.617 Afold: 0.371 Positive Predictive Value ContextFold: 0.702 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Fold Matthews Correlation Coefficient ContextFold: 0.644 Fold: 0.375 Sensitivity ContextFold: 0.605 Fold: 0.381 Positive Predictive Value ContextFold: 0.686 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs RNAfold Matthews Correlation Coefficient ContextFold: 0.644 RNAfold: 0.369 Sensitivity ContextFold: 0.605 RNAfold: 0.373 Positive Predictive Value ContextFold: 0.686 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs PknotsRG Matthews Correlation Coefficient ContextFold: 0.741 PknotsRG: 0.363 Sensitivity ContextFold: 0.696 PknotsRG: 0.363 Positive Predictive Value ContextFold: 0.789 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? ContextFold vs Murlet(seed) Matthews Correlation Coefficient ContextFold: 0.818 Murlet(seed): 0.642 Sensitivity ContextFold: 0.756 Murlet(seed): 0.606 Positive Predictive Value ContextFold: 0.886 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? ContextFold vs McQFold Matthews Correlation Coefficient ContextFold: 0.614 McQFold: 0.301 Sensitivity ContextFold: 0.561 McQFold: 0.283 Positive Predictive Value ContextFold: 0.672 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs ContextFold Matthews Correlation Coefficient NanoFolder: N/A ContextFold: N/A Sensitivity NanoFolder: N/A ContextFold: N/A Positive Predictive Value NanoFolder: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient ContextFold: N/A CentroidHomfold‑LAST: N/A Sensitivity ContextFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value ContextFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs CMfinder(seed) Matthews Correlation Coefficient ContextFold: N/A CMfinder(seed): N/A Sensitivity ContextFold: N/A CMfinder(seed): N/A Positive Predictive Value ContextFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs RNAshapes Matthews Correlation Coefficient ContextFold: N/A RNAshapes: N/A Sensitivity ContextFold: N/A RNAshapes: N/A Positive Predictive Value ContextFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Multilign(seed) Matthews Correlation Coefficient ContextFold: N/A Multilign(seed): N/A Sensitivity ContextFold: N/A Multilign(seed): N/A Positive Predictive Value ContextFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Multilign(20) Matthews Correlation Coefficient ContextFold: N/A Multilign(20): N/A Sensitivity ContextFold: N/A Multilign(20): N/A Positive Predictive Value ContextFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs ContextFold Matthews Correlation Coefficient TurboFold(20): N/A ContextFold: N/A Sensitivity TurboFold(20): N/A ContextFold: N/A Positive Predictive Value TurboFold(20): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Mastr(seed) Matthews Correlation Coefficient ContextFold: 0.602 Mastr(seed): 0.000 Sensitivity ContextFold: 0.575 Mastr(seed): 0.000 Positive Predictive Value ContextFold: 0.630 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? ContextFold vs RNAsubopt Matthews Correlation Coefficient ContextFold: N/A RNAsubopt: N/A Sensitivity ContextFold: N/A RNAsubopt: N/A Positive Predictive Value ContextFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs ContextFold Matthews Correlation Coefficient HotKnots: N/A ContextFold: N/A Sensitivity HotKnots: N/A ContextFold: N/A Positive Predictive Value HotKnots: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Pknots Matthews Correlation Coefficient ContextFold: N/A Pknots: N/A Sensitivity ContextFold: N/A Pknots: N/A Positive Predictive Value ContextFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs ContextFold Matthews Correlation Coefficient Cylofold: N/A ContextFold: N/A Sensitivity Cylofold: N/A ContextFold: N/A Positive Predictive Value Cylofold: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs MCFold Matthews Correlation Coefficient ContextFold: N/A MCFold: N/A Sensitivity ContextFold: N/A MCFold: N/A Positive Predictive Value ContextFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs ContextFold Matthews Correlation Coefficient Vsfold5: N/A ContextFold: N/A Sensitivity Vsfold5: N/A ContextFold: N/A Positive Predictive Value Vsfold5: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Vsfold4 Matthews Correlation Coefficient ContextFold: N/A Vsfold4: N/A Sensitivity ContextFold: N/A Vsfold4: N/A Positive Predictive Value ContextFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs Carnac(seed) Matthews Correlation Coefficient ContextFold: 0.952 Carnac(seed): 0.729 Sensitivity ContextFold: 0.924 Carnac(seed): 0.570 Positive Predictive Value ContextFold: 0.981 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs ContextFold Matthews Correlation Coefficient RNASampler(20): N/A ContextFold: N/A Sensitivity RNASampler(20): N/A ContextFold: N/A Positive Predictive Value RNASampler(20): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs CMfinder(20) Matthews Correlation Coefficient ContextFold: N/A CMfinder(20): N/A Sensitivity ContextFold: N/A CMfinder(20): N/A Positive Predictive Value ContextFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs ContextFold Matthews Correlation Coefficient PPfold(seed): N/A ContextFold: N/A Sensitivity PPfold(seed): N/A ContextFold: N/A Positive Predictive Value PPfold(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs ContextFold Matthews Correlation Coefficient RDfolder: N/A ContextFold: N/A Sensitivity RDfolder: N/A ContextFold: N/A Positive Predictive Value RDfolder: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs ContextFold Matthews Correlation Coefficient TurboFold(seed): N/A ContextFold: N/A Sensitivity TurboFold(seed): N/A ContextFold: N/A Positive Predictive Value TurboFold(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs ContextFold Matthews Correlation Coefficient RNASampler(seed): N/A ContextFold: N/A Sensitivity RNASampler(seed): N/A ContextFold: N/A Positive Predictive Value RNASampler(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs RNASLOpt Matthews Correlation Coefficient ContextFold: 0.608 RNASLOpt: 0.000 Sensitivity ContextFold: 0.531 RNASLOpt: 0.000 Positive Predictive Value ContextFold: 0.697 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? ContextFold vs Murlet(20) Matthews Correlation Coefficient ContextFold: 0.745 Murlet(20): 0.621 Sensitivity ContextFold: 0.707 Murlet(20): 0.544 Positive Predictive Value ContextFold: 0.785 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? ContextFold vs Alterna Matthews Correlation Coefficient ContextFold: N/A Alterna: N/A Sensitivity ContextFold: N/A Alterna: N/A Positive Predictive Value ContextFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ContextFold vs PPfold(20) Matthews Correlation Coefficient ContextFold: 0.753 PPfold(20): 0.746 Sensitivity ContextFold: 0.710 PPfold(20): 0.681 Positive Predictive Value ContextFold: 0.799 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ ContextFold vs RNAwolf Matthews Correlation Coefficient ContextFold: 0.682 RNAwolf: 0.199 Sensitivity ContextFold: 0.634 RNAwolf: 0.212 Positive Predictive Value ContextFold: 0.733 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ContextFold vs Mastr(20) Matthews Correlation Coefficient ContextFold: 0.459 Mastr(20): 0.000 Sensitivity ContextFold: 0.434 Mastr(20): 0.000 Positive Predictive Value ContextFold: 0.486 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.02343278931e-08
CentroidAlifold(seed)	64 PETfold_pre2.0(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.800 CentroidAlifold(seed): 0.796 Sensitivity PETfold_pre2.0(seed): 0.772 CentroidAlifold(seed): 0.706 Positive Predictive Value PETfold_pre2.0(seed): 0.830 CentroidAlifold(seed): 0.897 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 4.48494289621e-08	64 ContextFold vs CentroidAlifold(seed) Matthews Correlation Coefficient ContextFold: 0.821 CentroidAlifold(seed): 0.796 Sensitivity ContextFold: 0.778 CentroidAlifold(seed): 0.706 Positive Predictive Value ContextFold: 0.868 CentroidAlifold(seed): 0.897 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ CentroidAlifold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 PETfold_pre2.0(20): 0.786 Sensitivity CentroidAlifold(seed): 0.708 PETfold_pre2.0(20): 0.759 Positive Predictive Value CentroidAlifold(seed): 0.901 PETfold_pre2.0(20): 0.814 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 CentroidAlifold(20): 0.789 Sensitivity CentroidAlifold(seed): 0.708 CentroidAlifold(20): 0.698 Positive Predictive Value CentroidAlifold(seed): 0.901 CentroidAlifold(20): 0.893 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RNAalifold(seed): 0.763 Sensitivity CentroidAlifold(seed): 0.706 RNAalifold(seed): 0.699 Positive Predictive Value CentroidAlifold(seed): 0.897 RNAalifold(seed): 0.833 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs RNAalifold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 RNAalifold(20): 0.754 Sensitivity CentroidAlifold(seed): 0.708 RNAalifold(20): 0.704 Positive Predictive Value CentroidAlifold(seed): 0.901 RNAalifold(20): 0.808 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs MXScarna(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 MXScarna(seed): 0.659 Sensitivity CentroidAlifold(seed): 0.706 MXScarna(seed): 0.589 Positive Predictive Value CentroidAlifold(seed): 0.897 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs MXScarna(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 MXScarna(20): 0.648 Sensitivity CentroidAlifold(seed): 0.708 MXScarna(20): 0.591 Positive Predictive Value CentroidAlifold(seed): 0.901 MXScarna(20): 0.712 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs Carnac(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 Carnac(20): 0.597 Sensitivity CentroidAlifold(seed): 0.708 Carnac(20): 0.390 Positive Predictive Value CentroidAlifold(seed): 0.901 Carnac(20): 0.914 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs IPknot Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 IPknot: 0.581 Sensitivity CentroidAlifold(seed): 0.706 IPknot: 0.505 Positive Predictive Value CentroidAlifold(seed): 0.897 IPknot: 0.670 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs CentroidFold Matthews Correlation Coefficient CentroidAlifold(seed): 0.801 CentroidFold: 0.526 Sensitivity CentroidAlifold(seed): 0.713 CentroidFold: 0.455 Positive Predictive Value CentroidAlifold(seed): 0.899 CentroidFold: 0.610 Number of pairs reference - predicted secondary structure: 63 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs Contrafold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Contrafold: 0.513 Sensitivity CentroidAlifold(seed): 0.706 Contrafold: 0.489 Positive Predictive Value CentroidAlifold(seed): 0.897 Contrafold: 0.538 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs RSpredict(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RSpredict(seed): 0.532 Sensitivity CentroidAlifold(seed): 0.705 RSpredict(seed): 0.447 Positive Predictive Value CentroidAlifold(seed): 0.899 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs RSpredict(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 RSpredict(20): 0.591 Sensitivity CentroidAlifold(seed): 0.708 RSpredict(20): 0.530 Positive Predictive Value CentroidAlifold(seed): 0.901 RSpredict(20): 0.659 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs Sfold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Sfold: 0.487 Sensitivity CentroidAlifold(seed): 0.706 Sfold: 0.429 Positive Predictive Value CentroidAlifold(seed): 0.897 Sfold: 0.553 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs MaxExpect Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 MaxExpect: 0.440 Sensitivity CentroidAlifold(seed): 0.706 MaxExpect: 0.428 Positive Predictive Value CentroidAlifold(seed): 0.897 MaxExpect: 0.454 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs ProbKnot Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 ProbKnot: 0.434 Sensitivity CentroidAlifold(seed): 0.706 ProbKnot: 0.425 Positive Predictive Value CentroidAlifold(seed): 0.897 ProbKnot: 0.443 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs UNAFold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 UNAFold: 0.451 Sensitivity CentroidAlifold(seed): 0.706 UNAFold: 0.445 Positive Predictive Value CentroidAlifold(seed): 0.897 UNAFold: 0.458 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs CRWrnafold Matthews Correlation Coefficient CentroidAlifold(seed): 0.844 CRWrnafold: 0.515 Sensitivity CentroidAlifold(seed): 0.786 CRWrnafold: 0.508 Positive Predictive Value CentroidAlifold(seed): 0.908 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.23657817852e-08	+ CentroidAlifold(seed) vs Afold Matthews Correlation Coefficient CentroidAlifold(seed): 0.797 Afold: 0.444 Sensitivity CentroidAlifold(seed): 0.708 Afold: 0.438 Positive Predictive Value CentroidAlifold(seed): 0.898 Afold: 0.450 Number of pairs reference - predicted secondary structure: 61 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs Fold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Fold: 0.412 Sensitivity CentroidAlifold(seed): 0.706 Fold: 0.413 Positive Predictive Value CentroidAlifold(seed): 0.897 Fold: 0.411 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs RNAfold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RNAfold: 0.421 Sensitivity CentroidAlifold(seed): 0.706 RNAfold: 0.418 Positive Predictive Value CentroidAlifold(seed): 0.897 RNAfold: 0.424 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(seed) vs PknotsRG Matthews Correlation Coefficient CentroidAlifold(seed): 0.841 PknotsRG: 0.435 Sensitivity CentroidAlifold(seed): 0.775 PknotsRG: 0.430 Positive Predictive Value CentroidAlifold(seed): 0.912 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	? CentroidAlifold(seed) vs Murlet(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.863 Murlet(seed): 0.642 Sensitivity CentroidAlifold(seed): 0.809 Murlet(seed): 0.606 Positive Predictive Value CentroidAlifold(seed): 0.921 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(seed) vs McQFold Matthews Correlation Coefficient CentroidAlifold(seed): N/A McQFold: N/A Sensitivity CentroidAlifold(seed): N/A McQFold: N/A Positive Predictive Value CentroidAlifold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs CentroidAlifold(seed) Matthews Correlation Coefficient NanoFolder: N/A CentroidAlifold(seed): N/A Sensitivity NanoFolder: N/A CentroidAlifold(seed): N/A Positive Predictive Value NanoFolder: N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs CMfinder(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A CMfinder(seed): N/A Sensitivity CentroidAlifold(seed): N/A CMfinder(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs RNAshapes Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAshapes: N/A Sensitivity CentroidAlifold(seed): N/A RNAshapes: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Multilign(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A Multilign(seed): N/A Sensitivity CentroidAlifold(seed): N/A Multilign(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Multilign(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A Multilign(20): N/A Sensitivity CentroidAlifold(seed): N/A Multilign(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs TurboFold(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A TurboFold(20): N/A Sensitivity CentroidAlifold(seed): N/A TurboFold(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Mastr(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.476 Mastr(seed): 0.000 Sensitivity CentroidAlifold(seed): 0.320 Mastr(seed): 0.000 Positive Predictive Value CentroidAlifold(seed): 0.710 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(seed) vs RNAsubopt Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAsubopt: N/A Sensitivity CentroidAlifold(seed): N/A RNAsubopt: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs HotKnots Matthews Correlation Coefficient CentroidAlifold(seed): N/A HotKnots: N/A Sensitivity CentroidAlifold(seed): N/A HotKnots: N/A Positive Predictive Value CentroidAlifold(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Pknots Matthews Correlation Coefficient CentroidAlifold(seed): N/A Pknots: N/A Sensitivity CentroidAlifold(seed): N/A Pknots: N/A Positive Predictive Value CentroidAlifold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Cylofold Matthews Correlation Coefficient CentroidAlifold(seed): N/A Cylofold: N/A Sensitivity CentroidAlifold(seed): N/A Cylofold: N/A Positive Predictive Value CentroidAlifold(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs MCFold Matthews Correlation Coefficient CentroidAlifold(seed): N/A MCFold: N/A Sensitivity CentroidAlifold(seed): N/A MCFold: N/A Positive Predictive Value CentroidAlifold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Vsfold5 Matthews Correlation Coefficient CentroidAlifold(seed): N/A Vsfold5: N/A Sensitivity CentroidAlifold(seed): N/A Vsfold5: N/A Positive Predictive Value CentroidAlifold(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Vsfold4 Matthews Correlation Coefficient CentroidAlifold(seed): N/A Vsfold4: N/A Sensitivity CentroidAlifold(seed): N/A Vsfold4: N/A Positive Predictive Value CentroidAlifold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Carnac(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.902 Carnac(seed): 0.729 Sensitivity CentroidAlifold(seed): 0.858 Carnac(seed): 0.570 Positive Predictive Value CentroidAlifold(seed): 0.949 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs CentroidAlifold(seed) Matthews Correlation Coefficient RNASampler(20): N/A CentroidAlifold(seed): N/A Sensitivity RNASampler(20): N/A CentroidAlifold(seed): N/A Positive Predictive Value RNASampler(20): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs CMfinder(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A CMfinder(20): N/A Sensitivity CentroidAlifold(seed): N/A CMfinder(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs PPfold(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A PPfold(seed): N/A Sensitivity CentroidAlifold(seed): N/A PPfold(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs RDfolder Matthews Correlation Coefficient CentroidAlifold(seed): N/A RDfolder: N/A Sensitivity CentroidAlifold(seed): N/A RDfolder: N/A Positive Predictive Value CentroidAlifold(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A CentroidAlifold(seed): N/A Sensitivity TurboFold(seed): N/A CentroidAlifold(seed): N/A Positive Predictive Value TurboFold(seed): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A CentroidAlifold(seed): N/A Sensitivity RNASampler(seed): N/A CentroidAlifold(seed): N/A Positive Predictive Value RNASampler(seed): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs RNASLOpt Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNASLOpt: N/A Sensitivity CentroidAlifold(seed): N/A RNASLOpt: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Murlet(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.766 Murlet(20): 0.649 Sensitivity CentroidAlifold(seed): 0.661 Murlet(20): 0.576 Positive Predictive Value CentroidAlifold(seed): 0.888 Murlet(20): 0.731 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(seed) vs Alterna Matthews Correlation Coefficient CentroidAlifold(seed): N/A Alterna: N/A Sensitivity CentroidAlifold(seed): N/A Alterna: N/A Positive Predictive Value CentroidAlifold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs PPfold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.848 PPfold(20): 0.820 Sensitivity CentroidAlifold(seed): 0.776 PPfold(20): 0.766 Positive Predictive Value CentroidAlifold(seed): 0.926 PPfold(20): 0.879 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(seed) vs RNAwolf Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAwolf: N/A Sensitivity CentroidAlifold(seed): N/A RNAwolf: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(seed) vs Mastr(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.543 Mastr(20): 0.000 Sensitivity CentroidAlifold(seed): 0.386 Mastr(20): 0.000 Positive Predictive Value CentroidAlifold(seed): 0.765 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0
PETfold_pre2.0(20)	77 PETfold_pre2.0(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 PETfold_pre2.0(20): 0.728 Sensitivity PETfold_pre2.0(seed): 0.730 PETfold_pre2.0(20): 0.697 Positive Predictive Value PETfold_pre2.0(seed): 0.792 PETfold_pre2.0(20): 0.760 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs ContextFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 ContextFold: 0.725 Sensitivity PETfold_pre2.0(20): 0.697 ContextFold: 0.688 Positive Predictive Value PETfold_pre2.0(20): 0.760 ContextFold: 0.765 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 0.00353686086758	58 CentroidAlifold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 PETfold_pre2.0(20): 0.786 Sensitivity CentroidAlifold(seed): 0.708 PETfold_pre2.0(20): 0.759 Positive Predictive Value CentroidAlifold(seed): 0.901 PETfold_pre2.0(20): 0.814 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ PETfold_pre2.0(20) vs CentroidAlifold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 CentroidAlifold(20): 0.726 Sensitivity PETfold_pre2.0(20): 0.697 CentroidAlifold(20): 0.614 Positive Predictive Value PETfold_pre2.0(20): 0.760 CentroidAlifold(20): 0.860 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 6.06606238843e-08	+ PETfold_pre2.0(20) vs RNAalifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.771 RNAalifold(seed): 0.743 Sensitivity PETfold_pre2.0(20): 0.743 RNAalifold(seed): 0.677 Positive Predictive Value PETfold_pre2.0(20): 0.801 RNAalifold(seed): 0.817 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs RNAalifold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RNAalifold(20): 0.674 Sensitivity PETfold_pre2.0(20): 0.697 RNAalifold(20): 0.621 Positive Predictive Value PETfold_pre2.0(20): 0.760 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs MXScarna(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.786 MXScarna(seed): 0.665 Sensitivity PETfold_pre2.0(20): 0.759 MXScarna(seed): 0.595 Positive Predictive Value PETfold_pre2.0(20): 0.814 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs MXScarna(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 MXScarna(20): 0.598 Sensitivity PETfold_pre2.0(20): 0.697 MXScarna(20): 0.548 Positive Predictive Value PETfold_pre2.0(20): 0.760 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs Carnac(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Carnac(20): 0.558 Sensitivity PETfold_pre2.0(20): 0.697 Carnac(20): 0.348 Positive Predictive Value PETfold_pre2.0(20): 0.760 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs IPknot Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 IPknot: 0.534 Sensitivity PETfold_pre2.0(20): 0.697 IPknot: 0.471 Positive Predictive Value PETfold_pre2.0(20): 0.760 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs CentroidFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.730 CentroidFold: 0.492 Sensitivity PETfold_pre2.0(20): 0.700 CentroidFold: 0.430 Positive Predictive Value PETfold_pre2.0(20): 0.762 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs Contrafold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Contrafold: 0.477 Sensitivity PETfold_pre2.0(20): 0.697 Contrafold: 0.461 Positive Predictive Value PETfold_pre2.0(20): 0.760 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs RSpredict(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.782 RSpredict(seed): 0.529 Sensitivity PETfold_pre2.0(20): 0.753 RSpredict(seed): 0.448 Positive Predictive Value PETfold_pre2.0(20): 0.811 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs RSpredict(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RSpredict(20): 0.464 Sensitivity PETfold_pre2.0(20): 0.697 RSpredict(20): 0.417 Positive Predictive Value PETfold_pre2.0(20): 0.760 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs Sfold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Sfold: 0.453 Sensitivity PETfold_pre2.0(20): 0.697 Sfold: 0.403 Positive Predictive Value PETfold_pre2.0(20): 0.760 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs MaxExpect Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 MaxExpect: 0.415 Sensitivity PETfold_pre2.0(20): 0.697 MaxExpect: 0.406 Positive Predictive Value PETfold_pre2.0(20): 0.760 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs ProbKnot Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 ProbKnot: 0.408 Sensitivity PETfold_pre2.0(20): 0.697 ProbKnot: 0.403 Positive Predictive Value PETfold_pre2.0(20): 0.760 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs UNAFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 UNAFold: 0.417 Sensitivity PETfold_pre2.0(20): 0.697 UNAFold: 0.416 Positive Predictive Value PETfold_pre2.0(20): 0.760 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs CRWrnafold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.834 CRWrnafold: 0.537 Sensitivity PETfold_pre2.0(20): 0.819 CRWrnafold: 0.529 Positive Predictive Value PETfold_pre2.0(20): 0.850 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.19332990918e-08	+ PETfold_pre2.0(20) vs Afold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.729 Afold: 0.410 Sensitivity PETfold_pre2.0(20): 0.698 Afold: 0.410 Positive Predictive Value PETfold_pre2.0(20): 0.761 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs Fold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Fold: 0.385 Sensitivity PETfold_pre2.0(20): 0.697 Fold: 0.390 Positive Predictive Value PETfold_pre2.0(20): 0.760 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs RNAfold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RNAfold: 0.396 Sensitivity PETfold_pre2.0(20): 0.697 RNAfold: 0.398 Positive Predictive Value PETfold_pre2.0(20): 0.760 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ PETfold_pre2.0(20) vs PknotsRG Matthews Correlation Coefficient PETfold_pre2.0(20): 0.831 PknotsRG: 0.450 Sensitivity PETfold_pre2.0(20): 0.812 PknotsRG: 0.444 Positive Predictive Value PETfold_pre2.0(20): 0.851 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? PETfold_pre2.0(20) vs Murlet(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Murlet(seed): N/A Sensitivity PETfold_pre2.0(20): N/A Murlet(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs PETfold_pre2.0(20) Matthews Correlation Coefficient McQFold: N/A PETfold_pre2.0(20): N/A Sensitivity McQFold: N/A PETfold_pre2.0(20): N/A Positive Predictive Value McQFold: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs PETfold_pre2.0(20) Matthews Correlation Coefficient NanoFolder: N/A PETfold_pre2.0(20): N/A Sensitivity NanoFolder: N/A PETfold_pre2.0(20): N/A Positive Predictive Value NanoFolder: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs PETfold_pre2.0(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Sensitivity CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs CMfinder(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A CMfinder(seed): N/A Sensitivity PETfold_pre2.0(20): N/A CMfinder(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs RNAshapes Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAshapes: N/A Sensitivity PETfold_pre2.0(20): N/A RNAshapes: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs Multilign(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Multilign(seed): N/A Sensitivity PETfold_pre2.0(20): N/A Multilign(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs Multilign(20) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Multilign(20): N/A Sensitivity PETfold_pre2.0(20): N/A Multilign(20): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs PETfold_pre2.0(20) Matthews Correlation Coefficient TurboFold(20): N/A PETfold_pre2.0(20): N/A Sensitivity TurboFold(20): N/A PETfold_pre2.0(20): N/A Positive Predictive Value TurboFold(20): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs Mastr(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.588 Mastr(seed): 0.000 Sensitivity PETfold_pre2.0(20): 0.542 Mastr(seed): 0.000 Positive Predictive Value PETfold_pre2.0(20): 0.638 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? PETfold_pre2.0(20) vs RNAsubopt Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAsubopt: N/A Sensitivity PETfold_pre2.0(20): N/A RNAsubopt: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs PETfold_pre2.0(20) Matthews Correlation Coefficient HotKnots: N/A PETfold_pre2.0(20): N/A Sensitivity HotKnots: N/A PETfold_pre2.0(20): N/A Positive Predictive Value HotKnots: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs PETfold_pre2.0(20) Matthews Correlation Coefficient Pknots: N/A PETfold_pre2.0(20): N/A Sensitivity Pknots: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Pknots: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs PETfold_pre2.0(20) Matthews Correlation Coefficient Cylofold: N/A PETfold_pre2.0(20): N/A Sensitivity Cylofold: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Cylofold: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs MCFold Matthews Correlation Coefficient PETfold_pre2.0(20): N/A MCFold: N/A Sensitivity PETfold_pre2.0(20): N/A MCFold: N/A Positive Predictive Value PETfold_pre2.0(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs PETfold_pre2.0(20) Matthews Correlation Coefficient Vsfold5: N/A PETfold_pre2.0(20): N/A Sensitivity Vsfold5: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Vsfold5: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs PETfold_pre2.0(20) Matthews Correlation Coefficient Vsfold4: N/A PETfold_pre2.0(20): N/A Sensitivity Vsfold4: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Vsfold4: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs Carnac(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.890 Carnac(seed): 0.729 Sensitivity PETfold_pre2.0(20): 0.882 Carnac(seed): 0.570 Positive Predictive Value PETfold_pre2.0(20): 0.898 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs PETfold_pre2.0(20) Matthews Correlation Coefficient RNASampler(20): N/A PETfold_pre2.0(20): N/A Sensitivity RNASampler(20): N/A PETfold_pre2.0(20): N/A Positive Predictive Value RNASampler(20): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs CMfinder(20) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A CMfinder(20): N/A Sensitivity PETfold_pre2.0(20): N/A CMfinder(20): N/A Positive Predictive Value PETfold_pre2.0(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient PPfold(seed): N/A PETfold_pre2.0(20): N/A Sensitivity PPfold(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value PPfold(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs PETfold_pre2.0(20) Matthews Correlation Coefficient RDfolder: N/A PETfold_pre2.0(20): N/A Sensitivity RDfolder: N/A PETfold_pre2.0(20): N/A Positive Predictive Value RDfolder: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient TurboFold(seed): N/A PETfold_pre2.0(20): N/A Sensitivity TurboFold(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value TurboFold(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient RNASampler(seed): N/A PETfold_pre2.0(20): N/A Sensitivity RNASampler(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value RNASampler(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs RNASLOpt Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNASLOpt: N/A Sensitivity PETfold_pre2.0(20): N/A RNASLOpt: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs Murlet(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.733 Murlet(20): 0.621 Sensitivity PETfold_pre2.0(20): 0.698 Murlet(20): 0.544 Positive Predictive Value PETfold_pre2.0(20): 0.770 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? PETfold_pre2.0(20) vs Alterna Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Alterna: N/A Sensitivity PETfold_pre2.0(20): N/A Alterna: N/A Positive Predictive Value PETfold_pre2.0(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PETfold_pre2.0(20) vs PPfold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.751 PPfold(20): 0.746 Sensitivity PETfold_pre2.0(20): 0.717 PPfold(20): 0.681 Positive Predictive Value PETfold_pre2.0(20): 0.786 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? PETfold_pre2.0(20) vs RNAwolf Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAwolf: N/A Sensitivity PETfold_pre2.0(20): N/A RNAwolf: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ PETfold_pre2.0(20) vs Mastr(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.570 Mastr(20): 0.000 Sensitivity PETfold_pre2.0(20): 0.534 Mastr(20): 0.000 Positive Predictive Value PETfold_pre2.0(20): 0.609 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
CentroidAlifold(20)	77 PETfold_pre2.0(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 CentroidAlifold(20): 0.726 Sensitivity PETfold_pre2.0(seed): 0.730 CentroidAlifold(20): 0.614 Positive Predictive Value PETfold_pre2.0(seed): 0.792 CentroidAlifold(20): 0.860 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs ContextFold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 ContextFold: 0.725 Sensitivity CentroidAlifold(20): 0.614 ContextFold: 0.688 Positive Predictive Value CentroidAlifold(20): 0.860 ContextFold: 0.765 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 0.0452037747897	58 CentroidAlifold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 CentroidAlifold(20): 0.789 Sensitivity CentroidAlifold(seed): 0.708 CentroidAlifold(20): 0.698 Positive Predictive Value CentroidAlifold(seed): 0.901 CentroidAlifold(20): 0.893 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs CentroidAlifold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 CentroidAlifold(20): 0.726 Sensitivity PETfold_pre2.0(20): 0.697 CentroidAlifold(20): 0.614 Positive Predictive Value PETfold_pre2.0(20): 0.760 CentroidAlifold(20): 0.860 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 6.06606238843e-08		+ CentroidAlifold(20) vs RNAalifold(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.774 RNAalifold(seed): 0.743 Sensitivity CentroidAlifold(20): 0.676 RNAalifold(seed): 0.677 Positive Predictive Value CentroidAlifold(20): 0.886 RNAalifold(seed): 0.817 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs RNAalifold(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RNAalifold(20): 0.674 Sensitivity CentroidAlifold(20): 0.614 RNAalifold(20): 0.621 Positive Predictive Value CentroidAlifold(20): 0.860 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs MXScarna(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.789 MXScarna(seed): 0.665 Sensitivity CentroidAlifold(20): 0.698 MXScarna(seed): 0.595 Positive Predictive Value CentroidAlifold(20): 0.893 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs MXScarna(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 MXScarna(20): 0.598 Sensitivity CentroidAlifold(20): 0.614 MXScarna(20): 0.548 Positive Predictive Value CentroidAlifold(20): 0.860 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs Carnac(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Carnac(20): 0.558 Sensitivity CentroidAlifold(20): 0.614 Carnac(20): 0.348 Positive Predictive Value CentroidAlifold(20): 0.860 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs IPknot Matthews Correlation Coefficient CentroidAlifold(20): 0.726 IPknot: 0.534 Sensitivity CentroidAlifold(20): 0.614 IPknot: 0.471 Positive Predictive Value CentroidAlifold(20): 0.860 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs CentroidFold Matthews Correlation Coefficient CentroidAlifold(20): 0.729 CentroidFold: 0.492 Sensitivity CentroidAlifold(20): 0.618 CentroidFold: 0.430 Positive Predictive Value CentroidAlifold(20): 0.861 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs Contrafold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Contrafold: 0.477 Sensitivity CentroidAlifold(20): 0.614 Contrafold: 0.461 Positive Predictive Value CentroidAlifold(20): 0.860 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs RSpredict(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.785 RSpredict(seed): 0.529 Sensitivity CentroidAlifold(20): 0.691 RSpredict(seed): 0.448 Positive Predictive Value CentroidAlifold(20): 0.892 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs RSpredict(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RSpredict(20): 0.464 Sensitivity CentroidAlifold(20): 0.614 RSpredict(20): 0.417 Positive Predictive Value CentroidAlifold(20): 0.860 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs Sfold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Sfold: 0.453 Sensitivity CentroidAlifold(20): 0.614 Sfold: 0.403 Positive Predictive Value CentroidAlifold(20): 0.860 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs MaxExpect Matthews Correlation Coefficient CentroidAlifold(20): 0.726 MaxExpect: 0.415 Sensitivity CentroidAlifold(20): 0.614 MaxExpect: 0.406 Positive Predictive Value CentroidAlifold(20): 0.860 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs ProbKnot Matthews Correlation Coefficient CentroidAlifold(20): 0.726 ProbKnot: 0.408 Sensitivity CentroidAlifold(20): 0.614 ProbKnot: 0.403 Positive Predictive Value CentroidAlifold(20): 0.860 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs UNAFold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 UNAFold: 0.417 Sensitivity CentroidAlifold(20): 0.614 UNAFold: 0.416 Positive Predictive Value CentroidAlifold(20): 0.860 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs CRWrnafold Matthews Correlation Coefficient CentroidAlifold(20): 0.841 CRWrnafold: 0.537 Sensitivity CentroidAlifold(20): 0.775 CRWrnafold: 0.529 Positive Predictive Value CentroidAlifold(20): 0.912 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.1503931209e-08	+ CentroidAlifold(20) vs Afold Matthews Correlation Coefficient CentroidAlifold(20): 0.728 Afold: 0.410 Sensitivity CentroidAlifold(20): 0.616 Afold: 0.410 Positive Predictive Value CentroidAlifold(20): 0.861 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs Fold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Fold: 0.385 Sensitivity CentroidAlifold(20): 0.614 Fold: 0.390 Positive Predictive Value CentroidAlifold(20): 0.860 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs RNAfold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RNAfold: 0.396 Sensitivity CentroidAlifold(20): 0.614 RNAfold: 0.398 Positive Predictive Value CentroidAlifold(20): 0.860 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidAlifold(20) vs PknotsRG Matthews Correlation Coefficient CentroidAlifold(20): 0.841 PknotsRG: 0.450 Sensitivity CentroidAlifold(20): 0.772 PknotsRG: 0.444 Positive Predictive Value CentroidAlifold(20): 0.917 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? CentroidAlifold(20) vs Murlet(seed) Matthews Correlation Coefficient CentroidAlifold(20): N/A Murlet(seed): N/A Sensitivity CentroidAlifold(20): N/A Murlet(seed): N/A Positive Predictive Value CentroidAlifold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs CentroidAlifold(20) Matthews Correlation Coefficient McQFold: N/A CentroidAlifold(20): N/A Sensitivity McQFold: N/A CentroidAlifold(20): N/A Positive Predictive Value McQFold: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs CentroidAlifold(20) Matthews Correlation Coefficient NanoFolder: N/A CentroidAlifold(20): N/A Sensitivity NanoFolder: N/A CentroidAlifold(20): N/A Positive Predictive Value NanoFolder: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient CMfinder(seed): N/A CentroidAlifold(20): N/A Sensitivity CMfinder(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value CMfinder(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs RNAshapes Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAshapes: N/A Sensitivity CentroidAlifold(20): N/A RNAshapes: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient Multilign(seed): N/A CentroidAlifold(20): N/A Sensitivity Multilign(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value Multilign(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs Multilign(20) Matthews Correlation Coefficient CentroidAlifold(20): N/A Multilign(20): N/A Sensitivity CentroidAlifold(20): N/A Multilign(20): N/A Positive Predictive Value CentroidAlifold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CentroidAlifold(20) Matthews Correlation Coefficient TurboFold(20): N/A CentroidAlifold(20): N/A Sensitivity TurboFold(20): N/A CentroidAlifold(20): N/A Positive Predictive Value TurboFold(20): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs Mastr(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.503 Mastr(seed): 0.000 Sensitivity CentroidAlifold(20): 0.348 Mastr(seed): 0.000 Positive Predictive Value CentroidAlifold(20): 0.727 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(20) vs RNAsubopt Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAsubopt: N/A Sensitivity CentroidAlifold(20): N/A RNAsubopt: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CentroidAlifold(20) Matthews Correlation Coefficient HotKnots: N/A CentroidAlifold(20): N/A Sensitivity HotKnots: N/A CentroidAlifold(20): N/A Positive Predictive Value HotKnots: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CentroidAlifold(20) Matthews Correlation Coefficient Pknots: N/A CentroidAlifold(20): N/A Sensitivity Pknots: N/A CentroidAlifold(20): N/A Positive Predictive Value Pknots: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CentroidAlifold(20) Matthews Correlation Coefficient Cylofold: N/A CentroidAlifold(20): N/A Sensitivity Cylofold: N/A CentroidAlifold(20): N/A Positive Predictive Value Cylofold: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs MCFold Matthews Correlation Coefficient CentroidAlifold(20): N/A MCFold: N/A Sensitivity CentroidAlifold(20): N/A MCFold: N/A Positive Predictive Value CentroidAlifold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CentroidAlifold(20) Matthews Correlation Coefficient Vsfold5: N/A CentroidAlifold(20): N/A Sensitivity Vsfold5: N/A CentroidAlifold(20): N/A Positive Predictive Value Vsfold5: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CentroidAlifold(20) Matthews Correlation Coefficient Vsfold4: N/A CentroidAlifold(20): N/A Sensitivity Vsfold4: N/A CentroidAlifold(20): N/A Positive Predictive Value Vsfold4: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs Carnac(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.906 Carnac(seed): 0.729 Sensitivity CentroidAlifold(20): 0.860 Carnac(seed): 0.570 Positive Predictive Value CentroidAlifold(20): 0.954 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs CentroidAlifold(20) Matthews Correlation Coefficient RNASampler(20): N/A CentroidAlifold(20): N/A Sensitivity RNASampler(20): N/A CentroidAlifold(20): N/A Positive Predictive Value RNASampler(20): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs CMfinder(20) Matthews Correlation Coefficient CentroidAlifold(20): N/A CMfinder(20): N/A Sensitivity CentroidAlifold(20): N/A CMfinder(20): N/A Positive Predictive Value CentroidAlifold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient PPfold(seed): N/A CentroidAlifold(20): N/A Sensitivity PPfold(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value PPfold(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CentroidAlifold(20) Matthews Correlation Coefficient RDfolder: N/A CentroidAlifold(20): N/A Sensitivity RDfolder: N/A CentroidAlifold(20): N/A Positive Predictive Value RDfolder: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient TurboFold(seed): N/A CentroidAlifold(20): N/A Sensitivity TurboFold(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value TurboFold(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient RNASampler(seed): N/A CentroidAlifold(20): N/A Sensitivity RNASampler(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value RNASampler(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs RNASLOpt Matthews Correlation Coefficient CentroidAlifold(20): N/A RNASLOpt: N/A Sensitivity CentroidAlifold(20): N/A RNASLOpt: N/A Positive Predictive Value CentroidAlifold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidAlifold(20) vs Murlet(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Murlet(20): 0.621 Sensitivity CentroidAlifold(20): 0.617 Murlet(20): 0.544 Positive Predictive Value CentroidAlifold(20): 0.854 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs CentroidAlifold(20) Matthews Correlation Coefficient Alterna: N/A CentroidAlifold(20): N/A Sensitivity Alterna: N/A CentroidAlifold(20): N/A Positive Predictive Value Alterna: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CentroidAlifold(20) Matthews Correlation Coefficient PPfold(20): 0.746 CentroidAlifold(20): 0.745 Sensitivity PPfold(20): 0.681 CentroidAlifold(20): 0.631 Positive Predictive Value PPfold(20): 0.818 CentroidAlifold(20): 0.880 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? CentroidAlifold(20) vs RNAwolf Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAwolf: N/A Sensitivity CentroidAlifold(20): N/A RNAwolf: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ CentroidAlifold(20) vs Mastr(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.523 Mastr(20): 0.000 Sensitivity CentroidAlifold(20): 0.381 Mastr(20): 0.000 Positive Predictive Value CentroidAlifold(20): 0.718 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08
RNAalifold(seed)	68 PETfold_pre2.0(seed) vs RNAalifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.790 RNAalifold(seed): 0.744 Sensitivity PETfold_pre2.0(seed): 0.762 RNAalifold(seed): 0.678 Positive Predictive Value PETfold_pre2.0(seed): 0.820 RNAalifold(seed): 0.818 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 ContextFold vs RNAalifold(seed) Matthews Correlation Coefficient ContextFold: 0.799 RNAalifold(seed): 0.744 Sensitivity ContextFold: 0.757 RNAalifold(seed): 0.678 Positive Predictive Value ContextFold: 0.843 RNAalifold(seed): 0.818 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RNAalifold(seed): 0.763 Sensitivity CentroidAlifold(seed): 0.706 RNAalifold(seed): 0.699 Positive Predictive Value CentroidAlifold(seed): 0.897 RNAalifold(seed): 0.833 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 PETfold_pre2.0(20) vs RNAalifold(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.771 RNAalifold(seed): 0.743 Sensitivity PETfold_pre2.0(20): 0.743 RNAalifold(seed): 0.677 Positive Predictive Value PETfold_pre2.0(20): 0.801 RNAalifold(seed): 0.817 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 CentroidAlifold(20) vs RNAalifold(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.774 RNAalifold(seed): 0.743 Sensitivity CentroidAlifold(20): 0.676 RNAalifold(seed): 0.677 Positive Predictive Value CentroidAlifold(20): 0.886 RNAalifold(seed): 0.817 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ RNAalifold(seed) vs RNAalifold(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 RNAalifold(20): 0.732 Sensitivity RNAalifold(seed): 0.677 RNAalifold(20): 0.681 Positive Predictive Value RNAalifold(seed): 0.817 RNAalifold(20): 0.788 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs MXScarna(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.763 MXScarna(seed): 0.659 Sensitivity RNAalifold(seed): 0.699 MXScarna(seed): 0.589 Positive Predictive Value RNAalifold(seed): 0.833 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs MXScarna(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 MXScarna(20): 0.637 Sensitivity RNAalifold(seed): 0.677 MXScarna(20): 0.581 Positive Predictive Value RNAalifold(seed): 0.817 MXScarna(20): 0.699 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs Carnac(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 Carnac(20): 0.587 Sensitivity RNAalifold(seed): 0.677 Carnac(20): 0.377 Positive Predictive Value RNAalifold(seed): 0.817 Carnac(20): 0.912 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs IPknot Matthews Correlation Coefficient RNAalifold(seed): 0.744 IPknot: 0.570 Sensitivity RNAalifold(seed): 0.678 IPknot: 0.496 Positive Predictive Value RNAalifold(seed): 0.818 IPknot: 0.656 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs CentroidFold Matthews Correlation Coefficient RNAalifold(seed): 0.750 CentroidFold: 0.521 Sensitivity RNAalifold(seed): 0.684 CentroidFold: 0.451 Positive Predictive Value RNAalifold(seed): 0.822 CentroidFold: 0.602 Number of pairs reference - predicted secondary structure: 67 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs Contrafold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Contrafold: 0.505 Sensitivity RNAalifold(seed): 0.678 Contrafold: 0.483 Positive Predictive Value RNAalifold(seed): 0.818 Contrafold: 0.528 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs RSpredict(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.762 RSpredict(seed): 0.532 Sensitivity RNAalifold(seed): 0.698 RSpredict(seed): 0.447 Positive Predictive Value RNAalifold(seed): 0.832 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs RSpredict(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 RSpredict(20): 0.558 Sensitivity RNAalifold(seed): 0.677 RSpredict(20): 0.500 Positive Predictive Value RNAalifold(seed): 0.817 RSpredict(20): 0.622 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs Sfold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Sfold: 0.480 Sensitivity RNAalifold(seed): 0.678 Sfold: 0.422 Positive Predictive Value RNAalifold(seed): 0.818 Sfold: 0.545 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs MaxExpect Matthews Correlation Coefficient RNAalifold(seed): 0.744 MaxExpect: 0.434 Sensitivity RNAalifold(seed): 0.678 MaxExpect: 0.422 Positive Predictive Value RNAalifold(seed): 0.818 MaxExpect: 0.446 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs ProbKnot Matthews Correlation Coefficient RNAalifold(seed): 0.744 ProbKnot: 0.427 Sensitivity RNAalifold(seed): 0.678 ProbKnot: 0.419 Positive Predictive Value RNAalifold(seed): 0.818 ProbKnot: 0.435 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs UNAFold Matthews Correlation Coefficient RNAalifold(seed): 0.744 UNAFold: 0.443 Sensitivity RNAalifold(seed): 0.678 UNAFold: 0.438 Positive Predictive Value RNAalifold(seed): 0.818 UNAFold: 0.449 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs CRWrnafold Matthews Correlation Coefficient RNAalifold(seed): 0.831 CRWrnafold: 0.515 Sensitivity RNAalifold(seed): 0.783 CRWrnafold: 0.508 Positive Predictive Value RNAalifold(seed): 0.882 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.23657817852e-08	+ RNAalifold(seed) vs Afold Matthews Correlation Coefficient RNAalifold(seed): 0.746 Afold: 0.436 Sensitivity RNAalifold(seed): 0.679 Afold: 0.432 Positive Predictive Value RNAalifold(seed): 0.819 Afold: 0.442 Number of pairs reference - predicted secondary structure: 65 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs Fold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Fold: 0.406 Sensitivity RNAalifold(seed): 0.678 Fold: 0.408 Positive Predictive Value RNAalifold(seed): 0.818 Fold: 0.404 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs RNAfold Matthews Correlation Coefficient RNAalifold(seed): 0.744 RNAfold: 0.416 Sensitivity RNAalifold(seed): 0.678 RNAfold: 0.414 Positive Predictive Value RNAalifold(seed): 0.818 RNAfold: 0.418 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(seed) vs PknotsRG Matthews Correlation Coefficient RNAalifold(seed): 0.821 PknotsRG: 0.435 Sensitivity RNAalifold(seed): 0.767 PknotsRG: 0.430 Positive Predictive Value RNAalifold(seed): 0.877 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	? RNAalifold(seed) vs Murlet(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.833 Murlet(seed): 0.642 Sensitivity RNAalifold(seed): 0.793 Murlet(seed): 0.606 Positive Predictive Value RNAalifold(seed): 0.875 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? McQFold vs RNAalifold(seed) Matthews Correlation Coefficient McQFold: N/A RNAalifold(seed): N/A Sensitivity McQFold: N/A RNAalifold(seed): N/A Positive Predictive Value McQFold: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNAalifold(seed) Matthews Correlation Coefficient NanoFolder: N/A RNAalifold(seed): N/A Sensitivity NanoFolder: N/A RNAalifold(seed): N/A Positive Predictive Value NanoFolder: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs CMfinder(seed) Matthews Correlation Coefficient RNAalifold(seed): N/A CMfinder(seed): N/A Sensitivity RNAalifold(seed): N/A CMfinder(seed): N/A Positive Predictive Value RNAalifold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs RNAshapes Matthews Correlation Coefficient RNAalifold(seed): N/A RNAshapes: N/A Sensitivity RNAalifold(seed): N/A RNAshapes: N/A Positive Predictive Value RNAalifold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs Multilign(seed) Matthews Correlation Coefficient RNAalifold(seed): N/A Multilign(seed): N/A Sensitivity RNAalifold(seed): N/A Multilign(seed): N/A Positive Predictive Value RNAalifold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs Multilign(20) Matthews Correlation Coefficient RNAalifold(seed): N/A Multilign(20): N/A Sensitivity RNAalifold(seed): N/A Multilign(20): N/A Positive Predictive Value RNAalifold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAalifold(seed) Matthews Correlation Coefficient TurboFold(20): N/A RNAalifold(seed): N/A Sensitivity TurboFold(20): N/A RNAalifold(seed): N/A Positive Predictive Value TurboFold(20): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs Mastr(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.420 Mastr(seed): 0.000 Sensitivity RNAalifold(seed): 0.343 Mastr(seed): 0.000 Positive Predictive Value RNAalifold(seed): 0.514 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(seed) vs RNAsubopt Matthews Correlation Coefficient RNAalifold(seed): N/A RNAsubopt: N/A Sensitivity RNAalifold(seed): N/A RNAsubopt: N/A Positive Predictive Value RNAalifold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNAalifold(seed) Matthews Correlation Coefficient HotKnots: N/A RNAalifold(seed): N/A Sensitivity HotKnots: N/A RNAalifold(seed): N/A Positive Predictive Value HotKnots: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNAalifold(seed) Matthews Correlation Coefficient Pknots: N/A RNAalifold(seed): N/A Sensitivity Pknots: N/A RNAalifold(seed): N/A Positive Predictive Value Pknots: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAalifold(seed) Matthews Correlation Coefficient Cylofold: N/A RNAalifold(seed): N/A Sensitivity Cylofold: N/A RNAalifold(seed): N/A Positive Predictive Value Cylofold: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs MCFold Matthews Correlation Coefficient RNAalifold(seed): N/A MCFold: N/A Sensitivity RNAalifold(seed): N/A MCFold: N/A Positive Predictive Value RNAalifold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAalifold(seed) Matthews Correlation Coefficient Vsfold5: N/A RNAalifold(seed): N/A Sensitivity Vsfold5: N/A RNAalifold(seed): N/A Positive Predictive Value Vsfold5: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNAalifold(seed) Matthews Correlation Coefficient Vsfold4: N/A RNAalifold(seed): N/A Sensitivity Vsfold4: N/A RNAalifold(seed): N/A Positive Predictive Value Vsfold4: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs Carnac(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.872 Carnac(seed): 0.729 Sensitivity RNAalifold(seed): 0.841 Carnac(seed): 0.570 Positive Predictive Value RNAalifold(seed): 0.904 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs RNAalifold(seed) Matthews Correlation Coefficient RNASampler(20): N/A RNAalifold(seed): N/A Sensitivity RNASampler(20): N/A RNAalifold(seed): N/A Positive Predictive Value RNASampler(20): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs CMfinder(20) Matthews Correlation Coefficient RNAalifold(seed): N/A CMfinder(20): N/A Sensitivity RNAalifold(seed): N/A CMfinder(20): N/A Positive Predictive Value RNAalifold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient PPfold(seed): N/A RNAalifold(seed): N/A Sensitivity PPfold(seed): N/A RNAalifold(seed): N/A Positive Predictive Value PPfold(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAalifold(seed) Matthews Correlation Coefficient RDfolder: N/A RNAalifold(seed): N/A Sensitivity RDfolder: N/A RNAalifold(seed): N/A Positive Predictive Value RDfolder: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RNAalifold(seed): N/A Sensitivity TurboFold(seed): N/A RNAalifold(seed): N/A Positive Predictive Value TurboFold(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAalifold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A RNAalifold(seed): N/A Sensitivity RNASampler(seed): N/A RNAalifold(seed): N/A Positive Predictive Value RNASampler(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs RNASLOpt Matthews Correlation Coefficient RNAalifold(seed): N/A RNASLOpt: N/A Sensitivity RNAalifold(seed): N/A RNASLOpt: N/A Positive Predictive Value RNAalifold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(seed) vs Murlet(20) Matthews Correlation Coefficient RNAalifold(seed): 0.730 Murlet(20): 0.649 Sensitivity RNAalifold(seed): 0.658 Murlet(20): 0.576 Positive Predictive Value RNAalifold(seed): 0.810 Murlet(20): 0.731 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(seed) vs Alterna Matthews Correlation Coefficient RNAalifold(seed): N/A Alterna: N/A Sensitivity RNAalifold(seed): N/A Alterna: N/A Positive Predictive Value RNAalifold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNAalifold(seed) Matthews Correlation Coefficient PPfold(20): 0.746 RNAalifold(seed): 0.702 Sensitivity PPfold(20): 0.681 RNAalifold(seed): 0.628 Positive Predictive Value PPfold(20): 0.818 RNAalifold(seed): 0.785 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(seed) vs RNAwolf Matthews Correlation Coefficient RNAalifold(seed): N/A RNAwolf: N/A Sensitivity RNAalifold(seed): N/A RNAwolf: N/A Positive Predictive Value RNAalifold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ RNAalifold(seed) vs Mastr(20) Matthews Correlation Coefficient RNAalifold(seed): 0.459 Mastr(20): 0.000 Sensitivity RNAalifold(seed): 0.384 Mastr(20): 0.000 Positive Predictive Value RNAalifold(seed): 0.547 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 12 Wilcoxon single-rank test P-value: 2.1413769576e-08
RNAalifold(20)	77 PETfold_pre2.0(seed) vs RNAalifold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 RNAalifold(20): 0.674 Sensitivity PETfold_pre2.0(seed): 0.730 RNAalifold(20): 0.621 Positive Predictive Value PETfold_pre2.0(seed): 0.792 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 ContextFold vs RNAalifold(20) Matthews Correlation Coefficient ContextFold: 0.725 RNAalifold(20): 0.674 Sensitivity ContextFold: 0.688 RNAalifold(20): 0.621 Positive Predictive Value ContextFold: 0.765 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 CentroidAlifold(seed) vs RNAalifold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 RNAalifold(20): 0.754 Sensitivity CentroidAlifold(seed): 0.708 RNAalifold(20): 0.704 Positive Predictive Value CentroidAlifold(seed): 0.901 RNAalifold(20): 0.808 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs RNAalifold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RNAalifold(20): 0.674 Sensitivity PETfold_pre2.0(20): 0.697 RNAalifold(20): 0.621 Positive Predictive Value PETfold_pre2.0(20): 0.760 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs RNAalifold(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RNAalifold(20): 0.674 Sensitivity CentroidAlifold(20): 0.614 RNAalifold(20): 0.621 Positive Predictive Value CentroidAlifold(20): 0.860 RNAalifold(20): 0.732 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 RNAalifold(seed) vs RNAalifold(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 RNAalifold(20): 0.732 Sensitivity RNAalifold(seed): 0.677 RNAalifold(20): 0.681 Positive Predictive Value RNAalifold(seed): 0.817 RNAalifold(20): 0.788 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ RNAalifold(20) vs MXScarna(seed) Matthews Correlation Coefficient RNAalifold(20): 0.754 MXScarna(seed): 0.665 Sensitivity RNAalifold(20): 0.704 MXScarna(seed): 0.595 Positive Predictive Value RNAalifold(20): 0.808 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs MXScarna(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 MXScarna(20): 0.598 Sensitivity RNAalifold(20): 0.621 MXScarna(20): 0.548 Positive Predictive Value RNAalifold(20): 0.732 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs Carnac(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 Carnac(20): 0.558 Sensitivity RNAalifold(20): 0.621 Carnac(20): 0.348 Positive Predictive Value RNAalifold(20): 0.732 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs IPknot Matthews Correlation Coefficient RNAalifold(20): 0.674 IPknot: 0.534 Sensitivity RNAalifold(20): 0.621 IPknot: 0.471 Positive Predictive Value RNAalifold(20): 0.732 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs CentroidFold Matthews Correlation Coefficient RNAalifold(20): 0.678 CentroidFold: 0.492 Sensitivity RNAalifold(20): 0.625 CentroidFold: 0.430 Positive Predictive Value RNAalifold(20): 0.736 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs Contrafold Matthews Correlation Coefficient RNAalifold(20): 0.674 Contrafold: 0.477 Sensitivity RNAalifold(20): 0.621 Contrafold: 0.461 Positive Predictive Value RNAalifold(20): 0.732 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs RSpredict(seed) Matthews Correlation Coefficient RNAalifold(20): 0.747 RSpredict(seed): 0.529 Sensitivity RNAalifold(20): 0.696 RSpredict(seed): 0.448 Positive Predictive Value RNAalifold(20): 0.801 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs RSpredict(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 RSpredict(20): 0.464 Sensitivity RNAalifold(20): 0.621 RSpredict(20): 0.417 Positive Predictive Value RNAalifold(20): 0.732 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs Sfold Matthews Correlation Coefficient RNAalifold(20): 0.674 Sfold: 0.453 Sensitivity RNAalifold(20): 0.621 Sfold: 0.403 Positive Predictive Value RNAalifold(20): 0.732 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs MaxExpect Matthews Correlation Coefficient RNAalifold(20): 0.674 MaxExpect: 0.415 Sensitivity RNAalifold(20): 0.621 MaxExpect: 0.406 Positive Predictive Value RNAalifold(20): 0.732 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs ProbKnot Matthews Correlation Coefficient RNAalifold(20): 0.674 ProbKnot: 0.408 Sensitivity RNAalifold(20): 0.621 ProbKnot: 0.403 Positive Predictive Value RNAalifold(20): 0.732 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs UNAFold Matthews Correlation Coefficient RNAalifold(20): 0.674 UNAFold: 0.417 Sensitivity RNAalifold(20): 0.621 UNAFold: 0.416 Positive Predictive Value RNAalifold(20): 0.732 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs CRWrnafold Matthews Correlation Coefficient RNAalifold(20): 0.828 CRWrnafold: 0.537 Sensitivity RNAalifold(20): 0.789 CRWrnafold: 0.529 Positive Predictive Value RNAalifold(20): 0.868 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.02343278931e-08	+ RNAalifold(20) vs Afold Matthews Correlation Coefficient RNAalifold(20): 0.676 Afold: 0.410 Sensitivity RNAalifold(20): 0.622 Afold: 0.410 Positive Predictive Value RNAalifold(20): 0.735 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs Fold Matthews Correlation Coefficient RNAalifold(20): 0.674 Fold: 0.385 Sensitivity RNAalifold(20): 0.621 Fold: 0.390 Positive Predictive Value RNAalifold(20): 0.732 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs RNAfold Matthews Correlation Coefficient RNAalifold(20): 0.674 RNAfold: 0.396 Sensitivity RNAalifold(20): 0.621 RNAfold: 0.398 Positive Predictive Value RNAalifold(20): 0.732 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAalifold(20) vs PknotsRG Matthews Correlation Coefficient RNAalifold(20): 0.820 PknotsRG: 0.450 Sensitivity RNAalifold(20): 0.778 PknotsRG: 0.444 Positive Predictive Value RNAalifold(20): 0.865 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? RNAalifold(20) vs Murlet(seed) Matthews Correlation Coefficient RNAalifold(20): N/A Murlet(seed): N/A Sensitivity RNAalifold(20): N/A Murlet(seed): N/A Positive Predictive Value RNAalifold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs McQFold Matthews Correlation Coefficient RNAalifold(20): N/A McQFold: N/A Sensitivity RNAalifold(20): N/A McQFold: N/A Positive Predictive Value RNAalifold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNAalifold(20) Matthews Correlation Coefficient NanoFolder: N/A RNAalifold(20): N/A Sensitivity NanoFolder: N/A RNAalifold(20): N/A Positive Predictive Value NanoFolder: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs CMfinder(seed) Matthews Correlation Coefficient RNAalifold(20): N/A CMfinder(seed): N/A Sensitivity RNAalifold(20): N/A CMfinder(seed): N/A Positive Predictive Value RNAalifold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs RNAshapes Matthews Correlation Coefficient RNAalifold(20): N/A RNAshapes: N/A Sensitivity RNAalifold(20): N/A RNAshapes: N/A Positive Predictive Value RNAalifold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Multilign(seed) Matthews Correlation Coefficient RNAalifold(20): N/A Multilign(seed): N/A Sensitivity RNAalifold(20): N/A Multilign(seed): N/A Positive Predictive Value RNAalifold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Multilign(20) Matthews Correlation Coefficient RNAalifold(20): N/A Multilign(20): N/A Sensitivity RNAalifold(20): N/A Multilign(20): N/A Positive Predictive Value RNAalifold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAalifold(20) Matthews Correlation Coefficient TurboFold(20): N/A RNAalifold(20): N/A Sensitivity TurboFold(20): N/A RNAalifold(20): N/A Positive Predictive Value TurboFold(20): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Mastr(seed) Matthews Correlation Coefficient RNAalifold(20): 0.407 Mastr(seed): 0.000 Sensitivity RNAalifold(20): 0.356 Mastr(seed): 0.000 Positive Predictive Value RNAalifold(20): 0.466 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(20) vs RNAsubopt Matthews Correlation Coefficient RNAalifold(20): N/A RNAsubopt: N/A Sensitivity RNAalifold(20): N/A RNAsubopt: N/A Positive Predictive Value RNAalifold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNAalifold(20) Matthews Correlation Coefficient HotKnots: N/A RNAalifold(20): N/A Sensitivity HotKnots: N/A RNAalifold(20): N/A Positive Predictive Value HotKnots: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Pknots Matthews Correlation Coefficient RNAalifold(20): N/A Pknots: N/A Sensitivity RNAalifold(20): N/A Pknots: N/A Positive Predictive Value RNAalifold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAalifold(20) Matthews Correlation Coefficient Cylofold: N/A RNAalifold(20): N/A Sensitivity Cylofold: N/A RNAalifold(20): N/A Positive Predictive Value Cylofold: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs MCFold Matthews Correlation Coefficient RNAalifold(20): N/A MCFold: N/A Sensitivity RNAalifold(20): N/A MCFold: N/A Positive Predictive Value RNAalifold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAalifold(20) Matthews Correlation Coefficient Vsfold5: N/A RNAalifold(20): N/A Sensitivity Vsfold5: N/A RNAalifold(20): N/A Positive Predictive Value Vsfold5: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Vsfold4 Matthews Correlation Coefficient RNAalifold(20): N/A Vsfold4: N/A Sensitivity RNAalifold(20): N/A Vsfold4: N/A Positive Predictive Value RNAalifold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Carnac(seed) Matthews Correlation Coefficient RNAalifold(20): 0.869 Carnac(seed): 0.729 Sensitivity RNAalifold(20): 0.841 Carnac(seed): 0.570 Positive Predictive Value RNAalifold(20): 0.897 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs RNAalifold(20) Matthews Correlation Coefficient RNASampler(20): N/A RNAalifold(20): N/A Sensitivity RNASampler(20): N/A RNAalifold(20): N/A Positive Predictive Value RNASampler(20): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs CMfinder(20) Matthews Correlation Coefficient RNAalifold(20): N/A CMfinder(20): N/A Sensitivity RNAalifold(20): N/A CMfinder(20): N/A Positive Predictive Value RNAalifold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs PPfold(seed) Matthews Correlation Coefficient RNAalifold(20): N/A PPfold(seed): N/A Sensitivity RNAalifold(20): N/A PPfold(seed): N/A Positive Predictive Value RNAalifold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAalifold(20) Matthews Correlation Coefficient RDfolder: N/A RNAalifold(20): N/A Sensitivity RDfolder: N/A RNAalifold(20): N/A Positive Predictive Value RDfolder: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAalifold(20) Matthews Correlation Coefficient TurboFold(seed): N/A RNAalifold(20): N/A Sensitivity TurboFold(seed): N/A RNAalifold(20): N/A Positive Predictive Value TurboFold(seed): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAalifold(20) Matthews Correlation Coefficient RNASampler(seed): N/A RNAalifold(20): N/A Sensitivity RNASampler(seed): N/A RNAalifold(20): N/A Positive Predictive Value RNASampler(seed): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs RNASLOpt Matthews Correlation Coefficient RNAalifold(20): N/A RNASLOpt: N/A Sensitivity RNAalifold(20): N/A RNASLOpt: N/A Positive Predictive Value RNAalifold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAalifold(20) vs Murlet(20) Matthews Correlation Coefficient RNAalifold(20): 0.672 Murlet(20): 0.621 Sensitivity RNAalifold(20): 0.619 Murlet(20): 0.544 Positive Predictive Value RNAalifold(20): 0.730 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(20) vs Alterna Matthews Correlation Coefficient RNAalifold(20): N/A Alterna: N/A Sensitivity RNAalifold(20): N/A Alterna: N/A Positive Predictive Value RNAalifold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNAalifold(20) Matthews Correlation Coefficient PPfold(20): 0.746 RNAalifold(20): 0.676 Sensitivity PPfold(20): 0.681 RNAalifold(20): 0.618 Positive Predictive Value PPfold(20): 0.818 RNAalifold(20): 0.739 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? RNAalifold(20) vs RNAwolf Matthews Correlation Coefficient RNAalifold(20): N/A RNAwolf: N/A Sensitivity RNAalifold(20): N/A RNAwolf: N/A Positive Predictive Value RNAalifold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ RNAalifold(20) vs Mastr(20) Matthews Correlation Coefficient RNAalifold(20): 0.440 Mastr(20): 0.000 Sensitivity RNAalifold(20): 0.389 Mastr(20): 0.000 Positive Predictive Value RNAalifold(20): 0.498 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08
MXScarna(seed)	64 PETfold_pre2.0(seed) vs MXScarna(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.800 MXScarna(seed): 0.659 Sensitivity PETfold_pre2.0(seed): 0.772 MXScarna(seed): 0.589 Positive Predictive Value PETfold_pre2.0(seed): 0.830 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 ContextFold vs MXScarna(seed) Matthews Correlation Coefficient ContextFold: 0.821 MXScarna(seed): 0.659 Sensitivity ContextFold: 0.778 MXScarna(seed): 0.589 Positive Predictive Value ContextFold: 0.868 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs MXScarna(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 MXScarna(seed): 0.659 Sensitivity CentroidAlifold(seed): 0.706 MXScarna(seed): 0.589 Positive Predictive Value CentroidAlifold(seed): 0.897 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 PETfold_pre2.0(20) vs MXScarna(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.786 MXScarna(seed): 0.665 Sensitivity PETfold_pre2.0(20): 0.759 MXScarna(seed): 0.595 Positive Predictive Value PETfold_pre2.0(20): 0.814 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 CentroidAlifold(20) vs MXScarna(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.789 MXScarna(seed): 0.665 Sensitivity CentroidAlifold(20): 0.698 MXScarna(seed): 0.595 Positive Predictive Value CentroidAlifold(20): 0.893 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 RNAalifold(seed) vs MXScarna(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.763 MXScarna(seed): 0.659 Sensitivity RNAalifold(seed): 0.699 MXScarna(seed): 0.589 Positive Predictive Value RNAalifold(seed): 0.833 MXScarna(seed): 0.738 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 RNAalifold(20) vs MXScarna(seed) Matthews Correlation Coefficient RNAalifold(20): 0.754 MXScarna(seed): 0.665 Sensitivity RNAalifold(20): 0.704 MXScarna(seed): 0.595 Positive Predictive Value RNAalifold(20): 0.808 MXScarna(seed): 0.743 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ MXScarna(seed) vs MXScarna(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 MXScarna(20): 0.648 Sensitivity MXScarna(seed): 0.595 MXScarna(20): 0.591 Positive Predictive Value MXScarna(seed): 0.743 MXScarna(20): 0.712 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs Carnac(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 Carnac(20): 0.597 Sensitivity MXScarna(seed): 0.595 Carnac(20): 0.390 Positive Predictive Value MXScarna(seed): 0.743 Carnac(20): 0.914 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs IPknot Matthews Correlation Coefficient MXScarna(seed): 0.659 IPknot: 0.581 Sensitivity MXScarna(seed): 0.589 IPknot: 0.505 Positive Predictive Value MXScarna(seed): 0.738 IPknot: 0.670 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs CentroidFold Matthews Correlation Coefficient MXScarna(seed): 0.665 CentroidFold: 0.526 Sensitivity MXScarna(seed): 0.594 CentroidFold: 0.455 Positive Predictive Value MXScarna(seed): 0.744 CentroidFold: 0.610 Number of pairs reference - predicted secondary structure: 63 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs Contrafold Matthews Correlation Coefficient MXScarna(seed): 0.659 Contrafold: 0.513 Sensitivity MXScarna(seed): 0.589 Contrafold: 0.489 Positive Predictive Value MXScarna(seed): 0.738 Contrafold: 0.538 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs RSpredict(seed) Matthews Correlation Coefficient MXScarna(seed): 0.661 RSpredict(seed): 0.532 Sensitivity MXScarna(seed): 0.592 RSpredict(seed): 0.447 Positive Predictive Value MXScarna(seed): 0.739 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs RSpredict(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 RSpredict(20): 0.591 Sensitivity MXScarna(seed): 0.595 RSpredict(20): 0.530 Positive Predictive Value MXScarna(seed): 0.743 RSpredict(20): 0.659 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs Sfold Matthews Correlation Coefficient MXScarna(seed): 0.659 Sfold: 0.487 Sensitivity MXScarna(seed): 0.589 Sfold: 0.429 Positive Predictive Value MXScarna(seed): 0.738 Sfold: 0.553 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs MaxExpect Matthews Correlation Coefficient MXScarna(seed): 0.659 MaxExpect: 0.440 Sensitivity MXScarna(seed): 0.589 MaxExpect: 0.428 Positive Predictive Value MXScarna(seed): 0.738 MaxExpect: 0.454 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs ProbKnot Matthews Correlation Coefficient MXScarna(seed): 0.659 ProbKnot: 0.434 Sensitivity MXScarna(seed): 0.589 ProbKnot: 0.425 Positive Predictive Value MXScarna(seed): 0.738 ProbKnot: 0.443 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs UNAFold Matthews Correlation Coefficient MXScarna(seed): 0.659 UNAFold: 0.451 Sensitivity MXScarna(seed): 0.589 UNAFold: 0.445 Positive Predictive Value MXScarna(seed): 0.738 UNAFold: 0.458 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs CRWrnafold Matthews Correlation Coefficient MXScarna(seed): 0.703 CRWrnafold: 0.515 Sensitivity MXScarna(seed): 0.628 CRWrnafold: 0.508 Positive Predictive Value MXScarna(seed): 0.788 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.1503931209e-08	+ MXScarna(seed) vs Afold Matthews Correlation Coefficient MXScarna(seed): 0.662 Afold: 0.444 Sensitivity MXScarna(seed): 0.591 Afold: 0.438 Positive Predictive Value MXScarna(seed): 0.741 Afold: 0.450 Number of pairs reference - predicted secondary structure: 61 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs Fold Matthews Correlation Coefficient MXScarna(seed): 0.659 Fold: 0.412 Sensitivity MXScarna(seed): 0.589 Fold: 0.413 Positive Predictive Value MXScarna(seed): 0.738 Fold: 0.411 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs RNAfold Matthews Correlation Coefficient MXScarna(seed): 0.659 RNAfold: 0.421 Sensitivity MXScarna(seed): 0.589 RNAfold: 0.418 Positive Predictive Value MXScarna(seed): 0.738 RNAfold: 0.424 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(seed) vs PknotsRG Matthews Correlation Coefficient MXScarna(seed): 0.702 PknotsRG: 0.435 Sensitivity MXScarna(seed): 0.626 PknotsRG: 0.430 Positive Predictive Value MXScarna(seed): 0.788 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	? MXScarna(seed) vs Murlet(seed) Matthews Correlation Coefficient MXScarna(seed): 0.729 Murlet(seed): 0.642 Sensitivity MXScarna(seed): 0.677 Murlet(seed): 0.606 Positive Predictive Value MXScarna(seed): 0.784 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? McQFold vs MXScarna(seed) Matthews Correlation Coefficient McQFold: N/A MXScarna(seed): N/A Sensitivity McQFold: N/A MXScarna(seed): N/A Positive Predictive Value McQFold: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs MXScarna(seed) Matthews Correlation Coefficient NanoFolder: N/A MXScarna(seed): N/A Sensitivity NanoFolder: N/A MXScarna(seed): N/A Positive Predictive Value NanoFolder: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs MXScarna(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs MXScarna(seed) Matthews Correlation Coefficient CMfinder(seed): N/A MXScarna(seed): N/A Sensitivity CMfinder(seed): N/A MXScarna(seed): N/A Positive Predictive Value CMfinder(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs MXScarna(seed) Matthews Correlation Coefficient RNAshapes: N/A MXScarna(seed): N/A Sensitivity RNAshapes: N/A MXScarna(seed): N/A Positive Predictive Value RNAshapes: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs MXScarna(seed) Matthews Correlation Coefficient Multilign(seed): N/A MXScarna(seed): N/A Sensitivity Multilign(seed): N/A MXScarna(seed): N/A Positive Predictive Value Multilign(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs Multilign(20) Matthews Correlation Coefficient MXScarna(seed): N/A Multilign(20): N/A Sensitivity MXScarna(seed): N/A Multilign(20): N/A Positive Predictive Value MXScarna(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs MXScarna(seed) Matthews Correlation Coefficient TurboFold(20): N/A MXScarna(seed): N/A Sensitivity TurboFold(20): N/A MXScarna(seed): N/A Positive Predictive Value TurboFold(20): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs Mastr(seed) Matthews Correlation Coefficient MXScarna(seed): 0.375 Mastr(seed): 0.000 Sensitivity MXScarna(seed): 0.333 Mastr(seed): 0.000 Positive Predictive Value MXScarna(seed): 0.423 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? RNAsubopt vs MXScarna(seed) Matthews Correlation Coefficient RNAsubopt: N/A MXScarna(seed): N/A Sensitivity RNAsubopt: N/A MXScarna(seed): N/A Positive Predictive Value RNAsubopt: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs MXScarna(seed) Matthews Correlation Coefficient HotKnots: N/A MXScarna(seed): N/A Sensitivity HotKnots: N/A MXScarna(seed): N/A Positive Predictive Value HotKnots: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs MXScarna(seed) Matthews Correlation Coefficient Pknots: N/A MXScarna(seed): N/A Sensitivity Pknots: N/A MXScarna(seed): N/A Positive Predictive Value Pknots: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs MXScarna(seed) Matthews Correlation Coefficient Cylofold: N/A MXScarna(seed): N/A Sensitivity Cylofold: N/A MXScarna(seed): N/A Positive Predictive Value Cylofold: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs MCFold Matthews Correlation Coefficient MXScarna(seed): N/A MCFold: N/A Sensitivity MXScarna(seed): N/A MCFold: N/A Positive Predictive Value MXScarna(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs MXScarna(seed) Matthews Correlation Coefficient Vsfold5: N/A MXScarna(seed): N/A Sensitivity Vsfold5: N/A MXScarna(seed): N/A Positive Predictive Value Vsfold5: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs MXScarna(seed) Matthews Correlation Coefficient Vsfold4: N/A MXScarna(seed): N/A Sensitivity Vsfold4: N/A MXScarna(seed): N/A Positive Predictive Value Vsfold4: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs Carnac(seed) Matthews Correlation Coefficient MXScarna(seed): 0.832 Carnac(seed): 0.729 Sensitivity MXScarna(seed): 0.806 Carnac(seed): 0.570 Positive Predictive Value MXScarna(seed): 0.860 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs MXScarna(seed) Matthews Correlation Coefficient RNASampler(20): N/A MXScarna(seed): N/A Sensitivity RNASampler(20): N/A MXScarna(seed): N/A Positive Predictive Value RNASampler(20): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs CMfinder(20) Matthews Correlation Coefficient MXScarna(seed): N/A CMfinder(20): N/A Sensitivity MXScarna(seed): N/A CMfinder(20): N/A Positive Predictive Value MXScarna(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs MXScarna(seed) Matthews Correlation Coefficient PPfold(seed): N/A MXScarna(seed): N/A Sensitivity PPfold(seed): N/A MXScarna(seed): N/A Positive Predictive Value PPfold(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs MXScarna(seed) Matthews Correlation Coefficient RDfolder: N/A MXScarna(seed): N/A Sensitivity RDfolder: N/A MXScarna(seed): N/A Positive Predictive Value RDfolder: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs MXScarna(seed) Matthews Correlation Coefficient TurboFold(seed): N/A MXScarna(seed): N/A Sensitivity TurboFold(seed): N/A MXScarna(seed): N/A Positive Predictive Value TurboFold(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs MXScarna(seed) Matthews Correlation Coefficient RNASampler(seed): N/A MXScarna(seed): N/A Sensitivity RNASampler(seed): N/A MXScarna(seed): N/A Positive Predictive Value RNASampler(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASLOpt vs MXScarna(seed) Matthews Correlation Coefficient RNASLOpt: N/A MXScarna(seed): N/A Sensitivity RNASLOpt: N/A MXScarna(seed): N/A Positive Predictive Value RNASLOpt: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs MXScarna(seed) Matthews Correlation Coefficient Murlet(20): 0.649 MXScarna(seed): 0.632 Sensitivity Murlet(20): 0.576 MXScarna(seed): 0.567 Positive Predictive Value Murlet(20): 0.731 MXScarna(seed): 0.706 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	? Alterna vs MXScarna(seed) Matthews Correlation Coefficient Alterna: N/A MXScarna(seed): N/A Sensitivity Alterna: N/A MXScarna(seed): N/A Positive Predictive Value Alterna: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs MXScarna(seed) Matthews Correlation Coefficient PPfold(20): 0.820 MXScarna(seed): 0.713 Sensitivity PPfold(20): 0.766 MXScarna(seed): 0.629 Positive Predictive Value PPfold(20): 0.879 MXScarna(seed): 0.808 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	? RNAwolf vs MXScarna(seed) Matthews Correlation Coefficient RNAwolf: N/A MXScarna(seed): N/A Sensitivity RNAwolf: N/A MXScarna(seed): N/A Positive Predictive Value RNAwolf: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(seed) vs Mastr(20) Matthews Correlation Coefficient MXScarna(seed): 0.472 Mastr(20): 0.000 Sensitivity MXScarna(seed): 0.437 Mastr(20): 0.000 Positive Predictive Value MXScarna(seed): 0.511 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0
MXScarna(20)	77 PETfold_pre2.0(seed) vs MXScarna(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 MXScarna(20): 0.598 Sensitivity PETfold_pre2.0(seed): 0.730 MXScarna(20): 0.548 Positive Predictive Value PETfold_pre2.0(seed): 0.792 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 ContextFold vs MXScarna(20) Matthews Correlation Coefficient ContextFold: 0.725 MXScarna(20): 0.598 Sensitivity ContextFold: 0.688 MXScarna(20): 0.548 Positive Predictive Value ContextFold: 0.765 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 CentroidAlifold(seed) vs MXScarna(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 MXScarna(20): 0.648 Sensitivity CentroidAlifold(seed): 0.708 MXScarna(20): 0.591 Positive Predictive Value CentroidAlifold(seed): 0.901 MXScarna(20): 0.712 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs MXScarna(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 MXScarna(20): 0.598 Sensitivity PETfold_pre2.0(20): 0.697 MXScarna(20): 0.548 Positive Predictive Value PETfold_pre2.0(20): 0.760 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs MXScarna(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 MXScarna(20): 0.598 Sensitivity CentroidAlifold(20): 0.614 MXScarna(20): 0.548 Positive Predictive Value CentroidAlifold(20): 0.860 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 RNAalifold(seed) vs MXScarna(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 MXScarna(20): 0.637 Sensitivity RNAalifold(seed): 0.677 MXScarna(20): 0.581 Positive Predictive Value RNAalifold(seed): 0.817 MXScarna(20): 0.699 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs MXScarna(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 MXScarna(20): 0.598 Sensitivity RNAalifold(20): 0.621 MXScarna(20): 0.548 Positive Predictive Value RNAalifold(20): 0.732 MXScarna(20): 0.653 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 MXScarna(seed) vs MXScarna(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 MXScarna(20): 0.648 Sensitivity MXScarna(seed): 0.595 MXScarna(20): 0.591 Positive Predictive Value MXScarna(seed): 0.743 MXScarna(20): 0.712 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ MXScarna(20) vs Carnac(20) Matthews Correlation Coefficient MXScarna(20): 0.598 Carnac(20): 0.558 Sensitivity MXScarna(20): 0.548 Carnac(20): 0.348 Positive Predictive Value MXScarna(20): 0.653 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs IPknot Matthews Correlation Coefficient MXScarna(20): 0.598 IPknot: 0.534 Sensitivity MXScarna(20): 0.548 IPknot: 0.471 Positive Predictive Value MXScarna(20): 0.653 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs CentroidFold Matthews Correlation Coefficient MXScarna(20): 0.601 CentroidFold: 0.492 Sensitivity MXScarna(20): 0.551 CentroidFold: 0.430 Positive Predictive Value MXScarna(20): 0.656 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs Contrafold Matthews Correlation Coefficient MXScarna(20): 0.598 Contrafold: 0.477 Sensitivity MXScarna(20): 0.548 Contrafold: 0.461 Positive Predictive Value MXScarna(20): 0.653 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs RSpredict(seed) Matthews Correlation Coefficient MXScarna(20): 0.645 RSpredict(seed): 0.529 Sensitivity MXScarna(20): 0.589 RSpredict(seed): 0.448 Positive Predictive Value MXScarna(20): 0.707 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs RSpredict(20) Matthews Correlation Coefficient MXScarna(20): 0.598 RSpredict(20): 0.464 Sensitivity MXScarna(20): 0.548 RSpredict(20): 0.417 Positive Predictive Value MXScarna(20): 0.653 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs Sfold Matthews Correlation Coefficient MXScarna(20): 0.598 Sfold: 0.453 Sensitivity MXScarna(20): 0.548 Sfold: 0.403 Positive Predictive Value MXScarna(20): 0.653 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs MaxExpect Matthews Correlation Coefficient MXScarna(20): 0.598 MaxExpect: 0.415 Sensitivity MXScarna(20): 0.548 MaxExpect: 0.406 Positive Predictive Value MXScarna(20): 0.653 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs ProbKnot Matthews Correlation Coefficient MXScarna(20): 0.598 ProbKnot: 0.408 Sensitivity MXScarna(20): 0.548 ProbKnot: 0.403 Positive Predictive Value MXScarna(20): 0.653 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs UNAFold Matthews Correlation Coefficient MXScarna(20): 0.598 UNAFold: 0.417 Sensitivity MXScarna(20): 0.548 UNAFold: 0.416 Positive Predictive Value MXScarna(20): 0.653 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs CRWrnafold Matthews Correlation Coefficient MXScarna(20): 0.690 CRWrnafold: 0.537 Sensitivity MXScarna(20): 0.628 CRWrnafold: 0.529 Positive Predictive Value MXScarna(20): 0.759 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.23657817852e-08	+ MXScarna(20) vs Afold Matthews Correlation Coefficient MXScarna(20): 0.599 Afold: 0.410 Sensitivity MXScarna(20): 0.549 Afold: 0.410 Positive Predictive Value MXScarna(20): 0.654 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs Fold Matthews Correlation Coefficient MXScarna(20): 0.598 Fold: 0.385 Sensitivity MXScarna(20): 0.548 Fold: 0.390 Positive Predictive Value MXScarna(20): 0.653 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs RNAfold Matthews Correlation Coefficient MXScarna(20): 0.598 RNAfold: 0.396 Sensitivity MXScarna(20): 0.548 RNAfold: 0.398 Positive Predictive Value MXScarna(20): 0.653 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MXScarna(20) vs PknotsRG Matthews Correlation Coefficient MXScarna(20): 0.696 PknotsRG: 0.450 Sensitivity MXScarna(20): 0.633 PknotsRG: 0.444 Positive Predictive Value MXScarna(20): 0.764 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs MXScarna(20) Matthews Correlation Coefficient Murlet(seed): N/A MXScarna(20): N/A Sensitivity Murlet(seed): N/A MXScarna(20): N/A Positive Predictive Value Murlet(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs MXScarna(20) Matthews Correlation Coefficient McQFold: N/A MXScarna(20): N/A Sensitivity McQFold: N/A MXScarna(20): N/A Positive Predictive Value McQFold: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs MXScarna(20) Matthews Correlation Coefficient NanoFolder: N/A MXScarna(20): N/A Sensitivity NanoFolder: N/A MXScarna(20): N/A Positive Predictive Value NanoFolder: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient MXScarna(20): N/A CentroidHomfold‑LAST: N/A Sensitivity MXScarna(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value MXScarna(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs MXScarna(20) Matthews Correlation Coefficient CMfinder(seed): N/A MXScarna(20): N/A Sensitivity CMfinder(seed): N/A MXScarna(20): N/A Positive Predictive Value CMfinder(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs MXScarna(20) Matthews Correlation Coefficient RNAshapes: N/A MXScarna(20): N/A Sensitivity RNAshapes: N/A MXScarna(20): N/A Positive Predictive Value RNAshapes: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs MXScarna(20) Matthews Correlation Coefficient Multilign(seed): N/A MXScarna(20): N/A Sensitivity Multilign(seed): N/A MXScarna(20): N/A Positive Predictive Value Multilign(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs Multilign(20) Matthews Correlation Coefficient MXScarna(20): N/A Multilign(20): N/A Sensitivity MXScarna(20): N/A Multilign(20): N/A Positive Predictive Value MXScarna(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs MXScarna(20) Matthews Correlation Coefficient TurboFold(20): N/A MXScarna(20): N/A Sensitivity TurboFold(20): N/A MXScarna(20): N/A Positive Predictive Value TurboFold(20): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs Mastr(seed) Matthews Correlation Coefficient MXScarna(20): 0.396 Mastr(seed): 0.000 Sensitivity MXScarna(20): 0.359 Mastr(seed): 0.000 Positive Predictive Value MXScarna(20): 0.438 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? RNAsubopt vs MXScarna(20) Matthews Correlation Coefficient RNAsubopt: N/A MXScarna(20): N/A Sensitivity RNAsubopt: N/A MXScarna(20): N/A Positive Predictive Value RNAsubopt: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs MXScarna(20) Matthews Correlation Coefficient HotKnots: N/A MXScarna(20): N/A Sensitivity HotKnots: N/A MXScarna(20): N/A Positive Predictive Value HotKnots: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs MXScarna(20) Matthews Correlation Coefficient Pknots: N/A MXScarna(20): N/A Sensitivity Pknots: N/A MXScarna(20): N/A Positive Predictive Value Pknots: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs MXScarna(20) Matthews Correlation Coefficient Cylofold: N/A MXScarna(20): N/A Sensitivity Cylofold: N/A MXScarna(20): N/A Positive Predictive Value Cylofold: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs MCFold Matthews Correlation Coefficient MXScarna(20): N/A MCFold: N/A Sensitivity MXScarna(20): N/A MCFold: N/A Positive Predictive Value MXScarna(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs MXScarna(20) Matthews Correlation Coefficient Vsfold5: N/A MXScarna(20): N/A Sensitivity Vsfold5: N/A MXScarna(20): N/A Positive Predictive Value Vsfold5: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs MXScarna(20) Matthews Correlation Coefficient Vsfold4: N/A MXScarna(20): N/A Sensitivity Vsfold4: N/A MXScarna(20): N/A Positive Predictive Value Vsfold4: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs Carnac(seed) Matthews Correlation Coefficient MXScarna(20): 0.836 Carnac(seed): 0.729 Sensitivity MXScarna(20): 0.806 Carnac(seed): 0.570 Positive Predictive Value MXScarna(20): 0.868 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs MXScarna(20) Matthews Correlation Coefficient RNASampler(20): N/A MXScarna(20): N/A Sensitivity RNASampler(20): N/A MXScarna(20): N/A Positive Predictive Value RNASampler(20): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs CMfinder(20) Matthews Correlation Coefficient MXScarna(20): N/A CMfinder(20): N/A Sensitivity MXScarna(20): N/A CMfinder(20): N/A Positive Predictive Value MXScarna(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs MXScarna(20) Matthews Correlation Coefficient PPfold(seed): N/A MXScarna(20): N/A Sensitivity PPfold(seed): N/A MXScarna(20): N/A Positive Predictive Value PPfold(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs MXScarna(20) Matthews Correlation Coefficient RDfolder: N/A MXScarna(20): N/A Sensitivity RDfolder: N/A MXScarna(20): N/A Positive Predictive Value RDfolder: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs MXScarna(20) Matthews Correlation Coefficient TurboFold(seed): N/A MXScarna(20): N/A Sensitivity TurboFold(seed): N/A MXScarna(20): N/A Positive Predictive Value TurboFold(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs MXScarna(20) Matthews Correlation Coefficient RNASampler(seed): N/A MXScarna(20): N/A Sensitivity RNASampler(seed): N/A MXScarna(20): N/A Positive Predictive Value RNASampler(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MXScarna(20) vs RNASLOpt Matthews Correlation Coefficient MXScarna(20): N/A RNASLOpt: N/A Sensitivity MXScarna(20): N/A RNASLOpt: N/A Positive Predictive Value MXScarna(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs MXScarna(20) Matthews Correlation Coefficient Murlet(20): 0.621 MXScarna(20): 0.589 Sensitivity Murlet(20): 0.544 MXScarna(20): 0.534 Positive Predictive Value Murlet(20): 0.708 MXScarna(20): 0.650 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs MXScarna(20) Matthews Correlation Coefficient Alterna: N/A MXScarna(20): N/A Sensitivity Alterna: N/A MXScarna(20): N/A Positive Predictive Value Alterna: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs MXScarna(20) Matthews Correlation Coefficient PPfold(20): 0.746 MXScarna(20): 0.629 Sensitivity PPfold(20): 0.681 MXScarna(20): 0.574 Positive Predictive Value PPfold(20): 0.818 MXScarna(20): 0.689 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? RNAwolf vs MXScarna(20) Matthews Correlation Coefficient RNAwolf: N/A MXScarna(20): N/A Sensitivity RNAwolf: N/A MXScarna(20): N/A Positive Predictive Value RNAwolf: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ MXScarna(20) vs Mastr(20) Matthews Correlation Coefficient MXScarna(20): 0.455 Mastr(20): 0.000 Sensitivity MXScarna(20): 0.424 Mastr(20): 0.000 Positive Predictive Value MXScarna(20): 0.489 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
Carnac(20)	77 PETfold_pre2.0(seed) vs Carnac(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 Carnac(20): 0.558 Sensitivity PETfold_pre2.0(seed): 0.730 Carnac(20): 0.348 Positive Predictive Value PETfold_pre2.0(seed): 0.792 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 ContextFold vs Carnac(20) Matthews Correlation Coefficient ContextFold: 0.725 Carnac(20): 0.558 Sensitivity ContextFold: 0.688 Carnac(20): 0.348 Positive Predictive Value ContextFold: 0.765 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 CentroidAlifold(seed) vs Carnac(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 Carnac(20): 0.597 Sensitivity CentroidAlifold(seed): 0.708 Carnac(20): 0.390 Positive Predictive Value CentroidAlifold(seed): 0.901 Carnac(20): 0.914 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs Carnac(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Carnac(20): 0.558 Sensitivity PETfold_pre2.0(20): 0.697 Carnac(20): 0.348 Positive Predictive Value PETfold_pre2.0(20): 0.760 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs Carnac(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Carnac(20): 0.558 Sensitivity CentroidAlifold(20): 0.614 Carnac(20): 0.348 Positive Predictive Value CentroidAlifold(20): 0.860 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 RNAalifold(seed) vs Carnac(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 Carnac(20): 0.587 Sensitivity RNAalifold(seed): 0.677 Carnac(20): 0.377 Positive Predictive Value RNAalifold(seed): 0.817 Carnac(20): 0.912 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs Carnac(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 Carnac(20): 0.558 Sensitivity RNAalifold(20): 0.621 Carnac(20): 0.348 Positive Predictive Value RNAalifold(20): 0.732 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 MXScarna(seed) vs Carnac(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 Carnac(20): 0.597 Sensitivity MXScarna(seed): 0.595 Carnac(20): 0.390 Positive Predictive Value MXScarna(seed): 0.743 Carnac(20): 0.914 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs Carnac(20) Matthews Correlation Coefficient MXScarna(20): 0.598 Carnac(20): 0.558 Sensitivity MXScarna(20): 0.548 Carnac(20): 0.348 Positive Predictive Value MXScarna(20): 0.653 Carnac(20): 0.895 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ Carnac(20) vs IPknot Matthews Correlation Coefficient Carnac(20): 0.558 IPknot: 0.534 Sensitivity Carnac(20): 0.348 IPknot: 0.471 Positive Predictive Value Carnac(20): 0.895 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs CentroidFold Matthews Correlation Coefficient Carnac(20): 0.559 CentroidFold: 0.492 Sensitivity Carnac(20): 0.349 CentroidFold: 0.430 Positive Predictive Value Carnac(20): 0.895 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs Contrafold Matthews Correlation Coefficient Carnac(20): 0.558 Contrafold: 0.477 Sensitivity Carnac(20): 0.348 Contrafold: 0.461 Positive Predictive Value Carnac(20): 0.895 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs RSpredict(seed) Matthews Correlation Coefficient Carnac(20): 0.600 RSpredict(seed): 0.529 Sensitivity Carnac(20): 0.392 RSpredict(seed): 0.448 Positive Predictive Value Carnac(20): 0.917 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs RSpredict(20) Matthews Correlation Coefficient Carnac(20): 0.558 RSpredict(20): 0.464 Sensitivity Carnac(20): 0.348 RSpredict(20): 0.417 Positive Predictive Value Carnac(20): 0.895 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs Sfold Matthews Correlation Coefficient Carnac(20): 0.558 Sfold: 0.453 Sensitivity Carnac(20): 0.348 Sfold: 0.403 Positive Predictive Value Carnac(20): 0.895 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs MaxExpect Matthews Correlation Coefficient Carnac(20): 0.558 MaxExpect: 0.415 Sensitivity Carnac(20): 0.348 MaxExpect: 0.406 Positive Predictive Value Carnac(20): 0.895 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs ProbKnot Matthews Correlation Coefficient Carnac(20): 0.558 ProbKnot: 0.408 Sensitivity Carnac(20): 0.348 ProbKnot: 0.403 Positive Predictive Value Carnac(20): 0.895 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs UNAFold Matthews Correlation Coefficient Carnac(20): 0.558 UNAFold: 0.417 Sensitivity Carnac(20): 0.348 UNAFold: 0.416 Positive Predictive Value Carnac(20): 0.895 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs CRWrnafold Matthews Correlation Coefficient Carnac(20): 0.615 CRWrnafold: 0.537 Sensitivity Carnac(20): 0.410 CRWrnafold: 0.529 Positive Predictive Value Carnac(20): 0.922 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs Afold Matthews Correlation Coefficient Carnac(20): 0.559 Afold: 0.410 Sensitivity Carnac(20): 0.349 Afold: 0.410 Positive Predictive Value Carnac(20): 0.895 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs Fold Matthews Correlation Coefficient Carnac(20): 0.558 Fold: 0.385 Sensitivity Carnac(20): 0.348 Fold: 0.390 Positive Predictive Value Carnac(20): 0.895 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs RNAfold Matthews Correlation Coefficient Carnac(20): 0.558 RNAfold: 0.396 Sensitivity Carnac(20): 0.348 RNAfold: 0.398 Positive Predictive Value Carnac(20): 0.895 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Carnac(20) vs PknotsRG Matthews Correlation Coefficient Carnac(20): 0.622 PknotsRG: 0.450 Sensitivity Carnac(20): 0.420 PknotsRG: 0.444 Positive Predictive Value Carnac(20): 0.922 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Carnac(20) vs Murlet(seed) Matthews Correlation Coefficient Carnac(20): N/A Murlet(seed): N/A Sensitivity Carnac(20): N/A Murlet(seed): N/A Positive Predictive Value Carnac(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Carnac(20) Matthews Correlation Coefficient McQFold: N/A Carnac(20): N/A Sensitivity McQFold: N/A Carnac(20): N/A Positive Predictive Value McQFold: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Carnac(20) Matthews Correlation Coefficient NanoFolder: N/A Carnac(20): N/A Sensitivity NanoFolder: N/A Carnac(20): N/A Positive Predictive Value NanoFolder: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Carnac(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Carnac(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Carnac(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Carnac(20) Matthews Correlation Coefficient CMfinder(seed): N/A Carnac(20): N/A Sensitivity CMfinder(seed): N/A Carnac(20): N/A Positive Predictive Value CMfinder(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs RNAshapes Matthews Correlation Coefficient Carnac(20): N/A RNAshapes: N/A Sensitivity Carnac(20): N/A RNAshapes: N/A Positive Predictive Value Carnac(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Carnac(20) Matthews Correlation Coefficient Multilign(seed): N/A Carnac(20): N/A Sensitivity Multilign(seed): N/A Carnac(20): N/A Positive Predictive Value Multilign(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs Multilign(20) Matthews Correlation Coefficient Carnac(20): N/A Multilign(20): N/A Sensitivity Carnac(20): N/A Multilign(20): N/A Positive Predictive Value Carnac(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Carnac(20) Matthews Correlation Coefficient TurboFold(20): N/A Carnac(20): N/A Sensitivity TurboFold(20): N/A Carnac(20): N/A Positive Predictive Value TurboFold(20): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs Mastr(seed) Matthews Correlation Coefficient Carnac(20): 0.520 Mastr(seed): 0.000 Sensitivity Carnac(20): 0.287 Mastr(seed): 0.000 Positive Predictive Value Carnac(20): 0.941 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? Carnac(20) vs RNAsubopt Matthews Correlation Coefficient Carnac(20): N/A RNAsubopt: N/A Sensitivity Carnac(20): N/A RNAsubopt: N/A Positive Predictive Value Carnac(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Carnac(20) Matthews Correlation Coefficient HotKnots: N/A Carnac(20): N/A Sensitivity HotKnots: N/A Carnac(20): N/A Positive Predictive Value HotKnots: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Carnac(20) Matthews Correlation Coefficient Pknots: N/A Carnac(20): N/A Sensitivity Pknots: N/A Carnac(20): N/A Positive Predictive Value Pknots: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Carnac(20) Matthews Correlation Coefficient Cylofold: N/A Carnac(20): N/A Sensitivity Cylofold: N/A Carnac(20): N/A Positive Predictive Value Cylofold: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs MCFold Matthews Correlation Coefficient Carnac(20): N/A MCFold: N/A Sensitivity Carnac(20): N/A MCFold: N/A Positive Predictive Value Carnac(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Carnac(20) Matthews Correlation Coefficient Vsfold5: N/A Carnac(20): N/A Sensitivity Vsfold5: N/A Carnac(20): N/A Positive Predictive Value Vsfold5: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Carnac(20) Matthews Correlation Coefficient Vsfold4: N/A Carnac(20): N/A Sensitivity Vsfold4: N/A Carnac(20): N/A Positive Predictive Value Vsfold4: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs Carnac(seed) Matthews Correlation Coefficient Carnac(20): 0.743 Carnac(seed): 0.729 Sensitivity Carnac(20): 0.590 Carnac(seed): 0.570 Positive Predictive Value Carnac(20): 0.938 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs Carnac(20) Matthews Correlation Coefficient RNASampler(20): N/A Carnac(20): N/A Sensitivity RNASampler(20): N/A Carnac(20): N/A Positive Predictive Value RNASampler(20): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs CMfinder(20) Matthews Correlation Coefficient Carnac(20): N/A CMfinder(20): N/A Sensitivity Carnac(20): N/A CMfinder(20): N/A Positive Predictive Value Carnac(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Carnac(20) Matthews Correlation Coefficient PPfold(seed): N/A Carnac(20): N/A Sensitivity PPfold(seed): N/A Carnac(20): N/A Positive Predictive Value PPfold(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Carnac(20) Matthews Correlation Coefficient RDfolder: N/A Carnac(20): N/A Sensitivity RDfolder: N/A Carnac(20): N/A Positive Predictive Value RDfolder: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Carnac(20) Matthews Correlation Coefficient TurboFold(seed): N/A Carnac(20): N/A Sensitivity TurboFold(seed): N/A Carnac(20): N/A Positive Predictive Value TurboFold(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Carnac(20) Matthews Correlation Coefficient RNASampler(seed): N/A Carnac(20): N/A Sensitivity RNASampler(seed): N/A Carnac(20): N/A Positive Predictive Value RNASampler(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(20) vs RNASLOpt Matthews Correlation Coefficient Carnac(20): N/A RNASLOpt: N/A Sensitivity Carnac(20): N/A RNASLOpt: N/A Positive Predictive Value Carnac(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Carnac(20) Matthews Correlation Coefficient Murlet(20): 0.621 Carnac(20): 0.528 Sensitivity Murlet(20): 0.544 Carnac(20): 0.320 Positive Predictive Value Murlet(20): 0.708 Carnac(20): 0.872 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs Carnac(20) Matthews Correlation Coefficient Alterna: N/A Carnac(20): N/A Sensitivity Alterna: N/A Carnac(20): N/A Positive Predictive Value Alterna: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Carnac(20) Matthews Correlation Coefficient PPfold(20): 0.746 Carnac(20): 0.564 Sensitivity PPfold(20): 0.681 Carnac(20): 0.338 Positive Predictive Value PPfold(20): 0.818 Carnac(20): 0.940 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? Carnac(20) vs RNAwolf Matthews Correlation Coefficient Carnac(20): N/A RNAwolf: N/A Sensitivity Carnac(20): N/A RNAwolf: N/A Positive Predictive Value Carnac(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ Carnac(20) vs Mastr(20) Matthews Correlation Coefficient Carnac(20): 0.445 Mastr(20): 0.000 Sensitivity Carnac(20): 0.241 Mastr(20): 0.000 Positive Predictive Value Carnac(20): 0.824 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
IPknot	83 PETfold_pre2.0(seed) vs IPknot Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 IPknot: 0.531 Sensitivity PETfold_pre2.0(seed): 0.731 IPknot: 0.464 Positive Predictive Value PETfold_pre2.0(seed): 0.793 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 ContextFold vs IPknot Matthews Correlation Coefficient ContextFold: 0.647 IPknot: 0.501 Sensitivity ContextFold: 0.607 IPknot: 0.431 Positive Predictive Value ContextFold: 0.689 IPknot: 0.583 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs IPknot Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 IPknot: 0.581 Sensitivity CentroidAlifold(seed): 0.706 IPknot: 0.505 Positive Predictive Value CentroidAlifold(seed): 0.897 IPknot: 0.670 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs IPknot Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 IPknot: 0.534 Sensitivity PETfold_pre2.0(20): 0.697 IPknot: 0.471 Positive Predictive Value PETfold_pre2.0(20): 0.760 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs IPknot Matthews Correlation Coefficient CentroidAlifold(20): 0.726 IPknot: 0.534 Sensitivity CentroidAlifold(20): 0.614 IPknot: 0.471 Positive Predictive Value CentroidAlifold(20): 0.860 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs IPknot Matthews Correlation Coefficient RNAalifold(seed): 0.744 IPknot: 0.570 Sensitivity RNAalifold(seed): 0.678 IPknot: 0.496 Positive Predictive Value RNAalifold(seed): 0.818 IPknot: 0.656 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs IPknot Matthews Correlation Coefficient RNAalifold(20): 0.674 IPknot: 0.534 Sensitivity RNAalifold(20): 0.621 IPknot: 0.471 Positive Predictive Value RNAalifold(20): 0.732 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs IPknot Matthews Correlation Coefficient MXScarna(seed): 0.659 IPknot: 0.581 Sensitivity MXScarna(seed): 0.589 IPknot: 0.505 Positive Predictive Value MXScarna(seed): 0.738 IPknot: 0.670 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs IPknot Matthews Correlation Coefficient MXScarna(20): 0.598 IPknot: 0.534 Sensitivity MXScarna(20): 0.548 IPknot: 0.471 Positive Predictive Value MXScarna(20): 0.653 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs IPknot Matthews Correlation Coefficient Carnac(20): 0.558 IPknot: 0.534 Sensitivity Carnac(20): 0.348 IPknot: 0.471 Positive Predictive Value Carnac(20): 0.895 IPknot: 0.607 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ IPknot vs CentroidFold Matthews Correlation Coefficient IPknot: 0.474 CentroidFold: 0.445 Sensitivity IPknot: 0.402 CentroidFold: 0.378 Positive Predictive Value IPknot: 0.560 CentroidFold: 0.525 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs Contrafold Matthews Correlation Coefficient IPknot: 0.501 Contrafold: 0.468 Sensitivity IPknot: 0.431 Contrafold: 0.448 Positive Predictive Value IPknot: 0.583 Contrafold: 0.488 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs RSpredict(seed) Matthews Correlation Coefficient IPknot: 0.574 RSpredict(seed): 0.532 Sensitivity IPknot: 0.500 RSpredict(seed): 0.447 Positive Predictive Value IPknot: 0.660 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs RSpredict(20) Matthews Correlation Coefficient IPknot: 0.534 RSpredict(20): 0.464 Sensitivity IPknot: 0.471 RSpredict(20): 0.417 Positive Predictive Value IPknot: 0.607 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs Sfold Matthews Correlation Coefficient IPknot: 0.501 Sfold: 0.416 Sensitivity IPknot: 0.431 Sfold: 0.367 Positive Predictive Value IPknot: 0.583 Sfold: 0.471 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs MaxExpect Matthews Correlation Coefficient IPknot: 0.501 MaxExpect: 0.408 Sensitivity IPknot: 0.431 MaxExpect: 0.397 Positive Predictive Value IPknot: 0.583 MaxExpect: 0.420 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs ProbKnot Matthews Correlation Coefficient IPknot: 0.501 ProbKnot: 0.401 Sensitivity IPknot: 0.431 ProbKnot: 0.397 Positive Predictive Value IPknot: 0.583 ProbKnot: 0.404 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs UNAFold Matthews Correlation Coefficient IPknot: 0.501 UNAFold: 0.380 Sensitivity IPknot: 0.431 UNAFold: 0.380 Positive Predictive Value IPknot: 0.583 UNAFold: 0.380 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs CRWrnafold Matthews Correlation Coefficient IPknot: 0.476 CRWrnafold: 0.356 Sensitivity IPknot: 0.393 CRWrnafold: 0.359 Positive Predictive Value IPknot: 0.576 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs Afold Matthews Correlation Coefficient IPknot: 0.496 Afold: 0.371 Sensitivity IPknot: 0.423 Afold: 0.372 Positive Predictive Value IPknot: 0.583 Afold: 0.371 Number of pairs reference - predicted secondary structure: 219 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs Fold Matthews Correlation Coefficient IPknot: 0.501 Fold: 0.376 Sensitivity IPknot: 0.431 Fold: 0.381 Positive Predictive Value IPknot: 0.583 Fold: 0.370 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs RNAfold Matthews Correlation Coefficient IPknot: 0.501 RNAfold: 0.370 Sensitivity IPknot: 0.431 RNAfold: 0.374 Positive Predictive Value IPknot: 0.583 RNAfold: 0.367 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs PknotsRG Matthews Correlation Coefficient IPknot: 0.504 PknotsRG: 0.363 Sensitivity IPknot: 0.422 PknotsRG: 0.363 Positive Predictive Value IPknot: 0.603 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs IPknot Matthews Correlation Coefficient Murlet(seed): 0.642 IPknot: 0.499 Sensitivity Murlet(seed): 0.606 IPknot: 0.419 Positive Predictive Value Murlet(seed): 0.681 IPknot: 0.595 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? IPknot vs McQFold Matthews Correlation Coefficient IPknot: 0.426 McQFold: 0.301 Sensitivity IPknot: 0.337 McQFold: 0.283 Positive Predictive Value IPknot: 0.539 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs IPknot Matthews Correlation Coefficient NanoFolder: N/A IPknot: N/A Sensitivity NanoFolder: N/A IPknot: N/A Positive Predictive Value NanoFolder: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs IPknot Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A IPknot: N/A Sensitivity CentroidHomfold‑LAST: N/A IPknot: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs IPknot Matthews Correlation Coefficient CMfinder(seed): N/A IPknot: N/A Sensitivity CMfinder(seed): N/A IPknot: N/A Positive Predictive Value CMfinder(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs IPknot Matthews Correlation Coefficient RNAshapes: N/A IPknot: N/A Sensitivity RNAshapes: N/A IPknot: N/A Positive Predictive Value RNAshapes: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs IPknot Matthews Correlation Coefficient Multilign(seed): N/A IPknot: N/A Sensitivity Multilign(seed): N/A IPknot: N/A Positive Predictive Value Multilign(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(20) vs IPknot Matthews Correlation Coefficient Multilign(20): N/A IPknot: N/A Sensitivity Multilign(20): N/A IPknot: N/A Positive Predictive Value Multilign(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs IPknot Matthews Correlation Coefficient TurboFold(20): N/A IPknot: N/A Sensitivity TurboFold(20): N/A IPknot: N/A Positive Predictive Value TurboFold(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? IPknot vs Mastr(seed) Matthews Correlation Coefficient IPknot: 0.465 Mastr(seed): 0.000 Sensitivity IPknot: 0.384 Mastr(seed): 0.000 Positive Predictive Value IPknot: 0.563 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? RNAsubopt vs IPknot Matthews Correlation Coefficient RNAsubopt: N/A IPknot: N/A Sensitivity RNAsubopt: N/A IPknot: N/A Positive Predictive Value RNAsubopt: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs IPknot Matthews Correlation Coefficient HotKnots: N/A IPknot: N/A Sensitivity HotKnots: N/A IPknot: N/A Positive Predictive Value HotKnots: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs IPknot Matthews Correlation Coefficient Pknots: N/A IPknot: N/A Sensitivity Pknots: N/A IPknot: N/A Positive Predictive Value Pknots: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs IPknot Matthews Correlation Coefficient Cylofold: N/A IPknot: N/A Sensitivity Cylofold: N/A IPknot: N/A Positive Predictive Value Cylofold: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MCFold vs IPknot Matthews Correlation Coefficient MCFold: N/A IPknot: N/A Sensitivity MCFold: N/A IPknot: N/A Positive Predictive Value MCFold: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs IPknot Matthews Correlation Coefficient Vsfold5: N/A IPknot: N/A Sensitivity Vsfold5: N/A IPknot: N/A Positive Predictive Value Vsfold5: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs IPknot Matthews Correlation Coefficient Vsfold4: N/A IPknot: N/A Sensitivity Vsfold4: N/A IPknot: N/A Positive Predictive Value Vsfold4: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? IPknot vs Carnac(seed) Matthews Correlation Coefficient IPknot: 0.825 Carnac(seed): 0.729 Sensitivity IPknot: 0.769 Carnac(seed): 0.570 Positive Predictive Value IPknot: 0.887 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs IPknot Matthews Correlation Coefficient RNASampler(20): N/A IPknot: N/A Sensitivity RNASampler(20): N/A IPknot: N/A Positive Predictive Value RNASampler(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? IPknot vs CMfinder(20) Matthews Correlation Coefficient IPknot: N/A CMfinder(20): N/A Sensitivity IPknot: N/A CMfinder(20): N/A Positive Predictive Value IPknot: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs IPknot Matthews Correlation Coefficient PPfold(seed): N/A IPknot: N/A Sensitivity PPfold(seed): N/A IPknot: N/A Positive Predictive Value PPfold(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs IPknot Matthews Correlation Coefficient RDfolder: N/A IPknot: N/A Sensitivity RDfolder: N/A IPknot: N/A Positive Predictive Value RDfolder: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs IPknot Matthews Correlation Coefficient TurboFold(seed): N/A IPknot: N/A Sensitivity TurboFold(seed): N/A IPknot: N/A Positive Predictive Value TurboFold(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs IPknot Matthews Correlation Coefficient RNASampler(seed): N/A IPknot: N/A Sensitivity RNASampler(seed): N/A IPknot: N/A Positive Predictive Value RNASampler(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? IPknot vs RNASLOpt Matthews Correlation Coefficient IPknot: 0.329 RNASLOpt: 0.000 Sensitivity IPknot: 0.235 RNASLOpt: 0.000 Positive Predictive Value IPknot: 0.462 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs IPknot Matthews Correlation Coefficient Murlet(20): 0.621 IPknot: 0.536 Sensitivity Murlet(20): 0.544 IPknot: 0.466 Positive Predictive Value Murlet(20): 0.708 IPknot: 0.616 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs IPknot Matthews Correlation Coefficient Alterna: N/A IPknot: N/A Sensitivity Alterna: N/A IPknot: N/A Positive Predictive Value Alterna: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs IPknot Matthews Correlation Coefficient PPfold(20): 0.746 IPknot: 0.540 Sensitivity PPfold(20): 0.681 IPknot: 0.464 Positive Predictive Value PPfold(20): 0.818 IPknot: 0.628 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ IPknot vs RNAwolf Matthews Correlation Coefficient IPknot: 0.441 RNAwolf: 0.199 Sensitivity IPknot: 0.354 RNAwolf: 0.212 Positive Predictive Value IPknot: 0.550 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ IPknot vs Mastr(20) Matthews Correlation Coefficient IPknot: 0.385 Mastr(20): 0.000 Sensitivity IPknot: 0.339 Mastr(20): 0.000 Positive Predictive Value IPknot: 0.439 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08
CentroidFold	82 PETfold_pre2.0(seed) vs CentroidFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.764 CentroidFold: 0.489 Sensitivity PETfold_pre2.0(seed): 0.734 CentroidFold: 0.425 Positive Predictive Value PETfold_pre2.0(seed): 0.795 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 82 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 ContextFold vs CentroidFold Matthews Correlation Coefficient ContextFold: 0.673 CentroidFold: 0.445 Sensitivity ContextFold: 0.634 CentroidFold: 0.378 Positive Predictive Value ContextFold: 0.716 CentroidFold: 0.525 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	63 CentroidAlifold(seed) vs CentroidFold Matthews Correlation Coefficient CentroidAlifold(seed): 0.801 CentroidFold: 0.526 Sensitivity CentroidAlifold(seed): 0.713 CentroidFold: 0.455 Positive Predictive Value CentroidAlifold(seed): 0.899 CentroidFold: 0.610 Number of pairs reference - predicted secondary structure: 63 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 PETfold_pre2.0(20) vs CentroidFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.730 CentroidFold: 0.492 Sensitivity PETfold_pre2.0(20): 0.700 CentroidFold: 0.430 Positive Predictive Value PETfold_pre2.0(20): 0.762 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 CentroidAlifold(20) vs CentroidFold Matthews Correlation Coefficient CentroidAlifold(20): 0.729 CentroidFold: 0.492 Sensitivity CentroidAlifold(20): 0.618 CentroidFold: 0.430 Positive Predictive Value CentroidAlifold(20): 0.861 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	67 RNAalifold(seed) vs CentroidFold Matthews Correlation Coefficient RNAalifold(seed): 0.750 CentroidFold: 0.521 Sensitivity RNAalifold(seed): 0.684 CentroidFold: 0.451 Positive Predictive Value RNAalifold(seed): 0.822 CentroidFold: 0.602 Number of pairs reference - predicted secondary structure: 67 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 RNAalifold(20) vs CentroidFold Matthews Correlation Coefficient RNAalifold(20): 0.678 CentroidFold: 0.492 Sensitivity RNAalifold(20): 0.625 CentroidFold: 0.430 Positive Predictive Value RNAalifold(20): 0.736 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	63 MXScarna(seed) vs CentroidFold Matthews Correlation Coefficient MXScarna(seed): 0.665 CentroidFold: 0.526 Sensitivity MXScarna(seed): 0.594 CentroidFold: 0.455 Positive Predictive Value MXScarna(seed): 0.744 CentroidFold: 0.610 Number of pairs reference - predicted secondary structure: 63 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 MXScarna(20) vs CentroidFold Matthews Correlation Coefficient MXScarna(20): 0.601 CentroidFold: 0.492 Sensitivity MXScarna(20): 0.551 CentroidFold: 0.430 Positive Predictive Value MXScarna(20): 0.656 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 Carnac(20) vs CentroidFold Matthews Correlation Coefficient Carnac(20): 0.559 CentroidFold: 0.492 Sensitivity Carnac(20): 0.349 CentroidFold: 0.430 Positive Predictive Value Carnac(20): 0.895 CentroidFold: 0.563 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 IPknot vs CentroidFold Matthews Correlation Coefficient IPknot: 0.474 CentroidFold: 0.445 Sensitivity IPknot: 0.402 CentroidFold: 0.378 Positive Predictive Value IPknot: 0.560 CentroidFold: 0.525 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ CentroidFold vs Contrafold Matthews Correlation Coefficient CentroidFold: 0.445 Contrafold: 0.437 Sensitivity CentroidFold: 0.378 Contrafold: 0.416 Positive Predictive Value CentroidFold: 0.525 Contrafold: 0.458 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	- RSpredict(seed) vs CentroidFold Matthews Correlation Coefficient RSpredict(seed): 0.542 CentroidFold: 0.523 Sensitivity RSpredict(seed): 0.456 CentroidFold: 0.453 Positive Predictive Value RSpredict(seed): 0.645 CentroidFold: 0.604 Number of pairs reference - predicted secondary structure: 56 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs RSpredict(20) Matthews Correlation Coefficient CentroidFold: 0.492 RSpredict(20): 0.470 Sensitivity CentroidFold: 0.430 RSpredict(20): 0.423 Positive Predictive Value CentroidFold: 0.563 RSpredict(20): 0.523 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs Sfold Matthews Correlation Coefficient CentroidFold: 0.445 Sfold: 0.397 Sensitivity CentroidFold: 0.378 Sfold: 0.349 Positive Predictive Value CentroidFold: 0.525 Sfold: 0.452 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs MaxExpect Matthews Correlation Coefficient CentroidFold: 0.445 MaxExpect: 0.379 Sensitivity CentroidFold: 0.378 MaxExpect: 0.368 Positive Predictive Value CentroidFold: 0.525 MaxExpect: 0.391 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs ProbKnot Matthews Correlation Coefficient CentroidFold: 0.445 ProbKnot: 0.372 Sensitivity CentroidFold: 0.378 ProbKnot: 0.369 Positive Predictive Value CentroidFold: 0.525 ProbKnot: 0.375 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs UNAFold Matthews Correlation Coefficient CentroidFold: 0.445 UNAFold: 0.360 Sensitivity CentroidFold: 0.378 UNAFold: 0.361 Positive Predictive Value CentroidFold: 0.525 UNAFold: 0.360 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs CRWrnafold Matthews Correlation Coefficient CentroidFold: 0.445 CRWrnafold: 0.356 Sensitivity CentroidFold: 0.371 CRWrnafold: 0.359 Positive Predictive Value CentroidFold: 0.534 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs Afold Matthews Correlation Coefficient CentroidFold: 0.452 Afold: 0.362 Sensitivity CentroidFold: 0.382 Afold: 0.363 Positive Predictive Value CentroidFold: 0.534 Afold: 0.362 Number of pairs reference - predicted secondary structure: 183 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs Fold Matthews Correlation Coefficient CentroidFold: 0.445 Fold: 0.347 Sensitivity CentroidFold: 0.378 Fold: 0.353 Positive Predictive Value CentroidFold: 0.525 Fold: 0.342 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs RNAfold Matthews Correlation Coefficient CentroidFold: 0.445 RNAfold: 0.346 Sensitivity CentroidFold: 0.378 RNAfold: 0.350 Positive Predictive Value CentroidFold: 0.525 RNAfold: 0.343 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs PknotsRG Matthews Correlation Coefficient CentroidFold: 0.469 PknotsRG: 0.363 Sensitivity CentroidFold: 0.394 PknotsRG: 0.363 Positive Predictive Value CentroidFold: 0.558 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs CentroidFold Matthews Correlation Coefficient Murlet(seed): 0.642 CentroidFold: 0.460 Sensitivity Murlet(seed): 0.606 CentroidFold: 0.406 Positive Predictive Value Murlet(seed): 0.681 CentroidFold: 0.522 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? CentroidFold vs McQFold Matthews Correlation Coefficient CentroidFold: 0.437 McQFold: 0.301 Sensitivity CentroidFold: 0.353 McQFold: 0.283 Positive Predictive Value CentroidFold: 0.542 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs CentroidFold Matthews Correlation Coefficient NanoFolder: N/A CentroidFold: N/A Sensitivity NanoFolder: N/A CentroidFold: N/A Positive Predictive Value NanoFolder: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidFold: N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs CentroidFold Matthews Correlation Coefficient CMfinder(seed): N/A CentroidFold: N/A Sensitivity CMfinder(seed): N/A CentroidFold: N/A Positive Predictive Value CMfinder(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs RNAshapes Matthews Correlation Coefficient CentroidFold: N/A RNAshapes: N/A Sensitivity CentroidFold: N/A RNAshapes: N/A Positive Predictive Value CentroidFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CentroidFold Matthews Correlation Coefficient Multilign(seed): N/A CentroidFold: N/A Sensitivity Multilign(seed): N/A CentroidFold: N/A Positive Predictive Value Multilign(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs Multilign(20) Matthews Correlation Coefficient CentroidFold: N/A Multilign(20): N/A Sensitivity CentroidFold: N/A Multilign(20): N/A Positive Predictive Value CentroidFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CentroidFold Matthews Correlation Coefficient TurboFold(20): N/A CentroidFold: N/A Sensitivity TurboFold(20): N/A CentroidFold: N/A Positive Predictive Value TurboFold(20): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs Mastr(seed) Matthews Correlation Coefficient CentroidFold: 0.432 Mastr(seed): 0.000 Sensitivity CentroidFold: 0.376 Mastr(seed): 0.000 Positive Predictive Value CentroidFold: 0.497 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? CentroidFold vs RNAsubopt Matthews Correlation Coefficient CentroidFold: N/A RNAsubopt: N/A Sensitivity CentroidFold: N/A RNAsubopt: N/A Positive Predictive Value CentroidFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CentroidFold Matthews Correlation Coefficient HotKnots: N/A CentroidFold: N/A Sensitivity HotKnots: N/A CentroidFold: N/A Positive Predictive Value HotKnots: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CentroidFold Matthews Correlation Coefficient Pknots: N/A CentroidFold: N/A Sensitivity Pknots: N/A CentroidFold: N/A Positive Predictive Value Pknots: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CentroidFold Matthews Correlation Coefficient Cylofold: N/A CentroidFold: N/A Sensitivity Cylofold: N/A CentroidFold: N/A Positive Predictive Value Cylofold: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs MCFold Matthews Correlation Coefficient CentroidFold: N/A MCFold: N/A Sensitivity CentroidFold: N/A MCFold: N/A Positive Predictive Value CentroidFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CentroidFold Matthews Correlation Coefficient Vsfold5: N/A CentroidFold: N/A Sensitivity Vsfold5: N/A CentroidFold: N/A Positive Predictive Value Vsfold5: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CentroidFold Matthews Correlation Coefficient Vsfold4: N/A CentroidFold: N/A Sensitivity Vsfold4: N/A CentroidFold: N/A Positive Predictive Value Vsfold4: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs Carnac(seed) Matthews Correlation Coefficient CentroidFold: 0.793 Carnac(seed): 0.729 Sensitivity CentroidFold: 0.758 Carnac(seed): 0.570 Positive Predictive Value CentroidFold: 0.830 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs CentroidFold Matthews Correlation Coefficient RNASampler(20): N/A CentroidFold: N/A Sensitivity RNASampler(20): N/A CentroidFold: N/A Positive Predictive Value RNASampler(20): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs CMfinder(20) Matthews Correlation Coefficient CentroidFold: N/A CMfinder(20): N/A Sensitivity CentroidFold: N/A CMfinder(20): N/A Positive Predictive Value CentroidFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs CentroidFold Matthews Correlation Coefficient PPfold(seed): N/A CentroidFold: N/A Sensitivity PPfold(seed): N/A CentroidFold: N/A Positive Predictive Value PPfold(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CentroidFold Matthews Correlation Coefficient RDfolder: N/A CentroidFold: N/A Sensitivity RDfolder: N/A CentroidFold: N/A Positive Predictive Value RDfolder: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CentroidFold Matthews Correlation Coefficient TurboFold(seed): N/A CentroidFold: N/A Sensitivity TurboFold(seed): N/A CentroidFold: N/A Positive Predictive Value TurboFold(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CentroidFold Matthews Correlation Coefficient RNASampler(seed): N/A CentroidFold: N/A Sensitivity RNASampler(seed): N/A CentroidFold: N/A Positive Predictive Value RNASampler(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidFold vs RNASLOpt Matthews Correlation Coefficient CentroidFold: 0.307 RNASLOpt: 0.000 Sensitivity CentroidFold: 0.212 RNASLOpt: 0.000 Positive Predictive Value CentroidFold: 0.447 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs CentroidFold Matthews Correlation Coefficient Murlet(20): 0.621 CentroidFold: 0.486 Sensitivity Murlet(20): 0.544 CentroidFold: 0.413 Positive Predictive Value Murlet(20): 0.708 CentroidFold: 0.572 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs CentroidFold Matthews Correlation Coefficient Alterna: N/A CentroidFold: N/A Sensitivity Alterna: N/A CentroidFold: N/A Positive Predictive Value Alterna: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CentroidFold Matthews Correlation Coefficient PPfold(20): 0.746 CentroidFold: 0.487 Sensitivity PPfold(20): 0.681 CentroidFold: 0.419 Positive Predictive Value PPfold(20): 0.818 CentroidFold: 0.565 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ CentroidFold vs RNAwolf Matthews Correlation Coefficient CentroidFold: 0.435 RNAwolf: 0.199 Sensitivity CentroidFold: 0.353 RNAwolf: 0.212 Positive Predictive Value CentroidFold: 0.535 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CentroidFold vs Mastr(20) Matthews Correlation Coefficient CentroidFold: 0.383 Mastr(20): 0.000 Sensitivity CentroidFold: 0.336 Mastr(20): 0.000 Positive Predictive Value CentroidFold: 0.437 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 26 Wilcoxon single-rank test P-value: 5.23657817852e-08
Contrafold	83 PETfold_pre2.0(seed) vs Contrafold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Contrafold: 0.475 Sensitivity PETfold_pre2.0(seed): 0.731 Contrafold: 0.458 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs Contrafold Matthews Correlation Coefficient ContextFold: 0.644 Contrafold: 0.466 Sensitivity ContextFold: 0.605 Contrafold: 0.447 Positive Predictive Value ContextFold: 0.686 Contrafold: 0.487 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs Contrafold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Contrafold: 0.513 Sensitivity CentroidAlifold(seed): 0.706 Contrafold: 0.489 Positive Predictive Value CentroidAlifold(seed): 0.897 Contrafold: 0.538 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs Contrafold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Contrafold: 0.477 Sensitivity PETfold_pre2.0(20): 0.697 Contrafold: 0.461 Positive Predictive Value PETfold_pre2.0(20): 0.760 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs Contrafold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Contrafold: 0.477 Sensitivity CentroidAlifold(20): 0.614 Contrafold: 0.461 Positive Predictive Value CentroidAlifold(20): 0.860 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs Contrafold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Contrafold: 0.505 Sensitivity RNAalifold(seed): 0.678 Contrafold: 0.483 Positive Predictive Value RNAalifold(seed): 0.818 Contrafold: 0.528 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs Contrafold Matthews Correlation Coefficient RNAalifold(20): 0.674 Contrafold: 0.477 Sensitivity RNAalifold(20): 0.621 Contrafold: 0.461 Positive Predictive Value RNAalifold(20): 0.732 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs Contrafold Matthews Correlation Coefficient MXScarna(seed): 0.659 Contrafold: 0.513 Sensitivity MXScarna(seed): 0.589 Contrafold: 0.489 Positive Predictive Value MXScarna(seed): 0.738 Contrafold: 0.538 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs Contrafold Matthews Correlation Coefficient MXScarna(20): 0.598 Contrafold: 0.477 Sensitivity MXScarna(20): 0.548 Contrafold: 0.461 Positive Predictive Value MXScarna(20): 0.653 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs Contrafold Matthews Correlation Coefficient Carnac(20): 0.558 Contrafold: 0.477 Sensitivity Carnac(20): 0.348 Contrafold: 0.461 Positive Predictive Value Carnac(20): 0.895 Contrafold: 0.494 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs Contrafold Matthews Correlation Coefficient IPknot: 0.501 Contrafold: 0.468 Sensitivity IPknot: 0.431 Contrafold: 0.448 Positive Predictive Value IPknot: 0.583 Contrafold: 0.488 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs Contrafold Matthews Correlation Coefficient CentroidFold: 0.445 Contrafold: 0.437 Sensitivity CentroidFold: 0.378 Contrafold: 0.416 Positive Predictive Value CentroidFold: 0.525 Contrafold: 0.458 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08		- RSpredict(seed) vs Contrafold Matthews Correlation Coefficient RSpredict(seed): 0.532 Contrafold: 0.508 Sensitivity RSpredict(seed): 0.447 Contrafold: 0.485 Positive Predictive Value RSpredict(seed): 0.632 Contrafold: 0.532 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs RSpredict(20) Matthews Correlation Coefficient Contrafold: 0.477 RSpredict(20): 0.464 Sensitivity Contrafold: 0.461 RSpredict(20): 0.417 Positive Predictive Value Contrafold: 0.494 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 8.81311508309e-08	+ Contrafold vs Sfold Matthews Correlation Coefficient Contrafold: 0.466 Sfold: 0.414 Sensitivity Contrafold: 0.447 Sfold: 0.366 Positive Predictive Value Contrafold: 0.487 Sfold: 0.469 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs MaxExpect Matthews Correlation Coefficient Contrafold: 0.466 MaxExpect: 0.407 Sensitivity Contrafold: 0.447 MaxExpect: 0.396 Positive Predictive Value Contrafold: 0.487 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs ProbKnot Matthews Correlation Coefficient Contrafold: 0.466 ProbKnot: 0.400 Sensitivity Contrafold: 0.447 ProbKnot: 0.396 Positive Predictive Value Contrafold: 0.487 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs UNAFold Matthews Correlation Coefficient Contrafold: 0.466 UNAFold: 0.379 Sensitivity Contrafold: 0.447 UNAFold: 0.379 Positive Predictive Value Contrafold: 0.487 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs CRWrnafold Matthews Correlation Coefficient Contrafold: 0.438 CRWrnafold: 0.356 Sensitivity Contrafold: 0.412 CRWrnafold: 0.359 Positive Predictive Value Contrafold: 0.467 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs Afold Matthews Correlation Coefficient Contrafold: 0.459 Afold: 0.371 Sensitivity Contrafold: 0.437 Afold: 0.371 Positive Predictive Value Contrafold: 0.481 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs Fold Matthews Correlation Coefficient Contrafold: 0.466 Fold: 0.375 Sensitivity Contrafold: 0.447 Fold: 0.381 Positive Predictive Value Contrafold: 0.487 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs RNAfold Matthews Correlation Coefficient Contrafold: 0.466 RNAfold: 0.369 Sensitivity Contrafold: 0.447 RNAfold: 0.373 Positive Predictive Value Contrafold: 0.487 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs PknotsRG Matthews Correlation Coefficient Contrafold: 0.461 PknotsRG: 0.363 Sensitivity Contrafold: 0.435 PknotsRG: 0.363 Positive Predictive Value Contrafold: 0.489 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs Contrafold Matthews Correlation Coefficient Murlet(seed): 0.642 Contrafold: 0.458 Sensitivity Murlet(seed): 0.606 Contrafold: 0.435 Positive Predictive Value Murlet(seed): 0.681 Contrafold: 0.482 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Contrafold vs McQFold Matthews Correlation Coefficient Contrafold: 0.428 McQFold: 0.301 Sensitivity Contrafold: 0.386 McQFold: 0.283 Positive Predictive Value Contrafold: 0.476 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs Contrafold Matthews Correlation Coefficient NanoFolder: N/A Contrafold: N/A Sensitivity NanoFolder: N/A Contrafold: N/A Positive Predictive Value NanoFolder: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Contrafold: N/A CentroidHomfold‑LAST: N/A Sensitivity Contrafold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Contrafold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs CMfinder(seed) Matthews Correlation Coefficient Contrafold: N/A CMfinder(seed): N/A Sensitivity Contrafold: N/A CMfinder(seed): N/A Positive Predictive Value Contrafold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs RNAshapes Matthews Correlation Coefficient Contrafold: N/A RNAshapes: N/A Sensitivity Contrafold: N/A RNAshapes: N/A Positive Predictive Value Contrafold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Contrafold Matthews Correlation Coefficient Multilign(seed): N/A Contrafold: N/A Sensitivity Multilign(seed): N/A Contrafold: N/A Positive Predictive Value Multilign(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs Multilign(20) Matthews Correlation Coefficient Contrafold: N/A Multilign(20): N/A Sensitivity Contrafold: N/A Multilign(20): N/A Positive Predictive Value Contrafold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Contrafold Matthews Correlation Coefficient TurboFold(20): N/A Contrafold: N/A Sensitivity TurboFold(20): N/A Contrafold: N/A Positive Predictive Value TurboFold(20): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs Mastr(seed) Matthews Correlation Coefficient Contrafold: 0.425 Mastr(seed): 0.000 Sensitivity Contrafold: 0.413 Mastr(seed): 0.000 Positive Predictive Value Contrafold: 0.437 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? Contrafold vs RNAsubopt Matthews Correlation Coefficient Contrafold: N/A RNAsubopt: N/A Sensitivity Contrafold: N/A RNAsubopt: N/A Positive Predictive Value Contrafold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Contrafold Matthews Correlation Coefficient HotKnots: N/A Contrafold: N/A Sensitivity HotKnots: N/A Contrafold: N/A Positive Predictive Value HotKnots: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Contrafold Matthews Correlation Coefficient Pknots: N/A Contrafold: N/A Sensitivity Pknots: N/A Contrafold: N/A Positive Predictive Value Pknots: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Contrafold Matthews Correlation Coefficient Cylofold: N/A Contrafold: N/A Sensitivity Cylofold: N/A Contrafold: N/A Positive Predictive Value Cylofold: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs MCFold Matthews Correlation Coefficient Contrafold: N/A MCFold: N/A Sensitivity Contrafold: N/A MCFold: N/A Positive Predictive Value Contrafold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Contrafold Matthews Correlation Coefficient Vsfold5: N/A Contrafold: N/A Sensitivity Vsfold5: N/A Contrafold: N/A Positive Predictive Value Vsfold5: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Contrafold Matthews Correlation Coefficient Vsfold4: N/A Contrafold: N/A Sensitivity Vsfold4: N/A Contrafold: N/A Positive Predictive Value Vsfold4: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs Carnac(seed) Matthews Correlation Coefficient Contrafold: 0.775 Carnac(seed): 0.729 Sensitivity Contrafold: 0.766 Carnac(seed): 0.570 Positive Predictive Value Contrafold: 0.783 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs Contrafold Matthews Correlation Coefficient RNASampler(20): N/A Contrafold: N/A Sensitivity RNASampler(20): N/A Contrafold: N/A Positive Predictive Value RNASampler(20): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs CMfinder(20) Matthews Correlation Coefficient Contrafold: N/A CMfinder(20): N/A Sensitivity Contrafold: N/A CMfinder(20): N/A Positive Predictive Value Contrafold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Contrafold Matthews Correlation Coefficient PPfold(seed): N/A Contrafold: N/A Sensitivity PPfold(seed): N/A Contrafold: N/A Positive Predictive Value PPfold(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Contrafold Matthews Correlation Coefficient RDfolder: N/A Contrafold: N/A Sensitivity RDfolder: N/A Contrafold: N/A Positive Predictive Value RDfolder: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Contrafold Matthews Correlation Coefficient TurboFold(seed): N/A Contrafold: N/A Sensitivity TurboFold(seed): N/A Contrafold: N/A Positive Predictive Value TurboFold(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Contrafold Matthews Correlation Coefficient RNASampler(seed): N/A Contrafold: N/A Sensitivity RNASampler(seed): N/A Contrafold: N/A Positive Predictive Value RNASampler(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Contrafold vs RNASLOpt Matthews Correlation Coefficient Contrafold: 0.336 RNASLOpt: 0.000 Sensitivity Contrafold: 0.262 RNASLOpt: 0.000 Positive Predictive Value Contrafold: 0.433 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs Contrafold Matthews Correlation Coefficient Murlet(20): 0.621 Contrafold: 0.467 Sensitivity Murlet(20): 0.544 Contrafold: 0.447 Positive Predictive Value Murlet(20): 0.708 Contrafold: 0.488 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Contrafold vs Alterna Matthews Correlation Coefficient Contrafold: N/A Alterna: N/A Sensitivity Contrafold: N/A Alterna: N/A Positive Predictive Value Contrafold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Contrafold Matthews Correlation Coefficient PPfold(20): 0.746 Contrafold: 0.470 Sensitivity PPfold(20): 0.681 Contrafold: 0.453 Positive Predictive Value PPfold(20): 0.818 Contrafold: 0.489 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ Contrafold vs RNAwolf Matthews Correlation Coefficient Contrafold: 0.433 RNAwolf: 0.199 Sensitivity Contrafold: 0.400 RNAwolf: 0.212 Positive Predictive Value Contrafold: 0.470 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Contrafold vs Mastr(20) Matthews Correlation Coefficient Contrafold: 0.371 Mastr(20): 0.000 Sensitivity Contrafold: 0.364 Mastr(20): 0.000 Positive Predictive Value Contrafold: 0.379 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08
RSpredict(seed)	57 PETfold_pre2.0(seed) vs RSpredict(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.801 RSpredict(seed): 0.532 Sensitivity PETfold_pre2.0(seed): 0.773 RSpredict(seed): 0.447 Positive Predictive Value PETfold_pre2.0(seed): 0.831 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 ContextFold vs RSpredict(seed) Matthews Correlation Coefficient ContextFold: 0.818 RSpredict(seed): 0.532 Sensitivity ContextFold: 0.775 RSpredict(seed): 0.447 Positive Predictive Value ContextFold: 0.864 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 CentroidAlifold(seed) vs RSpredict(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RSpredict(seed): 0.532 Sensitivity CentroidAlifold(seed): 0.705 RSpredict(seed): 0.447 Positive Predictive Value CentroidAlifold(seed): 0.899 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 PETfold_pre2.0(20) vs RSpredict(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.782 RSpredict(seed): 0.529 Sensitivity PETfold_pre2.0(20): 0.753 RSpredict(seed): 0.448 Positive Predictive Value PETfold_pre2.0(20): 0.811 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 CentroidAlifold(20) vs RSpredict(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.785 RSpredict(seed): 0.529 Sensitivity CentroidAlifold(20): 0.691 RSpredict(seed): 0.448 Positive Predictive Value CentroidAlifold(20): 0.892 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RNAalifold(seed) vs RSpredict(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.762 RSpredict(seed): 0.532 Sensitivity RNAalifold(seed): 0.698 RSpredict(seed): 0.447 Positive Predictive Value RNAalifold(seed): 0.832 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 RNAalifold(20) vs RSpredict(seed) Matthews Correlation Coefficient RNAalifold(20): 0.747 RSpredict(seed): 0.529 Sensitivity RNAalifold(20): 0.696 RSpredict(seed): 0.448 Positive Predictive Value RNAalifold(20): 0.801 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 MXScarna(seed) vs RSpredict(seed) Matthews Correlation Coefficient MXScarna(seed): 0.661 RSpredict(seed): 0.532 Sensitivity MXScarna(seed): 0.592 RSpredict(seed): 0.447 Positive Predictive Value MXScarna(seed): 0.739 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 MXScarna(20) vs RSpredict(seed) Matthews Correlation Coefficient MXScarna(20): 0.645 RSpredict(seed): 0.529 Sensitivity MXScarna(20): 0.589 RSpredict(seed): 0.448 Positive Predictive Value MXScarna(20): 0.707 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 Carnac(20) vs RSpredict(seed) Matthews Correlation Coefficient Carnac(20): 0.600 RSpredict(seed): 0.529 Sensitivity Carnac(20): 0.392 RSpredict(seed): 0.448 Positive Predictive Value Carnac(20): 0.917 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 IPknot vs RSpredict(seed) Matthews Correlation Coefficient IPknot: 0.574 RSpredict(seed): 0.532 Sensitivity IPknot: 0.500 RSpredict(seed): 0.447 Positive Predictive Value IPknot: 0.660 RSpredict(seed): 0.632 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	56 RSpredict(seed) vs CentroidFold Matthews Correlation Coefficient RSpredict(seed): 0.542 CentroidFold: 0.523 Sensitivity RSpredict(seed): 0.456 CentroidFold: 0.453 Positive Predictive Value RSpredict(seed): 0.645 CentroidFold: 0.604 Number of pairs reference - predicted secondary structure: 56 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs Contrafold Matthews Correlation Coefficient RSpredict(seed): 0.532 Contrafold: 0.508 Sensitivity RSpredict(seed): 0.447 Contrafold: 0.485 Positive Predictive Value RSpredict(seed): 0.632 Contrafold: 0.532 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08		- RSpredict(20) vs RSpredict(seed) Matthews Correlation Coefficient RSpredict(20): 0.586 RSpredict(seed): 0.529 Sensitivity RSpredict(20): 0.527 RSpredict(seed): 0.448 Positive Predictive Value RSpredict(20): 0.652 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs Sfold Matthews Correlation Coefficient RSpredict(seed): 0.532 Sfold: 0.480 Sensitivity RSpredict(seed): 0.447 Sfold: 0.423 Positive Predictive Value RSpredict(seed): 0.632 Sfold: 0.544 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs MaxExpect Matthews Correlation Coefficient RSpredict(seed): 0.532 MaxExpect: 0.436 Sensitivity RSpredict(seed): 0.447 MaxExpect: 0.424 Positive Predictive Value RSpredict(seed): 0.632 MaxExpect: 0.449 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs ProbKnot Matthews Correlation Coefficient RSpredict(seed): 0.532 ProbKnot: 0.430 Sensitivity RSpredict(seed): 0.447 ProbKnot: 0.422 Positive Predictive Value RSpredict(seed): 0.632 ProbKnot: 0.439 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs UNAFold Matthews Correlation Coefficient RSpredict(seed): 0.532 UNAFold: 0.448 Sensitivity RSpredict(seed): 0.447 UNAFold: 0.442 Positive Predictive Value RSpredict(seed): 0.632 UNAFold: 0.454 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs CRWrnafold Matthews Correlation Coefficient RSpredict(seed): 0.624 CRWrnafold: 0.525 Sensitivity RSpredict(seed): 0.531 CRWrnafold: 0.518 Positive Predictive Value RSpredict(seed): 0.733 CRWrnafold: 0.532 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.10776592382e-08	+ RSpredict(seed) vs Afold Matthews Correlation Coefficient RSpredict(seed): 0.539 Afold: 0.442 Sensitivity RSpredict(seed): 0.453 Afold: 0.437 Positive Predictive Value RSpredict(seed): 0.641 Afold: 0.448 Number of pairs reference - predicted secondary structure: 55 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs Fold Matthews Correlation Coefficient RSpredict(seed): 0.532 Fold: 0.407 Sensitivity RSpredict(seed): 0.447 Fold: 0.409 Positive Predictive Value RSpredict(seed): 0.632 Fold: 0.406 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs RNAfold Matthews Correlation Coefficient RSpredict(seed): 0.532 RNAfold: 0.419 Sensitivity RSpredict(seed): 0.447 RNAfold: 0.417 Positive Predictive Value RSpredict(seed): 0.632 RNAfold: 0.422 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(seed) vs PknotsRG Matthews Correlation Coefficient RSpredict(seed): 0.631 PknotsRG: 0.439 Sensitivity RSpredict(seed): 0.541 PknotsRG: 0.434 Positive Predictive Value RSpredict(seed): 0.737 PknotsRG: 0.445 Number of pairs reference - predicted secondary structure: 45 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs RSpredict(seed) Matthews Correlation Coefficient Murlet(seed): 0.642 RSpredict(seed): 0.525 Sensitivity Murlet(seed): 0.606 RSpredict(seed): 0.408 Positive Predictive Value Murlet(seed): 0.681 RSpredict(seed): 0.676 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RSpredict(seed) vs McQFold Matthews Correlation Coefficient RSpredict(seed): N/A McQFold: N/A Sensitivity RSpredict(seed): N/A McQFold: N/A Positive Predictive Value RSpredict(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RSpredict(seed) Matthews Correlation Coefficient NanoFolder: N/A RSpredict(seed): N/A Sensitivity NanoFolder: N/A RSpredict(seed): N/A Positive Predictive Value NanoFolder: N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs CMfinder(seed) Matthews Correlation Coefficient RSpredict(seed): N/A CMfinder(seed): N/A Sensitivity RSpredict(seed): N/A CMfinder(seed): N/A Positive Predictive Value RSpredict(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs RNAshapes Matthews Correlation Coefficient RSpredict(seed): N/A RNAshapes: N/A Sensitivity RSpredict(seed): N/A RNAshapes: N/A Positive Predictive Value RSpredict(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Multilign(seed) Matthews Correlation Coefficient RSpredict(seed): N/A Multilign(seed): N/A Sensitivity RSpredict(seed): N/A Multilign(seed): N/A Positive Predictive Value RSpredict(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Multilign(20) Matthews Correlation Coefficient RSpredict(seed): N/A Multilign(20): N/A Sensitivity RSpredict(seed): N/A Multilign(20): N/A Positive Predictive Value RSpredict(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs TurboFold(20) Matthews Correlation Coefficient RSpredict(seed): N/A TurboFold(20): N/A Sensitivity RSpredict(seed): N/A TurboFold(20): N/A Positive Predictive Value RSpredict(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs RSpredict(seed) Matthews Correlation Coefficient Mastr(seed): 0.000 RSpredict(seed): 0.000 Sensitivity Mastr(seed): 0.000 RSpredict(seed): 0.000 Positive Predictive Value Mastr(seed): 0.000 RSpredict(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? RSpredict(seed) vs RNAsubopt Matthews Correlation Coefficient RSpredict(seed): N/A RNAsubopt: N/A Sensitivity RSpredict(seed): N/A RNAsubopt: N/A Positive Predictive Value RSpredict(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs HotKnots Matthews Correlation Coefficient RSpredict(seed): N/A HotKnots: N/A Sensitivity RSpredict(seed): N/A HotKnots: N/A Positive Predictive Value RSpredict(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Pknots Matthews Correlation Coefficient RSpredict(seed): N/A Pknots: N/A Sensitivity RSpredict(seed): N/A Pknots: N/A Positive Predictive Value RSpredict(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Cylofold Matthews Correlation Coefficient RSpredict(seed): N/A Cylofold: N/A Sensitivity RSpredict(seed): N/A Cylofold: N/A Positive Predictive Value RSpredict(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs MCFold Matthews Correlation Coefficient RSpredict(seed): N/A MCFold: N/A Sensitivity RSpredict(seed): N/A MCFold: N/A Positive Predictive Value RSpredict(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Vsfold5 Matthews Correlation Coefficient RSpredict(seed): N/A Vsfold5: N/A Sensitivity RSpredict(seed): N/A Vsfold5: N/A Positive Predictive Value RSpredict(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Vsfold4 Matthews Correlation Coefficient RSpredict(seed): N/A Vsfold4: N/A Sensitivity RSpredict(seed): N/A Vsfold4: N/A Positive Predictive Value RSpredict(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Carnac(seed) Matthews Correlation Coefficient RSpredict(seed): 0.778 Carnac(seed): 0.729 Sensitivity RSpredict(seed): 0.755 Carnac(seed): 0.570 Positive Predictive Value RSpredict(seed): 0.801 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs RSpredict(seed) Matthews Correlation Coefficient RNASampler(20): N/A RSpredict(seed): N/A Sensitivity RNASampler(20): N/A RSpredict(seed): N/A Positive Predictive Value RNASampler(20): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs CMfinder(20) Matthews Correlation Coefficient RSpredict(seed): N/A CMfinder(20): N/A Sensitivity RSpredict(seed): N/A CMfinder(20): N/A Positive Predictive Value RSpredict(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs PPfold(seed) Matthews Correlation Coefficient RSpredict(seed): N/A PPfold(seed): N/A Sensitivity RSpredict(seed): N/A PPfold(seed): N/A Positive Predictive Value RSpredict(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs RDfolder Matthews Correlation Coefficient RSpredict(seed): N/A RDfolder: N/A Sensitivity RSpredict(seed): N/A RDfolder: N/A Positive Predictive Value RSpredict(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RSpredict(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RSpredict(seed): N/A Sensitivity TurboFold(seed): N/A RSpredict(seed): N/A Positive Predictive Value TurboFold(seed): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RSpredict(seed) Matthews Correlation Coefficient RNASampler(seed): N/A RSpredict(seed): N/A Sensitivity RNASampler(seed): N/A RSpredict(seed): N/A Positive Predictive Value RNASampler(seed): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs RNASLOpt Matthews Correlation Coefficient RSpredict(seed): N/A RNASLOpt: N/A Sensitivity RSpredict(seed): N/A RNASLOpt: N/A Positive Predictive Value RSpredict(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs RSpredict(seed) Matthews Correlation Coefficient Murlet(20): 0.636 RSpredict(seed): 0.466 Sensitivity Murlet(20): 0.564 RSpredict(seed): 0.389 Positive Predictive Value Murlet(20): 0.717 RSpredict(seed): 0.558 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? RSpredict(seed) vs Alterna Matthews Correlation Coefficient RSpredict(seed): N/A Alterna: N/A Sensitivity RSpredict(seed): N/A Alterna: N/A Positive Predictive Value RSpredict(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RSpredict(seed) Matthews Correlation Coefficient PPfold(20): 0.820 RSpredict(seed): 0.633 Sensitivity PPfold(20): 0.766 RSpredict(seed): 0.540 Positive Predictive Value PPfold(20): 0.879 RSpredict(seed): 0.743 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	? RSpredict(seed) vs RNAwolf Matthews Correlation Coefficient RSpredict(seed): N/A RNAwolf: N/A Sensitivity RSpredict(seed): N/A RNAwolf: N/A Positive Predictive Value RSpredict(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(seed) vs Mastr(20) Matthews Correlation Coefficient RSpredict(seed): 0.000 Mastr(20): 0.000 Sensitivity RSpredict(seed): 0.000 Mastr(20): 0.000 Positive Predictive Value RSpredict(seed): 0.000 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0
RSpredict(20)	77 PETfold_pre2.0(seed) vs RSpredict(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.760 RSpredict(20): 0.464 Sensitivity PETfold_pre2.0(seed): 0.730 RSpredict(20): 0.417 Positive Predictive Value PETfold_pre2.0(seed): 0.792 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 ContextFold vs RSpredict(20) Matthews Correlation Coefficient ContextFold: 0.725 RSpredict(20): 0.464 Sensitivity ContextFold: 0.688 RSpredict(20): 0.417 Positive Predictive Value ContextFold: 0.765 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 CentroidAlifold(seed) vs RSpredict(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.799 RSpredict(20): 0.591 Sensitivity CentroidAlifold(seed): 0.708 RSpredict(20): 0.530 Positive Predictive Value CentroidAlifold(seed): 0.901 RSpredict(20): 0.659 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs RSpredict(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RSpredict(20): 0.464 Sensitivity PETfold_pre2.0(20): 0.697 RSpredict(20): 0.417 Positive Predictive Value PETfold_pre2.0(20): 0.760 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs RSpredict(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RSpredict(20): 0.464 Sensitivity CentroidAlifold(20): 0.614 RSpredict(20): 0.417 Positive Predictive Value CentroidAlifold(20): 0.860 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	62 RNAalifold(seed) vs RSpredict(20) Matthews Correlation Coefficient RNAalifold(seed): 0.743 RSpredict(20): 0.558 Sensitivity RNAalifold(seed): 0.677 RSpredict(20): 0.500 Positive Predictive Value RNAalifold(seed): 0.817 RSpredict(20): 0.622 Number of pairs reference - predicted secondary structure: 62 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs RSpredict(20) Matthews Correlation Coefficient RNAalifold(20): 0.674 RSpredict(20): 0.464 Sensitivity RNAalifold(20): 0.621 RSpredict(20): 0.417 Positive Predictive Value RNAalifold(20): 0.732 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	58 MXScarna(seed) vs RSpredict(20) Matthews Correlation Coefficient MXScarna(seed): 0.665 RSpredict(20): 0.591 Sensitivity MXScarna(seed): 0.595 RSpredict(20): 0.530 Positive Predictive Value MXScarna(seed): 0.743 RSpredict(20): 0.659 Number of pairs reference - predicted secondary structure: 58 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs RSpredict(20) Matthews Correlation Coefficient MXScarna(20): 0.598 RSpredict(20): 0.464 Sensitivity MXScarna(20): 0.548 RSpredict(20): 0.417 Positive Predictive Value MXScarna(20): 0.653 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs RSpredict(20) Matthews Correlation Coefficient Carnac(20): 0.558 RSpredict(20): 0.464 Sensitivity Carnac(20): 0.348 RSpredict(20): 0.417 Positive Predictive Value Carnac(20): 0.895 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 IPknot vs RSpredict(20) Matthews Correlation Coefficient IPknot: 0.534 RSpredict(20): 0.464 Sensitivity IPknot: 0.471 RSpredict(20): 0.417 Positive Predictive Value IPknot: 0.607 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	76 CentroidFold vs RSpredict(20) Matthews Correlation Coefficient CentroidFold: 0.492 RSpredict(20): 0.470 Sensitivity CentroidFold: 0.430 RSpredict(20): 0.423 Positive Predictive Value CentroidFold: 0.563 RSpredict(20): 0.523 Number of pairs reference - predicted secondary structure: 76 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Contrafold vs RSpredict(20) Matthews Correlation Coefficient Contrafold: 0.477 RSpredict(20): 0.464 Sensitivity Contrafold: 0.461 RSpredict(20): 0.417 Positive Predictive Value Contrafold: 0.494 RSpredict(20): 0.516 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 8.81311508309e-08	52 RSpredict(20) vs RSpredict(seed) Matthews Correlation Coefficient RSpredict(20): 0.586 RSpredict(seed): 0.529 Sensitivity RSpredict(20): 0.527 RSpredict(seed): 0.448 Positive Predictive Value RSpredict(20): 0.652 RSpredict(seed): 0.626 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ RSpredict(20) vs Sfold Matthews Correlation Coefficient RSpredict(20): 0.464 Sfold: 0.453 Sensitivity RSpredict(20): 0.417 Sfold: 0.403 Positive Predictive Value RSpredict(20): 0.516 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 1.70738736246e-07	+ RSpredict(20) vs MaxExpect Matthews Correlation Coefficient RSpredict(20): 0.464 MaxExpect: 0.415 Sensitivity RSpredict(20): 0.417 MaxExpect: 0.406 Positive Predictive Value RSpredict(20): 0.516 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs ProbKnot Matthews Correlation Coefficient RSpredict(20): 0.464 ProbKnot: 0.408 Sensitivity RSpredict(20): 0.417 ProbKnot: 0.403 Positive Predictive Value RSpredict(20): 0.516 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs UNAFold Matthews Correlation Coefficient RSpredict(20): 0.464 UNAFold: 0.417 Sensitivity RSpredict(20): 0.417 UNAFold: 0.416 Positive Predictive Value RSpredict(20): 0.516 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs CRWrnafold Matthews Correlation Coefficient RSpredict(20): 0.677 CRWrnafold: 0.537 Sensitivity RSpredict(20): 0.609 CRWrnafold: 0.529 Positive Predictive Value RSpredict(20): 0.752 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.02343278931e-08	+ RSpredict(20) vs Afold Matthews Correlation Coefficient RSpredict(20): 0.461 Afold: 0.410 Sensitivity RSpredict(20): 0.415 Afold: 0.410 Positive Predictive Value RSpredict(20): 0.513 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs Fold Matthews Correlation Coefficient RSpredict(20): 0.464 Fold: 0.385 Sensitivity RSpredict(20): 0.417 Fold: 0.390 Positive Predictive Value RSpredict(20): 0.516 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs RNAfold Matthews Correlation Coefficient RSpredict(20): 0.464 RNAfold: 0.396 Sensitivity RSpredict(20): 0.417 RNAfold: 0.398 Positive Predictive Value RSpredict(20): 0.516 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RSpredict(20) vs PknotsRG Matthews Correlation Coefficient RSpredict(20): 0.686 PknotsRG: 0.450 Sensitivity RSpredict(20): 0.621 PknotsRG: 0.444 Positive Predictive Value RSpredict(20): 0.759 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	? RSpredict(20) vs Murlet(seed) Matthews Correlation Coefficient RSpredict(20): N/A Murlet(seed): N/A Sensitivity RSpredict(20): N/A Murlet(seed): N/A Positive Predictive Value RSpredict(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs McQFold Matthews Correlation Coefficient RSpredict(20): N/A McQFold: N/A Sensitivity RSpredict(20): N/A McQFold: N/A Positive Predictive Value RSpredict(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RSpredict(20) Matthews Correlation Coefficient NanoFolder: N/A RSpredict(20): N/A Sensitivity NanoFolder: N/A RSpredict(20): N/A Positive Predictive Value NanoFolder: N/A RSpredict(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RSpredict(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RSpredict(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RSpredict(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs CMfinder(seed) Matthews Correlation Coefficient RSpredict(20): N/A CMfinder(seed): N/A Sensitivity RSpredict(20): N/A CMfinder(seed): N/A Positive Predictive Value RSpredict(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs RNAshapes Matthews Correlation Coefficient RSpredict(20): N/A RNAshapes: N/A Sensitivity RSpredict(20): N/A RNAshapes: N/A Positive Predictive Value RSpredict(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Multilign(seed) Matthews Correlation Coefficient RSpredict(20): N/A Multilign(seed): N/A Sensitivity RSpredict(20): N/A Multilign(seed): N/A Positive Predictive Value RSpredict(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Multilign(20) Matthews Correlation Coefficient RSpredict(20): N/A Multilign(20): N/A Sensitivity RSpredict(20): N/A Multilign(20): N/A Positive Predictive Value RSpredict(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs TurboFold(20) Matthews Correlation Coefficient RSpredict(20): N/A TurboFold(20): N/A Sensitivity RSpredict(20): N/A TurboFold(20): N/A Positive Predictive Value RSpredict(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Mastr(seed) Matthews Correlation Coefficient RSpredict(20): 0.175 Mastr(seed): 0.000 Sensitivity RSpredict(20): 0.159 Mastr(seed): 0.000 Positive Predictive Value RSpredict(20): 0.194 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? RSpredict(20) vs RNAsubopt Matthews Correlation Coefficient RSpredict(20): N/A RNAsubopt: N/A Sensitivity RSpredict(20): N/A RNAsubopt: N/A Positive Predictive Value RSpredict(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs HotKnots Matthews Correlation Coefficient RSpredict(20): N/A HotKnots: N/A Sensitivity RSpredict(20): N/A HotKnots: N/A Positive Predictive Value RSpredict(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Pknots Matthews Correlation Coefficient RSpredict(20): N/A Pknots: N/A Sensitivity RSpredict(20): N/A Pknots: N/A Positive Predictive Value RSpredict(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Cylofold Matthews Correlation Coefficient RSpredict(20): N/A Cylofold: N/A Sensitivity RSpredict(20): N/A Cylofold: N/A Positive Predictive Value RSpredict(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs MCFold Matthews Correlation Coefficient RSpredict(20): N/A MCFold: N/A Sensitivity RSpredict(20): N/A MCFold: N/A Positive Predictive Value RSpredict(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Vsfold5 Matthews Correlation Coefficient RSpredict(20): N/A Vsfold5: N/A Sensitivity RSpredict(20): N/A Vsfold5: N/A Positive Predictive Value RSpredict(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Vsfold4 Matthews Correlation Coefficient RSpredict(20): N/A Vsfold4: N/A Sensitivity RSpredict(20): N/A Vsfold4: N/A Positive Predictive Value RSpredict(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs Carnac(seed) Matthews Correlation Coefficient RSpredict(20): 0.782 Carnac(seed): 0.729 Sensitivity RSpredict(20): 0.762 Carnac(seed): 0.570 Positive Predictive Value RSpredict(20): 0.802 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs RSpredict(20) Matthews Correlation Coefficient RNASampler(20): N/A RSpredict(20): N/A Sensitivity RNASampler(20): N/A RSpredict(20): N/A Positive Predictive Value RNASampler(20): N/A RSpredict(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs CMfinder(20) Matthews Correlation Coefficient RSpredict(20): N/A CMfinder(20): N/A Sensitivity RSpredict(20): N/A CMfinder(20): N/A Positive Predictive Value RSpredict(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs PPfold(seed) Matthews Correlation Coefficient RSpredict(20): N/A PPfold(seed): N/A Sensitivity RSpredict(20): N/A PPfold(seed): N/A Positive Predictive Value RSpredict(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs RDfolder Matthews Correlation Coefficient RSpredict(20): N/A RDfolder: N/A Sensitivity RSpredict(20): N/A RDfolder: N/A Positive Predictive Value RSpredict(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs TurboFold(seed) Matthews Correlation Coefficient RSpredict(20): N/A TurboFold(seed): N/A Sensitivity RSpredict(20): N/A TurboFold(seed): N/A Positive Predictive Value RSpredict(20): N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs RNASampler(seed) Matthews Correlation Coefficient RSpredict(20): N/A RNASampler(seed): N/A Sensitivity RSpredict(20): N/A RNASampler(seed): N/A Positive Predictive Value RSpredict(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RSpredict(20) vs RNASLOpt Matthews Correlation Coefficient RSpredict(20): N/A RNASLOpt: N/A Sensitivity RSpredict(20): N/A RNASLOpt: N/A Positive Predictive Value RSpredict(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs RSpredict(20) Matthews Correlation Coefficient Murlet(20): 0.621 RSpredict(20): 0.469 Sensitivity Murlet(20): 0.544 RSpredict(20): 0.417 Positive Predictive Value Murlet(20): 0.708 RSpredict(20): 0.527 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? RSpredict(20) vs Alterna Matthews Correlation Coefficient RSpredict(20): N/A Alterna: N/A Sensitivity RSpredict(20): N/A Alterna: N/A Positive Predictive Value RSpredict(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RSpredict(20) Matthews Correlation Coefficient PPfold(20): 0.746 RSpredict(20): 0.504 Sensitivity PPfold(20): 0.681 RSpredict(20): 0.450 Positive Predictive Value PPfold(20): 0.818 RSpredict(20): 0.565 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? RSpredict(20) vs RNAwolf Matthews Correlation Coefficient RSpredict(20): N/A RNAwolf: N/A Sensitivity RSpredict(20): N/A RNAwolf: N/A Positive Predictive Value RSpredict(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	+ RSpredict(20) vs Mastr(20) Matthews Correlation Coefficient RSpredict(20): 0.115 Mastr(20): 0.000 Sensitivity RSpredict(20): 0.104 Mastr(20): 0.000 Positive Predictive Value RSpredict(20): 0.128 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08
Sfold	83 PETfold_pre2.0(seed) vs Sfold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Sfold: 0.449 Sensitivity PETfold_pre2.0(seed): 0.731 Sfold: 0.397 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Sfold: 0.508 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs Sfold Matthews Correlation Coefficient ContextFold: 0.644 Sfold: 0.414 Sensitivity ContextFold: 0.605 Sfold: 0.366 Positive Predictive Value ContextFold: 0.686 Sfold: 0.469 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs Sfold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Sfold: 0.487 Sensitivity CentroidAlifold(seed): 0.706 Sfold: 0.429 Positive Predictive Value CentroidAlifold(seed): 0.897 Sfold: 0.553 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs Sfold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Sfold: 0.453 Sensitivity PETfold_pre2.0(20): 0.697 Sfold: 0.403 Positive Predictive Value PETfold_pre2.0(20): 0.760 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs Sfold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Sfold: 0.453 Sensitivity CentroidAlifold(20): 0.614 Sfold: 0.403 Positive Predictive Value CentroidAlifold(20): 0.860 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs Sfold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Sfold: 0.480 Sensitivity RNAalifold(seed): 0.678 Sfold: 0.422 Positive Predictive Value RNAalifold(seed): 0.818 Sfold: 0.545 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs Sfold Matthews Correlation Coefficient RNAalifold(20): 0.674 Sfold: 0.453 Sensitivity RNAalifold(20): 0.621 Sfold: 0.403 Positive Predictive Value RNAalifold(20): 0.732 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs Sfold Matthews Correlation Coefficient MXScarna(seed): 0.659 Sfold: 0.487 Sensitivity MXScarna(seed): 0.589 Sfold: 0.429 Positive Predictive Value MXScarna(seed): 0.738 Sfold: 0.553 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs Sfold Matthews Correlation Coefficient MXScarna(20): 0.598 Sfold: 0.453 Sensitivity MXScarna(20): 0.548 Sfold: 0.403 Positive Predictive Value MXScarna(20): 0.653 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs Sfold Matthews Correlation Coefficient Carnac(20): 0.558 Sfold: 0.453 Sensitivity Carnac(20): 0.348 Sfold: 0.403 Positive Predictive Value Carnac(20): 0.895 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs Sfold Matthews Correlation Coefficient IPknot: 0.501 Sfold: 0.416 Sensitivity IPknot: 0.431 Sfold: 0.367 Positive Predictive Value IPknot: 0.583 Sfold: 0.471 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs Sfold Matthews Correlation Coefficient CentroidFold: 0.445 Sfold: 0.397 Sensitivity CentroidFold: 0.378 Sfold: 0.349 Positive Predictive Value CentroidFold: 0.525 Sfold: 0.452 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs Sfold Matthews Correlation Coefficient Contrafold: 0.466 Sfold: 0.414 Sensitivity Contrafold: 0.447 Sfold: 0.366 Positive Predictive Value Contrafold: 0.487 Sfold: 0.469 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs Sfold Matthews Correlation Coefficient RSpredict(seed): 0.532 Sfold: 0.480 Sensitivity RSpredict(seed): 0.447 Sfold: 0.423 Positive Predictive Value RSpredict(seed): 0.632 Sfold: 0.544 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs Sfold Matthews Correlation Coefficient RSpredict(20): 0.464 Sfold: 0.453 Sensitivity RSpredict(20): 0.417 Sfold: 0.403 Positive Predictive Value RSpredict(20): 0.516 Sfold: 0.510 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 1.70738736246e-07		+ Sfold vs MaxExpect Matthews Correlation Coefficient Sfold: 0.414 MaxExpect: 0.407 Sensitivity Sfold: 0.366 MaxExpect: 0.396 Positive Predictive Value Sfold: 0.469 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs ProbKnot Matthews Correlation Coefficient Sfold: 0.414 ProbKnot: 0.400 Sensitivity Sfold: 0.366 ProbKnot: 0.396 Positive Predictive Value Sfold: 0.469 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs UNAFold Matthews Correlation Coefficient Sfold: 0.414 UNAFold: 0.379 Sensitivity Sfold: 0.366 UNAFold: 0.379 Positive Predictive Value Sfold: 0.469 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs CRWrnafold Matthews Correlation Coefficient Sfold: 0.397 CRWrnafold: 0.356 Sensitivity Sfold: 0.343 CRWrnafold: 0.359 Positive Predictive Value Sfold: 0.459 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs Afold Matthews Correlation Coefficient Sfold: 0.409 Afold: 0.371 Sensitivity Sfold: 0.359 Afold: 0.371 Positive Predictive Value Sfold: 0.467 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs Fold Matthews Correlation Coefficient Sfold: 0.414 Fold: 0.375 Sensitivity Sfold: 0.366 Fold: 0.381 Positive Predictive Value Sfold: 0.469 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs RNAfold Matthews Correlation Coefficient Sfold: 0.414 RNAfold: 0.369 Sensitivity Sfold: 0.366 RNAfold: 0.373 Positive Predictive Value Sfold: 0.469 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs PknotsRG Matthews Correlation Coefficient Sfold: 0.419 PknotsRG: 0.363 Sensitivity Sfold: 0.367 PknotsRG: 0.363 Positive Predictive Value Sfold: 0.481 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs Sfold Matthews Correlation Coefficient Murlet(seed): 0.642 Sfold: 0.372 Sensitivity Murlet(seed): 0.606 Sfold: 0.339 Positive Predictive Value Murlet(seed): 0.681 Sfold: 0.408 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Sfold vs McQFold Matthews Correlation Coefficient Sfold: 0.401 McQFold: 0.301 Sensitivity Sfold: 0.363 McQFold: 0.283 Positive Predictive Value Sfold: 0.443 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs Sfold Matthews Correlation Coefficient NanoFolder: N/A Sfold: N/A Sensitivity NanoFolder: N/A Sfold: N/A Positive Predictive Value NanoFolder: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs Sfold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Sfold: N/A Sensitivity CentroidHomfold‑LAST: N/A Sfold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Sfold Matthews Correlation Coefficient CMfinder(seed): N/A Sfold: N/A Sensitivity CMfinder(seed): N/A Sfold: N/A Positive Predictive Value CMfinder(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs Sfold Matthews Correlation Coefficient RNAshapes: N/A Sfold: N/A Sensitivity RNAshapes: N/A Sfold: N/A Positive Predictive Value RNAshapes: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Sfold Matthews Correlation Coefficient Multilign(seed): N/A Sfold: N/A Sensitivity Multilign(seed): N/A Sfold: N/A Positive Predictive Value Multilign(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs Multilign(20) Matthews Correlation Coefficient Sfold: N/A Multilign(20): N/A Sensitivity Sfold: N/A Multilign(20): N/A Positive Predictive Value Sfold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Sfold Matthews Correlation Coefficient TurboFold(20): N/A Sfold: N/A Sensitivity TurboFold(20): N/A Sfold: N/A Positive Predictive Value TurboFold(20): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs Mastr(seed) Matthews Correlation Coefficient Sfold: 0.391 Mastr(seed): 0.000 Sensitivity Sfold: 0.332 Mastr(seed): 0.000 Positive Predictive Value Sfold: 0.462 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? RNAsubopt vs Sfold Matthews Correlation Coefficient RNAsubopt: N/A Sfold: N/A Sensitivity RNAsubopt: N/A Sfold: N/A Positive Predictive Value RNAsubopt: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Sfold Matthews Correlation Coefficient HotKnots: N/A Sfold: N/A Sensitivity HotKnots: N/A Sfold: N/A Positive Predictive Value HotKnots: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Sfold Matthews Correlation Coefficient Pknots: N/A Sfold: N/A Sensitivity Pknots: N/A Sfold: N/A Positive Predictive Value Pknots: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Sfold Matthews Correlation Coefficient Cylofold: N/A Sfold: N/A Sensitivity Cylofold: N/A Sfold: N/A Positive Predictive Value Cylofold: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs MCFold Matthews Correlation Coefficient Sfold: N/A MCFold: N/A Sensitivity Sfold: N/A MCFold: N/A Positive Predictive Value Sfold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Sfold Matthews Correlation Coefficient Vsfold5: N/A Sfold: N/A Sensitivity Vsfold5: N/A Sfold: N/A Positive Predictive Value Vsfold5: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Sfold Matthews Correlation Coefficient Vsfold4: N/A Sfold: N/A Sensitivity Vsfold4: N/A Sfold: N/A Positive Predictive Value Vsfold4: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs Carnac(seed) Matthews Correlation Coefficient Sfold: 0.798 Carnac(seed): 0.729 Sensitivity Sfold: 0.769 Carnac(seed): 0.570 Positive Predictive Value Sfold: 0.828 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs Sfold Matthews Correlation Coefficient RNASampler(20): N/A Sfold: N/A Sensitivity RNASampler(20): N/A Sfold: N/A Positive Predictive Value RNASampler(20): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs CMfinder(20) Matthews Correlation Coefficient Sfold: N/A CMfinder(20): N/A Sensitivity Sfold: N/A CMfinder(20): N/A Positive Predictive Value Sfold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Sfold Matthews Correlation Coefficient PPfold(seed): N/A Sfold: N/A Sensitivity PPfold(seed): N/A Sfold: N/A Positive Predictive Value PPfold(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Sfold Matthews Correlation Coefficient RDfolder: N/A Sfold: N/A Sensitivity RDfolder: N/A Sfold: N/A Positive Predictive Value RDfolder: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Sfold Matthews Correlation Coefficient TurboFold(seed): N/A Sfold: N/A Sensitivity TurboFold(seed): N/A Sfold: N/A Positive Predictive Value TurboFold(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Sfold Matthews Correlation Coefficient RNASampler(seed): N/A Sfold: N/A Sensitivity RNASampler(seed): N/A Sfold: N/A Positive Predictive Value RNASampler(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Sfold vs RNASLOpt Matthews Correlation Coefficient Sfold: 0.383 RNASLOpt: 0.000 Sensitivity Sfold: 0.308 RNASLOpt: 0.000 Positive Predictive Value Sfold: 0.476 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs Sfold Matthews Correlation Coefficient Murlet(20): 0.621 Sfold: 0.458 Sensitivity Murlet(20): 0.544 Sfold: 0.395 Positive Predictive Value Murlet(20): 0.708 Sfold: 0.530 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs Sfold Matthews Correlation Coefficient Alterna: N/A Sfold: N/A Sensitivity Alterna: N/A Sfold: N/A Positive Predictive Value Alterna: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Sfold Matthews Correlation Coefficient PPfold(20): 0.746 Sfold: 0.480 Sensitivity PPfold(20): 0.681 Sfold: 0.397 Positive Predictive Value PPfold(20): 0.818 Sfold: 0.580 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ Sfold vs RNAwolf Matthews Correlation Coefficient Sfold: 0.374 RNAwolf: 0.199 Sensitivity Sfold: 0.321 RNAwolf: 0.212 Positive Predictive Value Sfold: 0.436 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Sfold vs Mastr(20) Matthews Correlation Coefficient Sfold: 0.333 Mastr(20): 0.000 Sensitivity Sfold: 0.297 Mastr(20): 0.000 Positive Predictive Value Sfold: 0.375 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08
MaxExpect	83 PETfold_pre2.0(seed) vs MaxExpect Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 MaxExpect: 0.411 Sensitivity PETfold_pre2.0(seed): 0.731 MaxExpect: 0.402 Positive Predictive Value PETfold_pre2.0(seed): 0.793 MaxExpect: 0.420 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs MaxExpect Matthews Correlation Coefficient ContextFold: 0.644 MaxExpect: 0.407 Sensitivity ContextFold: 0.605 MaxExpect: 0.396 Positive Predictive Value ContextFold: 0.686 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs MaxExpect Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 MaxExpect: 0.440 Sensitivity CentroidAlifold(seed): 0.706 MaxExpect: 0.428 Positive Predictive Value CentroidAlifold(seed): 0.897 MaxExpect: 0.454 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs MaxExpect Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 MaxExpect: 0.415 Sensitivity PETfold_pre2.0(20): 0.697 MaxExpect: 0.406 Positive Predictive Value PETfold_pre2.0(20): 0.760 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs MaxExpect Matthews Correlation Coefficient CentroidAlifold(20): 0.726 MaxExpect: 0.415 Sensitivity CentroidAlifold(20): 0.614 MaxExpect: 0.406 Positive Predictive Value CentroidAlifold(20): 0.860 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs MaxExpect Matthews Correlation Coefficient RNAalifold(seed): 0.744 MaxExpect: 0.434 Sensitivity RNAalifold(seed): 0.678 MaxExpect: 0.422 Positive Predictive Value RNAalifold(seed): 0.818 MaxExpect: 0.446 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs MaxExpect Matthews Correlation Coefficient RNAalifold(20): 0.674 MaxExpect: 0.415 Sensitivity RNAalifold(20): 0.621 MaxExpect: 0.406 Positive Predictive Value RNAalifold(20): 0.732 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs MaxExpect Matthews Correlation Coefficient MXScarna(seed): 0.659 MaxExpect: 0.440 Sensitivity MXScarna(seed): 0.589 MaxExpect: 0.428 Positive Predictive Value MXScarna(seed): 0.738 MaxExpect: 0.454 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs MaxExpect Matthews Correlation Coefficient MXScarna(20): 0.598 MaxExpect: 0.415 Sensitivity MXScarna(20): 0.548 MaxExpect: 0.406 Positive Predictive Value MXScarna(20): 0.653 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs MaxExpect Matthews Correlation Coefficient Carnac(20): 0.558 MaxExpect: 0.415 Sensitivity Carnac(20): 0.348 MaxExpect: 0.406 Positive Predictive Value Carnac(20): 0.895 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs MaxExpect Matthews Correlation Coefficient IPknot: 0.501 MaxExpect: 0.408 Sensitivity IPknot: 0.431 MaxExpect: 0.397 Positive Predictive Value IPknot: 0.583 MaxExpect: 0.420 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs MaxExpect Matthews Correlation Coefficient CentroidFold: 0.445 MaxExpect: 0.379 Sensitivity CentroidFold: 0.378 MaxExpect: 0.368 Positive Predictive Value CentroidFold: 0.525 MaxExpect: 0.391 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs MaxExpect Matthews Correlation Coefficient Contrafold: 0.466 MaxExpect: 0.407 Sensitivity Contrafold: 0.447 MaxExpect: 0.396 Positive Predictive Value Contrafold: 0.487 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs MaxExpect Matthews Correlation Coefficient RSpredict(seed): 0.532 MaxExpect: 0.436 Sensitivity RSpredict(seed): 0.447 MaxExpect: 0.424 Positive Predictive Value RSpredict(seed): 0.632 MaxExpect: 0.449 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs MaxExpect Matthews Correlation Coefficient RSpredict(20): 0.464 MaxExpect: 0.415 Sensitivity RSpredict(20): 0.417 MaxExpect: 0.406 Positive Predictive Value RSpredict(20): 0.516 MaxExpect: 0.424 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Sfold vs MaxExpect Matthews Correlation Coefficient Sfold: 0.414 MaxExpect: 0.407 Sensitivity Sfold: 0.366 MaxExpect: 0.396 Positive Predictive Value Sfold: 0.469 MaxExpect: 0.418 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ MaxExpect vs ProbKnot Matthews Correlation Coefficient MaxExpect: 0.407 ProbKnot: 0.400 Sensitivity MaxExpect: 0.396 ProbKnot: 0.396 Positive Predictive Value MaxExpect: 0.418 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs UNAFold Matthews Correlation Coefficient MaxExpect: 0.407 UNAFold: 0.379 Sensitivity MaxExpect: 0.396 UNAFold: 0.379 Positive Predictive Value MaxExpect: 0.418 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs CRWrnafold Matthews Correlation Coefficient MaxExpect: 0.376 CRWrnafold: 0.356 Sensitivity MaxExpect: 0.360 CRWrnafold: 0.359 Positive Predictive Value MaxExpect: 0.394 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs Afold Matthews Correlation Coefficient MaxExpect: 0.398 Afold: 0.371 Sensitivity MaxExpect: 0.386 Afold: 0.371 Positive Predictive Value MaxExpect: 0.411 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs Fold Matthews Correlation Coefficient MaxExpect: 0.407 Fold: 0.375 Sensitivity MaxExpect: 0.396 Fold: 0.381 Positive Predictive Value MaxExpect: 0.418 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs RNAfold Matthews Correlation Coefficient MaxExpect: 0.407 RNAfold: 0.369 Sensitivity MaxExpect: 0.396 RNAfold: 0.373 Positive Predictive Value MaxExpect: 0.418 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs PknotsRG Matthews Correlation Coefficient MaxExpect: 0.397 PknotsRG: 0.363 Sensitivity MaxExpect: 0.382 PknotsRG: 0.363 Positive Predictive Value MaxExpect: 0.414 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs MaxExpect Matthews Correlation Coefficient Murlet(seed): 0.642 MaxExpect: 0.368 Sensitivity Murlet(seed): 0.606 MaxExpect: 0.355 Positive Predictive Value Murlet(seed): 0.681 MaxExpect: 0.382 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? MaxExpect vs McQFold Matthews Correlation Coefficient MaxExpect: 0.392 McQFold: 0.301 Sensitivity MaxExpect: 0.370 McQFold: 0.283 Positive Predictive Value MaxExpect: 0.417 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? MaxExpect vs NanoFolder Matthews Correlation Coefficient MaxExpect: N/A NanoFolder: N/A Sensitivity MaxExpect: N/A NanoFolder: N/A Positive Predictive Value MaxExpect: N/A NanoFolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs CentroidHomfold‑LAST Matthews Correlation Coefficient MaxExpect: N/A CentroidHomfold‑LAST: N/A Sensitivity MaxExpect: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value MaxExpect: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs CMfinder(seed) Matthews Correlation Coefficient MaxExpect: N/A CMfinder(seed): N/A Sensitivity MaxExpect: N/A CMfinder(seed): N/A Positive Predictive Value MaxExpect: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs RNAshapes Matthews Correlation Coefficient MaxExpect: N/A RNAshapes: N/A Sensitivity MaxExpect: N/A RNAshapes: N/A Positive Predictive Value MaxExpect: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Multilign(seed) Matthews Correlation Coefficient MaxExpect: N/A Multilign(seed): N/A Sensitivity MaxExpect: N/A Multilign(seed): N/A Positive Predictive Value MaxExpect: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Multilign(20) Matthews Correlation Coefficient MaxExpect: N/A Multilign(20): N/A Sensitivity MaxExpect: N/A Multilign(20): N/A Positive Predictive Value MaxExpect: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs TurboFold(20) Matthews Correlation Coefficient MaxExpect: N/A TurboFold(20): N/A Sensitivity MaxExpect: N/A TurboFold(20): N/A Positive Predictive Value MaxExpect: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Mastr(seed) Matthews Correlation Coefficient MaxExpect: 0.387 Mastr(seed): 0.000 Sensitivity MaxExpect: 0.381 Mastr(seed): 0.000 Positive Predictive Value MaxExpect: 0.393 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? MaxExpect vs RNAsubopt Matthews Correlation Coefficient MaxExpect: N/A RNAsubopt: N/A Sensitivity MaxExpect: N/A RNAsubopt: N/A Positive Predictive Value MaxExpect: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs HotKnots Matthews Correlation Coefficient MaxExpect: N/A HotKnots: N/A Sensitivity MaxExpect: N/A HotKnots: N/A Positive Predictive Value MaxExpect: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Pknots Matthews Correlation Coefficient MaxExpect: N/A Pknots: N/A Sensitivity MaxExpect: N/A Pknots: N/A Positive Predictive Value MaxExpect: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Cylofold Matthews Correlation Coefficient MaxExpect: N/A Cylofold: N/A Sensitivity MaxExpect: N/A Cylofold: N/A Positive Predictive Value MaxExpect: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs MCFold Matthews Correlation Coefficient MaxExpect: N/A MCFold: N/A Sensitivity MaxExpect: N/A MCFold: N/A Positive Predictive Value MaxExpect: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Vsfold5 Matthews Correlation Coefficient MaxExpect: N/A Vsfold5: N/A Sensitivity MaxExpect: N/A Vsfold5: N/A Positive Predictive Value MaxExpect: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs Vsfold4 Matthews Correlation Coefficient MaxExpect: N/A Vsfold4: N/A Sensitivity MaxExpect: N/A Vsfold4: N/A Positive Predictive Value MaxExpect: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs MaxExpect Matthews Correlation Coefficient Carnac(seed): 0.729 MaxExpect: 0.706 Sensitivity Carnac(seed): 0.570 MaxExpect: 0.699 Positive Predictive Value Carnac(seed): 0.932 MaxExpect: 0.713 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? MaxExpect vs RNASampler(20) Matthews Correlation Coefficient MaxExpect: N/A RNASampler(20): N/A Sensitivity MaxExpect: N/A RNASampler(20): N/A Positive Predictive Value MaxExpect: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs CMfinder(20) Matthews Correlation Coefficient MaxExpect: N/A CMfinder(20): N/A Sensitivity MaxExpect: N/A CMfinder(20): N/A Positive Predictive Value MaxExpect: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs PPfold(seed) Matthews Correlation Coefficient MaxExpect: N/A PPfold(seed): N/A Sensitivity MaxExpect: N/A PPfold(seed): N/A Positive Predictive Value MaxExpect: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs RDfolder Matthews Correlation Coefficient MaxExpect: N/A RDfolder: N/A Sensitivity MaxExpect: N/A RDfolder: N/A Positive Predictive Value MaxExpect: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs TurboFold(seed) Matthews Correlation Coefficient MaxExpect: N/A TurboFold(seed): N/A Sensitivity MaxExpect: N/A TurboFold(seed): N/A Positive Predictive Value MaxExpect: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs RNASampler(seed) Matthews Correlation Coefficient MaxExpect: N/A RNASampler(seed): N/A Sensitivity MaxExpect: N/A RNASampler(seed): N/A Positive Predictive Value MaxExpect: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MaxExpect vs RNASLOpt Matthews Correlation Coefficient MaxExpect: 0.291 RNASLOpt: 0.000 Sensitivity MaxExpect: 0.250 RNASLOpt: 0.000 Positive Predictive Value MaxExpect: 0.340 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs MaxExpect Matthews Correlation Coefficient Murlet(20): 0.621 MaxExpect: 0.404 Sensitivity Murlet(20): 0.544 MaxExpect: 0.396 Positive Predictive Value Murlet(20): 0.708 MaxExpect: 0.414 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? MaxExpect vs Alterna Matthews Correlation Coefficient MaxExpect: N/A Alterna: N/A Sensitivity MaxExpect: N/A Alterna: N/A Positive Predictive Value MaxExpect: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs MaxExpect Matthews Correlation Coefficient PPfold(20): 0.746 MaxExpect: 0.415 Sensitivity PPfold(20): 0.681 MaxExpect: 0.401 Positive Predictive Value PPfold(20): 0.818 MaxExpect: 0.429 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ MaxExpect vs RNAwolf Matthews Correlation Coefficient MaxExpect: 0.378 RNAwolf: 0.199 Sensitivity MaxExpect: 0.357 RNAwolf: 0.212 Positive Predictive Value MaxExpect: 0.401 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ MaxExpect vs Mastr(20) Matthews Correlation Coefficient MaxExpect: 0.320 Mastr(20): 0.000 Sensitivity MaxExpect: 0.320 Mastr(20): 0.000 Positive Predictive Value MaxExpect: 0.321 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
ProbKnot	83 PETfold_pre2.0(seed) vs ProbKnot Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 ProbKnot: 0.404 Sensitivity PETfold_pre2.0(seed): 0.731 ProbKnot: 0.399 Positive Predictive Value PETfold_pre2.0(seed): 0.793 ProbKnot: 0.409 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs ProbKnot Matthews Correlation Coefficient ContextFold: 0.644 ProbKnot: 0.400 Sensitivity ContextFold: 0.605 ProbKnot: 0.396 Positive Predictive Value ContextFold: 0.686 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs ProbKnot Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 ProbKnot: 0.434 Sensitivity CentroidAlifold(seed): 0.706 ProbKnot: 0.425 Positive Predictive Value CentroidAlifold(seed): 0.897 ProbKnot: 0.443 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs ProbKnot Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 ProbKnot: 0.408 Sensitivity PETfold_pre2.0(20): 0.697 ProbKnot: 0.403 Positive Predictive Value PETfold_pre2.0(20): 0.760 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs ProbKnot Matthews Correlation Coefficient CentroidAlifold(20): 0.726 ProbKnot: 0.408 Sensitivity CentroidAlifold(20): 0.614 ProbKnot: 0.403 Positive Predictive Value CentroidAlifold(20): 0.860 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs ProbKnot Matthews Correlation Coefficient RNAalifold(seed): 0.744 ProbKnot: 0.427 Sensitivity RNAalifold(seed): 0.678 ProbKnot: 0.419 Positive Predictive Value RNAalifold(seed): 0.818 ProbKnot: 0.435 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs ProbKnot Matthews Correlation Coefficient RNAalifold(20): 0.674 ProbKnot: 0.408 Sensitivity RNAalifold(20): 0.621 ProbKnot: 0.403 Positive Predictive Value RNAalifold(20): 0.732 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs ProbKnot Matthews Correlation Coefficient MXScarna(seed): 0.659 ProbKnot: 0.434 Sensitivity MXScarna(seed): 0.589 ProbKnot: 0.425 Positive Predictive Value MXScarna(seed): 0.738 ProbKnot: 0.443 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs ProbKnot Matthews Correlation Coefficient MXScarna(20): 0.598 ProbKnot: 0.408 Sensitivity MXScarna(20): 0.548 ProbKnot: 0.403 Positive Predictive Value MXScarna(20): 0.653 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs ProbKnot Matthews Correlation Coefficient Carnac(20): 0.558 ProbKnot: 0.408 Sensitivity Carnac(20): 0.348 ProbKnot: 0.403 Positive Predictive Value Carnac(20): 0.895 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs ProbKnot Matthews Correlation Coefficient IPknot: 0.501 ProbKnot: 0.401 Sensitivity IPknot: 0.431 ProbKnot: 0.397 Positive Predictive Value IPknot: 0.583 ProbKnot: 0.404 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs ProbKnot Matthews Correlation Coefficient CentroidFold: 0.445 ProbKnot: 0.372 Sensitivity CentroidFold: 0.378 ProbKnot: 0.369 Positive Predictive Value CentroidFold: 0.525 ProbKnot: 0.375 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs ProbKnot Matthews Correlation Coefficient Contrafold: 0.466 ProbKnot: 0.400 Sensitivity Contrafold: 0.447 ProbKnot: 0.396 Positive Predictive Value Contrafold: 0.487 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs ProbKnot Matthews Correlation Coefficient RSpredict(seed): 0.532 ProbKnot: 0.430 Sensitivity RSpredict(seed): 0.447 ProbKnot: 0.422 Positive Predictive Value RSpredict(seed): 0.632 ProbKnot: 0.439 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs ProbKnot Matthews Correlation Coefficient RSpredict(20): 0.464 ProbKnot: 0.408 Sensitivity RSpredict(20): 0.417 ProbKnot: 0.403 Positive Predictive Value RSpredict(20): 0.516 ProbKnot: 0.412 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Sfold vs ProbKnot Matthews Correlation Coefficient Sfold: 0.414 ProbKnot: 0.400 Sensitivity Sfold: 0.366 ProbKnot: 0.396 Positive Predictive Value Sfold: 0.469 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 MaxExpect vs ProbKnot Matthews Correlation Coefficient MaxExpect: 0.407 ProbKnot: 0.400 Sensitivity MaxExpect: 0.396 ProbKnot: 0.396 Positive Predictive Value MaxExpect: 0.418 ProbKnot: 0.403 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ ProbKnot vs UNAFold Matthews Correlation Coefficient ProbKnot: 0.400 UNAFold: 0.379 Sensitivity ProbKnot: 0.396 UNAFold: 0.379 Positive Predictive Value ProbKnot: 0.403 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs CRWrnafold Matthews Correlation Coefficient ProbKnot: 0.371 CRWrnafold: 0.356 Sensitivity ProbKnot: 0.365 CRWrnafold: 0.359 Positive Predictive Value ProbKnot: 0.378 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs Afold Matthews Correlation Coefficient ProbKnot: 0.391 Afold: 0.371 Sensitivity ProbKnot: 0.386 Afold: 0.371 Positive Predictive Value ProbKnot: 0.396 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs Fold Matthews Correlation Coefficient ProbKnot: 0.400 Fold: 0.375 Sensitivity ProbKnot: 0.396 Fold: 0.381 Positive Predictive Value ProbKnot: 0.403 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs RNAfold Matthews Correlation Coefficient ProbKnot: 0.400 RNAfold: 0.369 Sensitivity ProbKnot: 0.396 RNAfold: 0.373 Positive Predictive Value ProbKnot: 0.403 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs PknotsRG Matthews Correlation Coefficient ProbKnot: 0.391 PknotsRG: 0.363 Sensitivity ProbKnot: 0.384 PknotsRG: 0.363 Positive Predictive Value ProbKnot: 0.398 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs ProbKnot Matthews Correlation Coefficient Murlet(seed): 0.642 ProbKnot: 0.369 Sensitivity Murlet(seed): 0.606 ProbKnot: 0.364 Positive Predictive Value Murlet(seed): 0.681 ProbKnot: 0.375 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? ProbKnot vs McQFold Matthews Correlation Coefficient ProbKnot: 0.385 McQFold: 0.301 Sensitivity ProbKnot: 0.376 McQFold: 0.283 Positive Predictive Value ProbKnot: 0.395 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs ProbKnot Matthews Correlation Coefficient NanoFolder: N/A ProbKnot: N/A Sensitivity NanoFolder: N/A ProbKnot: N/A Positive Predictive Value NanoFolder: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs CentroidHomfold‑LAST Matthews Correlation Coefficient ProbKnot: N/A CentroidHomfold‑LAST: N/A Sensitivity ProbKnot: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value ProbKnot: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs CMfinder(seed) Matthews Correlation Coefficient ProbKnot: N/A CMfinder(seed): N/A Sensitivity ProbKnot: N/A CMfinder(seed): N/A Positive Predictive Value ProbKnot: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs RNAshapes Matthews Correlation Coefficient ProbKnot: N/A RNAshapes: N/A Sensitivity ProbKnot: N/A RNAshapes: N/A Positive Predictive Value ProbKnot: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs Multilign(seed) Matthews Correlation Coefficient ProbKnot: N/A Multilign(seed): N/A Sensitivity ProbKnot: N/A Multilign(seed): N/A Positive Predictive Value ProbKnot: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs Multilign(20) Matthews Correlation Coefficient ProbKnot: N/A Multilign(20): N/A Sensitivity ProbKnot: N/A Multilign(20): N/A Positive Predictive Value ProbKnot: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs ProbKnot Matthews Correlation Coefficient TurboFold(20): N/A ProbKnot: N/A Sensitivity TurboFold(20): N/A ProbKnot: N/A Positive Predictive Value TurboFold(20): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs Mastr(seed) Matthews Correlation Coefficient ProbKnot: 0.371 Mastr(seed): 0.000 Sensitivity ProbKnot: 0.372 Mastr(seed): 0.000 Positive Predictive Value ProbKnot: 0.371 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? ProbKnot vs RNAsubopt Matthews Correlation Coefficient ProbKnot: N/A RNAsubopt: N/A Sensitivity ProbKnot: N/A RNAsubopt: N/A Positive Predictive Value ProbKnot: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs ProbKnot Matthews Correlation Coefficient HotKnots: N/A ProbKnot: N/A Sensitivity HotKnots: N/A ProbKnot: N/A Positive Predictive Value HotKnots: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs Pknots Matthews Correlation Coefficient ProbKnot: N/A Pknots: N/A Sensitivity ProbKnot: N/A Pknots: N/A Positive Predictive Value ProbKnot: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs ProbKnot Matthews Correlation Coefficient Cylofold: N/A ProbKnot: N/A Sensitivity Cylofold: N/A ProbKnot: N/A Positive Predictive Value Cylofold: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs MCFold Matthews Correlation Coefficient ProbKnot: N/A MCFold: N/A Sensitivity ProbKnot: N/A MCFold: N/A Positive Predictive Value ProbKnot: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs ProbKnot Matthews Correlation Coefficient Vsfold5: N/A ProbKnot: N/A Sensitivity Vsfold5: N/A ProbKnot: N/A Positive Predictive Value Vsfold5: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs Vsfold4 Matthews Correlation Coefficient ProbKnot: N/A Vsfold4: N/A Sensitivity ProbKnot: N/A Vsfold4: N/A Positive Predictive Value ProbKnot: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs ProbKnot Matthews Correlation Coefficient Carnac(seed): 0.729 ProbKnot: 0.689 Sensitivity Carnac(seed): 0.570 ProbKnot: 0.681 Positive Predictive Value Carnac(seed): 0.932 ProbKnot: 0.698 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs ProbKnot Matthews Correlation Coefficient RNASampler(20): N/A ProbKnot: N/A Sensitivity RNASampler(20): N/A ProbKnot: N/A Positive Predictive Value RNASampler(20): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs CMfinder(20) Matthews Correlation Coefficient ProbKnot: N/A CMfinder(20): N/A Sensitivity ProbKnot: N/A CMfinder(20): N/A Positive Predictive Value ProbKnot: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs PPfold(seed) Matthews Correlation Coefficient ProbKnot: N/A PPfold(seed): N/A Sensitivity ProbKnot: N/A PPfold(seed): N/A Positive Predictive Value ProbKnot: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs ProbKnot Matthews Correlation Coefficient RDfolder: N/A ProbKnot: N/A Sensitivity RDfolder: N/A ProbKnot: N/A Positive Predictive Value RDfolder: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs ProbKnot Matthews Correlation Coefficient TurboFold(seed): N/A ProbKnot: N/A Sensitivity TurboFold(seed): N/A ProbKnot: N/A Positive Predictive Value TurboFold(seed): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs ProbKnot Matthews Correlation Coefficient RNASampler(seed): N/A ProbKnot: N/A Sensitivity RNASampler(seed): N/A ProbKnot: N/A Positive Predictive Value RNASampler(seed): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? ProbKnot vs RNASLOpt Matthews Correlation Coefficient ProbKnot: 0.286 RNASLOpt: 0.000 Sensitivity ProbKnot: 0.273 RNASLOpt: 0.000 Positive Predictive Value ProbKnot: 0.300 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs ProbKnot Matthews Correlation Coefficient Murlet(20): 0.621 ProbKnot: 0.401 Sensitivity Murlet(20): 0.544 ProbKnot: 0.397 Positive Predictive Value Murlet(20): 0.708 ProbKnot: 0.406 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? ProbKnot vs Alterna Matthews Correlation Coefficient ProbKnot: N/A Alterna: N/A Sensitivity ProbKnot: N/A Alterna: N/A Positive Predictive Value ProbKnot: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs ProbKnot Matthews Correlation Coefficient PPfold(20): 0.746 ProbKnot: 0.414 Sensitivity PPfold(20): 0.681 ProbKnot: 0.403 Positive Predictive Value PPfold(20): 0.818 ProbKnot: 0.425 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ ProbKnot vs RNAwolf Matthews Correlation Coefficient ProbKnot: 0.373 RNAwolf: 0.199 Sensitivity ProbKnot: 0.367 RNAwolf: 0.212 Positive Predictive Value ProbKnot: 0.379 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ ProbKnot vs Mastr(20) Matthews Correlation Coefficient ProbKnot: 0.313 Mastr(20): 0.000 Sensitivity ProbKnot: 0.319 Mastr(20): 0.000 Positive Predictive Value ProbKnot: 0.308 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.02343278931e-08
UNAFold	83 PETfold_pre2.0(seed) vs UNAFold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 UNAFold: 0.413 Sensitivity PETfold_pre2.0(seed): 0.731 UNAFold: 0.411 Positive Predictive Value PETfold_pre2.0(seed): 0.793 UNAFold: 0.416 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	287 ContextFold vs UNAFold Matthews Correlation Coefficient ContextFold: 0.638 UNAFold: 0.383 Sensitivity ContextFold: 0.601 UNAFold: 0.384 Positive Predictive Value ContextFold: 0.677 UNAFold: 0.382 Number of pairs reference - predicted secondary structure: 287 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs UNAFold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 UNAFold: 0.451 Sensitivity CentroidAlifold(seed): 0.706 UNAFold: 0.445 Positive Predictive Value CentroidAlifold(seed): 0.897 UNAFold: 0.458 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs UNAFold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 UNAFold: 0.417 Sensitivity PETfold_pre2.0(20): 0.697 UNAFold: 0.416 Positive Predictive Value PETfold_pre2.0(20): 0.760 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs UNAFold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 UNAFold: 0.417 Sensitivity CentroidAlifold(20): 0.614 UNAFold: 0.416 Positive Predictive Value CentroidAlifold(20): 0.860 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs UNAFold Matthews Correlation Coefficient RNAalifold(seed): 0.744 UNAFold: 0.443 Sensitivity RNAalifold(seed): 0.678 UNAFold: 0.438 Positive Predictive Value RNAalifold(seed): 0.818 UNAFold: 0.449 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs UNAFold Matthews Correlation Coefficient RNAalifold(20): 0.674 UNAFold: 0.417 Sensitivity RNAalifold(20): 0.621 UNAFold: 0.416 Positive Predictive Value RNAalifold(20): 0.732 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs UNAFold Matthews Correlation Coefficient MXScarna(seed): 0.659 UNAFold: 0.451 Sensitivity MXScarna(seed): 0.589 UNAFold: 0.445 Positive Predictive Value MXScarna(seed): 0.738 UNAFold: 0.458 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs UNAFold Matthews Correlation Coefficient MXScarna(20): 0.598 UNAFold: 0.417 Sensitivity MXScarna(20): 0.548 UNAFold: 0.416 Positive Predictive Value MXScarna(20): 0.653 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs UNAFold Matthews Correlation Coefficient Carnac(20): 0.558 UNAFold: 0.417 Sensitivity Carnac(20): 0.348 UNAFold: 0.416 Positive Predictive Value Carnac(20): 0.895 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs UNAFold Matthews Correlation Coefficient IPknot: 0.501 UNAFold: 0.380 Sensitivity IPknot: 0.431 UNAFold: 0.380 Positive Predictive Value IPknot: 0.583 UNAFold: 0.380 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs UNAFold Matthews Correlation Coefficient CentroidFold: 0.445 UNAFold: 0.360 Sensitivity CentroidFold: 0.378 UNAFold: 0.361 Positive Predictive Value CentroidFold: 0.525 UNAFold: 0.360 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs UNAFold Matthews Correlation Coefficient Contrafold: 0.466 UNAFold: 0.379 Sensitivity Contrafold: 0.447 UNAFold: 0.379 Positive Predictive Value Contrafold: 0.487 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs UNAFold Matthews Correlation Coefficient RSpredict(seed): 0.532 UNAFold: 0.448 Sensitivity RSpredict(seed): 0.447 UNAFold: 0.442 Positive Predictive Value RSpredict(seed): 0.632 UNAFold: 0.454 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs UNAFold Matthews Correlation Coefficient RSpredict(20): 0.464 UNAFold: 0.417 Sensitivity RSpredict(20): 0.417 UNAFold: 0.416 Positive Predictive Value RSpredict(20): 0.516 UNAFold: 0.419 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Sfold vs UNAFold Matthews Correlation Coefficient Sfold: 0.414 UNAFold: 0.379 Sensitivity Sfold: 0.366 UNAFold: 0.379 Positive Predictive Value Sfold: 0.469 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 MaxExpect vs UNAFold Matthews Correlation Coefficient MaxExpect: 0.407 UNAFold: 0.379 Sensitivity MaxExpect: 0.396 UNAFold: 0.379 Positive Predictive Value MaxExpect: 0.418 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ProbKnot vs UNAFold Matthews Correlation Coefficient ProbKnot: 0.400 UNAFold: 0.379 Sensitivity ProbKnot: 0.396 UNAFold: 0.379 Positive Predictive Value ProbKnot: 0.403 UNAFold: 0.379 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ UNAFold vs CRWrnafold Matthews Correlation Coefficient UNAFold: 0.360 CRWrnafold: 0.356 Sensitivity UNAFold: 0.357 CRWrnafold: 0.359 Positive Predictive Value UNAFold: 0.364 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 1.37177523642e-07	+ UNAFold vs Afold Matthews Correlation Coefficient UNAFold: 0.374 Afold: 0.371 Sensitivity UNAFold: 0.373 Afold: 0.371 Positive Predictive Value UNAFold: 0.375 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ UNAFold vs Fold Matthews Correlation Coefficient UNAFold: 0.379 Fold: 0.375 Sensitivity UNAFold: 0.379 Fold: 0.381 Positive Predictive Value UNAFold: 0.379 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ UNAFold vs RNAfold Matthews Correlation Coefficient UNAFold: 0.379 RNAfold: 0.369 Sensitivity UNAFold: 0.379 RNAfold: 0.373 Positive Predictive Value UNAFold: 0.379 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ UNAFold vs PknotsRG Matthews Correlation Coefficient UNAFold: 0.382 PknotsRG: 0.363 Sensitivity UNAFold: 0.379 PknotsRG: 0.363 Positive Predictive Value UNAFold: 0.386 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs UNAFold Matthews Correlation Coefficient Murlet(seed): 0.642 UNAFold: 0.351 Sensitivity Murlet(seed): 0.606 UNAFold: 0.348 Positive Predictive Value Murlet(seed): 0.681 UNAFold: 0.354 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? UNAFold vs McQFold Matthews Correlation Coefficient UNAFold: 0.384 McQFold: 0.301 Sensitivity UNAFold: 0.379 McQFold: 0.283 Positive Predictive Value UNAFold: 0.389 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs UNAFold Matthews Correlation Coefficient NanoFolder: N/A UNAFold: N/A Sensitivity NanoFolder: N/A UNAFold: N/A Positive Predictive Value NanoFolder: N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient UNAFold: N/A CentroidHomfold‑LAST: N/A Sensitivity UNAFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value UNAFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs CMfinder(seed) Matthews Correlation Coefficient UNAFold: N/A CMfinder(seed): N/A Sensitivity UNAFold: N/A CMfinder(seed): N/A Positive Predictive Value UNAFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs RNAshapes Matthews Correlation Coefficient UNAFold: N/A RNAshapes: N/A Sensitivity UNAFold: N/A RNAshapes: N/A Positive Predictive Value UNAFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Multilign(seed) Matthews Correlation Coefficient UNAFold: N/A Multilign(seed): N/A Sensitivity UNAFold: N/A Multilign(seed): N/A Positive Predictive Value UNAFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Multilign(20) Matthews Correlation Coefficient UNAFold: N/A Multilign(20): N/A Sensitivity UNAFold: N/A Multilign(20): N/A Positive Predictive Value UNAFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs TurboFold(20) Matthews Correlation Coefficient UNAFold: N/A TurboFold(20): N/A Sensitivity UNAFold: N/A TurboFold(20): N/A Positive Predictive Value UNAFold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Mastr(seed) Matthews Correlation Coefficient UNAFold: 0.358 Mastr(seed): 0.000 Sensitivity UNAFold: 0.361 Mastr(seed): 0.000 Positive Predictive Value UNAFold: 0.356 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? UNAFold vs RNAsubopt Matthews Correlation Coefficient UNAFold: N/A RNAsubopt: N/A Sensitivity UNAFold: N/A RNAsubopt: N/A Positive Predictive Value UNAFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs HotKnots Matthews Correlation Coefficient UNAFold: N/A HotKnots: N/A Sensitivity UNAFold: N/A HotKnots: N/A Positive Predictive Value UNAFold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Pknots Matthews Correlation Coefficient UNAFold: N/A Pknots: N/A Sensitivity UNAFold: N/A Pknots: N/A Positive Predictive Value UNAFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Cylofold Matthews Correlation Coefficient UNAFold: N/A Cylofold: N/A Sensitivity UNAFold: N/A Cylofold: N/A Positive Predictive Value UNAFold: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs MCFold Matthews Correlation Coefficient UNAFold: N/A MCFold: N/A Sensitivity UNAFold: N/A MCFold: N/A Positive Predictive Value UNAFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Vsfold5 Matthews Correlation Coefficient UNAFold: N/A Vsfold5: N/A Sensitivity UNAFold: N/A Vsfold5: N/A Positive Predictive Value UNAFold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Vsfold4 Matthews Correlation Coefficient UNAFold: N/A Vsfold4: N/A Sensitivity UNAFold: N/A Vsfold4: N/A Positive Predictive Value UNAFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs Carnac(seed) Matthews Correlation Coefficient UNAFold: 0.770 Carnac(seed): 0.729 Sensitivity UNAFold: 0.758 Carnac(seed): 0.570 Positive Predictive Value UNAFold: 0.783 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs UNAFold Matthews Correlation Coefficient RNASampler(20): N/A UNAFold: N/A Sensitivity RNASampler(20): N/A UNAFold: N/A Positive Predictive Value RNASampler(20): N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs CMfinder(20) Matthews Correlation Coefficient UNAFold: N/A CMfinder(20): N/A Sensitivity UNAFold: N/A CMfinder(20): N/A Positive Predictive Value UNAFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs PPfold(seed) Matthews Correlation Coefficient UNAFold: N/A PPfold(seed): N/A Sensitivity UNAFold: N/A PPfold(seed): N/A Positive Predictive Value UNAFold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs RDfolder Matthews Correlation Coefficient UNAFold: N/A RDfolder: N/A Sensitivity UNAFold: N/A RDfolder: N/A Positive Predictive Value UNAFold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs UNAFold Matthews Correlation Coefficient TurboFold(seed): N/A UNAFold: N/A Sensitivity TurboFold(seed): N/A UNAFold: N/A Positive Predictive Value TurboFold(seed): N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs RNASampler(seed) Matthews Correlation Coefficient UNAFold: N/A RNASampler(seed): N/A Sensitivity UNAFold: N/A RNASampler(seed): N/A Positive Predictive Value UNAFold: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? UNAFold vs RNASLOpt Matthews Correlation Coefficient UNAFold: 0.383 RNASLOpt: 0.000 Sensitivity UNAFold: 0.358 RNASLOpt: 0.000 Positive Predictive Value UNAFold: 0.412 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs UNAFold Matthews Correlation Coefficient Murlet(20): 0.621 UNAFold: 0.419 Sensitivity Murlet(20): 0.544 UNAFold: 0.418 Positive Predictive Value Murlet(20): 0.708 UNAFold: 0.420 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? UNAFold vs Alterna Matthews Correlation Coefficient UNAFold: N/A Alterna: N/A Sensitivity UNAFold: N/A Alterna: N/A Positive Predictive Value UNAFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs UNAFold Matthews Correlation Coefficient PPfold(20): 0.746 UNAFold: 0.441 Sensitivity PPfold(20): 0.681 UNAFold: 0.430 Positive Predictive Value PPfold(20): 0.818 UNAFold: 0.452 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ UNAFold vs RNAwolf Matthews Correlation Coefficient UNAFold: 0.334 RNAwolf: 0.199 Sensitivity UNAFold: 0.331 RNAwolf: 0.212 Positive Predictive Value UNAFold: 0.338 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ UNAFold vs Mastr(20) Matthews Correlation Coefficient UNAFold: 0.293 Mastr(20): 0.000 Sensitivity UNAFold: 0.299 Mastr(20): 0.000 Positive Predictive Value UNAFold: 0.288 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
CRWrnafold	29 PETfold_pre2.0(seed) vs CRWrnafold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.836 CRWrnafold: 0.515 Sensitivity PETfold_pre2.0(seed): 0.819 CRWrnafold: 0.508 Positive Predictive Value PETfold_pre2.0(seed): 0.854 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.1503931209e-08	138 ContextFold vs CRWrnafold Matthews Correlation Coefficient ContextFold: 0.723 CRWrnafold: 0.356 Sensitivity ContextFold: 0.676 CRWrnafold: 0.359 Positive Predictive Value ContextFold: 0.773 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	29 CentroidAlifold(seed) vs CRWrnafold Matthews Correlation Coefficient CentroidAlifold(seed): 0.844 CRWrnafold: 0.515 Sensitivity CentroidAlifold(seed): 0.786 CRWrnafold: 0.508 Positive Predictive Value CentroidAlifold(seed): 0.908 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.23657817852e-08	25 PETfold_pre2.0(20) vs CRWrnafold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.834 CRWrnafold: 0.537 Sensitivity PETfold_pre2.0(20): 0.819 CRWrnafold: 0.529 Positive Predictive Value PETfold_pre2.0(20): 0.850 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.19332990918e-08	25 CentroidAlifold(20) vs CRWrnafold Matthews Correlation Coefficient CentroidAlifold(20): 0.841 CRWrnafold: 0.537 Sensitivity CentroidAlifold(20): 0.775 CRWrnafold: 0.529 Positive Predictive Value CentroidAlifold(20): 0.912 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.1503931209e-08	29 RNAalifold(seed) vs CRWrnafold Matthews Correlation Coefficient RNAalifold(seed): 0.831 CRWrnafold: 0.515 Sensitivity RNAalifold(seed): 0.783 CRWrnafold: 0.508 Positive Predictive Value RNAalifold(seed): 0.882 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.23657817852e-08	25 RNAalifold(20) vs CRWrnafold Matthews Correlation Coefficient RNAalifold(20): 0.828 CRWrnafold: 0.537 Sensitivity RNAalifold(20): 0.789 CRWrnafold: 0.529 Positive Predictive Value RNAalifold(20): 0.868 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.02343278931e-08	29 MXScarna(seed) vs CRWrnafold Matthews Correlation Coefficient MXScarna(seed): 0.703 CRWrnafold: 0.515 Sensitivity MXScarna(seed): 0.628 CRWrnafold: 0.508 Positive Predictive Value MXScarna(seed): 0.788 CRWrnafold: 0.523 Number of pairs reference - predicted secondary structure: 29 Wilcoxon single-rank test P-value: 5.1503931209e-08	25 MXScarna(20) vs CRWrnafold Matthews Correlation Coefficient MXScarna(20): 0.690 CRWrnafold: 0.537 Sensitivity MXScarna(20): 0.628 CRWrnafold: 0.529 Positive Predictive Value MXScarna(20): 0.759 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.23657817852e-08	25 Carnac(20) vs CRWrnafold Matthews Correlation Coefficient Carnac(20): 0.615 CRWrnafold: 0.537 Sensitivity Carnac(20): 0.410 CRWrnafold: 0.529 Positive Predictive Value Carnac(20): 0.922 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 IPknot vs CRWrnafold Matthews Correlation Coefficient IPknot: 0.476 CRWrnafold: 0.356 Sensitivity IPknot: 0.393 CRWrnafold: 0.359 Positive Predictive Value IPknot: 0.576 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 CentroidFold vs CRWrnafold Matthews Correlation Coefficient CentroidFold: 0.445 CRWrnafold: 0.356 Sensitivity CentroidFold: 0.371 CRWrnafold: 0.359 Positive Predictive Value CentroidFold: 0.534 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 Contrafold vs CRWrnafold Matthews Correlation Coefficient Contrafold: 0.438 CRWrnafold: 0.356 Sensitivity Contrafold: 0.412 CRWrnafold: 0.359 Positive Predictive Value Contrafold: 0.467 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	25 RSpredict(seed) vs CRWrnafold Matthews Correlation Coefficient RSpredict(seed): 0.624 CRWrnafold: 0.525 Sensitivity RSpredict(seed): 0.531 CRWrnafold: 0.518 Positive Predictive Value RSpredict(seed): 0.733 CRWrnafold: 0.532 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.10776592382e-08	25 RSpredict(20) vs CRWrnafold Matthews Correlation Coefficient RSpredict(20): 0.677 CRWrnafold: 0.537 Sensitivity RSpredict(20): 0.609 CRWrnafold: 0.529 Positive Predictive Value RSpredict(20): 0.752 CRWrnafold: 0.545 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.02343278931e-08	138 Sfold vs CRWrnafold Matthews Correlation Coefficient Sfold: 0.397 CRWrnafold: 0.356 Sensitivity Sfold: 0.343 CRWrnafold: 0.359 Positive Predictive Value Sfold: 0.459 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 MaxExpect vs CRWrnafold Matthews Correlation Coefficient MaxExpect: 0.376 CRWrnafold: 0.356 Sensitivity MaxExpect: 0.360 CRWrnafold: 0.359 Positive Predictive Value MaxExpect: 0.394 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 ProbKnot vs CRWrnafold Matthews Correlation Coefficient ProbKnot: 0.371 CRWrnafold: 0.356 Sensitivity ProbKnot: 0.365 CRWrnafold: 0.359 Positive Predictive Value ProbKnot: 0.378 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 UNAFold vs CRWrnafold Matthews Correlation Coefficient UNAFold: 0.360 CRWrnafold: 0.356 Sensitivity UNAFold: 0.357 CRWrnafold: 0.359 Positive Predictive Value UNAFold: 0.364 CRWrnafold: 0.353 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 1.37177523642e-07		+ CRWrnafold vs Afold Matthews Correlation Coefficient CRWrnafold: 0.366 Afold: 0.350 Sensitivity CRWrnafold: 0.367 Afold: 0.347 Positive Predictive Value CRWrnafold: 0.365 Afold: 0.353 Number of pairs reference - predicted secondary structure: 117 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CRWrnafold vs Fold Matthews Correlation Coefficient CRWrnafold: 0.356 Fold: 0.347 Sensitivity CRWrnafold: 0.359 Fold: 0.350 Positive Predictive Value CRWrnafold: 0.353 Fold: 0.345 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CRWrnafold vs RNAfold Matthews Correlation Coefficient CRWrnafold: 0.356 RNAfold: 0.341 Sensitivity CRWrnafold: 0.359 RNAfold: 0.341 Positive Predictive Value CRWrnafold: 0.353 RNAfold: 0.341 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ CRWrnafold vs PknotsRG Matthews Correlation Coefficient CRWrnafold: 0.356 PknotsRG: 0.339 Sensitivity CRWrnafold: 0.359 PknotsRG: 0.339 Positive Predictive Value CRWrnafold: 0.353 PknotsRG: 0.340 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs CRWrnafold Matthews Correlation Coefficient Murlet(seed): 0.642 CRWrnafold: 0.373 Sensitivity Murlet(seed): 0.606 CRWrnafold: 0.364 Positive Predictive Value Murlet(seed): 0.681 CRWrnafold: 0.383 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? CRWrnafold vs McQFold Matthews Correlation Coefficient CRWrnafold: 0.310 McQFold: 0.301 Sensitivity CRWrnafold: 0.319 McQFold: 0.283 Positive Predictive Value CRWrnafold: 0.302 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs CRWrnafold Matthews Correlation Coefficient NanoFolder: N/A CRWrnafold: N/A Sensitivity NanoFolder: N/A CRWrnafold: N/A Positive Predictive Value NanoFolder: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs CRWrnafold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A CRWrnafold: N/A Sensitivity CentroidHomfold‑LAST: N/A CRWrnafold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs CRWrnafold Matthews Correlation Coefficient CMfinder(seed): N/A CRWrnafold: N/A Sensitivity CMfinder(seed): N/A CRWrnafold: N/A Positive Predictive Value CMfinder(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs CRWrnafold Matthews Correlation Coefficient RNAshapes: N/A CRWrnafold: N/A Sensitivity RNAshapes: N/A CRWrnafold: N/A Positive Predictive Value RNAshapes: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CRWrnafold Matthews Correlation Coefficient Multilign(seed): N/A CRWrnafold: N/A Sensitivity Multilign(seed): N/A CRWrnafold: N/A Positive Predictive Value Multilign(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CRWrnafold vs Multilign(20) Matthews Correlation Coefficient CRWrnafold: N/A Multilign(20): N/A Sensitivity CRWrnafold: N/A Multilign(20): N/A Positive Predictive Value CRWrnafold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CRWrnafold Matthews Correlation Coefficient TurboFold(20): N/A CRWrnafold: N/A Sensitivity TurboFold(20): N/A CRWrnafold: N/A Positive Predictive Value TurboFold(20): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs CRWrnafold Matthews Correlation Coefficient Mastr(seed): N/A CRWrnafold: N/A Sensitivity Mastr(seed): N/A CRWrnafold: N/A Positive Predictive Value Mastr(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs CRWrnafold Matthews Correlation Coefficient RNAsubopt: N/A CRWrnafold: N/A Sensitivity RNAsubopt: N/A CRWrnafold: N/A Positive Predictive Value RNAsubopt: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CRWrnafold Matthews Correlation Coefficient HotKnots: N/A CRWrnafold: N/A Sensitivity HotKnots: N/A CRWrnafold: N/A Positive Predictive Value HotKnots: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CRWrnafold Matthews Correlation Coefficient Pknots: N/A CRWrnafold: N/A Sensitivity Pknots: N/A CRWrnafold: N/A Positive Predictive Value Pknots: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CRWrnafold Matthews Correlation Coefficient Cylofold: N/A CRWrnafold: N/A Sensitivity Cylofold: N/A CRWrnafold: N/A Positive Predictive Value Cylofold: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CRWrnafold vs MCFold Matthews Correlation Coefficient CRWrnafold: N/A MCFold: N/A Sensitivity CRWrnafold: N/A MCFold: N/A Positive Predictive Value CRWrnafold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CRWrnafold Matthews Correlation Coefficient Vsfold5: N/A CRWrnafold: N/A Sensitivity Vsfold5: N/A CRWrnafold: N/A Positive Predictive Value Vsfold5: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CRWrnafold Matthews Correlation Coefficient Vsfold4: N/A CRWrnafold: N/A Sensitivity Vsfold4: N/A CRWrnafold: N/A Positive Predictive Value Vsfold4: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs CRWrnafold Matthews Correlation Coefficient Carnac(seed): N/A CRWrnafold: N/A Sensitivity Carnac(seed): N/A CRWrnafold: N/A Positive Predictive Value Carnac(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs CRWrnafold Matthews Correlation Coefficient RNASampler(20): N/A CRWrnafold: N/A Sensitivity RNASampler(20): N/A CRWrnafold: N/A Positive Predictive Value RNASampler(20): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CRWrnafold vs CMfinder(20) Matthews Correlation Coefficient CRWrnafold: N/A CMfinder(20): N/A Sensitivity CRWrnafold: N/A CMfinder(20): N/A Positive Predictive Value CRWrnafold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs CRWrnafold Matthews Correlation Coefficient PPfold(seed): N/A CRWrnafold: N/A Sensitivity PPfold(seed): N/A CRWrnafold: N/A Positive Predictive Value PPfold(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CRWrnafold Matthews Correlation Coefficient RDfolder: N/A CRWrnafold: N/A Sensitivity RDfolder: N/A CRWrnafold: N/A Positive Predictive Value RDfolder: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CRWrnafold Matthews Correlation Coefficient TurboFold(seed): N/A CRWrnafold: N/A Sensitivity TurboFold(seed): N/A CRWrnafold: N/A Positive Predictive Value TurboFold(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CRWrnafold Matthews Correlation Coefficient RNASampler(seed): N/A CRWrnafold: N/A Sensitivity RNASampler(seed): N/A CRWrnafold: N/A Positive Predictive Value RNASampler(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CRWrnafold vs RNASLOpt Matthews Correlation Coefficient CRWrnafold: 0.311 RNASLOpt: 0.000 Sensitivity CRWrnafold: 0.304 RNASLOpt: 0.000 Positive Predictive Value CRWrnafold: 0.320 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs CRWrnafold Matthews Correlation Coefficient Murlet(20): 0.771 CRWrnafold: 0.531 Sensitivity Murlet(20): 0.702 CRWrnafold: 0.522 Positive Predictive Value Murlet(20): 0.847 CRWrnafold: 0.541 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? Alterna vs CRWrnafold Matthews Correlation Coefficient Alterna: N/A CRWrnafold: N/A Sensitivity Alterna: N/A CRWrnafold: N/A Positive Predictive Value Alterna: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CRWrnafold Matthews Correlation Coefficient PPfold(20): 0.844 CRWrnafold: 0.653 Sensitivity PPfold(20): 0.809 CRWrnafold: 0.640 Positive Predictive Value PPfold(20): 0.881 CRWrnafold: 0.666 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	+ CRWrnafold vs RNAwolf Matthews Correlation Coefficient CRWrnafold: 0.296 RNAwolf: 0.199 Sensitivity CRWrnafold: 0.302 RNAwolf: 0.212 Positive Predictive Value CRWrnafold: 0.292 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	? CRWrnafold vs Mastr(20) Matthews Correlation Coefficient CRWrnafold: 0.186 Mastr(20): 0.000 Sensitivity CRWrnafold: 0.183 Mastr(20): 0.000 Positive Predictive Value CRWrnafold: 0.190 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0
Afold	79 PETfold_pre2.0(seed) vs Afold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.762 Afold: 0.408 Sensitivity PETfold_pre2.0(seed): 0.732 Afold: 0.406 Positive Predictive Value PETfold_pre2.0(seed): 0.794 Afold: 0.409 Number of pairs reference - predicted secondary structure: 79 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 ContextFold vs Afold Matthews Correlation Coefficient ContextFold: 0.658 Afold: 0.371 Sensitivity ContextFold: 0.617 Afold: 0.371 Positive Predictive Value ContextFold: 0.702 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	61 CentroidAlifold(seed) vs Afold Matthews Correlation Coefficient CentroidAlifold(seed): 0.797 Afold: 0.444 Sensitivity CentroidAlifold(seed): 0.708 Afold: 0.438 Positive Predictive Value CentroidAlifold(seed): 0.898 Afold: 0.450 Number of pairs reference - predicted secondary structure: 61 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 PETfold_pre2.0(20) vs Afold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.729 Afold: 0.410 Sensitivity PETfold_pre2.0(20): 0.698 Afold: 0.410 Positive Predictive Value PETfold_pre2.0(20): 0.761 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 CentroidAlifold(20) vs Afold Matthews Correlation Coefficient CentroidAlifold(20): 0.728 Afold: 0.410 Sensitivity CentroidAlifold(20): 0.616 Afold: 0.410 Positive Predictive Value CentroidAlifold(20): 0.861 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	65 RNAalifold(seed) vs Afold Matthews Correlation Coefficient RNAalifold(seed): 0.746 Afold: 0.436 Sensitivity RNAalifold(seed): 0.679 Afold: 0.432 Positive Predictive Value RNAalifold(seed): 0.819 Afold: 0.442 Number of pairs reference - predicted secondary structure: 65 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 RNAalifold(20) vs Afold Matthews Correlation Coefficient RNAalifold(20): 0.676 Afold: 0.410 Sensitivity RNAalifold(20): 0.622 Afold: 0.410 Positive Predictive Value RNAalifold(20): 0.735 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	61 MXScarna(seed) vs Afold Matthews Correlation Coefficient MXScarna(seed): 0.662 Afold: 0.444 Sensitivity MXScarna(seed): 0.591 Afold: 0.438 Positive Predictive Value MXScarna(seed): 0.741 Afold: 0.450 Number of pairs reference - predicted secondary structure: 61 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 MXScarna(20) vs Afold Matthews Correlation Coefficient MXScarna(20): 0.599 Afold: 0.410 Sensitivity MXScarna(20): 0.549 Afold: 0.410 Positive Predictive Value MXScarna(20): 0.654 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 Carnac(20) vs Afold Matthews Correlation Coefficient Carnac(20): 0.559 Afold: 0.410 Sensitivity Carnac(20): 0.349 Afold: 0.410 Positive Predictive Value Carnac(20): 0.895 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	219 IPknot vs Afold Matthews Correlation Coefficient IPknot: 0.496 Afold: 0.371 Sensitivity IPknot: 0.423 Afold: 0.372 Positive Predictive Value IPknot: 0.583 Afold: 0.371 Number of pairs reference - predicted secondary structure: 219 Wilcoxon single-rank test P-value: 3.56938820447e-08	183 CentroidFold vs Afold Matthews Correlation Coefficient CentroidFold: 0.452 Afold: 0.362 Sensitivity CentroidFold: 0.382 Afold: 0.363 Positive Predictive Value CentroidFold: 0.534 Afold: 0.362 Number of pairs reference - predicted secondary structure: 183 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 Contrafold vs Afold Matthews Correlation Coefficient Contrafold: 0.459 Afold: 0.371 Sensitivity Contrafold: 0.437 Afold: 0.371 Positive Predictive Value Contrafold: 0.481 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	55 RSpredict(seed) vs Afold Matthews Correlation Coefficient RSpredict(seed): 0.539 Afold: 0.442 Sensitivity RSpredict(seed): 0.453 Afold: 0.437 Positive Predictive Value RSpredict(seed): 0.641 Afold: 0.448 Number of pairs reference - predicted secondary structure: 55 Wilcoxon single-rank test P-value: 3.56938820447e-08	73 RSpredict(20) vs Afold Matthews Correlation Coefficient RSpredict(20): 0.461 Afold: 0.410 Sensitivity RSpredict(20): 0.415 Afold: 0.410 Positive Predictive Value RSpredict(20): 0.513 Afold: 0.411 Number of pairs reference - predicted secondary structure: 73 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 Sfold vs Afold Matthews Correlation Coefficient Sfold: 0.409 Afold: 0.371 Sensitivity Sfold: 0.359 Afold: 0.371 Positive Predictive Value Sfold: 0.467 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 MaxExpect vs Afold Matthews Correlation Coefficient MaxExpect: 0.398 Afold: 0.371 Sensitivity MaxExpect: 0.386 Afold: 0.371 Positive Predictive Value MaxExpect: 0.411 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 ProbKnot vs Afold Matthews Correlation Coefficient ProbKnot: 0.391 Afold: 0.371 Sensitivity ProbKnot: 0.386 Afold: 0.371 Positive Predictive Value ProbKnot: 0.396 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 UNAFold vs Afold Matthews Correlation Coefficient UNAFold: 0.374 Afold: 0.371 Sensitivity UNAFold: 0.373 Afold: 0.371 Positive Predictive Value UNAFold: 0.375 Afold: 0.370 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	117 CRWrnafold vs Afold Matthews Correlation Coefficient CRWrnafold: 0.366 Afold: 0.350 Sensitivity CRWrnafold: 0.367 Afold: 0.347 Positive Predictive Value CRWrnafold: 0.365 Afold: 0.353 Number of pairs reference - predicted secondary structure: 117 Wilcoxon single-rank test P-value: 3.56938820447e-08		+ Afold vs Fold Matthews Correlation Coefficient Afold: 0.371 Fold: 0.369 Sensitivity Afold: 0.371 Fold: 0.374 Positive Predictive Value Afold: 0.370 Fold: 0.365 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 2.08735181805e-06	+ Afold vs RNAfold Matthews Correlation Coefficient Afold: 0.371 RNAfold: 0.362 Sensitivity Afold: 0.371 RNAfold: 0.364 Positive Predictive Value Afold: 0.370 RNAfold: 0.360 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Afold vs PknotsRG Matthews Correlation Coefficient Afold: 0.383 PknotsRG: 0.368 Sensitivity Afold: 0.380 PknotsRG: 0.366 Positive Predictive Value Afold: 0.387 PknotsRG: 0.371 Number of pairs reference - predicted secondary structure: 144 Wilcoxon single-rank test P-value: 3.56938820447e-08	? Murlet(seed) vs Afold Matthews Correlation Coefficient Murlet(seed): 0.642 Afold: 0.370 Sensitivity Murlet(seed): 0.606 Afold: 0.369 Positive Predictive Value Murlet(seed): 0.681 Afold: 0.371 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Afold vs McQFold Matthews Correlation Coefficient Afold: 0.327 McQFold: 0.275 Sensitivity Afold: 0.322 McQFold: 0.255 Positive Predictive Value Afold: 0.332 McQFold: 0.297 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs Afold Matthews Correlation Coefficient NanoFolder: N/A Afold: N/A Sensitivity NanoFolder: N/A Afold: N/A Positive Predictive Value NanoFolder: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Afold: N/A CentroidHomfold‑LAST: N/A Sensitivity Afold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Afold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Afold Matthews Correlation Coefficient CMfinder(seed): N/A Afold: N/A Sensitivity CMfinder(seed): N/A Afold: N/A Positive Predictive Value CMfinder(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs RNAshapes Matthews Correlation Coefficient Afold: N/A RNAshapes: N/A Sensitivity Afold: N/A RNAshapes: N/A Positive Predictive Value Afold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Afold Matthews Correlation Coefficient Multilign(seed): N/A Afold: N/A Sensitivity Multilign(seed): N/A Afold: N/A Positive Predictive Value Multilign(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs Multilign(20) Matthews Correlation Coefficient Afold: N/A Multilign(20): N/A Sensitivity Afold: N/A Multilign(20): N/A Positive Predictive Value Afold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Afold Matthews Correlation Coefficient TurboFold(20): N/A Afold: N/A Sensitivity TurboFold(20): N/A Afold: N/A Positive Predictive Value TurboFold(20): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs Mastr(seed) Matthews Correlation Coefficient Afold: 0.478 Mastr(seed): 0.000 Sensitivity Afold: 0.476 Mastr(seed): 0.000 Positive Predictive Value Afold: 0.480 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	? Afold vs RNAsubopt Matthews Correlation Coefficient Afold: N/A RNAsubopt: N/A Sensitivity Afold: N/A RNAsubopt: N/A Positive Predictive Value Afold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Afold Matthews Correlation Coefficient HotKnots: N/A Afold: N/A Sensitivity HotKnots: N/A Afold: N/A Positive Predictive Value HotKnots: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Afold Matthews Correlation Coefficient Pknots: N/A Afold: N/A Sensitivity Pknots: N/A Afold: N/A Positive Predictive Value Pknots: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Afold Matthews Correlation Coefficient Cylofold: N/A Afold: N/A Sensitivity Cylofold: N/A Afold: N/A Positive Predictive Value Cylofold: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs MCFold Matthews Correlation Coefficient Afold: N/A MCFold: N/A Sensitivity Afold: N/A MCFold: N/A Positive Predictive Value Afold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Afold Matthews Correlation Coefficient Vsfold5: N/A Afold: N/A Sensitivity Vsfold5: N/A Afold: N/A Positive Predictive Value Vsfold5: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Afold Matthews Correlation Coefficient Vsfold4: N/A Afold: N/A Sensitivity Vsfold4: N/A Afold: N/A Positive Predictive Value Vsfold4: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs Carnac(seed) Matthews Correlation Coefficient Afold: 0.779 Carnac(seed): 0.729 Sensitivity Afold: 0.766 Carnac(seed): 0.570 Positive Predictive Value Afold: 0.792 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs Afold Matthews Correlation Coefficient RNASampler(20): N/A Afold: N/A Sensitivity RNASampler(20): N/A Afold: N/A Positive Predictive Value RNASampler(20): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs CMfinder(20) Matthews Correlation Coefficient Afold: N/A CMfinder(20): N/A Sensitivity Afold: N/A CMfinder(20): N/A Positive Predictive Value Afold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Afold Matthews Correlation Coefficient PPfold(seed): N/A Afold: N/A Sensitivity PPfold(seed): N/A Afold: N/A Positive Predictive Value PPfold(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Afold Matthews Correlation Coefficient RDfolder: N/A Afold: N/A Sensitivity RDfolder: N/A Afold: N/A Positive Predictive Value RDfolder: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Afold Matthews Correlation Coefficient TurboFold(seed): N/A Afold: N/A Sensitivity TurboFold(seed): N/A Afold: N/A Positive Predictive Value TurboFold(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Afold Matthews Correlation Coefficient RNASampler(seed): N/A Afold: N/A Sensitivity RNASampler(seed): N/A Afold: N/A Positive Predictive Value RNASampler(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Afold vs RNASLOpt Matthews Correlation Coefficient Afold: 0.385 RNASLOpt: 0.000 Sensitivity Afold: 0.358 RNASLOpt: 0.000 Positive Predictive Value Afold: 0.415 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs Afold Matthews Correlation Coefficient Murlet(20): 0.621 Afold: 0.409 Sensitivity Murlet(20): 0.544 Afold: 0.407 Positive Predictive Value Murlet(20): 0.708 Afold: 0.411 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs Afold Matthews Correlation Coefficient Alterna: N/A Afold: N/A Sensitivity Alterna: N/A Afold: N/A Positive Predictive Value Alterna: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Afold Matthews Correlation Coefficient PPfold(20): 0.729 Afold: 0.400 Sensitivity PPfold(20): 0.658 Afold: 0.393 Positive Predictive Value PPfold(20): 0.808 Afold: 0.409 Number of pairs reference - predicted secondary structure: 5 Wilcoxon single-rank test P-value: 0.0	+ Afold vs RNAwolf Matthews Correlation Coefficient Afold: 0.324 RNAwolf: 0.195 Sensitivity Afold: 0.320 RNAwolf: 0.206 Positive Predictive Value Afold: 0.329 RNAwolf: 0.185 Number of pairs reference - predicted secondary structure: 71 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Afold vs Mastr(20) Matthews Correlation Coefficient Afold: 0.305 Mastr(20): 0.000 Sensitivity Afold: 0.313 Mastr(20): 0.000 Positive Predictive Value Afold: 0.299 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.10776592382e-08
Fold	83 PETfold_pre2.0(seed) vs Fold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 Fold: 0.383 Sensitivity PETfold_pre2.0(seed): 0.731 Fold: 0.388 Positive Predictive Value PETfold_pre2.0(seed): 0.793 Fold: 0.379 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs Fold Matthews Correlation Coefficient ContextFold: 0.644 Fold: 0.375 Sensitivity ContextFold: 0.605 Fold: 0.381 Positive Predictive Value ContextFold: 0.686 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs Fold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 Fold: 0.412 Sensitivity CentroidAlifold(seed): 0.706 Fold: 0.413 Positive Predictive Value CentroidAlifold(seed): 0.897 Fold: 0.411 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs Fold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 Fold: 0.385 Sensitivity PETfold_pre2.0(20): 0.697 Fold: 0.390 Positive Predictive Value PETfold_pre2.0(20): 0.760 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs Fold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Fold: 0.385 Sensitivity CentroidAlifold(20): 0.614 Fold: 0.390 Positive Predictive Value CentroidAlifold(20): 0.860 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs Fold Matthews Correlation Coefficient RNAalifold(seed): 0.744 Fold: 0.406 Sensitivity RNAalifold(seed): 0.678 Fold: 0.408 Positive Predictive Value RNAalifold(seed): 0.818 Fold: 0.404 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs Fold Matthews Correlation Coefficient RNAalifold(20): 0.674 Fold: 0.385 Sensitivity RNAalifold(20): 0.621 Fold: 0.390 Positive Predictive Value RNAalifold(20): 0.732 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs Fold Matthews Correlation Coefficient MXScarna(seed): 0.659 Fold: 0.412 Sensitivity MXScarna(seed): 0.589 Fold: 0.413 Positive Predictive Value MXScarna(seed): 0.738 Fold: 0.411 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs Fold Matthews Correlation Coefficient MXScarna(20): 0.598 Fold: 0.385 Sensitivity MXScarna(20): 0.548 Fold: 0.390 Positive Predictive Value MXScarna(20): 0.653 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs Fold Matthews Correlation Coefficient Carnac(20): 0.558 Fold: 0.385 Sensitivity Carnac(20): 0.348 Fold: 0.390 Positive Predictive Value Carnac(20): 0.895 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs Fold Matthews Correlation Coefficient IPknot: 0.501 Fold: 0.376 Sensitivity IPknot: 0.431 Fold: 0.381 Positive Predictive Value IPknot: 0.583 Fold: 0.370 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs Fold Matthews Correlation Coefficient CentroidFold: 0.445 Fold: 0.347 Sensitivity CentroidFold: 0.378 Fold: 0.353 Positive Predictive Value CentroidFold: 0.525 Fold: 0.342 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs Fold Matthews Correlation Coefficient Contrafold: 0.466 Fold: 0.375 Sensitivity Contrafold: 0.447 Fold: 0.381 Positive Predictive Value Contrafold: 0.487 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs Fold Matthews Correlation Coefficient RSpredict(seed): 0.532 Fold: 0.407 Sensitivity RSpredict(seed): 0.447 Fold: 0.409 Positive Predictive Value RSpredict(seed): 0.632 Fold: 0.406 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs Fold Matthews Correlation Coefficient RSpredict(20): 0.464 Fold: 0.385 Sensitivity RSpredict(20): 0.417 Fold: 0.390 Positive Predictive Value RSpredict(20): 0.516 Fold: 0.381 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Sfold vs Fold Matthews Correlation Coefficient Sfold: 0.414 Fold: 0.375 Sensitivity Sfold: 0.366 Fold: 0.381 Positive Predictive Value Sfold: 0.469 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 MaxExpect vs Fold Matthews Correlation Coefficient MaxExpect: 0.407 Fold: 0.375 Sensitivity MaxExpect: 0.396 Fold: 0.381 Positive Predictive Value MaxExpect: 0.418 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ProbKnot vs Fold Matthews Correlation Coefficient ProbKnot: 0.400 Fold: 0.375 Sensitivity ProbKnot: 0.396 Fold: 0.381 Positive Predictive Value ProbKnot: 0.403 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 UNAFold vs Fold Matthews Correlation Coefficient UNAFold: 0.379 Fold: 0.375 Sensitivity UNAFold: 0.379 Fold: 0.381 Positive Predictive Value UNAFold: 0.379 Fold: 0.369 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 CRWrnafold vs Fold Matthews Correlation Coefficient CRWrnafold: 0.356 Fold: 0.347 Sensitivity CRWrnafold: 0.359 Fold: 0.350 Positive Predictive Value CRWrnafold: 0.353 Fold: 0.345 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 Afold vs Fold Matthews Correlation Coefficient Afold: 0.371 Fold: 0.369 Sensitivity Afold: 0.371 Fold: 0.374 Positive Predictive Value Afold: 0.370 Fold: 0.365 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 2.08735181805e-06		+ Fold vs RNAfold Matthews Correlation Coefficient Fold: 0.375 RNAfold: 0.369 Sensitivity Fold: 0.381 RNAfold: 0.373 Positive Predictive Value Fold: 0.369 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Fold vs PknotsRG Matthews Correlation Coefficient Fold: 0.367 PknotsRG: 0.363 Sensitivity Fold: 0.370 PknotsRG: 0.363 Positive Predictive Value Fold: 0.364 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.5012140095e-07	? Murlet(seed) vs Fold Matthews Correlation Coefficient Murlet(seed): 0.642 Fold: 0.372 Sensitivity Murlet(seed): 0.606 Fold: 0.364 Positive Predictive Value Murlet(seed): 0.681 Fold: 0.381 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Fold vs McQFold Matthews Correlation Coefficient Fold: 0.386 McQFold: 0.301 Sensitivity Fold: 0.386 McQFold: 0.283 Positive Predictive Value Fold: 0.386 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs Fold Matthews Correlation Coefficient NanoFolder: N/A Fold: N/A Sensitivity NanoFolder: N/A Fold: N/A Positive Predictive Value NanoFolder: N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Fold: N/A CentroidHomfold‑LAST: N/A Sensitivity Fold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Fold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs CMfinder(seed) Matthews Correlation Coefficient Fold: N/A CMfinder(seed): N/A Sensitivity Fold: N/A CMfinder(seed): N/A Positive Predictive Value Fold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs RNAshapes Matthews Correlation Coefficient Fold: N/A RNAshapes: N/A Sensitivity Fold: N/A RNAshapes: N/A Positive Predictive Value Fold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Multilign(seed) Matthews Correlation Coefficient Fold: N/A Multilign(seed): N/A Sensitivity Fold: N/A Multilign(seed): N/A Positive Predictive Value Fold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Multilign(20) Matthews Correlation Coefficient Fold: N/A Multilign(20): N/A Sensitivity Fold: N/A Multilign(20): N/A Positive Predictive Value Fold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs TurboFold(20) Matthews Correlation Coefficient Fold: N/A TurboFold(20): N/A Sensitivity Fold: N/A TurboFold(20): N/A Positive Predictive Value Fold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Mastr(seed) Matthews Correlation Coefficient Fold: 0.351 Mastr(seed): 0.000 Sensitivity Fold: 0.359 Mastr(seed): 0.000 Positive Predictive Value Fold: 0.344 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? Fold vs RNAsubopt Matthews Correlation Coefficient Fold: N/A RNAsubopt: N/A Sensitivity Fold: N/A RNAsubopt: N/A Positive Predictive Value Fold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs HotKnots Matthews Correlation Coefficient Fold: N/A HotKnots: N/A Sensitivity Fold: N/A HotKnots: N/A Positive Predictive Value Fold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Pknots Matthews Correlation Coefficient Fold: N/A Pknots: N/A Sensitivity Fold: N/A Pknots: N/A Positive Predictive Value Fold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Cylofold Matthews Correlation Coefficient Fold: N/A Cylofold: N/A Sensitivity Fold: N/A Cylofold: N/A Positive Predictive Value Fold: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs MCFold Matthews Correlation Coefficient Fold: N/A MCFold: N/A Sensitivity Fold: N/A MCFold: N/A Positive Predictive Value Fold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Vsfold5 Matthews Correlation Coefficient Fold: N/A Vsfold5: N/A Sensitivity Fold: N/A Vsfold5: N/A Positive Predictive Value Fold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs Vsfold4 Matthews Correlation Coefficient Fold: N/A Vsfold4: N/A Sensitivity Fold: N/A Vsfold4: N/A Positive Predictive Value Fold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs Fold Matthews Correlation Coefficient Carnac(seed): 0.729 Fold: 0.563 Sensitivity Carnac(seed): 0.570 Fold: 0.566 Positive Predictive Value Carnac(seed): 0.932 Fold: 0.562 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs Fold Matthews Correlation Coefficient RNASampler(20): N/A Fold: N/A Sensitivity RNASampler(20): N/A Fold: N/A Positive Predictive Value RNASampler(20): N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs CMfinder(20) Matthews Correlation Coefficient Fold: N/A CMfinder(20): N/A Sensitivity Fold: N/A CMfinder(20): N/A Positive Predictive Value Fold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs PPfold(seed) Matthews Correlation Coefficient Fold: N/A PPfold(seed): N/A Sensitivity Fold: N/A PPfold(seed): N/A Positive Predictive Value Fold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs RDfolder Matthews Correlation Coefficient Fold: N/A RDfolder: N/A Sensitivity Fold: N/A RDfolder: N/A Positive Predictive Value Fold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Fold Matthews Correlation Coefficient TurboFold(seed): N/A Fold: N/A Sensitivity TurboFold(seed): N/A Fold: N/A Positive Predictive Value TurboFold(seed): N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs RNASampler(seed) Matthews Correlation Coefficient Fold: N/A RNASampler(seed): N/A Sensitivity Fold: N/A RNASampler(seed): N/A Positive Predictive Value Fold: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Fold vs RNASLOpt Matthews Correlation Coefficient Fold: 0.236 RNASLOpt: 0.000 Sensitivity Fold: 0.227 RNASLOpt: 0.000 Positive Predictive Value Fold: 0.247 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs Fold Matthews Correlation Coefficient Murlet(20): 0.621 Fold: 0.371 Sensitivity Murlet(20): 0.544 Fold: 0.375 Positive Predictive Value Murlet(20): 0.708 Fold: 0.368 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Fold vs Alterna Matthews Correlation Coefficient Fold: N/A Alterna: N/A Sensitivity Fold: N/A Alterna: N/A Positive Predictive Value Fold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Fold Matthews Correlation Coefficient PPfold(20): 0.746 Fold: 0.375 Sensitivity PPfold(20): 0.681 Fold: 0.375 Positive Predictive Value PPfold(20): 0.818 Fold: 0.375 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ Fold vs RNAwolf Matthews Correlation Coefficient Fold: 0.341 RNAwolf: 0.199 Sensitivity Fold: 0.344 RNAwolf: 0.212 Positive Predictive Value Fold: 0.340 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ Fold vs Mastr(20) Matthews Correlation Coefficient Fold: 0.298 Mastr(20): 0.000 Sensitivity Fold: 0.310 Mastr(20): 0.000 Positive Predictive Value Fold: 0.288 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08
RNAfold	83 PETfold_pre2.0(seed) vs RNAfold Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.761 RNAfold: 0.391 Sensitivity PETfold_pre2.0(seed): 0.731 RNAfold: 0.392 Positive Predictive Value PETfold_pre2.0(seed): 0.793 RNAfold: 0.389 Number of pairs reference - predicted secondary structure: 83 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ContextFold vs RNAfold Matthews Correlation Coefficient ContextFold: 0.644 RNAfold: 0.369 Sensitivity ContextFold: 0.605 RNAfold: 0.373 Positive Predictive Value ContextFold: 0.686 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 CentroidAlifold(seed) vs RNAfold Matthews Correlation Coefficient CentroidAlifold(seed): 0.796 RNAfold: 0.421 Sensitivity CentroidAlifold(seed): 0.706 RNAfold: 0.418 Positive Predictive Value CentroidAlifold(seed): 0.897 RNAfold: 0.424 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 PETfold_pre2.0(20) vs RNAfold Matthews Correlation Coefficient PETfold_pre2.0(20): 0.728 RNAfold: 0.396 Sensitivity PETfold_pre2.0(20): 0.697 RNAfold: 0.398 Positive Predictive Value PETfold_pre2.0(20): 0.760 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 CentroidAlifold(20) vs RNAfold Matthews Correlation Coefficient CentroidAlifold(20): 0.726 RNAfold: 0.396 Sensitivity CentroidAlifold(20): 0.614 RNAfold: 0.398 Positive Predictive Value CentroidAlifold(20): 0.860 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	68 RNAalifold(seed) vs RNAfold Matthews Correlation Coefficient RNAalifold(seed): 0.744 RNAfold: 0.416 Sensitivity RNAalifold(seed): 0.678 RNAfold: 0.414 Positive Predictive Value RNAalifold(seed): 0.818 RNAfold: 0.418 Number of pairs reference - predicted secondary structure: 68 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RNAalifold(20) vs RNAfold Matthews Correlation Coefficient RNAalifold(20): 0.674 RNAfold: 0.396 Sensitivity RNAalifold(20): 0.621 RNAfold: 0.398 Positive Predictive Value RNAalifold(20): 0.732 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	64 MXScarna(seed) vs RNAfold Matthews Correlation Coefficient MXScarna(seed): 0.659 RNAfold: 0.421 Sensitivity MXScarna(seed): 0.589 RNAfold: 0.418 Positive Predictive Value MXScarna(seed): 0.738 RNAfold: 0.424 Number of pairs reference - predicted secondary structure: 64 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 MXScarna(20) vs RNAfold Matthews Correlation Coefficient MXScarna(20): 0.598 RNAfold: 0.396 Sensitivity MXScarna(20): 0.548 RNAfold: 0.398 Positive Predictive Value MXScarna(20): 0.653 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 Carnac(20) vs RNAfold Matthews Correlation Coefficient Carnac(20): 0.558 RNAfold: 0.396 Sensitivity Carnac(20): 0.348 RNAfold: 0.398 Positive Predictive Value Carnac(20): 0.895 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	272 IPknot vs RNAfold Matthews Correlation Coefficient IPknot: 0.501 RNAfold: 0.370 Sensitivity IPknot: 0.431 RNAfold: 0.374 Positive Predictive Value IPknot: 0.583 RNAfold: 0.367 Number of pairs reference - predicted secondary structure: 272 Wilcoxon single-rank test P-value: 3.56938820447e-08	215 CentroidFold vs RNAfold Matthews Correlation Coefficient CentroidFold: 0.445 RNAfold: 0.346 Sensitivity CentroidFold: 0.378 RNAfold: 0.350 Positive Predictive Value CentroidFold: 0.525 RNAfold: 0.343 Number of pairs reference - predicted secondary structure: 215 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Contrafold vs RNAfold Matthews Correlation Coefficient Contrafold: 0.466 RNAfold: 0.369 Sensitivity Contrafold: 0.447 RNAfold: 0.373 Positive Predictive Value Contrafold: 0.487 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	57 RSpredict(seed) vs RNAfold Matthews Correlation Coefficient RSpredict(seed): 0.532 RNAfold: 0.419 Sensitivity RSpredict(seed): 0.447 RNAfold: 0.417 Positive Predictive Value RSpredict(seed): 0.632 RNAfold: 0.422 Number of pairs reference - predicted secondary structure: 57 Wilcoxon single-rank test P-value: 3.56938820447e-08	77 RSpredict(20) vs RNAfold Matthews Correlation Coefficient RSpredict(20): 0.464 RNAfold: 0.396 Sensitivity RSpredict(20): 0.417 RNAfold: 0.398 Positive Predictive Value RSpredict(20): 0.516 RNAfold: 0.394 Number of pairs reference - predicted secondary structure: 77 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Sfold vs RNAfold Matthews Correlation Coefficient Sfold: 0.414 RNAfold: 0.369 Sensitivity Sfold: 0.366 RNAfold: 0.373 Positive Predictive Value Sfold: 0.469 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 MaxExpect vs RNAfold Matthews Correlation Coefficient MaxExpect: 0.407 RNAfold: 0.369 Sensitivity MaxExpect: 0.396 RNAfold: 0.373 Positive Predictive Value MaxExpect: 0.418 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 ProbKnot vs RNAfold Matthews Correlation Coefficient ProbKnot: 0.400 RNAfold: 0.369 Sensitivity ProbKnot: 0.396 RNAfold: 0.373 Positive Predictive Value ProbKnot: 0.403 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 UNAFold vs RNAfold Matthews Correlation Coefficient UNAFold: 0.379 RNAfold: 0.369 Sensitivity UNAFold: 0.379 RNAfold: 0.373 Positive Predictive Value UNAFold: 0.379 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 CRWrnafold vs RNAfold Matthews Correlation Coefficient CRWrnafold: 0.356 RNAfold: 0.341 Sensitivity CRWrnafold: 0.359 RNAfold: 0.341 Positive Predictive Value CRWrnafold: 0.353 RNAfold: 0.341 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	220 Afold vs RNAfold Matthews Correlation Coefficient Afold: 0.371 RNAfold: 0.362 Sensitivity Afold: 0.371 RNAfold: 0.364 Positive Predictive Value Afold: 0.370 RNAfold: 0.360 Number of pairs reference - predicted secondary structure: 220 Wilcoxon single-rank test P-value: 3.56938820447e-08	273 Fold vs RNAfold Matthews Correlation Coefficient Fold: 0.375 RNAfold: 0.369 Sensitivity Fold: 0.381 RNAfold: 0.373 Positive Predictive Value Fold: 0.369 RNAfold: 0.366 Number of pairs reference - predicted secondary structure: 273 Wilcoxon single-rank test P-value: 3.56938820447e-08		= RNAfold vs PknotsRG Matthews Correlation Coefficient RNAfold: 0.364 PknotsRG: 0.363 Sensitivity RNAfold: 0.364 PknotsRG: 0.363 Positive Predictive Value RNAfold: 0.364 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 0.00985919189012	? Murlet(seed) vs RNAfold Matthews Correlation Coefficient Murlet(seed): 0.642 RNAfold: 0.372 Sensitivity Murlet(seed): 0.606 RNAfold: 0.369 Positive Predictive Value Murlet(seed): 0.681 RNAfold: 0.376 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNAfold vs McQFold Matthews Correlation Coefficient RNAfold: 0.350 McQFold: 0.301 Sensitivity RNAfold: 0.348 McQFold: 0.283 Positive Predictive Value RNAfold: 0.351 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs RNAfold Matthews Correlation Coefficient NanoFolder: N/A RNAfold: N/A Sensitivity NanoFolder: N/A RNAfold: N/A Positive Predictive Value NanoFolder: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs RNAfold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A RNAfold: N/A Sensitivity CentroidHomfold‑LAST: N/A RNAfold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs RNAfold Matthews Correlation Coefficient CMfinder(seed): N/A RNAfold: N/A Sensitivity CMfinder(seed): N/A RNAfold: N/A Positive Predictive Value CMfinder(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs RNAfold Matthews Correlation Coefficient RNAshapes: N/A RNAfold: N/A Sensitivity RNAshapes: N/A RNAfold: N/A Positive Predictive Value RNAshapes: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs RNAfold Matthews Correlation Coefficient Multilign(seed): N/A RNAfold: N/A Sensitivity Multilign(seed): N/A RNAfold: N/A Positive Predictive Value Multilign(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs Multilign(20) Matthews Correlation Coefficient RNAfold: N/A Multilign(20): N/A Sensitivity RNAfold: N/A Multilign(20): N/A Positive Predictive Value RNAfold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAfold Matthews Correlation Coefficient TurboFold(20): N/A RNAfold: N/A Sensitivity TurboFold(20): N/A RNAfold: N/A Positive Predictive Value TurboFold(20): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs Mastr(seed) Matthews Correlation Coefficient RNAfold: 0.385 Mastr(seed): 0.000 Sensitivity RNAfold: 0.389 Mastr(seed): 0.000 Positive Predictive Value RNAfold: 0.381 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	? RNAsubopt vs RNAfold Matthews Correlation Coefficient RNAsubopt: N/A RNAfold: N/A Sensitivity RNAsubopt: N/A RNAfold: N/A Positive Predictive Value RNAsubopt: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNAfold Matthews Correlation Coefficient HotKnots: N/A RNAfold: N/A Sensitivity HotKnots: N/A RNAfold: N/A Positive Predictive Value HotKnots: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNAfold Matthews Correlation Coefficient Pknots: N/A RNAfold: N/A Sensitivity Pknots: N/A RNAfold: N/A Positive Predictive Value Pknots: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAfold Matthews Correlation Coefficient Cylofold: N/A RNAfold: N/A Sensitivity Cylofold: N/A RNAfold: N/A Positive Predictive Value Cylofold: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs MCFold Matthews Correlation Coefficient RNAfold: N/A MCFold: N/A Sensitivity RNAfold: N/A MCFold: N/A Positive Predictive Value RNAfold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAfold Matthews Correlation Coefficient Vsfold5: N/A RNAfold: N/A Sensitivity Vsfold5: N/A RNAfold: N/A Positive Predictive Value Vsfold5: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNAfold Matthews Correlation Coefficient Vsfold4: N/A RNAfold: N/A Sensitivity Vsfold4: N/A RNAfold: N/A Positive Predictive Value Vsfold4: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs Carnac(seed) Matthews Correlation Coefficient RNAfold: 0.777 Carnac(seed): 0.729 Sensitivity RNAfold: 0.764 Carnac(seed): 0.570 Positive Predictive Value RNAfold: 0.790 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? RNASampler(20) vs RNAfold Matthews Correlation Coefficient RNASampler(20): N/A RNAfold: N/A Sensitivity RNASampler(20): N/A RNAfold: N/A Positive Predictive Value RNASampler(20): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs CMfinder(20) Matthews Correlation Coefficient RNAfold: N/A CMfinder(20): N/A Sensitivity RNAfold: N/A CMfinder(20): N/A Positive Predictive Value RNAfold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNAfold Matthews Correlation Coefficient PPfold(seed): N/A RNAfold: N/A Sensitivity PPfold(seed): N/A RNAfold: N/A Positive Predictive Value PPfold(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAfold Matthews Correlation Coefficient RDfolder: N/A RNAfold: N/A Sensitivity RDfolder: N/A RNAfold: N/A Positive Predictive Value RDfolder: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAfold Matthews Correlation Coefficient TurboFold(seed): N/A RNAfold: N/A Sensitivity TurboFold(seed): N/A RNAfold: N/A Positive Predictive Value TurboFold(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAfold Matthews Correlation Coefficient RNASampler(seed): N/A RNAfold: N/A Sensitivity RNASampler(seed): N/A RNAfold: N/A Positive Predictive Value RNASampler(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAfold vs RNASLOpt Matthews Correlation Coefficient RNAfold: 0.386 RNASLOpt: 0.000 Sensitivity RNAfold: 0.358 RNASLOpt: 0.000 Positive Predictive Value RNAfold: 0.417 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs RNAfold Matthews Correlation Coefficient Murlet(20): 0.621 RNAfold: 0.386 Sensitivity Murlet(20): 0.544 RNAfold: 0.388 Positive Predictive Value Murlet(20): 0.708 RNAfold: 0.385 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	? Alterna vs RNAfold Matthews Correlation Coefficient Alterna: N/A RNAfold: N/A Sensitivity Alterna: N/A RNAfold: N/A Positive Predictive Value Alterna: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNAfold Matthews Correlation Coefficient PPfold(20): 0.746 RNAfold: 0.424 Sensitivity PPfold(20): 0.681 RNAfold: 0.420 Positive Predictive Value PPfold(20): 0.818 RNAfold: 0.428 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	+ RNAfold vs RNAwolf Matthews Correlation Coefficient RNAfold: 0.324 RNAwolf: 0.199 Sensitivity RNAfold: 0.324 RNAwolf: 0.212 Positive Predictive Value RNAfold: 0.324 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	+ RNAfold vs Mastr(20) Matthews Correlation Coefficient RNAfold: 0.302 Mastr(20): 0.000 Sensitivity RNAfold: 0.311 Mastr(20): 0.000 Positive Predictive Value RNAfold: 0.293 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08
PknotsRG	52 PETfold_pre2.0(seed) vs PknotsRG Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.832 PknotsRG: 0.435 Sensitivity PETfold_pre2.0(seed): 0.809 PknotsRG: 0.430 Positive Predictive Value PETfold_pre2.0(seed): 0.855 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 ContextFold vs PknotsRG Matthews Correlation Coefficient ContextFold: 0.741 PknotsRG: 0.363 Sensitivity ContextFold: 0.696 PknotsRG: 0.363 Positive Predictive Value ContextFold: 0.789 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 CentroidAlifold(seed) vs PknotsRG Matthews Correlation Coefficient CentroidAlifold(seed): 0.841 PknotsRG: 0.435 Sensitivity CentroidAlifold(seed): 0.775 PknotsRG: 0.430 Positive Predictive Value CentroidAlifold(seed): 0.912 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 PETfold_pre2.0(20) vs PknotsRG Matthews Correlation Coefficient PETfold_pre2.0(20): 0.831 PknotsRG: 0.450 Sensitivity PETfold_pre2.0(20): 0.812 PknotsRG: 0.444 Positive Predictive Value PETfold_pre2.0(20): 0.851 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 CentroidAlifold(20) vs PknotsRG Matthews Correlation Coefficient CentroidAlifold(20): 0.841 PknotsRG: 0.450 Sensitivity CentroidAlifold(20): 0.772 PknotsRG: 0.444 Positive Predictive Value CentroidAlifold(20): 0.917 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 RNAalifold(seed) vs PknotsRG Matthews Correlation Coefficient RNAalifold(seed): 0.821 PknotsRG: 0.435 Sensitivity RNAalifold(seed): 0.767 PknotsRG: 0.430 Positive Predictive Value RNAalifold(seed): 0.877 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 RNAalifold(20) vs PknotsRG Matthews Correlation Coefficient RNAalifold(20): 0.820 PknotsRG: 0.450 Sensitivity RNAalifold(20): 0.778 PknotsRG: 0.444 Positive Predictive Value RNAalifold(20): 0.865 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	52 MXScarna(seed) vs PknotsRG Matthews Correlation Coefficient MXScarna(seed): 0.702 PknotsRG: 0.435 Sensitivity MXScarna(seed): 0.626 PknotsRG: 0.430 Positive Predictive Value MXScarna(seed): 0.788 PknotsRG: 0.441 Number of pairs reference - predicted secondary structure: 52 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 MXScarna(20) vs PknotsRG Matthews Correlation Coefficient MXScarna(20): 0.696 PknotsRG: 0.450 Sensitivity MXScarna(20): 0.633 PknotsRG: 0.444 Positive Predictive Value MXScarna(20): 0.764 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 Carnac(20) vs PknotsRG Matthews Correlation Coefficient Carnac(20): 0.622 PknotsRG: 0.450 Sensitivity Carnac(20): 0.420 PknotsRG: 0.444 Positive Predictive Value Carnac(20): 0.922 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 IPknot vs PknotsRG Matthews Correlation Coefficient IPknot: 0.504 PknotsRG: 0.363 Sensitivity IPknot: 0.422 PknotsRG: 0.363 Positive Predictive Value IPknot: 0.603 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 CentroidFold vs PknotsRG Matthews Correlation Coefficient CentroidFold: 0.469 PknotsRG: 0.363 Sensitivity CentroidFold: 0.394 PknotsRG: 0.363 Positive Predictive Value CentroidFold: 0.558 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 Contrafold vs PknotsRG Matthews Correlation Coefficient Contrafold: 0.461 PknotsRG: 0.363 Sensitivity Contrafold: 0.435 PknotsRG: 0.363 Positive Predictive Value Contrafold: 0.489 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	45 RSpredict(seed) vs PknotsRG Matthews Correlation Coefficient RSpredict(seed): 0.631 PknotsRG: 0.439 Sensitivity RSpredict(seed): 0.541 PknotsRG: 0.434 Positive Predictive Value RSpredict(seed): 0.737 PknotsRG: 0.445 Number of pairs reference - predicted secondary structure: 45 Wilcoxon single-rank test P-value: 3.56938820447e-08	46 RSpredict(20) vs PknotsRG Matthews Correlation Coefficient RSpredict(20): 0.686 PknotsRG: 0.450 Sensitivity RSpredict(20): 0.621 PknotsRG: 0.444 Positive Predictive Value RSpredict(20): 0.759 PknotsRG: 0.456 Number of pairs reference - predicted secondary structure: 46 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 Sfold vs PknotsRG Matthews Correlation Coefficient Sfold: 0.419 PknotsRG: 0.363 Sensitivity Sfold: 0.367 PknotsRG: 0.363 Positive Predictive Value Sfold: 0.481 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 MaxExpect vs PknotsRG Matthews Correlation Coefficient MaxExpect: 0.397 PknotsRG: 0.363 Sensitivity MaxExpect: 0.382 PknotsRG: 0.363 Positive Predictive Value MaxExpect: 0.414 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 ProbKnot vs PknotsRG Matthews Correlation Coefficient ProbKnot: 0.391 PknotsRG: 0.363 Sensitivity ProbKnot: 0.384 PknotsRG: 0.363 Positive Predictive Value ProbKnot: 0.398 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 UNAFold vs PknotsRG Matthews Correlation Coefficient UNAFold: 0.382 PknotsRG: 0.363 Sensitivity UNAFold: 0.379 PknotsRG: 0.363 Positive Predictive Value UNAFold: 0.386 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.56938820447e-08	138 CRWrnafold vs PknotsRG Matthews Correlation Coefficient CRWrnafold: 0.356 PknotsRG: 0.339 Sensitivity CRWrnafold: 0.359 PknotsRG: 0.339 Positive Predictive Value CRWrnafold: 0.353 PknotsRG: 0.340 Number of pairs reference - predicted secondary structure: 138 Wilcoxon single-rank test P-value: 3.56938820447e-08	144 Afold vs PknotsRG Matthews Correlation Coefficient Afold: 0.383 PknotsRG: 0.368 Sensitivity Afold: 0.380 PknotsRG: 0.366 Positive Predictive Value Afold: 0.387 PknotsRG: 0.371 Number of pairs reference - predicted secondary structure: 144 Wilcoxon single-rank test P-value: 3.56938820447e-08	168 Fold vs PknotsRG Matthews Correlation Coefficient Fold: 0.367 PknotsRG: 0.363 Sensitivity Fold: 0.370 PknotsRG: 0.363 Positive Predictive Value Fold: 0.364 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 3.5012140095e-07	168 RNAfold vs PknotsRG Matthews Correlation Coefficient RNAfold: 0.364 PknotsRG: 0.363 Sensitivity RNAfold: 0.364 PknotsRG: 0.363 Positive Predictive Value RNAfold: 0.364 PknotsRG: 0.363 Number of pairs reference - predicted secondary structure: 168 Wilcoxon single-rank test P-value: 0.00985919189012		? Murlet(seed) vs PknotsRG Matthews Correlation Coefficient Murlet(seed): 0.642 PknotsRG: 0.337 Sensitivity Murlet(seed): 0.606 PknotsRG: 0.334 Positive Predictive Value Murlet(seed): 0.681 PknotsRG: 0.340 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? PknotsRG vs McQFold Matthews Correlation Coefficient PknotsRG: 0.383 McQFold: 0.301 Sensitivity PknotsRG: 0.378 McQFold: 0.283 Positive Predictive Value PknotsRG: 0.388 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? NanoFolder vs PknotsRG Matthews Correlation Coefficient NanoFolder: N/A PknotsRG: N/A Sensitivity NanoFolder: N/A PknotsRG: N/A Positive Predictive Value NanoFolder: N/A PknotsRG: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs CentroidHomfold‑LAST Matthews Correlation Coefficient PknotsRG: N/A CentroidHomfold‑LAST: N/A Sensitivity PknotsRG: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PknotsRG: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs CMfinder(seed) Matthews Correlation Coefficient PknotsRG: N/A CMfinder(seed): N/A Sensitivity PknotsRG: N/A CMfinder(seed): N/A Positive Predictive Value PknotsRG: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs RNAshapes Matthews Correlation Coefficient PknotsRG: N/A RNAshapes: N/A Sensitivity PknotsRG: N/A RNAshapes: N/A Positive Predictive Value PknotsRG: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Multilign(seed) Matthews Correlation Coefficient PknotsRG: N/A Multilign(seed): N/A Sensitivity PknotsRG: N/A Multilign(seed): N/A Positive Predictive Value PknotsRG: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Multilign(20) Matthews Correlation Coefficient PknotsRG: N/A Multilign(20): N/A Sensitivity PknotsRG: N/A Multilign(20): N/A Positive Predictive Value PknotsRG: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs TurboFold(20) Matthews Correlation Coefficient PknotsRG: N/A TurboFold(20): N/A Sensitivity PknotsRG: N/A TurboFold(20): N/A Positive Predictive Value PknotsRG: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Mastr(seed) Matthews Correlation Coefficient PknotsRG: 0.517 Mastr(seed): 0.000 Sensitivity PknotsRG: 0.517 Mastr(seed): 0.000 Positive Predictive Value PknotsRG: 0.518 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? PknotsRG vs RNAsubopt Matthews Correlation Coefficient PknotsRG: N/A RNAsubopt: N/A Sensitivity PknotsRG: N/A RNAsubopt: N/A Positive Predictive Value PknotsRG: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs HotKnots Matthews Correlation Coefficient PknotsRG: N/A HotKnots: N/A Sensitivity PknotsRG: N/A HotKnots: N/A Positive Predictive Value PknotsRG: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Pknots Matthews Correlation Coefficient PknotsRG: N/A Pknots: N/A Sensitivity PknotsRG: N/A Pknots: N/A Positive Predictive Value PknotsRG: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Cylofold Matthews Correlation Coefficient PknotsRG: N/A Cylofold: N/A Sensitivity PknotsRG: N/A Cylofold: N/A Positive Predictive Value PknotsRG: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs MCFold Matthews Correlation Coefficient PknotsRG: N/A MCFold: N/A Sensitivity PknotsRG: N/A MCFold: N/A Positive Predictive Value PknotsRG: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Vsfold5 Matthews Correlation Coefficient PknotsRG: N/A Vsfold5: N/A Sensitivity PknotsRG: N/A Vsfold5: N/A Positive Predictive Value PknotsRG: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Vsfold4 Matthews Correlation Coefficient PknotsRG: N/A Vsfold4: N/A Sensitivity PknotsRG: N/A Vsfold4: N/A Positive Predictive Value PknotsRG: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs Carnac(seed) Matthews Correlation Coefficient PknotsRG: 0.774 Carnac(seed): 0.729 Sensitivity PknotsRG: 0.760 Carnac(seed): 0.570 Positive Predictive Value PknotsRG: 0.789 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? PknotsRG vs RNASampler(20) Matthews Correlation Coefficient PknotsRG: N/A RNASampler(20): N/A Sensitivity PknotsRG: N/A RNASampler(20): N/A Positive Predictive Value PknotsRG: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs CMfinder(20) Matthews Correlation Coefficient PknotsRG: N/A CMfinder(20): N/A Sensitivity PknotsRG: N/A CMfinder(20): N/A Positive Predictive Value PknotsRG: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs PPfold(seed) Matthews Correlation Coefficient PknotsRG: N/A PPfold(seed): N/A Sensitivity PknotsRG: N/A PPfold(seed): N/A Positive Predictive Value PknotsRG: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs RDfolder Matthews Correlation Coefficient PknotsRG: N/A RDfolder: N/A Sensitivity PknotsRG: N/A RDfolder: N/A Positive Predictive Value PknotsRG: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs TurboFold(seed) Matthews Correlation Coefficient PknotsRG: N/A TurboFold(seed): N/A Sensitivity PknotsRG: N/A TurboFold(seed): N/A Positive Predictive Value PknotsRG: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs RNASampler(seed) Matthews Correlation Coefficient PknotsRG: N/A RNASampler(seed): N/A Sensitivity PknotsRG: N/A RNASampler(seed): N/A Positive Predictive Value PknotsRG: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PknotsRG vs RNASLOpt Matthews Correlation Coefficient PknotsRG: 0.399 RNASLOpt: 0.000 Sensitivity PknotsRG: 0.369 RNASLOpt: 0.000 Positive Predictive Value PknotsRG: 0.432 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Murlet(20) vs PknotsRG Matthews Correlation Coefficient Murlet(20): 0.758 PknotsRG: 0.438 Sensitivity Murlet(20): 0.683 PknotsRG: 0.434 Positive Predictive Value Murlet(20): 0.842 PknotsRG: 0.443 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	? PknotsRG vs Alterna Matthews Correlation Coefficient PknotsRG: N/A Alterna: N/A Sensitivity PknotsRG: N/A Alterna: N/A Positive Predictive Value PknotsRG: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs PknotsRG Matthews Correlation Coefficient PPfold(20): 0.820 PknotsRG: 0.444 Sensitivity PPfold(20): 0.766 PknotsRG: 0.432 Positive Predictive Value PPfold(20): 0.879 PknotsRG: 0.457 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	+ PknotsRG vs RNAwolf Matthews Correlation Coefficient PknotsRG: 0.328 RNAwolf: 0.199 Sensitivity PknotsRG: 0.327 RNAwolf: 0.212 Positive Predictive Value PknotsRG: 0.329 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	? PknotsRG vs Mastr(20) Matthews Correlation Coefficient PknotsRG: 0.243 Mastr(20): 0.000 Sensitivity PknotsRG: 0.240 Mastr(20): 0.000 Positive Predictive Value PknotsRG: 0.247 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0
Murlet(seed)	1 PETfold_pre2.0(seed) vs Murlet(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.868 Murlet(seed): 0.642 Sensitivity PETfold_pre2.0(seed): 0.846 Murlet(seed): 0.606 Positive Predictive Value PETfold_pre2.0(seed): 0.891 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 ContextFold vs Murlet(seed) Matthews Correlation Coefficient ContextFold: 0.818 Murlet(seed): 0.642 Sensitivity ContextFold: 0.756 Murlet(seed): 0.606 Positive Predictive Value ContextFold: 0.886 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CentroidAlifold(seed) vs Murlet(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.863 Murlet(seed): 0.642 Sensitivity CentroidAlifold(seed): 0.809 Murlet(seed): 0.606 Positive Predictive Value CentroidAlifold(seed): 0.921 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 PETfold_pre2.0(20) vs Murlet(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Murlet(seed): N/A Sensitivity PETfold_pre2.0(20): N/A Murlet(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs Murlet(seed) Matthews Correlation Coefficient CentroidAlifold(20): N/A Murlet(seed): N/A Sensitivity CentroidAlifold(20): N/A Murlet(seed): N/A Positive Predictive Value CentroidAlifold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 RNAalifold(seed) vs Murlet(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.833 Murlet(seed): 0.642 Sensitivity RNAalifold(seed): 0.793 Murlet(seed): 0.606 Positive Predictive Value RNAalifold(seed): 0.875 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 RNAalifold(20) vs Murlet(seed) Matthews Correlation Coefficient RNAalifold(20): N/A Murlet(seed): N/A Sensitivity RNAalifold(20): N/A Murlet(seed): N/A Positive Predictive Value RNAalifold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 MXScarna(seed) vs Murlet(seed) Matthews Correlation Coefficient MXScarna(seed): 0.729 Murlet(seed): 0.642 Sensitivity MXScarna(seed): 0.677 Murlet(seed): 0.606 Positive Predictive Value MXScarna(seed): 0.784 Murlet(seed): 0.681 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Murlet(seed) vs MXScarna(20) Matthews Correlation Coefficient Murlet(seed): N/A MXScarna(20): N/A Sensitivity Murlet(seed): N/A MXScarna(20): N/A Positive Predictive Value Murlet(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs Murlet(seed) Matthews Correlation Coefficient Carnac(20): N/A Murlet(seed): N/A Sensitivity Carnac(20): N/A Murlet(seed): N/A Positive Predictive Value Carnac(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 Murlet(seed) vs IPknot Matthews Correlation Coefficient Murlet(seed): 0.642 IPknot: 0.499 Sensitivity Murlet(seed): 0.606 IPknot: 0.419 Positive Predictive Value Murlet(seed): 0.681 IPknot: 0.595 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs CentroidFold Matthews Correlation Coefficient Murlet(seed): 0.642 CentroidFold: 0.460 Sensitivity Murlet(seed): 0.606 CentroidFold: 0.406 Positive Predictive Value Murlet(seed): 0.681 CentroidFold: 0.522 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs Contrafold Matthews Correlation Coefficient Murlet(seed): 0.642 Contrafold: 0.458 Sensitivity Murlet(seed): 0.606 Contrafold: 0.435 Positive Predictive Value Murlet(seed): 0.681 Contrafold: 0.482 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs RSpredict(seed) Matthews Correlation Coefficient Murlet(seed): 0.642 RSpredict(seed): 0.525 Sensitivity Murlet(seed): 0.606 RSpredict(seed): 0.408 Positive Predictive Value Murlet(seed): 0.681 RSpredict(seed): 0.676 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 RSpredict(20) vs Murlet(seed) Matthews Correlation Coefficient RSpredict(20): N/A Murlet(seed): N/A Sensitivity RSpredict(20): N/A Murlet(seed): N/A Positive Predictive Value RSpredict(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 Murlet(seed) vs Sfold Matthews Correlation Coefficient Murlet(seed): 0.642 Sfold: 0.372 Sensitivity Murlet(seed): 0.606 Sfold: 0.339 Positive Predictive Value Murlet(seed): 0.681 Sfold: 0.408 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs MaxExpect Matthews Correlation Coefficient Murlet(seed): 0.642 MaxExpect: 0.368 Sensitivity Murlet(seed): 0.606 MaxExpect: 0.355 Positive Predictive Value Murlet(seed): 0.681 MaxExpect: 0.382 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs ProbKnot Matthews Correlation Coefficient Murlet(seed): 0.642 ProbKnot: 0.369 Sensitivity Murlet(seed): 0.606 ProbKnot: 0.364 Positive Predictive Value Murlet(seed): 0.681 ProbKnot: 0.375 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs UNAFold Matthews Correlation Coefficient Murlet(seed): 0.642 UNAFold: 0.351 Sensitivity Murlet(seed): 0.606 UNAFold: 0.348 Positive Predictive Value Murlet(seed): 0.681 UNAFold: 0.354 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs CRWrnafold Matthews Correlation Coefficient Murlet(seed): 0.642 CRWrnafold: 0.373 Sensitivity Murlet(seed): 0.606 CRWrnafold: 0.364 Positive Predictive Value Murlet(seed): 0.681 CRWrnafold: 0.383 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs Afold Matthews Correlation Coefficient Murlet(seed): 0.642 Afold: 0.370 Sensitivity Murlet(seed): 0.606 Afold: 0.369 Positive Predictive Value Murlet(seed): 0.681 Afold: 0.371 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs Fold Matthews Correlation Coefficient Murlet(seed): 0.642 Fold: 0.372 Sensitivity Murlet(seed): 0.606 Fold: 0.364 Positive Predictive Value Murlet(seed): 0.681 Fold: 0.381 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs RNAfold Matthews Correlation Coefficient Murlet(seed): 0.642 RNAfold: 0.372 Sensitivity Murlet(seed): 0.606 RNAfold: 0.369 Positive Predictive Value Murlet(seed): 0.681 RNAfold: 0.376 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Murlet(seed) vs PknotsRG Matthews Correlation Coefficient Murlet(seed): 0.642 PknotsRG: 0.337 Sensitivity Murlet(seed): 0.606 PknotsRG: 0.334 Positive Predictive Value Murlet(seed): 0.681 PknotsRG: 0.340 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0		? McQFold vs Murlet(seed) Matthews Correlation Coefficient McQFold: N/A Murlet(seed): N/A Sensitivity McQFold: N/A Murlet(seed): N/A Positive Predictive Value McQFold: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Murlet(seed) Matthews Correlation Coefficient NanoFolder: N/A Murlet(seed): N/A Sensitivity NanoFolder: N/A Murlet(seed): N/A Positive Predictive Value NanoFolder: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Murlet(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Murlet(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Murlet(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Murlet(seed) Matthews Correlation Coefficient CMfinder(seed): N/A Murlet(seed): N/A Sensitivity CMfinder(seed): N/A Murlet(seed): N/A Positive Predictive Value CMfinder(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs RNAshapes Matthews Correlation Coefficient Murlet(seed): N/A RNAshapes: N/A Sensitivity Murlet(seed): N/A RNAshapes: N/A Positive Predictive Value Murlet(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Murlet(seed) Matthews Correlation Coefficient Multilign(seed): N/A Murlet(seed): N/A Sensitivity Multilign(seed): N/A Murlet(seed): N/A Positive Predictive Value Multilign(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs Multilign(20) Matthews Correlation Coefficient Murlet(seed): N/A Multilign(20): N/A Sensitivity Murlet(seed): N/A Multilign(20): N/A Positive Predictive Value Murlet(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Murlet(seed) Matthews Correlation Coefficient TurboFold(20): N/A Murlet(seed): N/A Sensitivity TurboFold(20): N/A Murlet(seed): N/A Positive Predictive Value TurboFold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Murlet(seed) Matthews Correlation Coefficient Mastr(seed): N/A Murlet(seed): N/A Sensitivity Mastr(seed): N/A Murlet(seed): N/A Positive Predictive Value Mastr(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs RNAsubopt Matthews Correlation Coefficient Murlet(seed): N/A RNAsubopt: N/A Sensitivity Murlet(seed): N/A RNAsubopt: N/A Positive Predictive Value Murlet(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Murlet(seed) Matthews Correlation Coefficient HotKnots: N/A Murlet(seed): N/A Sensitivity HotKnots: N/A Murlet(seed): N/A Positive Predictive Value HotKnots: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Murlet(seed) Matthews Correlation Coefficient Pknots: N/A Murlet(seed): N/A Sensitivity Pknots: N/A Murlet(seed): N/A Positive Predictive Value Pknots: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Murlet(seed) Matthews Correlation Coefficient Cylofold: N/A Murlet(seed): N/A Sensitivity Cylofold: N/A Murlet(seed): N/A Positive Predictive Value Cylofold: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs MCFold Matthews Correlation Coefficient Murlet(seed): N/A MCFold: N/A Sensitivity Murlet(seed): N/A MCFold: N/A Positive Predictive Value Murlet(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Murlet(seed) Matthews Correlation Coefficient Vsfold5: N/A Murlet(seed): N/A Sensitivity Vsfold5: N/A Murlet(seed): N/A Positive Predictive Value Vsfold5: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Murlet(seed) Matthews Correlation Coefficient Vsfold4: N/A Murlet(seed): N/A Sensitivity Vsfold4: N/A Murlet(seed): N/A Positive Predictive Value Vsfold4: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs Carnac(seed) Matthews Correlation Coefficient Murlet(seed): N/A Carnac(seed): N/A Sensitivity Murlet(seed): N/A Carnac(seed): N/A Positive Predictive Value Murlet(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Murlet(seed) Matthews Correlation Coefficient RNASampler(20): N/A Murlet(seed): N/A Sensitivity RNASampler(20): N/A Murlet(seed): N/A Positive Predictive Value RNASampler(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs CMfinder(20) Matthews Correlation Coefficient Murlet(seed): N/A CMfinder(20): N/A Sensitivity Murlet(seed): N/A CMfinder(20): N/A Positive Predictive Value Murlet(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Murlet(seed) Matthews Correlation Coefficient PPfold(seed): N/A Murlet(seed): N/A Sensitivity PPfold(seed): N/A Murlet(seed): N/A Positive Predictive Value PPfold(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Murlet(seed) Matthews Correlation Coefficient RDfolder: N/A Murlet(seed): N/A Sensitivity RDfolder: N/A Murlet(seed): N/A Positive Predictive Value RDfolder: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Murlet(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Murlet(seed): N/A Sensitivity TurboFold(seed): N/A Murlet(seed): N/A Positive Predictive Value TurboFold(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Murlet(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Murlet(seed): N/A Sensitivity RNASampler(seed): N/A Murlet(seed): N/A Positive Predictive Value RNASampler(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs RNASLOpt Matthews Correlation Coefficient Murlet(seed): N/A RNASLOpt: N/A Sensitivity Murlet(seed): N/A RNASLOpt: N/A Positive Predictive Value Murlet(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Murlet(seed) Matthews Correlation Coefficient Murlet(20): N/A Murlet(seed): N/A Sensitivity Murlet(20): N/A Murlet(seed): N/A Positive Predictive Value Murlet(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs Murlet(seed) Matthews Correlation Coefficient Alterna: N/A Murlet(seed): N/A Sensitivity Alterna: N/A Murlet(seed): N/A Positive Predictive Value Alterna: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Murlet(seed) Matthews Correlation Coefficient PPfold(20): N/A Murlet(seed): N/A Sensitivity PPfold(20): N/A Murlet(seed): N/A Positive Predictive Value PPfold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(seed) vs RNAwolf Matthews Correlation Coefficient Murlet(seed): N/A RNAwolf: N/A Sensitivity Murlet(seed): N/A RNAwolf: N/A Positive Predictive Value Murlet(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Murlet(seed) Matthews Correlation Coefficient Mastr(20): N/A Murlet(seed): N/A Sensitivity Mastr(20): N/A Murlet(seed): N/A Positive Predictive Value Mastr(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
McQFold	0 McQFold vs PETfold_pre2.0(seed) Matthews Correlation Coefficient McQFold: N/A PETfold_pre2.0(seed): N/A Sensitivity McQFold: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value McQFold: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	7 ContextFold vs McQFold Matthews Correlation Coefficient ContextFold: 0.614 McQFold: 0.301 Sensitivity ContextFold: 0.561 McQFold: 0.283 Positive Predictive Value ContextFold: 0.672 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	0 CentroidAlifold(seed) vs McQFold Matthews Correlation Coefficient CentroidAlifold(seed): N/A McQFold: N/A Sensitivity CentroidAlifold(seed): N/A McQFold: N/A Positive Predictive Value CentroidAlifold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs PETfold_pre2.0(20) Matthews Correlation Coefficient McQFold: N/A PETfold_pre2.0(20): N/A Sensitivity McQFold: N/A PETfold_pre2.0(20): N/A Positive Predictive Value McQFold: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs CentroidAlifold(20) Matthews Correlation Coefficient McQFold: N/A CentroidAlifold(20): N/A Sensitivity McQFold: N/A CentroidAlifold(20): N/A Positive Predictive Value McQFold: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs RNAalifold(seed) Matthews Correlation Coefficient McQFold: N/A RNAalifold(seed): N/A Sensitivity McQFold: N/A RNAalifold(seed): N/A Positive Predictive Value McQFold: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs McQFold Matthews Correlation Coefficient RNAalifold(20): N/A McQFold: N/A Sensitivity RNAalifold(20): N/A McQFold: N/A Positive Predictive Value RNAalifold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs MXScarna(seed) Matthews Correlation Coefficient McQFold: N/A MXScarna(seed): N/A Sensitivity McQFold: N/A MXScarna(seed): N/A Positive Predictive Value McQFold: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs MXScarna(20) Matthews Correlation Coefficient McQFold: N/A MXScarna(20): N/A Sensitivity McQFold: N/A MXScarna(20): N/A Positive Predictive Value McQFold: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Carnac(20) Matthews Correlation Coefficient McQFold: N/A Carnac(20): N/A Sensitivity McQFold: N/A Carnac(20): N/A Positive Predictive Value McQFold: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	7 IPknot vs McQFold Matthews Correlation Coefficient IPknot: 0.426 McQFold: 0.301 Sensitivity IPknot: 0.337 McQFold: 0.283 Positive Predictive Value IPknot: 0.539 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 CentroidFold vs McQFold Matthews Correlation Coefficient CentroidFold: 0.437 McQFold: 0.301 Sensitivity CentroidFold: 0.353 McQFold: 0.283 Positive Predictive Value CentroidFold: 0.542 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 Contrafold vs McQFold Matthews Correlation Coefficient Contrafold: 0.428 McQFold: 0.301 Sensitivity Contrafold: 0.386 McQFold: 0.283 Positive Predictive Value Contrafold: 0.476 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	0 RSpredict(seed) vs McQFold Matthews Correlation Coefficient RSpredict(seed): N/A McQFold: N/A Sensitivity RSpredict(seed): N/A McQFold: N/A Positive Predictive Value RSpredict(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs McQFold Matthews Correlation Coefficient RSpredict(20): N/A McQFold: N/A Sensitivity RSpredict(20): N/A McQFold: N/A Positive Predictive Value RSpredict(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	7 Sfold vs McQFold Matthews Correlation Coefficient Sfold: 0.401 McQFold: 0.301 Sensitivity Sfold: 0.363 McQFold: 0.283 Positive Predictive Value Sfold: 0.443 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 MaxExpect vs McQFold Matthews Correlation Coefficient MaxExpect: 0.392 McQFold: 0.301 Sensitivity MaxExpect: 0.370 McQFold: 0.283 Positive Predictive Value MaxExpect: 0.417 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 ProbKnot vs McQFold Matthews Correlation Coefficient ProbKnot: 0.385 McQFold: 0.301 Sensitivity ProbKnot: 0.376 McQFold: 0.283 Positive Predictive Value ProbKnot: 0.395 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 UNAFold vs McQFold Matthews Correlation Coefficient UNAFold: 0.384 McQFold: 0.301 Sensitivity UNAFold: 0.379 McQFold: 0.283 Positive Predictive Value UNAFold: 0.389 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 CRWrnafold vs McQFold Matthews Correlation Coefficient CRWrnafold: 0.310 McQFold: 0.301 Sensitivity CRWrnafold: 0.319 McQFold: 0.283 Positive Predictive Value CRWrnafold: 0.302 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	6 Afold vs McQFold Matthews Correlation Coefficient Afold: 0.327 McQFold: 0.275 Sensitivity Afold: 0.322 McQFold: 0.255 Positive Predictive Value Afold: 0.332 McQFold: 0.297 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	7 Fold vs McQFold Matthews Correlation Coefficient Fold: 0.386 McQFold: 0.301 Sensitivity Fold: 0.386 McQFold: 0.283 Positive Predictive Value Fold: 0.386 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 RNAfold vs McQFold Matthews Correlation Coefficient RNAfold: 0.350 McQFold: 0.301 Sensitivity RNAfold: 0.348 McQFold: 0.283 Positive Predictive Value RNAfold: 0.351 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	7 PknotsRG vs McQFold Matthews Correlation Coefficient PknotsRG: 0.383 McQFold: 0.301 Sensitivity PknotsRG: 0.378 McQFold: 0.283 Positive Predictive Value PknotsRG: 0.388 McQFold: 0.322 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	0 McQFold vs Murlet(seed) Matthews Correlation Coefficient McQFold: N/A Murlet(seed): N/A Sensitivity McQFold: N/A Murlet(seed): N/A Positive Predictive Value McQFold: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? NanoFolder vs McQFold Matthews Correlation Coefficient NanoFolder: N/A McQFold: N/A Sensitivity NanoFolder: N/A McQFold: N/A Positive Predictive Value NanoFolder: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient McQFold: N/A CentroidHomfold‑LAST: N/A Sensitivity McQFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value McQFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs CMfinder(seed) Matthews Correlation Coefficient McQFold: N/A CMfinder(seed): N/A Sensitivity McQFold: N/A CMfinder(seed): N/A Positive Predictive Value McQFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs RNAshapes Matthews Correlation Coefficient McQFold: N/A RNAshapes: N/A Sensitivity McQFold: N/A RNAshapes: N/A Positive Predictive Value McQFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Multilign(seed) Matthews Correlation Coefficient McQFold: N/A Multilign(seed): N/A Sensitivity McQFold: N/A Multilign(seed): N/A Positive Predictive Value McQFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Multilign(20) Matthews Correlation Coefficient McQFold: N/A Multilign(20): N/A Sensitivity McQFold: N/A Multilign(20): N/A Positive Predictive Value McQFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs McQFold Matthews Correlation Coefficient TurboFold(20): N/A McQFold: N/A Sensitivity TurboFold(20): N/A McQFold: N/A Positive Predictive Value TurboFold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs McQFold Matthews Correlation Coefficient Mastr(seed): N/A McQFold: N/A Sensitivity Mastr(seed): N/A McQFold: N/A Positive Predictive Value Mastr(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs RNAsubopt Matthews Correlation Coefficient McQFold: N/A RNAsubopt: N/A Sensitivity McQFold: N/A RNAsubopt: N/A Positive Predictive Value McQFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs McQFold Matthews Correlation Coefficient HotKnots: N/A McQFold: N/A Sensitivity HotKnots: N/A McQFold: N/A Positive Predictive Value HotKnots: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Pknots Matthews Correlation Coefficient McQFold: N/A Pknots: N/A Sensitivity McQFold: N/A Pknots: N/A Positive Predictive Value McQFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs McQFold Matthews Correlation Coefficient Cylofold: N/A McQFold: N/A Sensitivity Cylofold: N/A McQFold: N/A Positive Predictive Value Cylofold: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs MCFold Matthews Correlation Coefficient McQFold: N/A MCFold: N/A Sensitivity McQFold: N/A MCFold: N/A Positive Predictive Value McQFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs McQFold Matthews Correlation Coefficient Vsfold5: N/A McQFold: N/A Sensitivity Vsfold5: N/A McQFold: N/A Positive Predictive Value Vsfold5: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Vsfold4 Matthews Correlation Coefficient McQFold: N/A Vsfold4: N/A Sensitivity McQFold: N/A Vsfold4: N/A Positive Predictive Value McQFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Carnac(seed) Matthews Correlation Coefficient McQFold: N/A Carnac(seed): N/A Sensitivity McQFold: N/A Carnac(seed): N/A Positive Predictive Value McQFold: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs McQFold Matthews Correlation Coefficient RNASampler(20): N/A McQFold: N/A Sensitivity RNASampler(20): N/A McQFold: N/A Positive Predictive Value RNASampler(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs CMfinder(20) Matthews Correlation Coefficient McQFold: N/A CMfinder(20): N/A Sensitivity McQFold: N/A CMfinder(20): N/A Positive Predictive Value McQFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs McQFold Matthews Correlation Coefficient PPfold(seed): N/A McQFold: N/A Sensitivity PPfold(seed): N/A McQFold: N/A Positive Predictive Value PPfold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs McQFold Matthews Correlation Coefficient RDfolder: N/A McQFold: N/A Sensitivity RDfolder: N/A McQFold: N/A Positive Predictive Value RDfolder: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs McQFold Matthews Correlation Coefficient TurboFold(seed): N/A McQFold: N/A Sensitivity TurboFold(seed): N/A McQFold: N/A Positive Predictive Value TurboFold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs McQFold Matthews Correlation Coefficient RNASampler(seed): N/A McQFold: N/A Sensitivity RNASampler(seed): N/A McQFold: N/A Positive Predictive Value RNASampler(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs RNASLOpt Matthews Correlation Coefficient McQFold: 0.155 RNASLOpt: 0.000 Sensitivity McQFold: 0.131 RNASLOpt: 0.000 Positive Predictive Value McQFold: 0.184 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? McQFold vs Murlet(20) Matthews Correlation Coefficient McQFold: N/A Murlet(20): N/A Sensitivity McQFold: N/A Murlet(20): N/A Positive Predictive Value McQFold: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs Alterna Matthews Correlation Coefficient McQFold: N/A Alterna: N/A Sensitivity McQFold: N/A Alterna: N/A Positive Predictive Value McQFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs McQFold Matthews Correlation Coefficient PPfold(20): N/A McQFold: N/A Sensitivity PPfold(20): N/A McQFold: N/A Positive Predictive Value PPfold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? McQFold vs RNAwolf Matthews Correlation Coefficient McQFold: 0.301 RNAwolf: 0.202 Sensitivity McQFold: 0.283 RNAwolf: 0.216 Positive Predictive Value McQFold: 0.322 RNAwolf: 0.190 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	? Mastr(20) vs McQFold Matthews Correlation Coefficient Mastr(20): N/A McQFold: N/A Sensitivity Mastr(20): N/A McQFold: N/A Positive Predictive Value Mastr(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
NanoFolder	0 NanoFolder vs PETfold_pre2.0(seed) Matthews Correlation Coefficient NanoFolder: N/A PETfold_pre2.0(seed): N/A Sensitivity NanoFolder: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value NanoFolder: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs ContextFold Matthews Correlation Coefficient NanoFolder: N/A ContextFold: N/A Sensitivity NanoFolder: N/A ContextFold: N/A Positive Predictive Value NanoFolder: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CentroidAlifold(seed) Matthews Correlation Coefficient NanoFolder: N/A CentroidAlifold(seed): N/A Sensitivity NanoFolder: N/A CentroidAlifold(seed): N/A Positive Predictive Value NanoFolder: N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs PETfold_pre2.0(20) Matthews Correlation Coefficient NanoFolder: N/A PETfold_pre2.0(20): N/A Sensitivity NanoFolder: N/A PETfold_pre2.0(20): N/A Positive Predictive Value NanoFolder: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CentroidAlifold(20) Matthews Correlation Coefficient NanoFolder: N/A CentroidAlifold(20): N/A Sensitivity NanoFolder: N/A CentroidAlifold(20): N/A Positive Predictive Value NanoFolder: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNAalifold(seed) Matthews Correlation Coefficient NanoFolder: N/A RNAalifold(seed): N/A Sensitivity NanoFolder: N/A RNAalifold(seed): N/A Positive Predictive Value NanoFolder: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNAalifold(20) Matthews Correlation Coefficient NanoFolder: N/A RNAalifold(20): N/A Sensitivity NanoFolder: N/A RNAalifold(20): N/A Positive Predictive Value NanoFolder: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs MXScarna(seed) Matthews Correlation Coefficient NanoFolder: N/A MXScarna(seed): N/A Sensitivity NanoFolder: N/A MXScarna(seed): N/A Positive Predictive Value NanoFolder: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs MXScarna(20) Matthews Correlation Coefficient NanoFolder: N/A MXScarna(20): N/A Sensitivity NanoFolder: N/A MXScarna(20): N/A Positive Predictive Value NanoFolder: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Carnac(20) Matthews Correlation Coefficient NanoFolder: N/A Carnac(20): N/A Sensitivity NanoFolder: N/A Carnac(20): N/A Positive Predictive Value NanoFolder: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs IPknot Matthews Correlation Coefficient NanoFolder: N/A IPknot: N/A Sensitivity NanoFolder: N/A IPknot: N/A Positive Predictive Value NanoFolder: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CentroidFold Matthews Correlation Coefficient NanoFolder: N/A CentroidFold: N/A Sensitivity NanoFolder: N/A CentroidFold: N/A Positive Predictive Value NanoFolder: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Contrafold Matthews Correlation Coefficient NanoFolder: N/A Contrafold: N/A Sensitivity NanoFolder: N/A Contrafold: N/A Positive Predictive Value NanoFolder: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RSpredict(seed) Matthews Correlation Coefficient NanoFolder: N/A RSpredict(seed): N/A Sensitivity NanoFolder: N/A RSpredict(seed): N/A Positive Predictive Value NanoFolder: N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RSpredict(20) Matthews Correlation Coefficient NanoFolder: N/A RSpredict(20): N/A Sensitivity NanoFolder: N/A RSpredict(20): N/A Positive Predictive Value NanoFolder: N/A RSpredict(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Sfold Matthews Correlation Coefficient NanoFolder: N/A Sfold: N/A Sensitivity NanoFolder: N/A Sfold: N/A Positive Predictive Value NanoFolder: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs NanoFolder Matthews Correlation Coefficient MaxExpect: N/A NanoFolder: N/A Sensitivity MaxExpect: N/A NanoFolder: N/A Positive Predictive Value MaxExpect: N/A NanoFolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs ProbKnot Matthews Correlation Coefficient NanoFolder: N/A ProbKnot: N/A Sensitivity NanoFolder: N/A ProbKnot: N/A Positive Predictive Value NanoFolder: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs UNAFold Matthews Correlation Coefficient NanoFolder: N/A UNAFold: N/A Sensitivity NanoFolder: N/A UNAFold: N/A Positive Predictive Value NanoFolder: N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CRWrnafold Matthews Correlation Coefficient NanoFolder: N/A CRWrnafold: N/A Sensitivity NanoFolder: N/A CRWrnafold: N/A Positive Predictive Value NanoFolder: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Afold Matthews Correlation Coefficient NanoFolder: N/A Afold: N/A Sensitivity NanoFolder: N/A Afold: N/A Positive Predictive Value NanoFolder: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Fold Matthews Correlation Coefficient NanoFolder: N/A Fold: N/A Sensitivity NanoFolder: N/A Fold: N/A Positive Predictive Value NanoFolder: N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNAfold Matthews Correlation Coefficient NanoFolder: N/A RNAfold: N/A Sensitivity NanoFolder: N/A RNAfold: N/A Positive Predictive Value NanoFolder: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs PknotsRG Matthews Correlation Coefficient NanoFolder: N/A PknotsRG: N/A Sensitivity NanoFolder: N/A PknotsRG: N/A Positive Predictive Value NanoFolder: N/A PknotsRG: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Murlet(seed) Matthews Correlation Coefficient NanoFolder: N/A Murlet(seed): N/A Sensitivity NanoFolder: N/A Murlet(seed): N/A Positive Predictive Value NanoFolder: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs McQFold Matthews Correlation Coefficient NanoFolder: N/A McQFold: N/A Sensitivity NanoFolder: N/A McQFold: N/A Positive Predictive Value NanoFolder: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? NanoFolder vs CentroidHomfold‑LAST Matthews Correlation Coefficient NanoFolder: N/A CentroidHomfold‑LAST: N/A Sensitivity NanoFolder: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value NanoFolder: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs CMfinder(seed) Matthews Correlation Coefficient NanoFolder: N/A CMfinder(seed): N/A Sensitivity NanoFolder: N/A CMfinder(seed): N/A Positive Predictive Value NanoFolder: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNAshapes Matthews Correlation Coefficient NanoFolder: N/A RNAshapes: N/A Sensitivity NanoFolder: N/A RNAshapes: N/A Positive Predictive Value NanoFolder: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Multilign(seed) Matthews Correlation Coefficient NanoFolder: N/A Multilign(seed): N/A Sensitivity NanoFolder: N/A Multilign(seed): N/A Positive Predictive Value NanoFolder: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Multilign(20) Matthews Correlation Coefficient NanoFolder: N/A Multilign(20): N/A Sensitivity NanoFolder: N/A Multilign(20): N/A Positive Predictive Value NanoFolder: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs TurboFold(20) Matthews Correlation Coefficient NanoFolder: N/A TurboFold(20): N/A Sensitivity NanoFolder: N/A TurboFold(20): N/A Positive Predictive Value NanoFolder: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Mastr(seed) Matthews Correlation Coefficient NanoFolder: N/A Mastr(seed): N/A Sensitivity NanoFolder: N/A Mastr(seed): N/A Positive Predictive Value NanoFolder: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNAsubopt Matthews Correlation Coefficient NanoFolder: N/A RNAsubopt: N/A Sensitivity NanoFolder: N/A RNAsubopt: N/A Positive Predictive Value NanoFolder: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs HotKnots Matthews Correlation Coefficient NanoFolder: N/A HotKnots: N/A Sensitivity NanoFolder: N/A HotKnots: N/A Positive Predictive Value NanoFolder: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Pknots Matthews Correlation Coefficient NanoFolder: N/A Pknots: N/A Sensitivity NanoFolder: N/A Pknots: N/A Positive Predictive Value NanoFolder: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Cylofold Matthews Correlation Coefficient NanoFolder: N/A Cylofold: N/A Sensitivity NanoFolder: N/A Cylofold: N/A Positive Predictive Value NanoFolder: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs MCFold Matthews Correlation Coefficient NanoFolder: N/A MCFold: N/A Sensitivity NanoFolder: N/A MCFold: N/A Positive Predictive Value NanoFolder: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Vsfold5 Matthews Correlation Coefficient NanoFolder: N/A Vsfold5: N/A Sensitivity NanoFolder: N/A Vsfold5: N/A Positive Predictive Value NanoFolder: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Vsfold4 Matthews Correlation Coefficient NanoFolder: N/A Vsfold4: N/A Sensitivity NanoFolder: N/A Vsfold4: N/A Positive Predictive Value NanoFolder: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Carnac(seed) Matthews Correlation Coefficient NanoFolder: N/A Carnac(seed): N/A Sensitivity NanoFolder: N/A Carnac(seed): N/A Positive Predictive Value NanoFolder: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNASampler(20) Matthews Correlation Coefficient NanoFolder: N/A RNASampler(20): N/A Sensitivity NanoFolder: N/A RNASampler(20): N/A Positive Predictive Value NanoFolder: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs CMfinder(20) Matthews Correlation Coefficient NanoFolder: N/A CMfinder(20): N/A Sensitivity NanoFolder: N/A CMfinder(20): N/A Positive Predictive Value NanoFolder: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs PPfold(seed) Matthews Correlation Coefficient NanoFolder: N/A PPfold(seed): N/A Sensitivity NanoFolder: N/A PPfold(seed): N/A Positive Predictive Value NanoFolder: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RDfolder Matthews Correlation Coefficient NanoFolder: N/A RDfolder: N/A Sensitivity NanoFolder: N/A RDfolder: N/A Positive Predictive Value NanoFolder: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs TurboFold(seed) Matthews Correlation Coefficient NanoFolder: N/A TurboFold(seed): N/A Sensitivity NanoFolder: N/A TurboFold(seed): N/A Positive Predictive Value NanoFolder: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNASampler(seed) Matthews Correlation Coefficient NanoFolder: N/A RNASampler(seed): N/A Sensitivity NanoFolder: N/A RNASampler(seed): N/A Positive Predictive Value NanoFolder: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNASLOpt Matthews Correlation Coefficient NanoFolder: N/A RNASLOpt: N/A Sensitivity NanoFolder: N/A RNASLOpt: N/A Positive Predictive Value NanoFolder: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Murlet(20) Matthews Correlation Coefficient NanoFolder: N/A Murlet(20): N/A Sensitivity NanoFolder: N/A Murlet(20): N/A Positive Predictive Value NanoFolder: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Alterna Matthews Correlation Coefficient NanoFolder: N/A Alterna: N/A Sensitivity NanoFolder: N/A Alterna: N/A Positive Predictive Value NanoFolder: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs PPfold(20) Matthews Correlation Coefficient NanoFolder: N/A PPfold(20): N/A Sensitivity NanoFolder: N/A PPfold(20): N/A Positive Predictive Value NanoFolder: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs RNAwolf Matthews Correlation Coefficient NanoFolder: N/A RNAwolf: N/A Sensitivity NanoFolder: N/A RNAwolf: N/A Positive Predictive Value NanoFolder: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? NanoFolder vs Mastr(20) Matthews Correlation Coefficient NanoFolder: N/A Mastr(20): N/A Sensitivity NanoFolder: N/A Mastr(20): N/A Positive Predictive Value NanoFolder: N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
CentroidHomfold‑LAST	0 CentroidHomfold‑LAST vs PETfold_pre2.0(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient ContextFold: N/A CentroidHomfold‑LAST: N/A Sensitivity ContextFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value ContextFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidAlifold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs PETfold_pre2.0(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Sensitivity CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidAlifold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAalifold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAalifold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs MXScarna(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient MXScarna(20): N/A CentroidHomfold‑LAST: N/A Sensitivity MXScarna(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value MXScarna(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Carnac(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Carnac(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Carnac(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs IPknot Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A IPknot: N/A Sensitivity CentroidHomfold‑LAST: N/A IPknot: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient CentroidFold: N/A CentroidHomfold‑LAST: N/A Sensitivity CentroidFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CentroidFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Contrafold: N/A CentroidHomfold‑LAST: N/A Sensitivity Contrafold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Contrafold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RSpredict(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RSpredict(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RSpredict(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RSpredict(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs Sfold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Sfold: N/A Sensitivity CentroidHomfold‑LAST: N/A Sfold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs CentroidHomfold‑LAST Matthews Correlation Coefficient MaxExpect: N/A CentroidHomfold‑LAST: N/A Sensitivity MaxExpect: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value MaxExpect: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs CentroidHomfold‑LAST Matthews Correlation Coefficient ProbKnot: N/A CentroidHomfold‑LAST: N/A Sensitivity ProbKnot: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value ProbKnot: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient UNAFold: N/A CentroidHomfold‑LAST: N/A Sensitivity UNAFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value UNAFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs CRWrnafold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A CRWrnafold: N/A Sensitivity CentroidHomfold‑LAST: N/A CRWrnafold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Afold: N/A CentroidHomfold‑LAST: N/A Sensitivity Afold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Afold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Fold: N/A CentroidHomfold‑LAST: N/A Sensitivity Fold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Fold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs RNAfold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A RNAfold: N/A Sensitivity CentroidHomfold‑LAST: N/A RNAfold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs CentroidHomfold‑LAST Matthews Correlation Coefficient PknotsRG: N/A CentroidHomfold‑LAST: N/A Sensitivity PknotsRG: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PknotsRG: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Murlet(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Murlet(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Murlet(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs CentroidHomfold‑LAST Matthews Correlation Coefficient McQFold: N/A CentroidHomfold‑LAST: N/A Sensitivity McQFold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value McQFold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CentroidHomfold‑LAST Matthews Correlation Coefficient NanoFolder: N/A CentroidHomfold‑LAST: N/A Sensitivity NanoFolder: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value NanoFolder: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? CMfinder(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAshapes: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAshapes: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAshapes: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Multilign(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Multilign(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Multilign(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs Multilign(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Multilign(20): N/A Sensitivity CentroidHomfold‑LAST: N/A Multilign(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient TurboFold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity TurboFold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value TurboFold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Mastr(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Mastr(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Mastr(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAsubopt: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAsubopt: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAsubopt: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CentroidHomfold‑LAST Matthews Correlation Coefficient HotKnots: N/A CentroidHomfold‑LAST: N/A Sensitivity HotKnots: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value HotKnots: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CentroidHomfold‑LAST Matthews Correlation Coefficient Pknots: N/A CentroidHomfold‑LAST: N/A Sensitivity Pknots: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Pknots: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Cylofold: N/A CentroidHomfold‑LAST: N/A Sensitivity Cylofold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Cylofold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs MCFold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A MCFold: N/A Sensitivity CentroidHomfold‑LAST: N/A MCFold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CentroidHomfold‑LAST Matthews Correlation Coefficient Vsfold5: N/A CentroidHomfold‑LAST: N/A Sensitivity Vsfold5: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Vsfold5: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CentroidHomfold‑LAST Matthews Correlation Coefficient Vsfold4: N/A CentroidHomfold‑LAST: N/A Sensitivity Vsfold4: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Vsfold4: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs Carnac(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Carnac(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A Carnac(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNASampler(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RNASampler(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNASampler(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs CMfinder(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A CMfinder(20): N/A Sensitivity CentroidHomfold‑LAST: N/A CMfinder(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient PPfold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity PPfold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PPfold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CentroidHomfold‑LAST Matthews Correlation Coefficient RDfolder: N/A CentroidHomfold‑LAST: N/A Sensitivity RDfolder: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RDfolder: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CentroidHomfold‑LAST vs RNASLOpt Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A RNASLOpt: N/A Sensitivity CentroidHomfold‑LAST: N/A RNASLOpt: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Murlet(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Murlet(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Murlet(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs CentroidHomfold‑LAST Matthews Correlation Coefficient Alterna: N/A CentroidHomfold‑LAST: N/A Sensitivity Alterna: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Alterna: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient PPfold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity PPfold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PPfold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAwolf: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAwolf: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAwolf: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Mastr(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Mastr(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Mastr(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
CMfinder(seed)	0 CMfinder(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value CMfinder(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs CMfinder(seed) Matthews Correlation Coefficient ContextFold: N/A CMfinder(seed): N/A Sensitivity ContextFold: N/A CMfinder(seed): N/A Positive Predictive Value ContextFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs CMfinder(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A CMfinder(seed): N/A Sensitivity CentroidAlifold(seed): N/A CMfinder(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs CMfinder(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A CMfinder(seed): N/A Sensitivity PETfold_pre2.0(20): N/A CMfinder(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient CMfinder(seed): N/A CentroidAlifold(20): N/A Sensitivity CMfinder(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value CMfinder(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs CMfinder(seed) Matthews Correlation Coefficient RNAalifold(seed): N/A CMfinder(seed): N/A Sensitivity RNAalifold(seed): N/A CMfinder(seed): N/A Positive Predictive Value RNAalifold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs CMfinder(seed) Matthews Correlation Coefficient RNAalifold(20): N/A CMfinder(seed): N/A Sensitivity RNAalifold(20): N/A CMfinder(seed): N/A Positive Predictive Value RNAalifold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs MXScarna(seed) Matthews Correlation Coefficient CMfinder(seed): N/A MXScarna(seed): N/A Sensitivity CMfinder(seed): N/A MXScarna(seed): N/A Positive Predictive Value CMfinder(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs MXScarna(20) Matthews Correlation Coefficient CMfinder(seed): N/A MXScarna(20): N/A Sensitivity CMfinder(seed): N/A MXScarna(20): N/A Positive Predictive Value CMfinder(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Carnac(20) Matthews Correlation Coefficient CMfinder(seed): N/A Carnac(20): N/A Sensitivity CMfinder(seed): N/A Carnac(20): N/A Positive Predictive Value CMfinder(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs IPknot Matthews Correlation Coefficient CMfinder(seed): N/A IPknot: N/A Sensitivity CMfinder(seed): N/A IPknot: N/A Positive Predictive Value CMfinder(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs CentroidFold Matthews Correlation Coefficient CMfinder(seed): N/A CentroidFold: N/A Sensitivity CMfinder(seed): N/A CentroidFold: N/A Positive Predictive Value CMfinder(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs CMfinder(seed) Matthews Correlation Coefficient Contrafold: N/A CMfinder(seed): N/A Sensitivity Contrafold: N/A CMfinder(seed): N/A Positive Predictive Value Contrafold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs CMfinder(seed) Matthews Correlation Coefficient RSpredict(seed): N/A CMfinder(seed): N/A Sensitivity RSpredict(seed): N/A CMfinder(seed): N/A Positive Predictive Value RSpredict(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs CMfinder(seed) Matthews Correlation Coefficient RSpredict(20): N/A CMfinder(seed): N/A Sensitivity RSpredict(20): N/A CMfinder(seed): N/A Positive Predictive Value RSpredict(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Sfold Matthews Correlation Coefficient CMfinder(seed): N/A Sfold: N/A Sensitivity CMfinder(seed): N/A Sfold: N/A Positive Predictive Value CMfinder(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs CMfinder(seed) Matthews Correlation Coefficient MaxExpect: N/A CMfinder(seed): N/A Sensitivity MaxExpect: N/A CMfinder(seed): N/A Positive Predictive Value MaxExpect: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs CMfinder(seed) Matthews Correlation Coefficient ProbKnot: N/A CMfinder(seed): N/A Sensitivity ProbKnot: N/A CMfinder(seed): N/A Positive Predictive Value ProbKnot: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs CMfinder(seed) Matthews Correlation Coefficient UNAFold: N/A CMfinder(seed): N/A Sensitivity UNAFold: N/A CMfinder(seed): N/A Positive Predictive Value UNAFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs CRWrnafold Matthews Correlation Coefficient CMfinder(seed): N/A CRWrnafold: N/A Sensitivity CMfinder(seed): N/A CRWrnafold: N/A Positive Predictive Value CMfinder(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Afold Matthews Correlation Coefficient CMfinder(seed): N/A Afold: N/A Sensitivity CMfinder(seed): N/A Afold: N/A Positive Predictive Value CMfinder(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs CMfinder(seed) Matthews Correlation Coefficient Fold: N/A CMfinder(seed): N/A Sensitivity Fold: N/A CMfinder(seed): N/A Positive Predictive Value Fold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs RNAfold Matthews Correlation Coefficient CMfinder(seed): N/A RNAfold: N/A Sensitivity CMfinder(seed): N/A RNAfold: N/A Positive Predictive Value CMfinder(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs CMfinder(seed) Matthews Correlation Coefficient PknotsRG: N/A CMfinder(seed): N/A Sensitivity PknotsRG: N/A CMfinder(seed): N/A Positive Predictive Value PknotsRG: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Murlet(seed) Matthews Correlation Coefficient CMfinder(seed): N/A Murlet(seed): N/A Sensitivity CMfinder(seed): N/A Murlet(seed): N/A Positive Predictive Value CMfinder(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs CMfinder(seed) Matthews Correlation Coefficient McQFold: N/A CMfinder(seed): N/A Sensitivity McQFold: N/A CMfinder(seed): N/A Positive Predictive Value McQFold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CMfinder(seed) Matthews Correlation Coefficient NanoFolder: N/A CMfinder(seed): N/A Sensitivity NanoFolder: N/A CMfinder(seed): N/A Positive Predictive Value NanoFolder: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value CMfinder(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? CMfinder(seed) vs RNAshapes Matthews Correlation Coefficient CMfinder(seed): N/A RNAshapes: N/A Sensitivity CMfinder(seed): N/A RNAshapes: N/A Positive Predictive Value CMfinder(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CMfinder(seed) Matthews Correlation Coefficient Multilign(seed): N/A CMfinder(seed): N/A Sensitivity Multilign(seed): N/A CMfinder(seed): N/A Positive Predictive Value Multilign(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Multilign(20) Matthews Correlation Coefficient CMfinder(seed): N/A Multilign(20): N/A Sensitivity CMfinder(seed): N/A Multilign(20): N/A Positive Predictive Value CMfinder(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CMfinder(seed) Matthews Correlation Coefficient TurboFold(20): N/A CMfinder(seed): N/A Sensitivity TurboFold(20): N/A CMfinder(seed): N/A Positive Predictive Value TurboFold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs CMfinder(seed) Matthews Correlation Coefficient Mastr(seed): N/A CMfinder(seed): N/A Sensitivity Mastr(seed): N/A CMfinder(seed): N/A Positive Predictive Value Mastr(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs RNAsubopt Matthews Correlation Coefficient CMfinder(seed): N/A RNAsubopt: N/A Sensitivity CMfinder(seed): N/A RNAsubopt: N/A Positive Predictive Value CMfinder(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CMfinder(seed) Matthews Correlation Coefficient HotKnots: N/A CMfinder(seed): N/A Sensitivity HotKnots: N/A CMfinder(seed): N/A Positive Predictive Value HotKnots: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CMfinder(seed) Matthews Correlation Coefficient Pknots: N/A CMfinder(seed): N/A Sensitivity Pknots: N/A CMfinder(seed): N/A Positive Predictive Value Pknots: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CMfinder(seed) Matthews Correlation Coefficient Cylofold: N/A CMfinder(seed): N/A Sensitivity Cylofold: N/A CMfinder(seed): N/A Positive Predictive Value Cylofold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs MCFold Matthews Correlation Coefficient CMfinder(seed): N/A MCFold: N/A Sensitivity CMfinder(seed): N/A MCFold: N/A Positive Predictive Value CMfinder(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CMfinder(seed) Matthews Correlation Coefficient Vsfold5: N/A CMfinder(seed): N/A Sensitivity Vsfold5: N/A CMfinder(seed): N/A Positive Predictive Value Vsfold5: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CMfinder(seed) Matthews Correlation Coefficient Vsfold4: N/A CMfinder(seed): N/A Sensitivity Vsfold4: N/A CMfinder(seed): N/A Positive Predictive Value Vsfold4: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Carnac(seed) Matthews Correlation Coefficient CMfinder(seed): N/A Carnac(seed): N/A Sensitivity CMfinder(seed): N/A Carnac(seed): N/A Positive Predictive Value CMfinder(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs CMfinder(seed) Matthews Correlation Coefficient RNASampler(20): N/A CMfinder(seed): N/A Sensitivity RNASampler(20): N/A CMfinder(seed): N/A Positive Predictive Value RNASampler(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs CMfinder(20) Matthews Correlation Coefficient CMfinder(seed): N/A CMfinder(20): N/A Sensitivity CMfinder(seed): N/A CMfinder(20): N/A Positive Predictive Value CMfinder(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs CMfinder(seed) Matthews Correlation Coefficient PPfold(seed): N/A CMfinder(seed): N/A Sensitivity PPfold(seed): N/A CMfinder(seed): N/A Positive Predictive Value PPfold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CMfinder(seed) Matthews Correlation Coefficient RDfolder: N/A CMfinder(seed): N/A Sensitivity RDfolder: N/A CMfinder(seed): N/A Positive Predictive Value RDfolder: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CMfinder(seed) Matthews Correlation Coefficient TurboFold(seed): N/A CMfinder(seed): N/A Sensitivity TurboFold(seed): N/A CMfinder(seed): N/A Positive Predictive Value TurboFold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CMfinder(seed) Matthews Correlation Coefficient RNASampler(seed): N/A CMfinder(seed): N/A Sensitivity RNASampler(seed): N/A CMfinder(seed): N/A Positive Predictive Value RNASampler(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs RNASLOpt Matthews Correlation Coefficient CMfinder(seed): N/A RNASLOpt: N/A Sensitivity CMfinder(seed): N/A RNASLOpt: N/A Positive Predictive Value CMfinder(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs CMfinder(seed) Matthews Correlation Coefficient Murlet(20): N/A CMfinder(seed): N/A Sensitivity Murlet(20): N/A CMfinder(seed): N/A Positive Predictive Value Murlet(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs Alterna Matthews Correlation Coefficient CMfinder(seed): N/A Alterna: N/A Sensitivity CMfinder(seed): N/A Alterna: N/A Positive Predictive Value CMfinder(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CMfinder(seed) Matthews Correlation Coefficient PPfold(20): N/A CMfinder(seed): N/A Sensitivity PPfold(20): N/A CMfinder(seed): N/A Positive Predictive Value PPfold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? CMfinder(seed) vs RNAwolf Matthews Correlation Coefficient CMfinder(seed): N/A RNAwolf: N/A Sensitivity CMfinder(seed): N/A RNAwolf: N/A Positive Predictive Value CMfinder(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs CMfinder(seed) Matthews Correlation Coefficient Mastr(20): N/A CMfinder(seed): N/A Sensitivity Mastr(20): N/A CMfinder(seed): N/A Positive Predictive Value Mastr(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
RNAshapes	0 PETfold_pre2.0(seed) vs RNAshapes Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAshapes: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAshapes: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs RNAshapes Matthews Correlation Coefficient ContextFold: N/A RNAshapes: N/A Sensitivity ContextFold: N/A RNAshapes: N/A Positive Predictive Value ContextFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs RNAshapes Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAshapes: N/A Sensitivity CentroidAlifold(seed): N/A RNAshapes: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs RNAshapes Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAshapes: N/A Sensitivity PETfold_pre2.0(20): N/A RNAshapes: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs RNAshapes Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAshapes: N/A Sensitivity CentroidAlifold(20): N/A RNAshapes: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs RNAshapes Matthews Correlation Coefficient RNAalifold(seed): N/A RNAshapes: N/A Sensitivity RNAalifold(seed): N/A RNAshapes: N/A Positive Predictive Value RNAalifold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs RNAshapes Matthews Correlation Coefficient RNAalifold(20): N/A RNAshapes: N/A Sensitivity RNAalifold(20): N/A RNAshapes: N/A Positive Predictive Value RNAalifold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs MXScarna(seed) Matthews Correlation Coefficient RNAshapes: N/A MXScarna(seed): N/A Sensitivity RNAshapes: N/A MXScarna(seed): N/A Positive Predictive Value RNAshapes: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs MXScarna(20) Matthews Correlation Coefficient RNAshapes: N/A MXScarna(20): N/A Sensitivity RNAshapes: N/A MXScarna(20): N/A Positive Predictive Value RNAshapes: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs RNAshapes Matthews Correlation Coefficient Carnac(20): N/A RNAshapes: N/A Sensitivity Carnac(20): N/A RNAshapes: N/A Positive Predictive Value Carnac(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs IPknot Matthews Correlation Coefficient RNAshapes: N/A IPknot: N/A Sensitivity RNAshapes: N/A IPknot: N/A Positive Predictive Value RNAshapes: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs RNAshapes Matthews Correlation Coefficient CentroidFold: N/A RNAshapes: N/A Sensitivity CentroidFold: N/A RNAshapes: N/A Positive Predictive Value CentroidFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs RNAshapes Matthews Correlation Coefficient Contrafold: N/A RNAshapes: N/A Sensitivity Contrafold: N/A RNAshapes: N/A Positive Predictive Value Contrafold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs RNAshapes Matthews Correlation Coefficient RSpredict(seed): N/A RNAshapes: N/A Sensitivity RSpredict(seed): N/A RNAshapes: N/A Positive Predictive Value RSpredict(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RNAshapes Matthews Correlation Coefficient RSpredict(20): N/A RNAshapes: N/A Sensitivity RSpredict(20): N/A RNAshapes: N/A Positive Predictive Value RSpredict(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs Sfold Matthews Correlation Coefficient RNAshapes: N/A Sfold: N/A Sensitivity RNAshapes: N/A Sfold: N/A Positive Predictive Value RNAshapes: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs RNAshapes Matthews Correlation Coefficient MaxExpect: N/A RNAshapes: N/A Sensitivity MaxExpect: N/A RNAshapes: N/A Positive Predictive Value MaxExpect: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs RNAshapes Matthews Correlation Coefficient ProbKnot: N/A RNAshapes: N/A Sensitivity ProbKnot: N/A RNAshapes: N/A Positive Predictive Value ProbKnot: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs RNAshapes Matthews Correlation Coefficient UNAFold: N/A RNAshapes: N/A Sensitivity UNAFold: N/A RNAshapes: N/A Positive Predictive Value UNAFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs CRWrnafold Matthews Correlation Coefficient RNAshapes: N/A CRWrnafold: N/A Sensitivity RNAshapes: N/A CRWrnafold: N/A Positive Predictive Value RNAshapes: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs RNAshapes Matthews Correlation Coefficient Afold: N/A RNAshapes: N/A Sensitivity Afold: N/A RNAshapes: N/A Positive Predictive Value Afold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs RNAshapes Matthews Correlation Coefficient Fold: N/A RNAshapes: N/A Sensitivity Fold: N/A RNAshapes: N/A Positive Predictive Value Fold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs RNAfold Matthews Correlation Coefficient RNAshapes: N/A RNAfold: N/A Sensitivity RNAshapes: N/A RNAfold: N/A Positive Predictive Value RNAshapes: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs RNAshapes Matthews Correlation Coefficient PknotsRG: N/A RNAshapes: N/A Sensitivity PknotsRG: N/A RNAshapes: N/A Positive Predictive Value PknotsRG: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs RNAshapes Matthews Correlation Coefficient Murlet(seed): N/A RNAshapes: N/A Sensitivity Murlet(seed): N/A RNAshapes: N/A Positive Predictive Value Murlet(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs RNAshapes Matthews Correlation Coefficient McQFold: N/A RNAshapes: N/A Sensitivity McQFold: N/A RNAshapes: N/A Positive Predictive Value McQFold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNAshapes Matthews Correlation Coefficient NanoFolder: N/A RNAshapes: N/A Sensitivity NanoFolder: N/A RNAshapes: N/A Positive Predictive Value NanoFolder: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAshapes: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAshapes: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAshapes: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs RNAshapes Matthews Correlation Coefficient CMfinder(seed): N/A RNAshapes: N/A Sensitivity CMfinder(seed): N/A RNAshapes: N/A Positive Predictive Value CMfinder(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Multilign(seed) vs RNAshapes Matthews Correlation Coefficient Multilign(seed): N/A RNAshapes: N/A Sensitivity Multilign(seed): N/A RNAshapes: N/A Positive Predictive Value Multilign(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs Multilign(20) Matthews Correlation Coefficient RNAshapes: N/A Multilign(20): N/A Sensitivity RNAshapes: N/A Multilign(20): N/A Positive Predictive Value RNAshapes: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAshapes Matthews Correlation Coefficient TurboFold(20): N/A RNAshapes: N/A Sensitivity TurboFold(20): N/A RNAshapes: N/A Positive Predictive Value TurboFold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs RNAshapes Matthews Correlation Coefficient Mastr(seed): N/A RNAshapes: N/A Sensitivity Mastr(seed): N/A RNAshapes: N/A Positive Predictive Value Mastr(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs RNAshapes Matthews Correlation Coefficient RNAsubopt: N/A RNAshapes: N/A Sensitivity RNAsubopt: N/A RNAshapes: N/A Positive Predictive Value RNAsubopt: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNAshapes Matthews Correlation Coefficient HotKnots: N/A RNAshapes: N/A Sensitivity HotKnots: N/A RNAshapes: N/A Positive Predictive Value HotKnots: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNAshapes Matthews Correlation Coefficient Pknots: N/A RNAshapes: N/A Sensitivity Pknots: N/A RNAshapes: N/A Positive Predictive Value Pknots: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAshapes Matthews Correlation Coefficient Cylofold: N/A RNAshapes: N/A Sensitivity Cylofold: N/A RNAshapes: N/A Positive Predictive Value Cylofold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs MCFold Matthews Correlation Coefficient RNAshapes: N/A MCFold: N/A Sensitivity RNAshapes: N/A MCFold: N/A Positive Predictive Value RNAshapes: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAshapes Matthews Correlation Coefficient Vsfold5: N/A RNAshapes: N/A Sensitivity Vsfold5: N/A RNAshapes: N/A Positive Predictive Value Vsfold5: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNAshapes Matthews Correlation Coefficient Vsfold4: N/A RNAshapes: N/A Sensitivity Vsfold4: N/A RNAshapes: N/A Positive Predictive Value Vsfold4: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs Carnac(seed) Matthews Correlation Coefficient RNAshapes: N/A Carnac(seed): N/A Sensitivity RNAshapes: N/A Carnac(seed): N/A Positive Predictive Value RNAshapes: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RNAshapes Matthews Correlation Coefficient RNASampler(20): N/A RNAshapes: N/A Sensitivity RNASampler(20): N/A RNAshapes: N/A Positive Predictive Value RNASampler(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs CMfinder(20) Matthews Correlation Coefficient RNAshapes: N/A CMfinder(20): N/A Sensitivity RNAshapes: N/A CMfinder(20): N/A Positive Predictive Value RNAshapes: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNAshapes Matthews Correlation Coefficient PPfold(seed): N/A RNAshapes: N/A Sensitivity PPfold(seed): N/A RNAshapes: N/A Positive Predictive Value PPfold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAshapes Matthews Correlation Coefficient RDfolder: N/A RNAshapes: N/A Sensitivity RDfolder: N/A RNAshapes: N/A Positive Predictive Value RDfolder: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAshapes Matthews Correlation Coefficient TurboFold(seed): N/A RNAshapes: N/A Sensitivity TurboFold(seed): N/A RNAshapes: N/A Positive Predictive Value TurboFold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAshapes Matthews Correlation Coefficient RNASampler(seed): N/A RNAshapes: N/A Sensitivity RNASampler(seed): N/A RNAshapes: N/A Positive Predictive Value RNASampler(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAshapes vs RNASLOpt Matthews Correlation Coefficient RNAshapes: N/A RNASLOpt: N/A Sensitivity RNAshapes: N/A RNASLOpt: N/A Positive Predictive Value RNAshapes: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs RNAshapes Matthews Correlation Coefficient Murlet(20): N/A RNAshapes: N/A Sensitivity Murlet(20): N/A RNAshapes: N/A Positive Predictive Value Murlet(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs RNAshapes Matthews Correlation Coefficient Alterna: N/A RNAshapes: N/A Sensitivity Alterna: N/A RNAshapes: N/A Positive Predictive Value Alterna: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNAshapes Matthews Correlation Coefficient PPfold(20): N/A RNAshapes: N/A Sensitivity PPfold(20): N/A RNAshapes: N/A Positive Predictive Value PPfold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs RNAshapes Matthews Correlation Coefficient RNAwolf: N/A RNAshapes: N/A Sensitivity RNAwolf: N/A RNAshapes: N/A Positive Predictive Value RNAwolf: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs RNAshapes Matthews Correlation Coefficient Mastr(20): N/A RNAshapes: N/A Sensitivity Mastr(20): N/A RNAshapes: N/A Positive Predictive Value Mastr(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Multilign(seed)	0 Multilign(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Multilign(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity Multilign(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Multilign(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs Multilign(seed) Matthews Correlation Coefficient ContextFold: N/A Multilign(seed): N/A Sensitivity ContextFold: N/A Multilign(seed): N/A Positive Predictive Value ContextFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Multilign(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A Multilign(seed): N/A Sensitivity CentroidAlifold(seed): N/A Multilign(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs Multilign(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Multilign(seed): N/A Sensitivity PETfold_pre2.0(20): N/A Multilign(seed): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient Multilign(seed): N/A CentroidAlifold(20): N/A Sensitivity Multilign(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value Multilign(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs Multilign(seed) Matthews Correlation Coefficient RNAalifold(seed): N/A Multilign(seed): N/A Sensitivity RNAalifold(seed): N/A Multilign(seed): N/A Positive Predictive Value RNAalifold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs Multilign(seed) Matthews Correlation Coefficient RNAalifold(20): N/A Multilign(seed): N/A Sensitivity RNAalifold(20): N/A Multilign(seed): N/A Positive Predictive Value RNAalifold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs MXScarna(seed) Matthews Correlation Coefficient Multilign(seed): N/A MXScarna(seed): N/A Sensitivity Multilign(seed): N/A MXScarna(seed): N/A Positive Predictive Value Multilign(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs MXScarna(20) Matthews Correlation Coefficient Multilign(seed): N/A MXScarna(20): N/A Sensitivity Multilign(seed): N/A MXScarna(20): N/A Positive Predictive Value Multilign(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Carnac(20) Matthews Correlation Coefficient Multilign(seed): N/A Carnac(20): N/A Sensitivity Multilign(seed): N/A Carnac(20): N/A Positive Predictive Value Multilign(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs IPknot Matthews Correlation Coefficient Multilign(seed): N/A IPknot: N/A Sensitivity Multilign(seed): N/A IPknot: N/A Positive Predictive Value Multilign(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CentroidFold Matthews Correlation Coefficient Multilign(seed): N/A CentroidFold: N/A Sensitivity Multilign(seed): N/A CentroidFold: N/A Positive Predictive Value Multilign(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Contrafold Matthews Correlation Coefficient Multilign(seed): N/A Contrafold: N/A Sensitivity Multilign(seed): N/A Contrafold: N/A Positive Predictive Value Multilign(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Multilign(seed) Matthews Correlation Coefficient RSpredict(seed): N/A Multilign(seed): N/A Sensitivity RSpredict(seed): N/A Multilign(seed): N/A Positive Predictive Value RSpredict(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Multilign(seed) Matthews Correlation Coefficient RSpredict(20): N/A Multilign(seed): N/A Sensitivity RSpredict(20): N/A Multilign(seed): N/A Positive Predictive Value RSpredict(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Sfold Matthews Correlation Coefficient Multilign(seed): N/A Sfold: N/A Sensitivity Multilign(seed): N/A Sfold: N/A Positive Predictive Value Multilign(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Multilign(seed) Matthews Correlation Coefficient MaxExpect: N/A Multilign(seed): N/A Sensitivity MaxExpect: N/A Multilign(seed): N/A Positive Predictive Value MaxExpect: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs Multilign(seed) Matthews Correlation Coefficient ProbKnot: N/A Multilign(seed): N/A Sensitivity ProbKnot: N/A Multilign(seed): N/A Positive Predictive Value ProbKnot: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Multilign(seed) Matthews Correlation Coefficient UNAFold: N/A Multilign(seed): N/A Sensitivity UNAFold: N/A Multilign(seed): N/A Positive Predictive Value UNAFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CRWrnafold Matthews Correlation Coefficient Multilign(seed): N/A CRWrnafold: N/A Sensitivity Multilign(seed): N/A CRWrnafold: N/A Positive Predictive Value Multilign(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Afold Matthews Correlation Coefficient Multilign(seed): N/A Afold: N/A Sensitivity Multilign(seed): N/A Afold: N/A Positive Predictive Value Multilign(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Multilign(seed) Matthews Correlation Coefficient Fold: N/A Multilign(seed): N/A Sensitivity Fold: N/A Multilign(seed): N/A Positive Predictive Value Fold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs RNAfold Matthews Correlation Coefficient Multilign(seed): N/A RNAfold: N/A Sensitivity Multilign(seed): N/A RNAfold: N/A Positive Predictive Value Multilign(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Multilign(seed) Matthews Correlation Coefficient PknotsRG: N/A Multilign(seed): N/A Sensitivity PknotsRG: N/A Multilign(seed): N/A Positive Predictive Value PknotsRG: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Murlet(seed) Matthews Correlation Coefficient Multilign(seed): N/A Murlet(seed): N/A Sensitivity Multilign(seed): N/A Murlet(seed): N/A Positive Predictive Value Multilign(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Multilign(seed) Matthews Correlation Coefficient McQFold: N/A Multilign(seed): N/A Sensitivity McQFold: N/A Multilign(seed): N/A Positive Predictive Value McQFold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Multilign(seed) Matthews Correlation Coefficient NanoFolder: N/A Multilign(seed): N/A Sensitivity NanoFolder: N/A Multilign(seed): N/A Positive Predictive Value NanoFolder: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Multilign(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Multilign(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Multilign(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CMfinder(seed) Matthews Correlation Coefficient Multilign(seed): N/A CMfinder(seed): N/A Sensitivity Multilign(seed): N/A CMfinder(seed): N/A Positive Predictive Value Multilign(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs RNAshapes Matthews Correlation Coefficient Multilign(seed): N/A RNAshapes: N/A Sensitivity Multilign(seed): N/A RNAshapes: N/A Positive Predictive Value Multilign(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Multilign(seed) vs Multilign(20) Matthews Correlation Coefficient Multilign(seed): N/A Multilign(20): N/A Sensitivity Multilign(seed): N/A Multilign(20): N/A Positive Predictive Value Multilign(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Multilign(seed) Matthews Correlation Coefficient TurboFold(20): N/A Multilign(seed): N/A Sensitivity TurboFold(20): N/A Multilign(seed): N/A Positive Predictive Value TurboFold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Multilign(seed) Matthews Correlation Coefficient Mastr(seed): N/A Multilign(seed): N/A Sensitivity Mastr(seed): N/A Multilign(seed): N/A Positive Predictive Value Mastr(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs RNAsubopt Matthews Correlation Coefficient Multilign(seed): N/A RNAsubopt: N/A Sensitivity Multilign(seed): N/A RNAsubopt: N/A Positive Predictive Value Multilign(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Multilign(seed) Matthews Correlation Coefficient HotKnots: N/A Multilign(seed): N/A Sensitivity HotKnots: N/A Multilign(seed): N/A Positive Predictive Value HotKnots: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Multilign(seed) Matthews Correlation Coefficient Pknots: N/A Multilign(seed): N/A Sensitivity Pknots: N/A Multilign(seed): N/A Positive Predictive Value Pknots: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Multilign(seed) Matthews Correlation Coefficient Cylofold: N/A Multilign(seed): N/A Sensitivity Cylofold: N/A Multilign(seed): N/A Positive Predictive Value Cylofold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs MCFold Matthews Correlation Coefficient Multilign(seed): N/A MCFold: N/A Sensitivity Multilign(seed): N/A MCFold: N/A Positive Predictive Value Multilign(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Multilign(seed) Matthews Correlation Coefficient Vsfold5: N/A Multilign(seed): N/A Sensitivity Vsfold5: N/A Multilign(seed): N/A Positive Predictive Value Vsfold5: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Multilign(seed) Matthews Correlation Coefficient Vsfold4: N/A Multilign(seed): N/A Sensitivity Vsfold4: N/A Multilign(seed): N/A Positive Predictive Value Vsfold4: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Carnac(seed) Matthews Correlation Coefficient Multilign(seed): N/A Carnac(seed): N/A Sensitivity Multilign(seed): N/A Carnac(seed): N/A Positive Predictive Value Multilign(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Multilign(seed) Matthews Correlation Coefficient RNASampler(20): N/A Multilign(seed): N/A Sensitivity RNASampler(20): N/A Multilign(seed): N/A Positive Predictive Value RNASampler(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs CMfinder(20) Matthews Correlation Coefficient Multilign(seed): N/A CMfinder(20): N/A Sensitivity Multilign(seed): N/A CMfinder(20): N/A Positive Predictive Value Multilign(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Multilign(seed) Matthews Correlation Coefficient PPfold(seed): N/A Multilign(seed): N/A Sensitivity PPfold(seed): N/A Multilign(seed): N/A Positive Predictive Value PPfold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Multilign(seed) Matthews Correlation Coefficient RDfolder: N/A Multilign(seed): N/A Sensitivity RDfolder: N/A Multilign(seed): N/A Positive Predictive Value RDfolder: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Multilign(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Multilign(seed): N/A Sensitivity TurboFold(seed): N/A Multilign(seed): N/A Positive Predictive Value TurboFold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Multilign(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Multilign(seed): N/A Sensitivity RNASampler(seed): N/A Multilign(seed): N/A Positive Predictive Value RNASampler(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs RNASLOpt Matthews Correlation Coefficient Multilign(seed): N/A RNASLOpt: N/A Sensitivity Multilign(seed): N/A RNASLOpt: N/A Positive Predictive Value Multilign(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Multilign(seed) Matthews Correlation Coefficient Murlet(20): N/A Multilign(seed): N/A Sensitivity Murlet(20): N/A Multilign(seed): N/A Positive Predictive Value Murlet(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs Alterna Matthews Correlation Coefficient Multilign(seed): N/A Alterna: N/A Sensitivity Multilign(seed): N/A Alterna: N/A Positive Predictive Value Multilign(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Multilign(seed) Matthews Correlation Coefficient PPfold(20): N/A Multilign(seed): N/A Sensitivity PPfold(20): N/A Multilign(seed): N/A Positive Predictive Value PPfold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(seed) vs RNAwolf Matthews Correlation Coefficient Multilign(seed): N/A RNAwolf: N/A Sensitivity Multilign(seed): N/A RNAwolf: N/A Positive Predictive Value Multilign(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Multilign(seed) Matthews Correlation Coefficient Mastr(20): N/A Multilign(seed): N/A Sensitivity Mastr(20): N/A Multilign(seed): N/A Positive Predictive Value Mastr(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Multilign(20)	0 PETfold_pre2.0(seed) vs Multilign(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A Multilign(20): N/A Sensitivity PETfold_pre2.0(seed): N/A Multilign(20): N/A Positive Predictive Value PETfold_pre2.0(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs Multilign(20) Matthews Correlation Coefficient ContextFold: N/A Multilign(20): N/A Sensitivity ContextFold: N/A Multilign(20): N/A Positive Predictive Value ContextFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Multilign(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A Multilign(20): N/A Sensitivity CentroidAlifold(seed): N/A Multilign(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs Multilign(20) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Multilign(20): N/A Sensitivity PETfold_pre2.0(20): N/A Multilign(20): N/A Positive Predictive Value PETfold_pre2.0(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs Multilign(20) Matthews Correlation Coefficient CentroidAlifold(20): N/A Multilign(20): N/A Sensitivity CentroidAlifold(20): N/A Multilign(20): N/A Positive Predictive Value CentroidAlifold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs Multilign(20) Matthews Correlation Coefficient RNAalifold(seed): N/A Multilign(20): N/A Sensitivity RNAalifold(seed): N/A Multilign(20): N/A Positive Predictive Value RNAalifold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs Multilign(20) Matthews Correlation Coefficient RNAalifold(20): N/A Multilign(20): N/A Sensitivity RNAalifold(20): N/A Multilign(20): N/A Positive Predictive Value RNAalifold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(seed) vs Multilign(20) Matthews Correlation Coefficient MXScarna(seed): N/A Multilign(20): N/A Sensitivity MXScarna(seed): N/A Multilign(20): N/A Positive Predictive Value MXScarna(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(20) vs Multilign(20) Matthews Correlation Coefficient MXScarna(20): N/A Multilign(20): N/A Sensitivity MXScarna(20): N/A Multilign(20): N/A Positive Predictive Value MXScarna(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs Multilign(20) Matthews Correlation Coefficient Carnac(20): N/A Multilign(20): N/A Sensitivity Carnac(20): N/A Multilign(20): N/A Positive Predictive Value Carnac(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(20) vs IPknot Matthews Correlation Coefficient Multilign(20): N/A IPknot: N/A Sensitivity Multilign(20): N/A IPknot: N/A Positive Predictive Value Multilign(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs Multilign(20) Matthews Correlation Coefficient CentroidFold: N/A Multilign(20): N/A Sensitivity CentroidFold: N/A Multilign(20): N/A Positive Predictive Value CentroidFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs Multilign(20) Matthews Correlation Coefficient Contrafold: N/A Multilign(20): N/A Sensitivity Contrafold: N/A Multilign(20): N/A Positive Predictive Value Contrafold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Multilign(20) Matthews Correlation Coefficient RSpredict(seed): N/A Multilign(20): N/A Sensitivity RSpredict(seed): N/A Multilign(20): N/A Positive Predictive Value RSpredict(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Multilign(20) Matthews Correlation Coefficient RSpredict(20): N/A Multilign(20): N/A Sensitivity RSpredict(20): N/A Multilign(20): N/A Positive Predictive Value RSpredict(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Sfold vs Multilign(20) Matthews Correlation Coefficient Sfold: N/A Multilign(20): N/A Sensitivity Sfold: N/A Multilign(20): N/A Positive Predictive Value Sfold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Multilign(20) Matthews Correlation Coefficient MaxExpect: N/A Multilign(20): N/A Sensitivity MaxExpect: N/A Multilign(20): N/A Positive Predictive Value MaxExpect: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs Multilign(20) Matthews Correlation Coefficient ProbKnot: N/A Multilign(20): N/A Sensitivity ProbKnot: N/A Multilign(20): N/A Positive Predictive Value ProbKnot: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Multilign(20) Matthews Correlation Coefficient UNAFold: N/A Multilign(20): N/A Sensitivity UNAFold: N/A Multilign(20): N/A Positive Predictive Value UNAFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CRWrnafold vs Multilign(20) Matthews Correlation Coefficient CRWrnafold: N/A Multilign(20): N/A Sensitivity CRWrnafold: N/A Multilign(20): N/A Positive Predictive Value CRWrnafold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs Multilign(20) Matthews Correlation Coefficient Afold: N/A Multilign(20): N/A Sensitivity Afold: N/A Multilign(20): N/A Positive Predictive Value Afold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Multilign(20) Matthews Correlation Coefficient Fold: N/A Multilign(20): N/A Sensitivity Fold: N/A Multilign(20): N/A Positive Predictive Value Fold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAfold vs Multilign(20) Matthews Correlation Coefficient RNAfold: N/A Multilign(20): N/A Sensitivity RNAfold: N/A Multilign(20): N/A Positive Predictive Value RNAfold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Multilign(20) Matthews Correlation Coefficient PknotsRG: N/A Multilign(20): N/A Sensitivity PknotsRG: N/A Multilign(20): N/A Positive Predictive Value PknotsRG: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs Multilign(20) Matthews Correlation Coefficient Murlet(seed): N/A Multilign(20): N/A Sensitivity Murlet(seed): N/A Multilign(20): N/A Positive Predictive Value Murlet(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Multilign(20) Matthews Correlation Coefficient McQFold: N/A Multilign(20): N/A Sensitivity McQFold: N/A Multilign(20): N/A Positive Predictive Value McQFold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Multilign(20) Matthews Correlation Coefficient NanoFolder: N/A Multilign(20): N/A Sensitivity NanoFolder: N/A Multilign(20): N/A Positive Predictive Value NanoFolder: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs Multilign(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Multilign(20): N/A Sensitivity CentroidHomfold‑LAST: N/A Multilign(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Multilign(20) Matthews Correlation Coefficient CMfinder(seed): N/A Multilign(20): N/A Sensitivity CMfinder(seed): N/A Multilign(20): N/A Positive Predictive Value CMfinder(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs Multilign(20) Matthews Correlation Coefficient RNAshapes: N/A Multilign(20): N/A Sensitivity RNAshapes: N/A Multilign(20): N/A Positive Predictive Value RNAshapes: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Multilign(20) Matthews Correlation Coefficient Multilign(seed): N/A Multilign(20): N/A Sensitivity Multilign(seed): N/A Multilign(20): N/A Positive Predictive Value Multilign(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? TurboFold(20) vs Multilign(20) Matthews Correlation Coefficient TurboFold(20): N/A Multilign(20): N/A Sensitivity TurboFold(20): N/A Multilign(20): N/A Positive Predictive Value TurboFold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Multilign(20) Matthews Correlation Coefficient Mastr(seed): N/A Multilign(20): N/A Sensitivity Mastr(seed): N/A Multilign(20): N/A Positive Predictive Value Mastr(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs Multilign(20) Matthews Correlation Coefficient RNAsubopt: N/A Multilign(20): N/A Sensitivity RNAsubopt: N/A Multilign(20): N/A Positive Predictive Value RNAsubopt: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Multilign(20) Matthews Correlation Coefficient HotKnots: N/A Multilign(20): N/A Sensitivity HotKnots: N/A Multilign(20): N/A Positive Predictive Value HotKnots: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Multilign(20) Matthews Correlation Coefficient Pknots: N/A Multilign(20): N/A Sensitivity Pknots: N/A Multilign(20): N/A Positive Predictive Value Pknots: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Multilign(20) Matthews Correlation Coefficient Cylofold: N/A Multilign(20): N/A Sensitivity Cylofold: N/A Multilign(20): N/A Positive Predictive Value Cylofold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(20) vs MCFold Matthews Correlation Coefficient Multilign(20): N/A MCFold: N/A Sensitivity Multilign(20): N/A MCFold: N/A Positive Predictive Value Multilign(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Multilign(20) Matthews Correlation Coefficient Vsfold5: N/A Multilign(20): N/A Sensitivity Vsfold5: N/A Multilign(20): N/A Positive Predictive Value Vsfold5: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Multilign(20) Matthews Correlation Coefficient Vsfold4: N/A Multilign(20): N/A Sensitivity Vsfold4: N/A Multilign(20): N/A Positive Predictive Value Vsfold4: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs Multilign(20) Matthews Correlation Coefficient Carnac(seed): N/A Multilign(20): N/A Sensitivity Carnac(seed): N/A Multilign(20): N/A Positive Predictive Value Carnac(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Multilign(20) Matthews Correlation Coefficient RNASampler(20): N/A Multilign(20): N/A Sensitivity RNASampler(20): N/A Multilign(20): N/A Positive Predictive Value RNASampler(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Multilign(20) vs CMfinder(20) Matthews Correlation Coefficient Multilign(20): N/A CMfinder(20): N/A Sensitivity Multilign(20): N/A CMfinder(20): N/A Positive Predictive Value Multilign(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Multilign(20) Matthews Correlation Coefficient PPfold(seed): N/A Multilign(20): N/A Sensitivity PPfold(seed): N/A Multilign(20): N/A Positive Predictive Value PPfold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Multilign(20) Matthews Correlation Coefficient RDfolder: N/A Multilign(20): N/A Sensitivity RDfolder: N/A Multilign(20): N/A Positive Predictive Value RDfolder: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Multilign(20) Matthews Correlation Coefficient TurboFold(seed): N/A Multilign(20): N/A Sensitivity TurboFold(seed): N/A Multilign(20): N/A Positive Predictive Value TurboFold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Multilign(20) Matthews Correlation Coefficient RNASampler(seed): N/A Multilign(20): N/A Sensitivity RNASampler(seed): N/A Multilign(20): N/A Positive Predictive Value RNASampler(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASLOpt vs Multilign(20) Matthews Correlation Coefficient RNASLOpt: N/A Multilign(20): N/A Sensitivity RNASLOpt: N/A Multilign(20): N/A Positive Predictive Value RNASLOpt: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Multilign(20) Matthews Correlation Coefficient Murlet(20): N/A Multilign(20): N/A Sensitivity Murlet(20): N/A Multilign(20): N/A Positive Predictive Value Murlet(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs Multilign(20) Matthews Correlation Coefficient Alterna: N/A Multilign(20): N/A Sensitivity Alterna: N/A Multilign(20): N/A Positive Predictive Value Alterna: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Multilign(20) Matthews Correlation Coefficient PPfold(20): N/A Multilign(20): N/A Sensitivity PPfold(20): N/A Multilign(20): N/A Positive Predictive Value PPfold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs Multilign(20) Matthews Correlation Coefficient RNAwolf: N/A Multilign(20): N/A Sensitivity RNAwolf: N/A Multilign(20): N/A Positive Predictive Value RNAwolf: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Multilign(20) Matthews Correlation Coefficient Mastr(20): N/A Multilign(20): N/A Sensitivity Mastr(20): N/A Multilign(20): N/A Positive Predictive Value Mastr(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
TurboFold(20)	0 TurboFold(20) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient TurboFold(20): N/A PETfold_pre2.0(seed): N/A Sensitivity TurboFold(20): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value TurboFold(20): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs ContextFold Matthews Correlation Coefficient TurboFold(20): N/A ContextFold: N/A Sensitivity TurboFold(20): N/A ContextFold: N/A Positive Predictive Value TurboFold(20): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs TurboFold(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A TurboFold(20): N/A Sensitivity CentroidAlifold(seed): N/A TurboFold(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs PETfold_pre2.0(20) Matthews Correlation Coefficient TurboFold(20): N/A PETfold_pre2.0(20): N/A Sensitivity TurboFold(20): N/A PETfold_pre2.0(20): N/A Positive Predictive Value TurboFold(20): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CentroidAlifold(20) Matthews Correlation Coefficient TurboFold(20): N/A CentroidAlifold(20): N/A Sensitivity TurboFold(20): N/A CentroidAlifold(20): N/A Positive Predictive Value TurboFold(20): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAalifold(seed) Matthews Correlation Coefficient TurboFold(20): N/A RNAalifold(seed): N/A Sensitivity TurboFold(20): N/A RNAalifold(seed): N/A Positive Predictive Value TurboFold(20): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAalifold(20) Matthews Correlation Coefficient TurboFold(20): N/A RNAalifold(20): N/A Sensitivity TurboFold(20): N/A RNAalifold(20): N/A Positive Predictive Value TurboFold(20): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs MXScarna(seed) Matthews Correlation Coefficient TurboFold(20): N/A MXScarna(seed): N/A Sensitivity TurboFold(20): N/A MXScarna(seed): N/A Positive Predictive Value TurboFold(20): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs MXScarna(20) Matthews Correlation Coefficient TurboFold(20): N/A MXScarna(20): N/A Sensitivity TurboFold(20): N/A MXScarna(20): N/A Positive Predictive Value TurboFold(20): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Carnac(20) Matthews Correlation Coefficient TurboFold(20): N/A Carnac(20): N/A Sensitivity TurboFold(20): N/A Carnac(20): N/A Positive Predictive Value TurboFold(20): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs IPknot Matthews Correlation Coefficient TurboFold(20): N/A IPknot: N/A Sensitivity TurboFold(20): N/A IPknot: N/A Positive Predictive Value TurboFold(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CentroidFold Matthews Correlation Coefficient TurboFold(20): N/A CentroidFold: N/A Sensitivity TurboFold(20): N/A CentroidFold: N/A Positive Predictive Value TurboFold(20): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Contrafold Matthews Correlation Coefficient TurboFold(20): N/A Contrafold: N/A Sensitivity TurboFold(20): N/A Contrafold: N/A Positive Predictive Value TurboFold(20): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs TurboFold(20) Matthews Correlation Coefficient RSpredict(seed): N/A TurboFold(20): N/A Sensitivity RSpredict(seed): N/A TurboFold(20): N/A Positive Predictive Value RSpredict(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs TurboFold(20) Matthews Correlation Coefficient RSpredict(20): N/A TurboFold(20): N/A Sensitivity RSpredict(20): N/A TurboFold(20): N/A Positive Predictive Value RSpredict(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Sfold Matthews Correlation Coefficient TurboFold(20): N/A Sfold: N/A Sensitivity TurboFold(20): N/A Sfold: N/A Positive Predictive Value TurboFold(20): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs TurboFold(20) Matthews Correlation Coefficient MaxExpect: N/A TurboFold(20): N/A Sensitivity MaxExpect: N/A TurboFold(20): N/A Positive Predictive Value MaxExpect: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs ProbKnot Matthews Correlation Coefficient TurboFold(20): N/A ProbKnot: N/A Sensitivity TurboFold(20): N/A ProbKnot: N/A Positive Predictive Value TurboFold(20): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs TurboFold(20) Matthews Correlation Coefficient UNAFold: N/A TurboFold(20): N/A Sensitivity UNAFold: N/A TurboFold(20): N/A Positive Predictive Value UNAFold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CRWrnafold Matthews Correlation Coefficient TurboFold(20): N/A CRWrnafold: N/A Sensitivity TurboFold(20): N/A CRWrnafold: N/A Positive Predictive Value TurboFold(20): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Afold Matthews Correlation Coefficient TurboFold(20): N/A Afold: N/A Sensitivity TurboFold(20): N/A Afold: N/A Positive Predictive Value TurboFold(20): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs TurboFold(20) Matthews Correlation Coefficient Fold: N/A TurboFold(20): N/A Sensitivity Fold: N/A TurboFold(20): N/A Positive Predictive Value Fold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAfold Matthews Correlation Coefficient TurboFold(20): N/A RNAfold: N/A Sensitivity TurboFold(20): N/A RNAfold: N/A Positive Predictive Value TurboFold(20): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs TurboFold(20) Matthews Correlation Coefficient PknotsRG: N/A TurboFold(20): N/A Sensitivity PknotsRG: N/A TurboFold(20): N/A Positive Predictive Value PknotsRG: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Murlet(seed) Matthews Correlation Coefficient TurboFold(20): N/A Murlet(seed): N/A Sensitivity TurboFold(20): N/A Murlet(seed): N/A Positive Predictive Value TurboFold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs McQFold Matthews Correlation Coefficient TurboFold(20): N/A McQFold: N/A Sensitivity TurboFold(20): N/A McQFold: N/A Positive Predictive Value TurboFold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs TurboFold(20) Matthews Correlation Coefficient NanoFolder: N/A TurboFold(20): N/A Sensitivity NanoFolder: N/A TurboFold(20): N/A Positive Predictive Value NanoFolder: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient TurboFold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity TurboFold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value TurboFold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CMfinder(seed) Matthews Correlation Coefficient TurboFold(20): N/A CMfinder(seed): N/A Sensitivity TurboFold(20): N/A CMfinder(seed): N/A Positive Predictive Value TurboFold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAshapes Matthews Correlation Coefficient TurboFold(20): N/A RNAshapes: N/A Sensitivity TurboFold(20): N/A RNAshapes: N/A Positive Predictive Value TurboFold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Multilign(seed) Matthews Correlation Coefficient TurboFold(20): N/A Multilign(seed): N/A Sensitivity TurboFold(20): N/A Multilign(seed): N/A Positive Predictive Value TurboFold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Multilign(20) Matthews Correlation Coefficient TurboFold(20): N/A Multilign(20): N/A Sensitivity TurboFold(20): N/A Multilign(20): N/A Positive Predictive Value TurboFold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Mastr(seed) vs TurboFold(20) Matthews Correlation Coefficient Mastr(seed): N/A TurboFold(20): N/A Sensitivity Mastr(seed): N/A TurboFold(20): N/A Positive Predictive Value Mastr(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAsubopt Matthews Correlation Coefficient TurboFold(20): N/A RNAsubopt: N/A Sensitivity TurboFold(20): N/A RNAsubopt: N/A Positive Predictive Value TurboFold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs TurboFold(20) Matthews Correlation Coefficient HotKnots: N/A TurboFold(20): N/A Sensitivity HotKnots: N/A TurboFold(20): N/A Positive Predictive Value HotKnots: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Pknots Matthews Correlation Coefficient TurboFold(20): N/A Pknots: N/A Sensitivity TurboFold(20): N/A Pknots: N/A Positive Predictive Value TurboFold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs TurboFold(20) Matthews Correlation Coefficient Cylofold: N/A TurboFold(20): N/A Sensitivity Cylofold: N/A TurboFold(20): N/A Positive Predictive Value Cylofold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs MCFold Matthews Correlation Coefficient TurboFold(20): N/A MCFold: N/A Sensitivity TurboFold(20): N/A MCFold: N/A Positive Predictive Value TurboFold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs TurboFold(20) Matthews Correlation Coefficient Vsfold5: N/A TurboFold(20): N/A Sensitivity Vsfold5: N/A TurboFold(20): N/A Positive Predictive Value Vsfold5: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Vsfold4 Matthews Correlation Coefficient TurboFold(20): N/A Vsfold4: N/A Sensitivity TurboFold(20): N/A Vsfold4: N/A Positive Predictive Value TurboFold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Carnac(seed) Matthews Correlation Coefficient TurboFold(20): N/A Carnac(seed): N/A Sensitivity TurboFold(20): N/A Carnac(seed): N/A Positive Predictive Value TurboFold(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs TurboFold(20) Matthews Correlation Coefficient RNASampler(20): N/A TurboFold(20): N/A Sensitivity RNASampler(20): N/A TurboFold(20): N/A Positive Predictive Value RNASampler(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs CMfinder(20) Matthews Correlation Coefficient TurboFold(20): N/A CMfinder(20): N/A Sensitivity TurboFold(20): N/A CMfinder(20): N/A Positive Predictive Value TurboFold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs PPfold(seed) Matthews Correlation Coefficient TurboFold(20): N/A PPfold(seed): N/A Sensitivity TurboFold(20): N/A PPfold(seed): N/A Positive Predictive Value TurboFold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs TurboFold(20) Matthews Correlation Coefficient RDfolder: N/A TurboFold(20): N/A Sensitivity RDfolder: N/A TurboFold(20): N/A Positive Predictive Value RDfolder: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs TurboFold(20) Matthews Correlation Coefficient TurboFold(seed): N/A TurboFold(20): N/A Sensitivity TurboFold(seed): N/A TurboFold(20): N/A Positive Predictive Value TurboFold(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs TurboFold(20) Matthews Correlation Coefficient RNASampler(seed): N/A TurboFold(20): N/A Sensitivity RNASampler(seed): N/A TurboFold(20): N/A Positive Predictive Value RNASampler(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNASLOpt Matthews Correlation Coefficient TurboFold(20): N/A RNASLOpt: N/A Sensitivity TurboFold(20): N/A RNASLOpt: N/A Positive Predictive Value TurboFold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Murlet(20) Matthews Correlation Coefficient TurboFold(20): N/A Murlet(20): N/A Sensitivity TurboFold(20): N/A Murlet(20): N/A Positive Predictive Value TurboFold(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs Alterna Matthews Correlation Coefficient TurboFold(20): N/A Alterna: N/A Sensitivity TurboFold(20): N/A Alterna: N/A Positive Predictive Value TurboFold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs TurboFold(20) Matthews Correlation Coefficient PPfold(20): N/A TurboFold(20): N/A Sensitivity PPfold(20): N/A TurboFold(20): N/A Positive Predictive Value PPfold(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(20) vs RNAwolf Matthews Correlation Coefficient TurboFold(20): N/A RNAwolf: N/A Sensitivity TurboFold(20): N/A RNAwolf: N/A Positive Predictive Value TurboFold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs TurboFold(20) Matthews Correlation Coefficient Mastr(20): N/A TurboFold(20): N/A Sensitivity Mastr(20): N/A TurboFold(20): N/A Positive Predictive Value Mastr(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Mastr(seed)	3 PETfold_pre2.0(seed) vs Mastr(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.623 Mastr(seed): 0.000 Sensitivity PETfold_pre2.0(seed): 0.574 Mastr(seed): 0.000 Positive Predictive Value PETfold_pre2.0(seed): 0.677 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 ContextFold vs Mastr(seed) Matthews Correlation Coefficient ContextFold: 0.602 Mastr(seed): 0.000 Sensitivity ContextFold: 0.575 Mastr(seed): 0.000 Positive Predictive Value ContextFold: 0.630 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 CentroidAlifold(seed) vs Mastr(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.476 Mastr(seed): 0.000 Sensitivity CentroidAlifold(seed): 0.320 Mastr(seed): 0.000 Positive Predictive Value CentroidAlifold(seed): 0.710 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	2 PETfold_pre2.0(20) vs Mastr(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.588 Mastr(seed): 0.000 Sensitivity PETfold_pre2.0(20): 0.542 Mastr(seed): 0.000 Positive Predictive Value PETfold_pre2.0(20): 0.638 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	2 CentroidAlifold(20) vs Mastr(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.503 Mastr(seed): 0.000 Sensitivity CentroidAlifold(20): 0.348 Mastr(seed): 0.000 Positive Predictive Value CentroidAlifold(20): 0.727 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 RNAalifold(seed) vs Mastr(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.420 Mastr(seed): 0.000 Sensitivity RNAalifold(seed): 0.343 Mastr(seed): 0.000 Positive Predictive Value RNAalifold(seed): 0.514 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	2 RNAalifold(20) vs Mastr(seed) Matthews Correlation Coefficient RNAalifold(20): 0.407 Mastr(seed): 0.000 Sensitivity RNAalifold(20): 0.356 Mastr(seed): 0.000 Positive Predictive Value RNAalifold(20): 0.466 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 MXScarna(seed) vs Mastr(seed) Matthews Correlation Coefficient MXScarna(seed): 0.375 Mastr(seed): 0.000 Sensitivity MXScarna(seed): 0.333 Mastr(seed): 0.000 Positive Predictive Value MXScarna(seed): 0.423 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	2 MXScarna(20) vs Mastr(seed) Matthews Correlation Coefficient MXScarna(20): 0.396 Mastr(seed): 0.000 Sensitivity MXScarna(20): 0.359 Mastr(seed): 0.000 Positive Predictive Value MXScarna(20): 0.438 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	2 Carnac(20) vs Mastr(seed) Matthews Correlation Coefficient Carnac(20): 0.520 Mastr(seed): 0.000 Sensitivity Carnac(20): 0.287 Mastr(seed): 0.000 Positive Predictive Value Carnac(20): 0.941 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 IPknot vs Mastr(seed) Matthews Correlation Coefficient IPknot: 0.465 Mastr(seed): 0.000 Sensitivity IPknot: 0.384 Mastr(seed): 0.000 Positive Predictive Value IPknot: 0.563 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	2 CentroidFold vs Mastr(seed) Matthews Correlation Coefficient CentroidFold: 0.432 Mastr(seed): 0.000 Sensitivity CentroidFold: 0.376 Mastr(seed): 0.000 Positive Predictive Value CentroidFold: 0.497 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 Contrafold vs Mastr(seed) Matthews Correlation Coefficient Contrafold: 0.425 Mastr(seed): 0.000 Sensitivity Contrafold: 0.413 Mastr(seed): 0.000 Positive Predictive Value Contrafold: 0.437 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	2 Mastr(seed) vs RSpredict(seed) Matthews Correlation Coefficient Mastr(seed): 0.000 RSpredict(seed): 0.000 Sensitivity Mastr(seed): 0.000 RSpredict(seed): 0.000 Positive Predictive Value Mastr(seed): 0.000 RSpredict(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	2 RSpredict(20) vs Mastr(seed) Matthews Correlation Coefficient RSpredict(20): 0.175 Mastr(seed): 0.000 Sensitivity RSpredict(20): 0.159 Mastr(seed): 0.000 Positive Predictive Value RSpredict(20): 0.194 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 Sfold vs Mastr(seed) Matthews Correlation Coefficient Sfold: 0.391 Mastr(seed): 0.000 Sensitivity Sfold: 0.332 Mastr(seed): 0.000 Positive Predictive Value Sfold: 0.462 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 MaxExpect vs Mastr(seed) Matthews Correlation Coefficient MaxExpect: 0.387 Mastr(seed): 0.000 Sensitivity MaxExpect: 0.381 Mastr(seed): 0.000 Positive Predictive Value MaxExpect: 0.393 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 ProbKnot vs Mastr(seed) Matthews Correlation Coefficient ProbKnot: 0.371 Mastr(seed): 0.000 Sensitivity ProbKnot: 0.372 Mastr(seed): 0.000 Positive Predictive Value ProbKnot: 0.371 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 UNAFold vs Mastr(seed) Matthews Correlation Coefficient UNAFold: 0.358 Mastr(seed): 0.000 Sensitivity UNAFold: 0.361 Mastr(seed): 0.000 Positive Predictive Value UNAFold: 0.356 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	0 Mastr(seed) vs CRWrnafold Matthews Correlation Coefficient Mastr(seed): N/A CRWrnafold: N/A Sensitivity Mastr(seed): N/A CRWrnafold: N/A Positive Predictive Value Mastr(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	2 Afold vs Mastr(seed) Matthews Correlation Coefficient Afold: 0.478 Mastr(seed): 0.000 Sensitivity Afold: 0.476 Mastr(seed): 0.000 Positive Predictive Value Afold: 0.480 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	3 Fold vs Mastr(seed) Matthews Correlation Coefficient Fold: 0.351 Mastr(seed): 0.000 Sensitivity Fold: 0.359 Mastr(seed): 0.000 Positive Predictive Value Fold: 0.344 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	3 RNAfold vs Mastr(seed) Matthews Correlation Coefficient RNAfold: 0.385 Mastr(seed): 0.000 Sensitivity RNAfold: 0.389 Mastr(seed): 0.000 Positive Predictive Value RNAfold: 0.381 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	1 PknotsRG vs Mastr(seed) Matthews Correlation Coefficient PknotsRG: 0.517 Mastr(seed): 0.000 Sensitivity PknotsRG: 0.517 Mastr(seed): 0.000 Positive Predictive Value PknotsRG: 0.518 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Mastr(seed) vs Murlet(seed) Matthews Correlation Coefficient Mastr(seed): N/A Murlet(seed): N/A Sensitivity Mastr(seed): N/A Murlet(seed): N/A Positive Predictive Value Mastr(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs McQFold Matthews Correlation Coefficient Mastr(seed): N/A McQFold: N/A Sensitivity Mastr(seed): N/A McQFold: N/A Positive Predictive Value Mastr(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Mastr(seed) Matthews Correlation Coefficient NanoFolder: N/A Mastr(seed): N/A Sensitivity NanoFolder: N/A Mastr(seed): N/A Positive Predictive Value NanoFolder: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Mastr(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity Mastr(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Mastr(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs CMfinder(seed) Matthews Correlation Coefficient Mastr(seed): N/A CMfinder(seed): N/A Sensitivity Mastr(seed): N/A CMfinder(seed): N/A Positive Predictive Value Mastr(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs RNAshapes Matthews Correlation Coefficient Mastr(seed): N/A RNAshapes: N/A Sensitivity Mastr(seed): N/A RNAshapes: N/A Positive Predictive Value Mastr(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Multilign(seed) Matthews Correlation Coefficient Mastr(seed): N/A Multilign(seed): N/A Sensitivity Mastr(seed): N/A Multilign(seed): N/A Positive Predictive Value Mastr(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Multilign(20) Matthews Correlation Coefficient Mastr(seed): N/A Multilign(20): N/A Sensitivity Mastr(seed): N/A Multilign(20): N/A Positive Predictive Value Mastr(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs TurboFold(20) Matthews Correlation Coefficient Mastr(seed): N/A TurboFold(20): N/A Sensitivity Mastr(seed): N/A TurboFold(20): N/A Positive Predictive Value Mastr(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Mastr(seed) vs RNAsubopt Matthews Correlation Coefficient Mastr(seed): N/A RNAsubopt: N/A Sensitivity Mastr(seed): N/A RNAsubopt: N/A Positive Predictive Value Mastr(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Mastr(seed) Matthews Correlation Coefficient HotKnots: N/A Mastr(seed): N/A Sensitivity HotKnots: N/A Mastr(seed): N/A Positive Predictive Value HotKnots: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Pknots Matthews Correlation Coefficient Mastr(seed): N/A Pknots: N/A Sensitivity Mastr(seed): N/A Pknots: N/A Positive Predictive Value Mastr(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Mastr(seed) Matthews Correlation Coefficient Cylofold: N/A Mastr(seed): N/A Sensitivity Cylofold: N/A Mastr(seed): N/A Positive Predictive Value Cylofold: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs MCFold Matthews Correlation Coefficient Mastr(seed): N/A MCFold: N/A Sensitivity Mastr(seed): N/A MCFold: N/A Positive Predictive Value Mastr(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Vsfold5 Matthews Correlation Coefficient Mastr(seed): N/A Vsfold5: N/A Sensitivity Mastr(seed): N/A Vsfold5: N/A Positive Predictive Value Mastr(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Vsfold4 Matthews Correlation Coefficient Mastr(seed): N/A Vsfold4: N/A Sensitivity Mastr(seed): N/A Vsfold4: N/A Positive Predictive Value Mastr(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Carnac(seed) Matthews Correlation Coefficient Mastr(seed): N/A Carnac(seed): N/A Sensitivity Mastr(seed): N/A Carnac(seed): N/A Positive Predictive Value Mastr(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Mastr(seed) Matthews Correlation Coefficient RNASampler(20): N/A Mastr(seed): N/A Sensitivity RNASampler(20): N/A Mastr(seed): N/A Positive Predictive Value RNASampler(20): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs CMfinder(20) Matthews Correlation Coefficient Mastr(seed): N/A CMfinder(20): N/A Sensitivity Mastr(seed): N/A CMfinder(20): N/A Positive Predictive Value Mastr(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs PPfold(seed) Matthews Correlation Coefficient Mastr(seed): N/A PPfold(seed): N/A Sensitivity Mastr(seed): N/A PPfold(seed): N/A Positive Predictive Value Mastr(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs RDfolder Matthews Correlation Coefficient Mastr(seed): N/A RDfolder: N/A Sensitivity Mastr(seed): N/A RDfolder: N/A Positive Predictive Value Mastr(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Mastr(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Mastr(seed): N/A Sensitivity TurboFold(seed): N/A Mastr(seed): N/A Positive Predictive Value TurboFold(seed): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Mastr(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Mastr(seed): N/A Sensitivity RNASampler(seed): N/A Mastr(seed): N/A Positive Predictive Value RNASampler(seed): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs RNASLOpt Matthews Correlation Coefficient Mastr(seed): N/A RNASLOpt: N/A Sensitivity Mastr(seed): N/A RNASLOpt: N/A Positive Predictive Value Mastr(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Murlet(20) Matthews Correlation Coefficient Mastr(seed): N/A Murlet(20): N/A Sensitivity Mastr(seed): N/A Murlet(20): N/A Positive Predictive Value Mastr(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs Alterna Matthews Correlation Coefficient Mastr(seed): N/A Alterna: N/A Sensitivity Mastr(seed): N/A Alterna: N/A Positive Predictive Value Mastr(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs PPfold(20) Matthews Correlation Coefficient Mastr(seed): N/A PPfold(20): N/A Sensitivity Mastr(seed): N/A PPfold(20): N/A Positive Predictive Value Mastr(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(seed) vs RNAwolf Matthews Correlation Coefficient Mastr(seed): N/A RNAwolf: N/A Sensitivity Mastr(seed): N/A RNAwolf: N/A Positive Predictive Value Mastr(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Mastr(seed) Matthews Correlation Coefficient Mastr(20): 0.000 Mastr(seed): 0.000 Sensitivity Mastr(20): 0.000 Mastr(seed): 0.000 Positive Predictive Value Mastr(20): 0.000 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0
RNAsubopt	0 PETfold_pre2.0(seed) vs RNAsubopt Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAsubopt: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAsubopt: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs RNAsubopt Matthews Correlation Coefficient ContextFold: N/A RNAsubopt: N/A Sensitivity ContextFold: N/A RNAsubopt: N/A Positive Predictive Value ContextFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs RNAsubopt Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAsubopt: N/A Sensitivity CentroidAlifold(seed): N/A RNAsubopt: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs RNAsubopt Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAsubopt: N/A Sensitivity PETfold_pre2.0(20): N/A RNAsubopt: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs RNAsubopt Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAsubopt: N/A Sensitivity CentroidAlifold(20): N/A RNAsubopt: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs RNAsubopt Matthews Correlation Coefficient RNAalifold(seed): N/A RNAsubopt: N/A Sensitivity RNAalifold(seed): N/A RNAsubopt: N/A Positive Predictive Value RNAalifold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs RNAsubopt Matthews Correlation Coefficient RNAalifold(20): N/A RNAsubopt: N/A Sensitivity RNAalifold(20): N/A RNAsubopt: N/A Positive Predictive Value RNAalifold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs MXScarna(seed) Matthews Correlation Coefficient RNAsubopt: N/A MXScarna(seed): N/A Sensitivity RNAsubopt: N/A MXScarna(seed): N/A Positive Predictive Value RNAsubopt: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs MXScarna(20) Matthews Correlation Coefficient RNAsubopt: N/A MXScarna(20): N/A Sensitivity RNAsubopt: N/A MXScarna(20): N/A Positive Predictive Value RNAsubopt: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs RNAsubopt Matthews Correlation Coefficient Carnac(20): N/A RNAsubopt: N/A Sensitivity Carnac(20): N/A RNAsubopt: N/A Positive Predictive Value Carnac(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs IPknot Matthews Correlation Coefficient RNAsubopt: N/A IPknot: N/A Sensitivity RNAsubopt: N/A IPknot: N/A Positive Predictive Value RNAsubopt: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs RNAsubopt Matthews Correlation Coefficient CentroidFold: N/A RNAsubopt: N/A Sensitivity CentroidFold: N/A RNAsubopt: N/A Positive Predictive Value CentroidFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs RNAsubopt Matthews Correlation Coefficient Contrafold: N/A RNAsubopt: N/A Sensitivity Contrafold: N/A RNAsubopt: N/A Positive Predictive Value Contrafold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs RNAsubopt Matthews Correlation Coefficient RSpredict(seed): N/A RNAsubopt: N/A Sensitivity RSpredict(seed): N/A RNAsubopt: N/A Positive Predictive Value RSpredict(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RNAsubopt Matthews Correlation Coefficient RSpredict(20): N/A RNAsubopt: N/A Sensitivity RSpredict(20): N/A RNAsubopt: N/A Positive Predictive Value RSpredict(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs Sfold Matthews Correlation Coefficient RNAsubopt: N/A Sfold: N/A Sensitivity RNAsubopt: N/A Sfold: N/A Positive Predictive Value RNAsubopt: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs RNAsubopt Matthews Correlation Coefficient MaxExpect: N/A RNAsubopt: N/A Sensitivity MaxExpect: N/A RNAsubopt: N/A Positive Predictive Value MaxExpect: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs RNAsubopt Matthews Correlation Coefficient ProbKnot: N/A RNAsubopt: N/A Sensitivity ProbKnot: N/A RNAsubopt: N/A Positive Predictive Value ProbKnot: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs RNAsubopt Matthews Correlation Coefficient UNAFold: N/A RNAsubopt: N/A Sensitivity UNAFold: N/A RNAsubopt: N/A Positive Predictive Value UNAFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs CRWrnafold Matthews Correlation Coefficient RNAsubopt: N/A CRWrnafold: N/A Sensitivity RNAsubopt: N/A CRWrnafold: N/A Positive Predictive Value RNAsubopt: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs RNAsubopt Matthews Correlation Coefficient Afold: N/A RNAsubopt: N/A Sensitivity Afold: N/A RNAsubopt: N/A Positive Predictive Value Afold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs RNAsubopt Matthews Correlation Coefficient Fold: N/A RNAsubopt: N/A Sensitivity Fold: N/A RNAsubopt: N/A Positive Predictive Value Fold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs RNAfold Matthews Correlation Coefficient RNAsubopt: N/A RNAfold: N/A Sensitivity RNAsubopt: N/A RNAfold: N/A Positive Predictive Value RNAsubopt: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs RNAsubopt Matthews Correlation Coefficient PknotsRG: N/A RNAsubopt: N/A Sensitivity PknotsRG: N/A RNAsubopt: N/A Positive Predictive Value PknotsRG: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs RNAsubopt Matthews Correlation Coefficient Murlet(seed): N/A RNAsubopt: N/A Sensitivity Murlet(seed): N/A RNAsubopt: N/A Positive Predictive Value Murlet(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs RNAsubopt Matthews Correlation Coefficient McQFold: N/A RNAsubopt: N/A Sensitivity McQFold: N/A RNAsubopt: N/A Positive Predictive Value McQFold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNAsubopt Matthews Correlation Coefficient NanoFolder: N/A RNAsubopt: N/A Sensitivity NanoFolder: N/A RNAsubopt: N/A Positive Predictive Value NanoFolder: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAsubopt: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAsubopt: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAsubopt: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs RNAsubopt Matthews Correlation Coefficient CMfinder(seed): N/A RNAsubopt: N/A Sensitivity CMfinder(seed): N/A RNAsubopt: N/A Positive Predictive Value CMfinder(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs RNAshapes Matthews Correlation Coefficient RNAsubopt: N/A RNAshapes: N/A Sensitivity RNAsubopt: N/A RNAshapes: N/A Positive Predictive Value RNAsubopt: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs RNAsubopt Matthews Correlation Coefficient Multilign(seed): N/A RNAsubopt: N/A Sensitivity Multilign(seed): N/A RNAsubopt: N/A Positive Predictive Value Multilign(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs Multilign(20) Matthews Correlation Coefficient RNAsubopt: N/A Multilign(20): N/A Sensitivity RNAsubopt: N/A Multilign(20): N/A Positive Predictive Value RNAsubopt: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAsubopt Matthews Correlation Coefficient TurboFold(20): N/A RNAsubopt: N/A Sensitivity TurboFold(20): N/A RNAsubopt: N/A Positive Predictive Value TurboFold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs RNAsubopt Matthews Correlation Coefficient Mastr(seed): N/A RNAsubopt: N/A Sensitivity Mastr(seed): N/A RNAsubopt: N/A Positive Predictive Value Mastr(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? HotKnots vs RNAsubopt Matthews Correlation Coefficient HotKnots: N/A RNAsubopt: N/A Sensitivity HotKnots: N/A RNAsubopt: N/A Positive Predictive Value HotKnots: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNAsubopt Matthews Correlation Coefficient Pknots: N/A RNAsubopt: N/A Sensitivity Pknots: N/A RNAsubopt: N/A Positive Predictive Value Pknots: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAsubopt Matthews Correlation Coefficient Cylofold: N/A RNAsubopt: N/A Sensitivity Cylofold: N/A RNAsubopt: N/A Positive Predictive Value Cylofold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs MCFold Matthews Correlation Coefficient RNAsubopt: N/A MCFold: N/A Sensitivity RNAsubopt: N/A MCFold: N/A Positive Predictive Value RNAsubopt: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAsubopt Matthews Correlation Coefficient Vsfold5: N/A RNAsubopt: N/A Sensitivity Vsfold5: N/A RNAsubopt: N/A Positive Predictive Value Vsfold5: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNAsubopt Matthews Correlation Coefficient Vsfold4: N/A RNAsubopt: N/A Sensitivity Vsfold4: N/A RNAsubopt: N/A Positive Predictive Value Vsfold4: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs Carnac(seed) Matthews Correlation Coefficient RNAsubopt: N/A Carnac(seed): N/A Sensitivity RNAsubopt: N/A Carnac(seed): N/A Positive Predictive Value RNAsubopt: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RNAsubopt Matthews Correlation Coefficient RNASampler(20): N/A RNAsubopt: N/A Sensitivity RNASampler(20): N/A RNAsubopt: N/A Positive Predictive Value RNASampler(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs CMfinder(20) Matthews Correlation Coefficient RNAsubopt: N/A CMfinder(20): N/A Sensitivity RNAsubopt: N/A CMfinder(20): N/A Positive Predictive Value RNAsubopt: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNAsubopt Matthews Correlation Coefficient PPfold(seed): N/A RNAsubopt: N/A Sensitivity PPfold(seed): N/A RNAsubopt: N/A Positive Predictive Value PPfold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAsubopt Matthews Correlation Coefficient RDfolder: N/A RNAsubopt: N/A Sensitivity RDfolder: N/A RNAsubopt: N/A Positive Predictive Value RDfolder: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAsubopt Matthews Correlation Coefficient TurboFold(seed): N/A RNAsubopt: N/A Sensitivity TurboFold(seed): N/A RNAsubopt: N/A Positive Predictive Value TurboFold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAsubopt Matthews Correlation Coefficient RNASampler(seed): N/A RNAsubopt: N/A Sensitivity RNASampler(seed): N/A RNAsubopt: N/A Positive Predictive Value RNASampler(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs RNASLOpt Matthews Correlation Coefficient RNAsubopt: N/A RNASLOpt: N/A Sensitivity RNAsubopt: N/A RNASLOpt: N/A Positive Predictive Value RNAsubopt: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs RNAsubopt Matthews Correlation Coefficient Murlet(20): N/A RNAsubopt: N/A Sensitivity Murlet(20): N/A RNAsubopt: N/A Positive Predictive Value Murlet(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs RNAsubopt Matthews Correlation Coefficient Alterna: N/A RNAsubopt: N/A Sensitivity Alterna: N/A RNAsubopt: N/A Positive Predictive Value Alterna: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNAsubopt Matthews Correlation Coefficient PPfold(20): N/A RNAsubopt: N/A Sensitivity PPfold(20): N/A RNAsubopt: N/A Positive Predictive Value PPfold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAsubopt vs RNAwolf Matthews Correlation Coefficient RNAsubopt: N/A RNAwolf: N/A Sensitivity RNAsubopt: N/A RNAwolf: N/A Positive Predictive Value RNAsubopt: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs RNAsubopt Matthews Correlation Coefficient Mastr(20): N/A RNAsubopt: N/A Sensitivity Mastr(20): N/A RNAsubopt: N/A Positive Predictive Value Mastr(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
HotKnots	0 HotKnots vs PETfold_pre2.0(seed) Matthews Correlation Coefficient HotKnots: N/A PETfold_pre2.0(seed): N/A Sensitivity HotKnots: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value HotKnots: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs ContextFold Matthews Correlation Coefficient HotKnots: N/A ContextFold: N/A Sensitivity HotKnots: N/A ContextFold: N/A Positive Predictive Value HotKnots: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs HotKnots Matthews Correlation Coefficient CentroidAlifold(seed): N/A HotKnots: N/A Sensitivity CentroidAlifold(seed): N/A HotKnots: N/A Positive Predictive Value CentroidAlifold(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs PETfold_pre2.0(20) Matthews Correlation Coefficient HotKnots: N/A PETfold_pre2.0(20): N/A Sensitivity HotKnots: N/A PETfold_pre2.0(20): N/A Positive Predictive Value HotKnots: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CentroidAlifold(20) Matthews Correlation Coefficient HotKnots: N/A CentroidAlifold(20): N/A Sensitivity HotKnots: N/A CentroidAlifold(20): N/A Positive Predictive Value HotKnots: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAalifold(seed) Matthews Correlation Coefficient HotKnots: N/A RNAalifold(seed): N/A Sensitivity HotKnots: N/A RNAalifold(seed): N/A Positive Predictive Value HotKnots: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAalifold(20) Matthews Correlation Coefficient HotKnots: N/A RNAalifold(20): N/A Sensitivity HotKnots: N/A RNAalifold(20): N/A Positive Predictive Value HotKnots: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs MXScarna(seed) Matthews Correlation Coefficient HotKnots: N/A MXScarna(seed): N/A Sensitivity HotKnots: N/A MXScarna(seed): N/A Positive Predictive Value HotKnots: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs MXScarna(20) Matthews Correlation Coefficient HotKnots: N/A MXScarna(20): N/A Sensitivity HotKnots: N/A MXScarna(20): N/A Positive Predictive Value HotKnots: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Carnac(20) Matthews Correlation Coefficient HotKnots: N/A Carnac(20): N/A Sensitivity HotKnots: N/A Carnac(20): N/A Positive Predictive Value HotKnots: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs IPknot Matthews Correlation Coefficient HotKnots: N/A IPknot: N/A Sensitivity HotKnots: N/A IPknot: N/A Positive Predictive Value HotKnots: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CentroidFold Matthews Correlation Coefficient HotKnots: N/A CentroidFold: N/A Sensitivity HotKnots: N/A CentroidFold: N/A Positive Predictive Value HotKnots: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Contrafold Matthews Correlation Coefficient HotKnots: N/A Contrafold: N/A Sensitivity HotKnots: N/A Contrafold: N/A Positive Predictive Value HotKnots: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs HotKnots Matthews Correlation Coefficient RSpredict(seed): N/A HotKnots: N/A Sensitivity RSpredict(seed): N/A HotKnots: N/A Positive Predictive Value RSpredict(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs HotKnots Matthews Correlation Coefficient RSpredict(20): N/A HotKnots: N/A Sensitivity RSpredict(20): N/A HotKnots: N/A Positive Predictive Value RSpredict(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Sfold Matthews Correlation Coefficient HotKnots: N/A Sfold: N/A Sensitivity HotKnots: N/A Sfold: N/A Positive Predictive Value HotKnots: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs HotKnots Matthews Correlation Coefficient MaxExpect: N/A HotKnots: N/A Sensitivity MaxExpect: N/A HotKnots: N/A Positive Predictive Value MaxExpect: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs ProbKnot Matthews Correlation Coefficient HotKnots: N/A ProbKnot: N/A Sensitivity HotKnots: N/A ProbKnot: N/A Positive Predictive Value HotKnots: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs HotKnots Matthews Correlation Coefficient UNAFold: N/A HotKnots: N/A Sensitivity UNAFold: N/A HotKnots: N/A Positive Predictive Value UNAFold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CRWrnafold Matthews Correlation Coefficient HotKnots: N/A CRWrnafold: N/A Sensitivity HotKnots: N/A CRWrnafold: N/A Positive Predictive Value HotKnots: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Afold Matthews Correlation Coefficient HotKnots: N/A Afold: N/A Sensitivity HotKnots: N/A Afold: N/A Positive Predictive Value HotKnots: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs HotKnots Matthews Correlation Coefficient Fold: N/A HotKnots: N/A Sensitivity Fold: N/A HotKnots: N/A Positive Predictive Value Fold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAfold Matthews Correlation Coefficient HotKnots: N/A RNAfold: N/A Sensitivity HotKnots: N/A RNAfold: N/A Positive Predictive Value HotKnots: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs HotKnots Matthews Correlation Coefficient PknotsRG: N/A HotKnots: N/A Sensitivity PknotsRG: N/A HotKnots: N/A Positive Predictive Value PknotsRG: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Murlet(seed) Matthews Correlation Coefficient HotKnots: N/A Murlet(seed): N/A Sensitivity HotKnots: N/A Murlet(seed): N/A Positive Predictive Value HotKnots: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs McQFold Matthews Correlation Coefficient HotKnots: N/A McQFold: N/A Sensitivity HotKnots: N/A McQFold: N/A Positive Predictive Value HotKnots: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs HotKnots Matthews Correlation Coefficient NanoFolder: N/A HotKnots: N/A Sensitivity NanoFolder: N/A HotKnots: N/A Positive Predictive Value NanoFolder: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CentroidHomfold‑LAST Matthews Correlation Coefficient HotKnots: N/A CentroidHomfold‑LAST: N/A Sensitivity HotKnots: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value HotKnots: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CMfinder(seed) Matthews Correlation Coefficient HotKnots: N/A CMfinder(seed): N/A Sensitivity HotKnots: N/A CMfinder(seed): N/A Positive Predictive Value HotKnots: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAshapes Matthews Correlation Coefficient HotKnots: N/A RNAshapes: N/A Sensitivity HotKnots: N/A RNAshapes: N/A Positive Predictive Value HotKnots: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Multilign(seed) Matthews Correlation Coefficient HotKnots: N/A Multilign(seed): N/A Sensitivity HotKnots: N/A Multilign(seed): N/A Positive Predictive Value HotKnots: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Multilign(20) Matthews Correlation Coefficient HotKnots: N/A Multilign(20): N/A Sensitivity HotKnots: N/A Multilign(20): N/A Positive Predictive Value HotKnots: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs TurboFold(20) Matthews Correlation Coefficient HotKnots: N/A TurboFold(20): N/A Sensitivity HotKnots: N/A TurboFold(20): N/A Positive Predictive Value HotKnots: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Mastr(seed) Matthews Correlation Coefficient HotKnots: N/A Mastr(seed): N/A Sensitivity HotKnots: N/A Mastr(seed): N/A Positive Predictive Value HotKnots: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAsubopt Matthews Correlation Coefficient HotKnots: N/A RNAsubopt: N/A Sensitivity HotKnots: N/A RNAsubopt: N/A Positive Predictive Value HotKnots: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? HotKnots vs Pknots Matthews Correlation Coefficient HotKnots: N/A Pknots: N/A Sensitivity HotKnots: N/A Pknots: N/A Positive Predictive Value HotKnots: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs HotKnots Matthews Correlation Coefficient Cylofold: N/A HotKnots: N/A Sensitivity Cylofold: N/A HotKnots: N/A Positive Predictive Value Cylofold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs MCFold Matthews Correlation Coefficient HotKnots: N/A MCFold: N/A Sensitivity HotKnots: N/A MCFold: N/A Positive Predictive Value HotKnots: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Vsfold5 Matthews Correlation Coefficient HotKnots: N/A Vsfold5: N/A Sensitivity HotKnots: N/A Vsfold5: N/A Positive Predictive Value HotKnots: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Vsfold4 Matthews Correlation Coefficient HotKnots: N/A Vsfold4: N/A Sensitivity HotKnots: N/A Vsfold4: N/A Positive Predictive Value HotKnots: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Carnac(seed) Matthews Correlation Coefficient HotKnots: N/A Carnac(seed): N/A Sensitivity HotKnots: N/A Carnac(seed): N/A Positive Predictive Value HotKnots: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs HotKnots Matthews Correlation Coefficient RNASampler(20): N/A HotKnots: N/A Sensitivity RNASampler(20): N/A HotKnots: N/A Positive Predictive Value RNASampler(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs CMfinder(20) Matthews Correlation Coefficient HotKnots: N/A CMfinder(20): N/A Sensitivity HotKnots: N/A CMfinder(20): N/A Positive Predictive Value HotKnots: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs PPfold(seed) Matthews Correlation Coefficient HotKnots: N/A PPfold(seed): N/A Sensitivity HotKnots: N/A PPfold(seed): N/A Positive Predictive Value HotKnots: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RDfolder Matthews Correlation Coefficient HotKnots: N/A RDfolder: N/A Sensitivity HotKnots: N/A RDfolder: N/A Positive Predictive Value HotKnots: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs HotKnots Matthews Correlation Coefficient TurboFold(seed): N/A HotKnots: N/A Sensitivity TurboFold(seed): N/A HotKnots: N/A Positive Predictive Value TurboFold(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs HotKnots Matthews Correlation Coefficient RNASampler(seed): N/A HotKnots: N/A Sensitivity RNASampler(seed): N/A HotKnots: N/A Positive Predictive Value RNASampler(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNASLOpt Matthews Correlation Coefficient HotKnots: N/A RNASLOpt: N/A Sensitivity HotKnots: N/A RNASLOpt: N/A Positive Predictive Value HotKnots: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Murlet(20) Matthews Correlation Coefficient HotKnots: N/A Murlet(20): N/A Sensitivity HotKnots: N/A Murlet(20): N/A Positive Predictive Value HotKnots: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs Alterna Matthews Correlation Coefficient HotKnots: N/A Alterna: N/A Sensitivity HotKnots: N/A Alterna: N/A Positive Predictive Value HotKnots: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs PPfold(20) Matthews Correlation Coefficient HotKnots: N/A PPfold(20): N/A Sensitivity HotKnots: N/A PPfold(20): N/A Positive Predictive Value HotKnots: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? HotKnots vs RNAwolf Matthews Correlation Coefficient HotKnots: N/A RNAwolf: N/A Sensitivity HotKnots: N/A RNAwolf: N/A Positive Predictive Value HotKnots: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs HotKnots Matthews Correlation Coefficient Mastr(20): N/A HotKnots: N/A Sensitivity Mastr(20): N/A HotKnots: N/A Positive Predictive Value Mastr(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Pknots	0 Pknots vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Pknots: N/A PETfold_pre2.0(seed): N/A Sensitivity Pknots: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Pknots: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs Pknots Matthews Correlation Coefficient ContextFold: N/A Pknots: N/A Sensitivity ContextFold: N/A Pknots: N/A Positive Predictive Value ContextFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Pknots Matthews Correlation Coefficient CentroidAlifold(seed): N/A Pknots: N/A Sensitivity CentroidAlifold(seed): N/A Pknots: N/A Positive Predictive Value CentroidAlifold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs PETfold_pre2.0(20) Matthews Correlation Coefficient Pknots: N/A PETfold_pre2.0(20): N/A Sensitivity Pknots: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Pknots: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CentroidAlifold(20) Matthews Correlation Coefficient Pknots: N/A CentroidAlifold(20): N/A Sensitivity Pknots: N/A CentroidAlifold(20): N/A Positive Predictive Value Pknots: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNAalifold(seed) Matthews Correlation Coefficient Pknots: N/A RNAalifold(seed): N/A Sensitivity Pknots: N/A RNAalifold(seed): N/A Positive Predictive Value Pknots: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs Pknots Matthews Correlation Coefficient RNAalifold(20): N/A Pknots: N/A Sensitivity RNAalifold(20): N/A Pknots: N/A Positive Predictive Value RNAalifold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs MXScarna(seed) Matthews Correlation Coefficient Pknots: N/A MXScarna(seed): N/A Sensitivity Pknots: N/A MXScarna(seed): N/A Positive Predictive Value Pknots: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs MXScarna(20) Matthews Correlation Coefficient Pknots: N/A MXScarna(20): N/A Sensitivity Pknots: N/A MXScarna(20): N/A Positive Predictive Value Pknots: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Carnac(20) Matthews Correlation Coefficient Pknots: N/A Carnac(20): N/A Sensitivity Pknots: N/A Carnac(20): N/A Positive Predictive Value Pknots: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs IPknot Matthews Correlation Coefficient Pknots: N/A IPknot: N/A Sensitivity Pknots: N/A IPknot: N/A Positive Predictive Value Pknots: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CentroidFold Matthews Correlation Coefficient Pknots: N/A CentroidFold: N/A Sensitivity Pknots: N/A CentroidFold: N/A Positive Predictive Value Pknots: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Contrafold Matthews Correlation Coefficient Pknots: N/A Contrafold: N/A Sensitivity Pknots: N/A Contrafold: N/A Positive Predictive Value Pknots: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Pknots Matthews Correlation Coefficient RSpredict(seed): N/A Pknots: N/A Sensitivity RSpredict(seed): N/A Pknots: N/A Positive Predictive Value RSpredict(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Pknots Matthews Correlation Coefficient RSpredict(20): N/A Pknots: N/A Sensitivity RSpredict(20): N/A Pknots: N/A Positive Predictive Value RSpredict(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Sfold Matthews Correlation Coefficient Pknots: N/A Sfold: N/A Sensitivity Pknots: N/A Sfold: N/A Positive Predictive Value Pknots: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Pknots Matthews Correlation Coefficient MaxExpect: N/A Pknots: N/A Sensitivity MaxExpect: N/A Pknots: N/A Positive Predictive Value MaxExpect: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs Pknots Matthews Correlation Coefficient ProbKnot: N/A Pknots: N/A Sensitivity ProbKnot: N/A Pknots: N/A Positive Predictive Value ProbKnot: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Pknots Matthews Correlation Coefficient UNAFold: N/A Pknots: N/A Sensitivity UNAFold: N/A Pknots: N/A Positive Predictive Value UNAFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CRWrnafold Matthews Correlation Coefficient Pknots: N/A CRWrnafold: N/A Sensitivity Pknots: N/A CRWrnafold: N/A Positive Predictive Value Pknots: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Afold Matthews Correlation Coefficient Pknots: N/A Afold: N/A Sensitivity Pknots: N/A Afold: N/A Positive Predictive Value Pknots: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Pknots Matthews Correlation Coefficient Fold: N/A Pknots: N/A Sensitivity Fold: N/A Pknots: N/A Positive Predictive Value Fold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNAfold Matthews Correlation Coefficient Pknots: N/A RNAfold: N/A Sensitivity Pknots: N/A RNAfold: N/A Positive Predictive Value Pknots: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Pknots Matthews Correlation Coefficient PknotsRG: N/A Pknots: N/A Sensitivity PknotsRG: N/A Pknots: N/A Positive Predictive Value PknotsRG: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Murlet(seed) Matthews Correlation Coefficient Pknots: N/A Murlet(seed): N/A Sensitivity Pknots: N/A Murlet(seed): N/A Positive Predictive Value Pknots: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Pknots Matthews Correlation Coefficient McQFold: N/A Pknots: N/A Sensitivity McQFold: N/A Pknots: N/A Positive Predictive Value McQFold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Pknots Matthews Correlation Coefficient NanoFolder: N/A Pknots: N/A Sensitivity NanoFolder: N/A Pknots: N/A Positive Predictive Value NanoFolder: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CentroidHomfold‑LAST Matthews Correlation Coefficient Pknots: N/A CentroidHomfold‑LAST: N/A Sensitivity Pknots: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Pknots: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CMfinder(seed) Matthews Correlation Coefficient Pknots: N/A CMfinder(seed): N/A Sensitivity Pknots: N/A CMfinder(seed): N/A Positive Predictive Value Pknots: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNAshapes Matthews Correlation Coefficient Pknots: N/A RNAshapes: N/A Sensitivity Pknots: N/A RNAshapes: N/A Positive Predictive Value Pknots: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Multilign(seed) Matthews Correlation Coefficient Pknots: N/A Multilign(seed): N/A Sensitivity Pknots: N/A Multilign(seed): N/A Positive Predictive Value Pknots: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Multilign(20) Matthews Correlation Coefficient Pknots: N/A Multilign(20): N/A Sensitivity Pknots: N/A Multilign(20): N/A Positive Predictive Value Pknots: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Pknots Matthews Correlation Coefficient TurboFold(20): N/A Pknots: N/A Sensitivity TurboFold(20): N/A Pknots: N/A Positive Predictive Value TurboFold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Pknots Matthews Correlation Coefficient Mastr(seed): N/A Pknots: N/A Sensitivity Mastr(seed): N/A Pknots: N/A Positive Predictive Value Mastr(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNAsubopt Matthews Correlation Coefficient Pknots: N/A RNAsubopt: N/A Sensitivity Pknots: N/A RNAsubopt: N/A Positive Predictive Value Pknots: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Pknots Matthews Correlation Coefficient HotKnots: N/A Pknots: N/A Sensitivity HotKnots: N/A Pknots: N/A Positive Predictive Value HotKnots: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Cylofold vs Pknots Matthews Correlation Coefficient Cylofold: N/A Pknots: N/A Sensitivity Cylofold: N/A Pknots: N/A Positive Predictive Value Cylofold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs MCFold Matthews Correlation Coefficient Pknots: N/A MCFold: N/A Sensitivity Pknots: N/A MCFold: N/A Positive Predictive Value Pknots: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Pknots Matthews Correlation Coefficient Vsfold5: N/A Pknots: N/A Sensitivity Vsfold5: N/A Pknots: N/A Positive Predictive Value Vsfold5: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Vsfold4 Matthews Correlation Coefficient Pknots: N/A Vsfold4: N/A Sensitivity Pknots: N/A Vsfold4: N/A Positive Predictive Value Pknots: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Carnac(seed) Matthews Correlation Coefficient Pknots: N/A Carnac(seed): N/A Sensitivity Pknots: N/A Carnac(seed): N/A Positive Predictive Value Pknots: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Pknots Matthews Correlation Coefficient RNASampler(20): N/A Pknots: N/A Sensitivity RNASampler(20): N/A Pknots: N/A Positive Predictive Value RNASampler(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs CMfinder(20) Matthews Correlation Coefficient Pknots: N/A CMfinder(20): N/A Sensitivity Pknots: N/A CMfinder(20): N/A Positive Predictive Value Pknots: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Pknots Matthews Correlation Coefficient PPfold(seed): N/A Pknots: N/A Sensitivity PPfold(seed): N/A Pknots: N/A Positive Predictive Value PPfold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Pknots Matthews Correlation Coefficient RDfolder: N/A Pknots: N/A Sensitivity RDfolder: N/A Pknots: N/A Positive Predictive Value RDfolder: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Pknots Matthews Correlation Coefficient TurboFold(seed): N/A Pknots: N/A Sensitivity TurboFold(seed): N/A Pknots: N/A Positive Predictive Value TurboFold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Pknots Matthews Correlation Coefficient RNASampler(seed): N/A Pknots: N/A Sensitivity RNASampler(seed): N/A Pknots: N/A Positive Predictive Value RNASampler(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNASLOpt Matthews Correlation Coefficient Pknots: N/A RNASLOpt: N/A Sensitivity Pknots: N/A RNASLOpt: N/A Positive Predictive Value Pknots: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Murlet(20) Matthews Correlation Coefficient Pknots: N/A Murlet(20): N/A Sensitivity Pknots: N/A Murlet(20): N/A Positive Predictive Value Pknots: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs Alterna Matthews Correlation Coefficient Pknots: N/A Alterna: N/A Sensitivity Pknots: N/A Alterna: N/A Positive Predictive Value Pknots: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Pknots Matthews Correlation Coefficient PPfold(20): N/A Pknots: N/A Sensitivity PPfold(20): N/A Pknots: N/A Positive Predictive Value PPfold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Pknots vs RNAwolf Matthews Correlation Coefficient Pknots: N/A RNAwolf: N/A Sensitivity Pknots: N/A RNAwolf: N/A Positive Predictive Value Pknots: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Pknots Matthews Correlation Coefficient Mastr(20): N/A Pknots: N/A Sensitivity Mastr(20): N/A Pknots: N/A Positive Predictive Value Mastr(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Cylofold	0 Cylofold vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Cylofold: N/A PETfold_pre2.0(seed): N/A Sensitivity Cylofold: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Cylofold: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs ContextFold Matthews Correlation Coefficient Cylofold: N/A ContextFold: N/A Sensitivity Cylofold: N/A ContextFold: N/A Positive Predictive Value Cylofold: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Cylofold Matthews Correlation Coefficient CentroidAlifold(seed): N/A Cylofold: N/A Sensitivity CentroidAlifold(seed): N/A Cylofold: N/A Positive Predictive Value CentroidAlifold(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs PETfold_pre2.0(20) Matthews Correlation Coefficient Cylofold: N/A PETfold_pre2.0(20): N/A Sensitivity Cylofold: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Cylofold: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CentroidAlifold(20) Matthews Correlation Coefficient Cylofold: N/A CentroidAlifold(20): N/A Sensitivity Cylofold: N/A CentroidAlifold(20): N/A Positive Predictive Value Cylofold: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAalifold(seed) Matthews Correlation Coefficient Cylofold: N/A RNAalifold(seed): N/A Sensitivity Cylofold: N/A RNAalifold(seed): N/A Positive Predictive Value Cylofold: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAalifold(20) Matthews Correlation Coefficient Cylofold: N/A RNAalifold(20): N/A Sensitivity Cylofold: N/A RNAalifold(20): N/A Positive Predictive Value Cylofold: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs MXScarna(seed) Matthews Correlation Coefficient Cylofold: N/A MXScarna(seed): N/A Sensitivity Cylofold: N/A MXScarna(seed): N/A Positive Predictive Value Cylofold: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs MXScarna(20) Matthews Correlation Coefficient Cylofold: N/A MXScarna(20): N/A Sensitivity Cylofold: N/A MXScarna(20): N/A Positive Predictive Value Cylofold: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Carnac(20) Matthews Correlation Coefficient Cylofold: N/A Carnac(20): N/A Sensitivity Cylofold: N/A Carnac(20): N/A Positive Predictive Value Cylofold: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs IPknot Matthews Correlation Coefficient Cylofold: N/A IPknot: N/A Sensitivity Cylofold: N/A IPknot: N/A Positive Predictive Value Cylofold: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CentroidFold Matthews Correlation Coefficient Cylofold: N/A CentroidFold: N/A Sensitivity Cylofold: N/A CentroidFold: N/A Positive Predictive Value Cylofold: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Contrafold Matthews Correlation Coefficient Cylofold: N/A Contrafold: N/A Sensitivity Cylofold: N/A Contrafold: N/A Positive Predictive Value Cylofold: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Cylofold Matthews Correlation Coefficient RSpredict(seed): N/A Cylofold: N/A Sensitivity RSpredict(seed): N/A Cylofold: N/A Positive Predictive Value RSpredict(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Cylofold Matthews Correlation Coefficient RSpredict(20): N/A Cylofold: N/A Sensitivity RSpredict(20): N/A Cylofold: N/A Positive Predictive Value RSpredict(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Sfold Matthews Correlation Coefficient Cylofold: N/A Sfold: N/A Sensitivity Cylofold: N/A Sfold: N/A Positive Predictive Value Cylofold: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Cylofold Matthews Correlation Coefficient MaxExpect: N/A Cylofold: N/A Sensitivity MaxExpect: N/A Cylofold: N/A Positive Predictive Value MaxExpect: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs ProbKnot Matthews Correlation Coefficient Cylofold: N/A ProbKnot: N/A Sensitivity Cylofold: N/A ProbKnot: N/A Positive Predictive Value Cylofold: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Cylofold Matthews Correlation Coefficient UNAFold: N/A Cylofold: N/A Sensitivity UNAFold: N/A Cylofold: N/A Positive Predictive Value UNAFold: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CRWrnafold Matthews Correlation Coefficient Cylofold: N/A CRWrnafold: N/A Sensitivity Cylofold: N/A CRWrnafold: N/A Positive Predictive Value Cylofold: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Afold Matthews Correlation Coefficient Cylofold: N/A Afold: N/A Sensitivity Cylofold: N/A Afold: N/A Positive Predictive Value Cylofold: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Cylofold Matthews Correlation Coefficient Fold: N/A Cylofold: N/A Sensitivity Fold: N/A Cylofold: N/A Positive Predictive Value Fold: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAfold Matthews Correlation Coefficient Cylofold: N/A RNAfold: N/A Sensitivity Cylofold: N/A RNAfold: N/A Positive Predictive Value Cylofold: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Cylofold Matthews Correlation Coefficient PknotsRG: N/A Cylofold: N/A Sensitivity PknotsRG: N/A Cylofold: N/A Positive Predictive Value PknotsRG: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Murlet(seed) Matthews Correlation Coefficient Cylofold: N/A Murlet(seed): N/A Sensitivity Cylofold: N/A Murlet(seed): N/A Positive Predictive Value Cylofold: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs McQFold Matthews Correlation Coefficient Cylofold: N/A McQFold: N/A Sensitivity Cylofold: N/A McQFold: N/A Positive Predictive Value Cylofold: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Cylofold Matthews Correlation Coefficient NanoFolder: N/A Cylofold: N/A Sensitivity NanoFolder: N/A Cylofold: N/A Positive Predictive Value NanoFolder: N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CentroidHomfold‑LAST Matthews Correlation Coefficient Cylofold: N/A CentroidHomfold‑LAST: N/A Sensitivity Cylofold: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Cylofold: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CMfinder(seed) Matthews Correlation Coefficient Cylofold: N/A CMfinder(seed): N/A Sensitivity Cylofold: N/A CMfinder(seed): N/A Positive Predictive Value Cylofold: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAshapes Matthews Correlation Coefficient Cylofold: N/A RNAshapes: N/A Sensitivity Cylofold: N/A RNAshapes: N/A Positive Predictive Value Cylofold: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Multilign(seed) Matthews Correlation Coefficient Cylofold: N/A Multilign(seed): N/A Sensitivity Cylofold: N/A Multilign(seed): N/A Positive Predictive Value Cylofold: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Multilign(20) Matthews Correlation Coefficient Cylofold: N/A Multilign(20): N/A Sensitivity Cylofold: N/A Multilign(20): N/A Positive Predictive Value Cylofold: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs TurboFold(20) Matthews Correlation Coefficient Cylofold: N/A TurboFold(20): N/A Sensitivity Cylofold: N/A TurboFold(20): N/A Positive Predictive Value Cylofold: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Mastr(seed) Matthews Correlation Coefficient Cylofold: N/A Mastr(seed): N/A Sensitivity Cylofold: N/A Mastr(seed): N/A Positive Predictive Value Cylofold: N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAsubopt Matthews Correlation Coefficient Cylofold: N/A RNAsubopt: N/A Sensitivity Cylofold: N/A RNAsubopt: N/A Positive Predictive Value Cylofold: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs HotKnots Matthews Correlation Coefficient Cylofold: N/A HotKnots: N/A Sensitivity Cylofold: N/A HotKnots: N/A Positive Predictive Value Cylofold: N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Pknots Matthews Correlation Coefficient Cylofold: N/A Pknots: N/A Sensitivity Cylofold: N/A Pknots: N/A Positive Predictive Value Cylofold: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Cylofold vs MCFold Matthews Correlation Coefficient Cylofold: N/A MCFold: N/A Sensitivity Cylofold: N/A MCFold: N/A Positive Predictive Value Cylofold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Vsfold5 Matthews Correlation Coefficient Cylofold: N/A Vsfold5: N/A Sensitivity Cylofold: N/A Vsfold5: N/A Positive Predictive Value Cylofold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Vsfold4 Matthews Correlation Coefficient Cylofold: N/A Vsfold4: N/A Sensitivity Cylofold: N/A Vsfold4: N/A Positive Predictive Value Cylofold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Carnac(seed) Matthews Correlation Coefficient Cylofold: N/A Carnac(seed): N/A Sensitivity Cylofold: N/A Carnac(seed): N/A Positive Predictive Value Cylofold: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Cylofold Matthews Correlation Coefficient RNASampler(20): N/A Cylofold: N/A Sensitivity RNASampler(20): N/A Cylofold: N/A Positive Predictive Value RNASampler(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs CMfinder(20) Matthews Correlation Coefficient Cylofold: N/A CMfinder(20): N/A Sensitivity Cylofold: N/A CMfinder(20): N/A Positive Predictive Value Cylofold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs PPfold(seed) Matthews Correlation Coefficient Cylofold: N/A PPfold(seed): N/A Sensitivity Cylofold: N/A PPfold(seed): N/A Positive Predictive Value Cylofold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RDfolder Matthews Correlation Coefficient Cylofold: N/A RDfolder: N/A Sensitivity Cylofold: N/A RDfolder: N/A Positive Predictive Value Cylofold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Cylofold Matthews Correlation Coefficient TurboFold(seed): N/A Cylofold: N/A Sensitivity TurboFold(seed): N/A Cylofold: N/A Positive Predictive Value TurboFold(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Cylofold Matthews Correlation Coefficient RNASampler(seed): N/A Cylofold: N/A Sensitivity RNASampler(seed): N/A Cylofold: N/A Positive Predictive Value RNASampler(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNASLOpt Matthews Correlation Coefficient Cylofold: N/A RNASLOpt: N/A Sensitivity Cylofold: N/A RNASLOpt: N/A Positive Predictive Value Cylofold: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Murlet(20) Matthews Correlation Coefficient Cylofold: N/A Murlet(20): N/A Sensitivity Cylofold: N/A Murlet(20): N/A Positive Predictive Value Cylofold: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs Alterna Matthews Correlation Coefficient Cylofold: N/A Alterna: N/A Sensitivity Cylofold: N/A Alterna: N/A Positive Predictive Value Cylofold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs PPfold(20) Matthews Correlation Coefficient Cylofold: N/A PPfold(20): N/A Sensitivity Cylofold: N/A PPfold(20): N/A Positive Predictive Value Cylofold: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Cylofold vs RNAwolf Matthews Correlation Coefficient Cylofold: N/A RNAwolf: N/A Sensitivity Cylofold: N/A RNAwolf: N/A Positive Predictive Value Cylofold: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Cylofold Matthews Correlation Coefficient Mastr(20): N/A Cylofold: N/A Sensitivity Mastr(20): N/A Cylofold: N/A Positive Predictive Value Mastr(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
MCFold	0 PETfold_pre2.0(seed) vs MCFold Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A MCFold: N/A Sensitivity PETfold_pre2.0(seed): N/A MCFold: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs MCFold Matthews Correlation Coefficient ContextFold: N/A MCFold: N/A Sensitivity ContextFold: N/A MCFold: N/A Positive Predictive Value ContextFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs MCFold Matthews Correlation Coefficient CentroidAlifold(seed): N/A MCFold: N/A Sensitivity CentroidAlifold(seed): N/A MCFold: N/A Positive Predictive Value CentroidAlifold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs MCFold Matthews Correlation Coefficient PETfold_pre2.0(20): N/A MCFold: N/A Sensitivity PETfold_pre2.0(20): N/A MCFold: N/A Positive Predictive Value PETfold_pre2.0(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs MCFold Matthews Correlation Coefficient CentroidAlifold(20): N/A MCFold: N/A Sensitivity CentroidAlifold(20): N/A MCFold: N/A Positive Predictive Value CentroidAlifold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs MCFold Matthews Correlation Coefficient RNAalifold(seed): N/A MCFold: N/A Sensitivity RNAalifold(seed): N/A MCFold: N/A Positive Predictive Value RNAalifold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs MCFold Matthews Correlation Coefficient RNAalifold(20): N/A MCFold: N/A Sensitivity RNAalifold(20): N/A MCFold: N/A Positive Predictive Value RNAalifold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(seed) vs MCFold Matthews Correlation Coefficient MXScarna(seed): N/A MCFold: N/A Sensitivity MXScarna(seed): N/A MCFold: N/A Positive Predictive Value MXScarna(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(20) vs MCFold Matthews Correlation Coefficient MXScarna(20): N/A MCFold: N/A Sensitivity MXScarna(20): N/A MCFold: N/A Positive Predictive Value MXScarna(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs MCFold Matthews Correlation Coefficient Carnac(20): N/A MCFold: N/A Sensitivity Carnac(20): N/A MCFold: N/A Positive Predictive Value Carnac(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MCFold vs IPknot Matthews Correlation Coefficient MCFold: N/A IPknot: N/A Sensitivity MCFold: N/A IPknot: N/A Positive Predictive Value MCFold: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs MCFold Matthews Correlation Coefficient CentroidFold: N/A MCFold: N/A Sensitivity CentroidFold: N/A MCFold: N/A Positive Predictive Value CentroidFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs MCFold Matthews Correlation Coefficient Contrafold: N/A MCFold: N/A Sensitivity Contrafold: N/A MCFold: N/A Positive Predictive Value Contrafold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs MCFold Matthews Correlation Coefficient RSpredict(seed): N/A MCFold: N/A Sensitivity RSpredict(seed): N/A MCFold: N/A Positive Predictive Value RSpredict(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs MCFold Matthews Correlation Coefficient RSpredict(20): N/A MCFold: N/A Sensitivity RSpredict(20): N/A MCFold: N/A Positive Predictive Value RSpredict(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Sfold vs MCFold Matthews Correlation Coefficient Sfold: N/A MCFold: N/A Sensitivity Sfold: N/A MCFold: N/A Positive Predictive Value Sfold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs MCFold Matthews Correlation Coefficient MaxExpect: N/A MCFold: N/A Sensitivity MaxExpect: N/A MCFold: N/A Positive Predictive Value MaxExpect: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs MCFold Matthews Correlation Coefficient ProbKnot: N/A MCFold: N/A Sensitivity ProbKnot: N/A MCFold: N/A Positive Predictive Value ProbKnot: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs MCFold Matthews Correlation Coefficient UNAFold: N/A MCFold: N/A Sensitivity UNAFold: N/A MCFold: N/A Positive Predictive Value UNAFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CRWrnafold vs MCFold Matthews Correlation Coefficient CRWrnafold: N/A MCFold: N/A Sensitivity CRWrnafold: N/A MCFold: N/A Positive Predictive Value CRWrnafold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs MCFold Matthews Correlation Coefficient Afold: N/A MCFold: N/A Sensitivity Afold: N/A MCFold: N/A Positive Predictive Value Afold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs MCFold Matthews Correlation Coefficient Fold: N/A MCFold: N/A Sensitivity Fold: N/A MCFold: N/A Positive Predictive Value Fold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAfold vs MCFold Matthews Correlation Coefficient RNAfold: N/A MCFold: N/A Sensitivity RNAfold: N/A MCFold: N/A Positive Predictive Value RNAfold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs MCFold Matthews Correlation Coefficient PknotsRG: N/A MCFold: N/A Sensitivity PknotsRG: N/A MCFold: N/A Positive Predictive Value PknotsRG: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs MCFold Matthews Correlation Coefficient Murlet(seed): N/A MCFold: N/A Sensitivity Murlet(seed): N/A MCFold: N/A Positive Predictive Value Murlet(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs MCFold Matthews Correlation Coefficient McQFold: N/A MCFold: N/A Sensitivity McQFold: N/A MCFold: N/A Positive Predictive Value McQFold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs MCFold Matthews Correlation Coefficient NanoFolder: N/A MCFold: N/A Sensitivity NanoFolder: N/A MCFold: N/A Positive Predictive Value NanoFolder: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs MCFold Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A MCFold: N/A Sensitivity CentroidHomfold‑LAST: N/A MCFold: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs MCFold Matthews Correlation Coefficient CMfinder(seed): N/A MCFold: N/A Sensitivity CMfinder(seed): N/A MCFold: N/A Positive Predictive Value CMfinder(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs MCFold Matthews Correlation Coefficient RNAshapes: N/A MCFold: N/A Sensitivity RNAshapes: N/A MCFold: N/A Positive Predictive Value RNAshapes: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs MCFold Matthews Correlation Coefficient Multilign(seed): N/A MCFold: N/A Sensitivity Multilign(seed): N/A MCFold: N/A Positive Predictive Value Multilign(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(20) vs MCFold Matthews Correlation Coefficient Multilign(20): N/A MCFold: N/A Sensitivity Multilign(20): N/A MCFold: N/A Positive Predictive Value Multilign(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs MCFold Matthews Correlation Coefficient TurboFold(20): N/A MCFold: N/A Sensitivity TurboFold(20): N/A MCFold: N/A Positive Predictive Value TurboFold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs MCFold Matthews Correlation Coefficient Mastr(seed): N/A MCFold: N/A Sensitivity Mastr(seed): N/A MCFold: N/A Positive Predictive Value Mastr(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs MCFold Matthews Correlation Coefficient RNAsubopt: N/A MCFold: N/A Sensitivity RNAsubopt: N/A MCFold: N/A Positive Predictive Value RNAsubopt: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs MCFold Matthews Correlation Coefficient HotKnots: N/A MCFold: N/A Sensitivity HotKnots: N/A MCFold: N/A Positive Predictive Value HotKnots: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs MCFold Matthews Correlation Coefficient Pknots: N/A MCFold: N/A Sensitivity Pknots: N/A MCFold: N/A Positive Predictive Value Pknots: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs MCFold Matthews Correlation Coefficient Cylofold: N/A MCFold: N/A Sensitivity Cylofold: N/A MCFold: N/A Positive Predictive Value Cylofold: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Vsfold5 vs MCFold Matthews Correlation Coefficient Vsfold5: N/A MCFold: N/A Sensitivity Vsfold5: N/A MCFold: N/A Positive Predictive Value Vsfold5: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs MCFold Matthews Correlation Coefficient Vsfold4: N/A MCFold: N/A Sensitivity Vsfold4: N/A MCFold: N/A Positive Predictive Value Vsfold4: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs MCFold Matthews Correlation Coefficient Carnac(seed): N/A MCFold: N/A Sensitivity Carnac(seed): N/A MCFold: N/A Positive Predictive Value Carnac(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs MCFold Matthews Correlation Coefficient RNASampler(20): N/A MCFold: N/A Sensitivity RNASampler(20): N/A MCFold: N/A Positive Predictive Value RNASampler(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? MCFold vs CMfinder(20) Matthews Correlation Coefficient MCFold: N/A CMfinder(20): N/A Sensitivity MCFold: N/A CMfinder(20): N/A Positive Predictive Value MCFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs MCFold Matthews Correlation Coefficient PPfold(seed): N/A MCFold: N/A Sensitivity PPfold(seed): N/A MCFold: N/A Positive Predictive Value PPfold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs MCFold Matthews Correlation Coefficient RDfolder: N/A MCFold: N/A Sensitivity RDfolder: N/A MCFold: N/A Positive Predictive Value RDfolder: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs MCFold Matthews Correlation Coefficient TurboFold(seed): N/A MCFold: N/A Sensitivity TurboFold(seed): N/A MCFold: N/A Positive Predictive Value TurboFold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs MCFold Matthews Correlation Coefficient RNASampler(seed): N/A MCFold: N/A Sensitivity RNASampler(seed): N/A MCFold: N/A Positive Predictive Value RNASampler(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASLOpt vs MCFold Matthews Correlation Coefficient RNASLOpt: N/A MCFold: N/A Sensitivity RNASLOpt: N/A MCFold: N/A Positive Predictive Value RNASLOpt: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs MCFold Matthews Correlation Coefficient Murlet(20): N/A MCFold: N/A Sensitivity Murlet(20): N/A MCFold: N/A Positive Predictive Value Murlet(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs MCFold Matthews Correlation Coefficient Alterna: N/A MCFold: N/A Sensitivity Alterna: N/A MCFold: N/A Positive Predictive Value Alterna: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs MCFold Matthews Correlation Coefficient PPfold(20): N/A MCFold: N/A Sensitivity PPfold(20): N/A MCFold: N/A Positive Predictive Value PPfold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs MCFold Matthews Correlation Coefficient RNAwolf: N/A MCFold: N/A Sensitivity RNAwolf: N/A MCFold: N/A Positive Predictive Value RNAwolf: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs MCFold Matthews Correlation Coefficient Mastr(20): N/A MCFold: N/A Sensitivity Mastr(20): N/A MCFold: N/A Positive Predictive Value Mastr(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Vsfold5	0 Vsfold5 vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Vsfold5: N/A PETfold_pre2.0(seed): N/A Sensitivity Vsfold5: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Vsfold5: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs ContextFold Matthews Correlation Coefficient Vsfold5: N/A ContextFold: N/A Sensitivity Vsfold5: N/A ContextFold: N/A Positive Predictive Value Vsfold5: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Vsfold5 Matthews Correlation Coefficient CentroidAlifold(seed): N/A Vsfold5: N/A Sensitivity CentroidAlifold(seed): N/A Vsfold5: N/A Positive Predictive Value CentroidAlifold(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs PETfold_pre2.0(20) Matthews Correlation Coefficient Vsfold5: N/A PETfold_pre2.0(20): N/A Sensitivity Vsfold5: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Vsfold5: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CentroidAlifold(20) Matthews Correlation Coefficient Vsfold5: N/A CentroidAlifold(20): N/A Sensitivity Vsfold5: N/A CentroidAlifold(20): N/A Positive Predictive Value Vsfold5: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAalifold(seed) Matthews Correlation Coefficient Vsfold5: N/A RNAalifold(seed): N/A Sensitivity Vsfold5: N/A RNAalifold(seed): N/A Positive Predictive Value Vsfold5: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAalifold(20) Matthews Correlation Coefficient Vsfold5: N/A RNAalifold(20): N/A Sensitivity Vsfold5: N/A RNAalifold(20): N/A Positive Predictive Value Vsfold5: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs MXScarna(seed) Matthews Correlation Coefficient Vsfold5: N/A MXScarna(seed): N/A Sensitivity Vsfold5: N/A MXScarna(seed): N/A Positive Predictive Value Vsfold5: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs MXScarna(20) Matthews Correlation Coefficient Vsfold5: N/A MXScarna(20): N/A Sensitivity Vsfold5: N/A MXScarna(20): N/A Positive Predictive Value Vsfold5: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Carnac(20) Matthews Correlation Coefficient Vsfold5: N/A Carnac(20): N/A Sensitivity Vsfold5: N/A Carnac(20): N/A Positive Predictive Value Vsfold5: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs IPknot Matthews Correlation Coefficient Vsfold5: N/A IPknot: N/A Sensitivity Vsfold5: N/A IPknot: N/A Positive Predictive Value Vsfold5: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CentroidFold Matthews Correlation Coefficient Vsfold5: N/A CentroidFold: N/A Sensitivity Vsfold5: N/A CentroidFold: N/A Positive Predictive Value Vsfold5: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Contrafold Matthews Correlation Coefficient Vsfold5: N/A Contrafold: N/A Sensitivity Vsfold5: N/A Contrafold: N/A Positive Predictive Value Vsfold5: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Vsfold5 Matthews Correlation Coefficient RSpredict(seed): N/A Vsfold5: N/A Sensitivity RSpredict(seed): N/A Vsfold5: N/A Positive Predictive Value RSpredict(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Vsfold5 Matthews Correlation Coefficient RSpredict(20): N/A Vsfold5: N/A Sensitivity RSpredict(20): N/A Vsfold5: N/A Positive Predictive Value RSpredict(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Sfold Matthews Correlation Coefficient Vsfold5: N/A Sfold: N/A Sensitivity Vsfold5: N/A Sfold: N/A Positive Predictive Value Vsfold5: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Vsfold5 Matthews Correlation Coefficient MaxExpect: N/A Vsfold5: N/A Sensitivity MaxExpect: N/A Vsfold5: N/A Positive Predictive Value MaxExpect: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs ProbKnot Matthews Correlation Coefficient Vsfold5: N/A ProbKnot: N/A Sensitivity Vsfold5: N/A ProbKnot: N/A Positive Predictive Value Vsfold5: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Vsfold5 Matthews Correlation Coefficient UNAFold: N/A Vsfold5: N/A Sensitivity UNAFold: N/A Vsfold5: N/A Positive Predictive Value UNAFold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CRWrnafold Matthews Correlation Coefficient Vsfold5: N/A CRWrnafold: N/A Sensitivity Vsfold5: N/A CRWrnafold: N/A Positive Predictive Value Vsfold5: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Afold Matthews Correlation Coefficient Vsfold5: N/A Afold: N/A Sensitivity Vsfold5: N/A Afold: N/A Positive Predictive Value Vsfold5: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Vsfold5 Matthews Correlation Coefficient Fold: N/A Vsfold5: N/A Sensitivity Fold: N/A Vsfold5: N/A Positive Predictive Value Fold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAfold Matthews Correlation Coefficient Vsfold5: N/A RNAfold: N/A Sensitivity Vsfold5: N/A RNAfold: N/A Positive Predictive Value Vsfold5: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Vsfold5 Matthews Correlation Coefficient PknotsRG: N/A Vsfold5: N/A Sensitivity PknotsRG: N/A Vsfold5: N/A Positive Predictive Value PknotsRG: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Murlet(seed) Matthews Correlation Coefficient Vsfold5: N/A Murlet(seed): N/A Sensitivity Vsfold5: N/A Murlet(seed): N/A Positive Predictive Value Vsfold5: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs McQFold Matthews Correlation Coefficient Vsfold5: N/A McQFold: N/A Sensitivity Vsfold5: N/A McQFold: N/A Positive Predictive Value Vsfold5: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Vsfold5 Matthews Correlation Coefficient NanoFolder: N/A Vsfold5: N/A Sensitivity NanoFolder: N/A Vsfold5: N/A Positive Predictive Value NanoFolder: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CentroidHomfold‑LAST Matthews Correlation Coefficient Vsfold5: N/A CentroidHomfold‑LAST: N/A Sensitivity Vsfold5: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Vsfold5: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CMfinder(seed) Matthews Correlation Coefficient Vsfold5: N/A CMfinder(seed): N/A Sensitivity Vsfold5: N/A CMfinder(seed): N/A Positive Predictive Value Vsfold5: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAshapes Matthews Correlation Coefficient Vsfold5: N/A RNAshapes: N/A Sensitivity Vsfold5: N/A RNAshapes: N/A Positive Predictive Value Vsfold5: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Multilign(seed) Matthews Correlation Coefficient Vsfold5: N/A Multilign(seed): N/A Sensitivity Vsfold5: N/A Multilign(seed): N/A Positive Predictive Value Vsfold5: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Multilign(20) Matthews Correlation Coefficient Vsfold5: N/A Multilign(20): N/A Sensitivity Vsfold5: N/A Multilign(20): N/A Positive Predictive Value Vsfold5: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs TurboFold(20) Matthews Correlation Coefficient Vsfold5: N/A TurboFold(20): N/A Sensitivity Vsfold5: N/A TurboFold(20): N/A Positive Predictive Value Vsfold5: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Vsfold5 Matthews Correlation Coefficient Mastr(seed): N/A Vsfold5: N/A Sensitivity Mastr(seed): N/A Vsfold5: N/A Positive Predictive Value Mastr(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAsubopt Matthews Correlation Coefficient Vsfold5: N/A RNAsubopt: N/A Sensitivity Vsfold5: N/A RNAsubopt: N/A Positive Predictive Value Vsfold5: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Vsfold5 Matthews Correlation Coefficient HotKnots: N/A Vsfold5: N/A Sensitivity HotKnots: N/A Vsfold5: N/A Positive Predictive Value HotKnots: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Pknots Matthews Correlation Coefficient Vsfold5: N/A Pknots: N/A Sensitivity Vsfold5: N/A Pknots: N/A Positive Predictive Value Vsfold5: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Vsfold5 Matthews Correlation Coefficient Cylofold: N/A Vsfold5: N/A Sensitivity Cylofold: N/A Vsfold5: N/A Positive Predictive Value Cylofold: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs MCFold Matthews Correlation Coefficient Vsfold5: N/A MCFold: N/A Sensitivity Vsfold5: N/A MCFold: N/A Positive Predictive Value Vsfold5: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Vsfold5 vs Vsfold4 Matthews Correlation Coefficient Vsfold5: N/A Vsfold4: N/A Sensitivity Vsfold5: N/A Vsfold4: N/A Positive Predictive Value Vsfold5: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Carnac(seed) Matthews Correlation Coefficient Vsfold5: N/A Carnac(seed): N/A Sensitivity Vsfold5: N/A Carnac(seed): N/A Positive Predictive Value Vsfold5: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Vsfold5 Matthews Correlation Coefficient RNASampler(20): N/A Vsfold5: N/A Sensitivity RNASampler(20): N/A Vsfold5: N/A Positive Predictive Value RNASampler(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs CMfinder(20) Matthews Correlation Coefficient Vsfold5: N/A CMfinder(20): N/A Sensitivity Vsfold5: N/A CMfinder(20): N/A Positive Predictive Value Vsfold5: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs PPfold(seed) Matthews Correlation Coefficient Vsfold5: N/A PPfold(seed): N/A Sensitivity Vsfold5: N/A PPfold(seed): N/A Positive Predictive Value Vsfold5: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Vsfold5 Matthews Correlation Coefficient RDfolder: N/A Vsfold5: N/A Sensitivity RDfolder: N/A Vsfold5: N/A Positive Predictive Value RDfolder: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Vsfold5 Matthews Correlation Coefficient TurboFold(seed): N/A Vsfold5: N/A Sensitivity TurboFold(seed): N/A Vsfold5: N/A Positive Predictive Value TurboFold(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Vsfold5 Matthews Correlation Coefficient RNASampler(seed): N/A Vsfold5: N/A Sensitivity RNASampler(seed): N/A Vsfold5: N/A Positive Predictive Value RNASampler(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNASLOpt Matthews Correlation Coefficient Vsfold5: N/A RNASLOpt: N/A Sensitivity Vsfold5: N/A RNASLOpt: N/A Positive Predictive Value Vsfold5: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Murlet(20) Matthews Correlation Coefficient Vsfold5: N/A Murlet(20): N/A Sensitivity Vsfold5: N/A Murlet(20): N/A Positive Predictive Value Vsfold5: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs Alterna Matthews Correlation Coefficient Vsfold5: N/A Alterna: N/A Sensitivity Vsfold5: N/A Alterna: N/A Positive Predictive Value Vsfold5: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Vsfold5 Matthews Correlation Coefficient PPfold(20): N/A Vsfold5: N/A Sensitivity PPfold(20): N/A Vsfold5: N/A Positive Predictive Value PPfold(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold5 vs RNAwolf Matthews Correlation Coefficient Vsfold5: N/A RNAwolf: N/A Sensitivity Vsfold5: N/A RNAwolf: N/A Positive Predictive Value Vsfold5: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Vsfold5 Matthews Correlation Coefficient Mastr(20): N/A Vsfold5: N/A Sensitivity Mastr(20): N/A Vsfold5: N/A Positive Predictive Value Mastr(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Vsfold4	0 Vsfold4 vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Vsfold4: N/A PETfold_pre2.0(seed): N/A Sensitivity Vsfold4: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Vsfold4: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs Vsfold4 Matthews Correlation Coefficient ContextFold: N/A Vsfold4: N/A Sensitivity ContextFold: N/A Vsfold4: N/A Positive Predictive Value ContextFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Vsfold4 Matthews Correlation Coefficient CentroidAlifold(seed): N/A Vsfold4: N/A Sensitivity CentroidAlifold(seed): N/A Vsfold4: N/A Positive Predictive Value CentroidAlifold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs PETfold_pre2.0(20) Matthews Correlation Coefficient Vsfold4: N/A PETfold_pre2.0(20): N/A Sensitivity Vsfold4: N/A PETfold_pre2.0(20): N/A Positive Predictive Value Vsfold4: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CentroidAlifold(20) Matthews Correlation Coefficient Vsfold4: N/A CentroidAlifold(20): N/A Sensitivity Vsfold4: N/A CentroidAlifold(20): N/A Positive Predictive Value Vsfold4: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNAalifold(seed) Matthews Correlation Coefficient Vsfold4: N/A RNAalifold(seed): N/A Sensitivity Vsfold4: N/A RNAalifold(seed): N/A Positive Predictive Value Vsfold4: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs Vsfold4 Matthews Correlation Coefficient RNAalifold(20): N/A Vsfold4: N/A Sensitivity RNAalifold(20): N/A Vsfold4: N/A Positive Predictive Value RNAalifold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs MXScarna(seed) Matthews Correlation Coefficient Vsfold4: N/A MXScarna(seed): N/A Sensitivity Vsfold4: N/A MXScarna(seed): N/A Positive Predictive Value Vsfold4: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs MXScarna(20) Matthews Correlation Coefficient Vsfold4: N/A MXScarna(20): N/A Sensitivity Vsfold4: N/A MXScarna(20): N/A Positive Predictive Value Vsfold4: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Carnac(20) Matthews Correlation Coefficient Vsfold4: N/A Carnac(20): N/A Sensitivity Vsfold4: N/A Carnac(20): N/A Positive Predictive Value Vsfold4: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs IPknot Matthews Correlation Coefficient Vsfold4: N/A IPknot: N/A Sensitivity Vsfold4: N/A IPknot: N/A Positive Predictive Value Vsfold4: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CentroidFold Matthews Correlation Coefficient Vsfold4: N/A CentroidFold: N/A Sensitivity Vsfold4: N/A CentroidFold: N/A Positive Predictive Value Vsfold4: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Contrafold Matthews Correlation Coefficient Vsfold4: N/A Contrafold: N/A Sensitivity Vsfold4: N/A Contrafold: N/A Positive Predictive Value Vsfold4: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Vsfold4 Matthews Correlation Coefficient RSpredict(seed): N/A Vsfold4: N/A Sensitivity RSpredict(seed): N/A Vsfold4: N/A Positive Predictive Value RSpredict(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Vsfold4 Matthews Correlation Coefficient RSpredict(20): N/A Vsfold4: N/A Sensitivity RSpredict(20): N/A Vsfold4: N/A Positive Predictive Value RSpredict(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Sfold Matthews Correlation Coefficient Vsfold4: N/A Sfold: N/A Sensitivity Vsfold4: N/A Sfold: N/A Positive Predictive Value Vsfold4: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Vsfold4 Matthews Correlation Coefficient MaxExpect: N/A Vsfold4: N/A Sensitivity MaxExpect: N/A Vsfold4: N/A Positive Predictive Value MaxExpect: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs Vsfold4 Matthews Correlation Coefficient ProbKnot: N/A Vsfold4: N/A Sensitivity ProbKnot: N/A Vsfold4: N/A Positive Predictive Value ProbKnot: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Vsfold4 Matthews Correlation Coefficient UNAFold: N/A Vsfold4: N/A Sensitivity UNAFold: N/A Vsfold4: N/A Positive Predictive Value UNAFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CRWrnafold Matthews Correlation Coefficient Vsfold4: N/A CRWrnafold: N/A Sensitivity Vsfold4: N/A CRWrnafold: N/A Positive Predictive Value Vsfold4: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Afold Matthews Correlation Coefficient Vsfold4: N/A Afold: N/A Sensitivity Vsfold4: N/A Afold: N/A Positive Predictive Value Vsfold4: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Vsfold4 Matthews Correlation Coefficient Fold: N/A Vsfold4: N/A Sensitivity Fold: N/A Vsfold4: N/A Positive Predictive Value Fold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNAfold Matthews Correlation Coefficient Vsfold4: N/A RNAfold: N/A Sensitivity Vsfold4: N/A RNAfold: N/A Positive Predictive Value Vsfold4: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Vsfold4 Matthews Correlation Coefficient PknotsRG: N/A Vsfold4: N/A Sensitivity PknotsRG: N/A Vsfold4: N/A Positive Predictive Value PknotsRG: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Murlet(seed) Matthews Correlation Coefficient Vsfold4: N/A Murlet(seed): N/A Sensitivity Vsfold4: N/A Murlet(seed): N/A Positive Predictive Value Vsfold4: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Vsfold4 Matthews Correlation Coefficient McQFold: N/A Vsfold4: N/A Sensitivity McQFold: N/A Vsfold4: N/A Positive Predictive Value McQFold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Vsfold4 Matthews Correlation Coefficient NanoFolder: N/A Vsfold4: N/A Sensitivity NanoFolder: N/A Vsfold4: N/A Positive Predictive Value NanoFolder: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CentroidHomfold‑LAST Matthews Correlation Coefficient Vsfold4: N/A CentroidHomfold‑LAST: N/A Sensitivity Vsfold4: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Vsfold4: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CMfinder(seed) Matthews Correlation Coefficient Vsfold4: N/A CMfinder(seed): N/A Sensitivity Vsfold4: N/A CMfinder(seed): N/A Positive Predictive Value Vsfold4: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNAshapes Matthews Correlation Coefficient Vsfold4: N/A RNAshapes: N/A Sensitivity Vsfold4: N/A RNAshapes: N/A Positive Predictive Value Vsfold4: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Multilign(seed) Matthews Correlation Coefficient Vsfold4: N/A Multilign(seed): N/A Sensitivity Vsfold4: N/A Multilign(seed): N/A Positive Predictive Value Vsfold4: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Multilign(20) Matthews Correlation Coefficient Vsfold4: N/A Multilign(20): N/A Sensitivity Vsfold4: N/A Multilign(20): N/A Positive Predictive Value Vsfold4: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Vsfold4 Matthews Correlation Coefficient TurboFold(20): N/A Vsfold4: N/A Sensitivity TurboFold(20): N/A Vsfold4: N/A Positive Predictive Value TurboFold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Vsfold4 Matthews Correlation Coefficient Mastr(seed): N/A Vsfold4: N/A Sensitivity Mastr(seed): N/A Vsfold4: N/A Positive Predictive Value Mastr(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNAsubopt Matthews Correlation Coefficient Vsfold4: N/A RNAsubopt: N/A Sensitivity Vsfold4: N/A RNAsubopt: N/A Positive Predictive Value Vsfold4: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Vsfold4 Matthews Correlation Coefficient HotKnots: N/A Vsfold4: N/A Sensitivity HotKnots: N/A Vsfold4: N/A Positive Predictive Value HotKnots: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Vsfold4 Matthews Correlation Coefficient Pknots: N/A Vsfold4: N/A Sensitivity Pknots: N/A Vsfold4: N/A Positive Predictive Value Pknots: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Vsfold4 Matthews Correlation Coefficient Cylofold: N/A Vsfold4: N/A Sensitivity Cylofold: N/A Vsfold4: N/A Positive Predictive Value Cylofold: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs MCFold Matthews Correlation Coefficient Vsfold4: N/A MCFold: N/A Sensitivity Vsfold4: N/A MCFold: N/A Positive Predictive Value Vsfold4: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Vsfold4 Matthews Correlation Coefficient Vsfold5: N/A Vsfold4: N/A Sensitivity Vsfold5: N/A Vsfold4: N/A Positive Predictive Value Vsfold5: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Vsfold4 vs Carnac(seed) Matthews Correlation Coefficient Vsfold4: N/A Carnac(seed): N/A Sensitivity Vsfold4: N/A Carnac(seed): N/A Positive Predictive Value Vsfold4: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Vsfold4 Matthews Correlation Coefficient RNASampler(20): N/A Vsfold4: N/A Sensitivity RNASampler(20): N/A Vsfold4: N/A Positive Predictive Value RNASampler(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs CMfinder(20) Matthews Correlation Coefficient Vsfold4: N/A CMfinder(20): N/A Sensitivity Vsfold4: N/A CMfinder(20): N/A Positive Predictive Value Vsfold4: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Vsfold4 Matthews Correlation Coefficient PPfold(seed): N/A Vsfold4: N/A Sensitivity PPfold(seed): N/A Vsfold4: N/A Positive Predictive Value PPfold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Vsfold4 Matthews Correlation Coefficient RDfolder: N/A Vsfold4: N/A Sensitivity RDfolder: N/A Vsfold4: N/A Positive Predictive Value RDfolder: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Vsfold4 Matthews Correlation Coefficient TurboFold(seed): N/A Vsfold4: N/A Sensitivity TurboFold(seed): N/A Vsfold4: N/A Positive Predictive Value TurboFold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Vsfold4 Matthews Correlation Coefficient RNASampler(seed): N/A Vsfold4: N/A Sensitivity RNASampler(seed): N/A Vsfold4: N/A Positive Predictive Value RNASampler(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNASLOpt Matthews Correlation Coefficient Vsfold4: N/A RNASLOpt: N/A Sensitivity Vsfold4: N/A RNASLOpt: N/A Positive Predictive Value Vsfold4: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Murlet(20) Matthews Correlation Coefficient Vsfold4: N/A Murlet(20): N/A Sensitivity Vsfold4: N/A Murlet(20): N/A Positive Predictive Value Vsfold4: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs Alterna Matthews Correlation Coefficient Vsfold4: N/A Alterna: N/A Sensitivity Vsfold4: N/A Alterna: N/A Positive Predictive Value Vsfold4: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Vsfold4 Matthews Correlation Coefficient PPfold(20): N/A Vsfold4: N/A Sensitivity PPfold(20): N/A Vsfold4: N/A Positive Predictive Value PPfold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Vsfold4 vs RNAwolf Matthews Correlation Coefficient Vsfold4: N/A RNAwolf: N/A Sensitivity Vsfold4: N/A RNAwolf: N/A Positive Predictive Value Vsfold4: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Vsfold4 Matthews Correlation Coefficient Mastr(20): N/A Vsfold4: N/A Sensitivity Mastr(20): N/A Vsfold4: N/A Positive Predictive Value Mastr(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Carnac(seed)	1 PETfold_pre2.0(seed) vs Carnac(seed) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.894 Carnac(seed): 0.729 Sensitivity PETfold_pre2.0(seed): 0.884 Carnac(seed): 0.570 Positive Predictive Value PETfold_pre2.0(seed): 0.904 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 ContextFold vs Carnac(seed) Matthews Correlation Coefficient ContextFold: 0.952 Carnac(seed): 0.729 Sensitivity ContextFold: 0.924 Carnac(seed): 0.570 Positive Predictive Value ContextFold: 0.981 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CentroidAlifold(seed) vs Carnac(seed) Matthews Correlation Coefficient CentroidAlifold(seed): 0.902 Carnac(seed): 0.729 Sensitivity CentroidAlifold(seed): 0.858 Carnac(seed): 0.570 Positive Predictive Value CentroidAlifold(seed): 0.949 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 PETfold_pre2.0(20) vs Carnac(seed) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.890 Carnac(seed): 0.729 Sensitivity PETfold_pre2.0(20): 0.882 Carnac(seed): 0.570 Positive Predictive Value PETfold_pre2.0(20): 0.898 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CentroidAlifold(20) vs Carnac(seed) Matthews Correlation Coefficient CentroidAlifold(20): 0.906 Carnac(seed): 0.729 Sensitivity CentroidAlifold(20): 0.860 Carnac(seed): 0.570 Positive Predictive Value CentroidAlifold(20): 0.954 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RNAalifold(seed) vs Carnac(seed) Matthews Correlation Coefficient RNAalifold(seed): 0.872 Carnac(seed): 0.729 Sensitivity RNAalifold(seed): 0.841 Carnac(seed): 0.570 Positive Predictive Value RNAalifold(seed): 0.904 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RNAalifold(20) vs Carnac(seed) Matthews Correlation Coefficient RNAalifold(20): 0.869 Carnac(seed): 0.729 Sensitivity RNAalifold(20): 0.841 Carnac(seed): 0.570 Positive Predictive Value RNAalifold(20): 0.897 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 MXScarna(seed) vs Carnac(seed) Matthews Correlation Coefficient MXScarna(seed): 0.832 Carnac(seed): 0.729 Sensitivity MXScarna(seed): 0.806 Carnac(seed): 0.570 Positive Predictive Value MXScarna(seed): 0.860 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 MXScarna(20) vs Carnac(seed) Matthews Correlation Coefficient MXScarna(20): 0.836 Carnac(seed): 0.729 Sensitivity MXScarna(20): 0.806 Carnac(seed): 0.570 Positive Predictive Value MXScarna(20): 0.868 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Carnac(20) vs Carnac(seed) Matthews Correlation Coefficient Carnac(20): 0.743 Carnac(seed): 0.729 Sensitivity Carnac(20): 0.590 Carnac(seed): 0.570 Positive Predictive Value Carnac(20): 0.938 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 IPknot vs Carnac(seed) Matthews Correlation Coefficient IPknot: 0.825 Carnac(seed): 0.729 Sensitivity IPknot: 0.769 Carnac(seed): 0.570 Positive Predictive Value IPknot: 0.887 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CentroidFold vs Carnac(seed) Matthews Correlation Coefficient CentroidFold: 0.793 Carnac(seed): 0.729 Sensitivity CentroidFold: 0.758 Carnac(seed): 0.570 Positive Predictive Value CentroidFold: 0.830 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Contrafold vs Carnac(seed) Matthews Correlation Coefficient Contrafold: 0.775 Carnac(seed): 0.729 Sensitivity Contrafold: 0.766 Carnac(seed): 0.570 Positive Predictive Value Contrafold: 0.783 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RSpredict(seed) vs Carnac(seed) Matthews Correlation Coefficient RSpredict(seed): 0.778 Carnac(seed): 0.729 Sensitivity RSpredict(seed): 0.755 Carnac(seed): 0.570 Positive Predictive Value RSpredict(seed): 0.801 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RSpredict(20) vs Carnac(seed) Matthews Correlation Coefficient RSpredict(20): 0.782 Carnac(seed): 0.729 Sensitivity RSpredict(20): 0.762 Carnac(seed): 0.570 Positive Predictive Value RSpredict(20): 0.802 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Sfold vs Carnac(seed) Matthews Correlation Coefficient Sfold: 0.798 Carnac(seed): 0.729 Sensitivity Sfold: 0.769 Carnac(seed): 0.570 Positive Predictive Value Sfold: 0.828 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Carnac(seed) vs MaxExpect Matthews Correlation Coefficient Carnac(seed): 0.729 MaxExpect: 0.706 Sensitivity Carnac(seed): 0.570 MaxExpect: 0.699 Positive Predictive Value Carnac(seed): 0.932 MaxExpect: 0.713 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Carnac(seed) vs ProbKnot Matthews Correlation Coefficient Carnac(seed): 0.729 ProbKnot: 0.689 Sensitivity Carnac(seed): 0.570 ProbKnot: 0.681 Positive Predictive Value Carnac(seed): 0.932 ProbKnot: 0.698 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 UNAFold vs Carnac(seed) Matthews Correlation Coefficient UNAFold: 0.770 Carnac(seed): 0.729 Sensitivity UNAFold: 0.758 Carnac(seed): 0.570 Positive Predictive Value UNAFold: 0.783 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Carnac(seed) vs CRWrnafold Matthews Correlation Coefficient Carnac(seed): N/A CRWrnafold: N/A Sensitivity Carnac(seed): N/A CRWrnafold: N/A Positive Predictive Value Carnac(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 Afold vs Carnac(seed) Matthews Correlation Coefficient Afold: 0.779 Carnac(seed): 0.729 Sensitivity Afold: 0.766 Carnac(seed): 0.570 Positive Predictive Value Afold: 0.792 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Carnac(seed) vs Fold Matthews Correlation Coefficient Carnac(seed): 0.729 Fold: 0.563 Sensitivity Carnac(seed): 0.570 Fold: 0.566 Positive Predictive Value Carnac(seed): 0.932 Fold: 0.562 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RNAfold vs Carnac(seed) Matthews Correlation Coefficient RNAfold: 0.777 Carnac(seed): 0.729 Sensitivity RNAfold: 0.764 Carnac(seed): 0.570 Positive Predictive Value RNAfold: 0.790 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 PknotsRG vs Carnac(seed) Matthews Correlation Coefficient PknotsRG: 0.774 Carnac(seed): 0.729 Sensitivity PknotsRG: 0.760 Carnac(seed): 0.570 Positive Predictive Value PknotsRG: 0.789 Carnac(seed): 0.932 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Murlet(seed) vs Carnac(seed) Matthews Correlation Coefficient Murlet(seed): N/A Carnac(seed): N/A Sensitivity Murlet(seed): N/A Carnac(seed): N/A Positive Predictive Value Murlet(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Carnac(seed) Matthews Correlation Coefficient McQFold: N/A Carnac(seed): N/A Sensitivity McQFold: N/A Carnac(seed): N/A Positive Predictive Value McQFold: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Carnac(seed) Matthews Correlation Coefficient NanoFolder: N/A Carnac(seed): N/A Sensitivity NanoFolder: N/A Carnac(seed): N/A Positive Predictive Value NanoFolder: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs Carnac(seed) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A Carnac(seed): N/A Sensitivity CentroidHomfold‑LAST: N/A Carnac(seed): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Carnac(seed) Matthews Correlation Coefficient CMfinder(seed): N/A Carnac(seed): N/A Sensitivity CMfinder(seed): N/A Carnac(seed): N/A Positive Predictive Value CMfinder(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs Carnac(seed) Matthews Correlation Coefficient RNAshapes: N/A Carnac(seed): N/A Sensitivity RNAshapes: N/A Carnac(seed): N/A Positive Predictive Value RNAshapes: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Carnac(seed) Matthews Correlation Coefficient Multilign(seed): N/A Carnac(seed): N/A Sensitivity Multilign(seed): N/A Carnac(seed): N/A Positive Predictive Value Multilign(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(seed) vs Multilign(20) Matthews Correlation Coefficient Carnac(seed): N/A Multilign(20): N/A Sensitivity Carnac(seed): N/A Multilign(20): N/A Positive Predictive Value Carnac(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Carnac(seed) Matthews Correlation Coefficient TurboFold(20): N/A Carnac(seed): N/A Sensitivity TurboFold(20): N/A Carnac(seed): N/A Positive Predictive Value TurboFold(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Carnac(seed) Matthews Correlation Coefficient Mastr(seed): N/A Carnac(seed): N/A Sensitivity Mastr(seed): N/A Carnac(seed): N/A Positive Predictive Value Mastr(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs Carnac(seed) Matthews Correlation Coefficient RNAsubopt: N/A Carnac(seed): N/A Sensitivity RNAsubopt: N/A Carnac(seed): N/A Positive Predictive Value RNAsubopt: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Carnac(seed) Matthews Correlation Coefficient HotKnots: N/A Carnac(seed): N/A Sensitivity HotKnots: N/A Carnac(seed): N/A Positive Predictive Value HotKnots: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Carnac(seed) Matthews Correlation Coefficient Pknots: N/A Carnac(seed): N/A Sensitivity Pknots: N/A Carnac(seed): N/A Positive Predictive Value Pknots: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Carnac(seed) Matthews Correlation Coefficient Cylofold: N/A Carnac(seed): N/A Sensitivity Cylofold: N/A Carnac(seed): N/A Positive Predictive Value Cylofold: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(seed) vs MCFold Matthews Correlation Coefficient Carnac(seed): N/A MCFold: N/A Sensitivity Carnac(seed): N/A MCFold: N/A Positive Predictive Value Carnac(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Carnac(seed) Matthews Correlation Coefficient Vsfold5: N/A Carnac(seed): N/A Sensitivity Vsfold5: N/A Carnac(seed): N/A Positive Predictive Value Vsfold5: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Carnac(seed) Matthews Correlation Coefficient Vsfold4: N/A Carnac(seed): N/A Sensitivity Vsfold4: N/A Carnac(seed): N/A Positive Predictive Value Vsfold4: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? RNASampler(20) vs Carnac(seed) Matthews Correlation Coefficient RNASampler(20): N/A Carnac(seed): N/A Sensitivity RNASampler(20): N/A Carnac(seed): N/A Positive Predictive Value RNASampler(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs CMfinder(20) Matthews Correlation Coefficient Carnac(seed): N/A CMfinder(20): N/A Sensitivity Carnac(seed): N/A CMfinder(20): N/A Positive Predictive Value Carnac(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Carnac(seed) Matthews Correlation Coefficient PPfold(seed): N/A Carnac(seed): N/A Sensitivity PPfold(seed): N/A Carnac(seed): N/A Positive Predictive Value PPfold(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Carnac(seed) Matthews Correlation Coefficient RDfolder: N/A Carnac(seed): N/A Sensitivity RDfolder: N/A Carnac(seed): N/A Positive Predictive Value RDfolder: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Carnac(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Carnac(seed): N/A Sensitivity TurboFold(seed): N/A Carnac(seed): N/A Positive Predictive Value TurboFold(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Carnac(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Carnac(seed): N/A Sensitivity RNASampler(seed): N/A Carnac(seed): N/A Positive Predictive Value RNASampler(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Carnac(seed) vs RNASLOpt Matthews Correlation Coefficient Carnac(seed): N/A RNASLOpt: N/A Sensitivity Carnac(seed): N/A RNASLOpt: N/A Positive Predictive Value Carnac(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Carnac(seed) Matthews Correlation Coefficient Murlet(20): N/A Carnac(seed): N/A Sensitivity Murlet(20): N/A Carnac(seed): N/A Positive Predictive Value Murlet(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs Carnac(seed) Matthews Correlation Coefficient Alterna: N/A Carnac(seed): N/A Sensitivity Alterna: N/A Carnac(seed): N/A Positive Predictive Value Alterna: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Carnac(seed) Matthews Correlation Coefficient PPfold(20): N/A Carnac(seed): N/A Sensitivity PPfold(20): N/A Carnac(seed): N/A Positive Predictive Value PPfold(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs Carnac(seed) Matthews Correlation Coefficient RNAwolf: N/A Carnac(seed): N/A Sensitivity RNAwolf: N/A Carnac(seed): N/A Positive Predictive Value RNAwolf: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Carnac(seed) Matthews Correlation Coefficient Mastr(20): N/A Carnac(seed): N/A Sensitivity Mastr(20): N/A Carnac(seed): N/A Positive Predictive Value Mastr(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
RNASampler(20)	0 RNASampler(20) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RNASampler(20): N/A PETfold_pre2.0(seed): N/A Sensitivity RNASampler(20): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RNASampler(20): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs ContextFold Matthews Correlation Coefficient RNASampler(20): N/A ContextFold: N/A Sensitivity RNASampler(20): N/A ContextFold: N/A Positive Predictive Value RNASampler(20): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CentroidAlifold(seed) Matthews Correlation Coefficient RNASampler(20): N/A CentroidAlifold(seed): N/A Sensitivity RNASampler(20): N/A CentroidAlifold(seed): N/A Positive Predictive Value RNASampler(20): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs PETfold_pre2.0(20) Matthews Correlation Coefficient RNASampler(20): N/A PETfold_pre2.0(20): N/A Sensitivity RNASampler(20): N/A PETfold_pre2.0(20): N/A Positive Predictive Value RNASampler(20): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CentroidAlifold(20) Matthews Correlation Coefficient RNASampler(20): N/A CentroidAlifold(20): N/A Sensitivity RNASampler(20): N/A CentroidAlifold(20): N/A Positive Predictive Value RNASampler(20): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAalifold(seed) Matthews Correlation Coefficient RNASampler(20): N/A RNAalifold(seed): N/A Sensitivity RNASampler(20): N/A RNAalifold(seed): N/A Positive Predictive Value RNASampler(20): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAalifold(20) Matthews Correlation Coefficient RNASampler(20): N/A RNAalifold(20): N/A Sensitivity RNASampler(20): N/A RNAalifold(20): N/A Positive Predictive Value RNASampler(20): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs MXScarna(seed) Matthews Correlation Coefficient RNASampler(20): N/A MXScarna(seed): N/A Sensitivity RNASampler(20): N/A MXScarna(seed): N/A Positive Predictive Value RNASampler(20): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs MXScarna(20) Matthews Correlation Coefficient RNASampler(20): N/A MXScarna(20): N/A Sensitivity RNASampler(20): N/A MXScarna(20): N/A Positive Predictive Value RNASampler(20): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Carnac(20) Matthews Correlation Coefficient RNASampler(20): N/A Carnac(20): N/A Sensitivity RNASampler(20): N/A Carnac(20): N/A Positive Predictive Value RNASampler(20): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs IPknot Matthews Correlation Coefficient RNASampler(20): N/A IPknot: N/A Sensitivity RNASampler(20): N/A IPknot: N/A Positive Predictive Value RNASampler(20): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CentroidFold Matthews Correlation Coefficient RNASampler(20): N/A CentroidFold: N/A Sensitivity RNASampler(20): N/A CentroidFold: N/A Positive Predictive Value RNASampler(20): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Contrafold Matthews Correlation Coefficient RNASampler(20): N/A Contrafold: N/A Sensitivity RNASampler(20): N/A Contrafold: N/A Positive Predictive Value RNASampler(20): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RSpredict(seed) Matthews Correlation Coefficient RNASampler(20): N/A RSpredict(seed): N/A Sensitivity RNASampler(20): N/A RSpredict(seed): N/A Positive Predictive Value RNASampler(20): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RSpredict(20) Matthews Correlation Coefficient RNASampler(20): N/A RSpredict(20): N/A Sensitivity RNASampler(20): N/A RSpredict(20): N/A Positive Predictive Value RNASampler(20): N/A RSpredict(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Sfold Matthews Correlation Coefficient RNASampler(20): N/A Sfold: N/A Sensitivity RNASampler(20): N/A Sfold: N/A Positive Predictive Value RNASampler(20): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs RNASampler(20) Matthews Correlation Coefficient MaxExpect: N/A RNASampler(20): N/A Sensitivity MaxExpect: N/A RNASampler(20): N/A Positive Predictive Value MaxExpect: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs ProbKnot Matthews Correlation Coefficient RNASampler(20): N/A ProbKnot: N/A Sensitivity RNASampler(20): N/A ProbKnot: N/A Positive Predictive Value RNASampler(20): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs UNAFold Matthews Correlation Coefficient RNASampler(20): N/A UNAFold: N/A Sensitivity RNASampler(20): N/A UNAFold: N/A Positive Predictive Value RNASampler(20): N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CRWrnafold Matthews Correlation Coefficient RNASampler(20): N/A CRWrnafold: N/A Sensitivity RNASampler(20): N/A CRWrnafold: N/A Positive Predictive Value RNASampler(20): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Afold Matthews Correlation Coefficient RNASampler(20): N/A Afold: N/A Sensitivity RNASampler(20): N/A Afold: N/A Positive Predictive Value RNASampler(20): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Fold Matthews Correlation Coefficient RNASampler(20): N/A Fold: N/A Sensitivity RNASampler(20): N/A Fold: N/A Positive Predictive Value RNASampler(20): N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAfold Matthews Correlation Coefficient RNASampler(20): N/A RNAfold: N/A Sensitivity RNASampler(20): N/A RNAfold: N/A Positive Predictive Value RNASampler(20): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs RNASampler(20) Matthews Correlation Coefficient PknotsRG: N/A RNASampler(20): N/A Sensitivity PknotsRG: N/A RNASampler(20): N/A Positive Predictive Value PknotsRG: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Murlet(seed) Matthews Correlation Coefficient RNASampler(20): N/A Murlet(seed): N/A Sensitivity RNASampler(20): N/A Murlet(seed): N/A Positive Predictive Value RNASampler(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs McQFold Matthews Correlation Coefficient RNASampler(20): N/A McQFold: N/A Sensitivity RNASampler(20): N/A McQFold: N/A Positive Predictive Value RNASampler(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNASampler(20) Matthews Correlation Coefficient NanoFolder: N/A RNASampler(20): N/A Sensitivity NanoFolder: N/A RNASampler(20): N/A Positive Predictive Value NanoFolder: N/A RNASampler(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNASampler(20): N/A CentroidHomfold‑LAST: N/A Sensitivity RNASampler(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNASampler(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CMfinder(seed) Matthews Correlation Coefficient RNASampler(20): N/A CMfinder(seed): N/A Sensitivity RNASampler(20): N/A CMfinder(seed): N/A Positive Predictive Value RNASampler(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAshapes Matthews Correlation Coefficient RNASampler(20): N/A RNAshapes: N/A Sensitivity RNASampler(20): N/A RNAshapes: N/A Positive Predictive Value RNASampler(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Multilign(seed) Matthews Correlation Coefficient RNASampler(20): N/A Multilign(seed): N/A Sensitivity RNASampler(20): N/A Multilign(seed): N/A Positive Predictive Value RNASampler(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Multilign(20) Matthews Correlation Coefficient RNASampler(20): N/A Multilign(20): N/A Sensitivity RNASampler(20): N/A Multilign(20): N/A Positive Predictive Value RNASampler(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs TurboFold(20) Matthews Correlation Coefficient RNASampler(20): N/A TurboFold(20): N/A Sensitivity RNASampler(20): N/A TurboFold(20): N/A Positive Predictive Value RNASampler(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Mastr(seed) Matthews Correlation Coefficient RNASampler(20): N/A Mastr(seed): N/A Sensitivity RNASampler(20): N/A Mastr(seed): N/A Positive Predictive Value RNASampler(20): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAsubopt Matthews Correlation Coefficient RNASampler(20): N/A RNAsubopt: N/A Sensitivity RNASampler(20): N/A RNAsubopt: N/A Positive Predictive Value RNASampler(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs HotKnots Matthews Correlation Coefficient RNASampler(20): N/A HotKnots: N/A Sensitivity RNASampler(20): N/A HotKnots: N/A Positive Predictive Value RNASampler(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Pknots Matthews Correlation Coefficient RNASampler(20): N/A Pknots: N/A Sensitivity RNASampler(20): N/A Pknots: N/A Positive Predictive Value RNASampler(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Cylofold Matthews Correlation Coefficient RNASampler(20): N/A Cylofold: N/A Sensitivity RNASampler(20): N/A Cylofold: N/A Positive Predictive Value RNASampler(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs MCFold Matthews Correlation Coefficient RNASampler(20): N/A MCFold: N/A Sensitivity RNASampler(20): N/A MCFold: N/A Positive Predictive Value RNASampler(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Vsfold5 Matthews Correlation Coefficient RNASampler(20): N/A Vsfold5: N/A Sensitivity RNASampler(20): N/A Vsfold5: N/A Positive Predictive Value RNASampler(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Vsfold4 Matthews Correlation Coefficient RNASampler(20): N/A Vsfold4: N/A Sensitivity RNASampler(20): N/A Vsfold4: N/A Positive Predictive Value RNASampler(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Carnac(seed) Matthews Correlation Coefficient RNASampler(20): N/A Carnac(seed): N/A Sensitivity RNASampler(20): N/A Carnac(seed): N/A Positive Predictive Value RNASampler(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? RNASampler(20) vs CMfinder(20) Matthews Correlation Coefficient RNASampler(20): N/A CMfinder(20): N/A Sensitivity RNASampler(20): N/A CMfinder(20): N/A Positive Predictive Value RNASampler(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs PPfold(seed) Matthews Correlation Coefficient RNASampler(20): N/A PPfold(seed): N/A Sensitivity RNASampler(20): N/A PPfold(seed): N/A Positive Predictive Value RNASampler(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RDfolder Matthews Correlation Coefficient RNASampler(20): N/A RDfolder: N/A Sensitivity RNASampler(20): N/A RDfolder: N/A Positive Predictive Value RNASampler(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs TurboFold(seed) Matthews Correlation Coefficient RNASampler(20): N/A TurboFold(seed): N/A Sensitivity RNASampler(20): N/A TurboFold(seed): N/A Positive Predictive Value RNASampler(20): N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RNASampler(seed) Matthews Correlation Coefficient RNASampler(20): N/A RNASampler(seed): N/A Sensitivity RNASampler(20): N/A RNASampler(seed): N/A Positive Predictive Value RNASampler(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RNASLOpt Matthews Correlation Coefficient RNASampler(20): N/A RNASLOpt: N/A Sensitivity RNASampler(20): N/A RNASLOpt: N/A Positive Predictive Value RNASampler(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Murlet(20) Matthews Correlation Coefficient RNASampler(20): N/A Murlet(20): N/A Sensitivity RNASampler(20): N/A Murlet(20): N/A Positive Predictive Value RNASampler(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Alterna Matthews Correlation Coefficient RNASampler(20): N/A Alterna: N/A Sensitivity RNASampler(20): N/A Alterna: N/A Positive Predictive Value RNASampler(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs PPfold(20) Matthews Correlation Coefficient RNASampler(20): N/A PPfold(20): N/A Sensitivity RNASampler(20): N/A PPfold(20): N/A Positive Predictive Value RNASampler(20): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs RNAwolf Matthews Correlation Coefficient RNASampler(20): N/A RNAwolf: N/A Sensitivity RNASampler(20): N/A RNAwolf: N/A Positive Predictive Value RNASampler(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(20) vs Mastr(20) Matthews Correlation Coefficient RNASampler(20): N/A Mastr(20): N/A Sensitivity RNASampler(20): N/A Mastr(20): N/A Positive Predictive Value RNASampler(20): N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
CMfinder(20)	0 PETfold_pre2.0(seed) vs CMfinder(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A CMfinder(20): N/A Sensitivity PETfold_pre2.0(seed): N/A CMfinder(20): N/A Positive Predictive Value PETfold_pre2.0(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs CMfinder(20) Matthews Correlation Coefficient ContextFold: N/A CMfinder(20): N/A Sensitivity ContextFold: N/A CMfinder(20): N/A Positive Predictive Value ContextFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs CMfinder(20) Matthews Correlation Coefficient CentroidAlifold(seed): N/A CMfinder(20): N/A Sensitivity CentroidAlifold(seed): N/A CMfinder(20): N/A Positive Predictive Value CentroidAlifold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs CMfinder(20) Matthews Correlation Coefficient PETfold_pre2.0(20): N/A CMfinder(20): N/A Sensitivity PETfold_pre2.0(20): N/A CMfinder(20): N/A Positive Predictive Value PETfold_pre2.0(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs CMfinder(20) Matthews Correlation Coefficient CentroidAlifold(20): N/A CMfinder(20): N/A Sensitivity CentroidAlifold(20): N/A CMfinder(20): N/A Positive Predictive Value CentroidAlifold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs CMfinder(20) Matthews Correlation Coefficient RNAalifold(seed): N/A CMfinder(20): N/A Sensitivity RNAalifold(seed): N/A CMfinder(20): N/A Positive Predictive Value RNAalifold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs CMfinder(20) Matthews Correlation Coefficient RNAalifold(20): N/A CMfinder(20): N/A Sensitivity RNAalifold(20): N/A CMfinder(20): N/A Positive Predictive Value RNAalifold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(seed) vs CMfinder(20) Matthews Correlation Coefficient MXScarna(seed): N/A CMfinder(20): N/A Sensitivity MXScarna(seed): N/A CMfinder(20): N/A Positive Predictive Value MXScarna(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(20) vs CMfinder(20) Matthews Correlation Coefficient MXScarna(20): N/A CMfinder(20): N/A Sensitivity MXScarna(20): N/A CMfinder(20): N/A Positive Predictive Value MXScarna(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs CMfinder(20) Matthews Correlation Coefficient Carnac(20): N/A CMfinder(20): N/A Sensitivity Carnac(20): N/A CMfinder(20): N/A Positive Predictive Value Carnac(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 IPknot vs CMfinder(20) Matthews Correlation Coefficient IPknot: N/A CMfinder(20): N/A Sensitivity IPknot: N/A CMfinder(20): N/A Positive Predictive Value IPknot: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidFold vs CMfinder(20) Matthews Correlation Coefficient CentroidFold: N/A CMfinder(20): N/A Sensitivity CentroidFold: N/A CMfinder(20): N/A Positive Predictive Value CentroidFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs CMfinder(20) Matthews Correlation Coefficient Contrafold: N/A CMfinder(20): N/A Sensitivity Contrafold: N/A CMfinder(20): N/A Positive Predictive Value Contrafold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs CMfinder(20) Matthews Correlation Coefficient RSpredict(seed): N/A CMfinder(20): N/A Sensitivity RSpredict(seed): N/A CMfinder(20): N/A Positive Predictive Value RSpredict(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs CMfinder(20) Matthews Correlation Coefficient RSpredict(20): N/A CMfinder(20): N/A Sensitivity RSpredict(20): N/A CMfinder(20): N/A Positive Predictive Value RSpredict(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Sfold vs CMfinder(20) Matthews Correlation Coefficient Sfold: N/A CMfinder(20): N/A Sensitivity Sfold: N/A CMfinder(20): N/A Positive Predictive Value Sfold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs CMfinder(20) Matthews Correlation Coefficient MaxExpect: N/A CMfinder(20): N/A Sensitivity MaxExpect: N/A CMfinder(20): N/A Positive Predictive Value MaxExpect: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs CMfinder(20) Matthews Correlation Coefficient ProbKnot: N/A CMfinder(20): N/A Sensitivity ProbKnot: N/A CMfinder(20): N/A Positive Predictive Value ProbKnot: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs CMfinder(20) Matthews Correlation Coefficient UNAFold: N/A CMfinder(20): N/A Sensitivity UNAFold: N/A CMfinder(20): N/A Positive Predictive Value UNAFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CRWrnafold vs CMfinder(20) Matthews Correlation Coefficient CRWrnafold: N/A CMfinder(20): N/A Sensitivity CRWrnafold: N/A CMfinder(20): N/A Positive Predictive Value CRWrnafold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Afold vs CMfinder(20) Matthews Correlation Coefficient Afold: N/A CMfinder(20): N/A Sensitivity Afold: N/A CMfinder(20): N/A Positive Predictive Value Afold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs CMfinder(20) Matthews Correlation Coefficient Fold: N/A CMfinder(20): N/A Sensitivity Fold: N/A CMfinder(20): N/A Positive Predictive Value Fold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAfold vs CMfinder(20) Matthews Correlation Coefficient RNAfold: N/A CMfinder(20): N/A Sensitivity RNAfold: N/A CMfinder(20): N/A Positive Predictive Value RNAfold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs CMfinder(20) Matthews Correlation Coefficient PknotsRG: N/A CMfinder(20): N/A Sensitivity PknotsRG: N/A CMfinder(20): N/A Positive Predictive Value PknotsRG: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(seed) vs CMfinder(20) Matthews Correlation Coefficient Murlet(seed): N/A CMfinder(20): N/A Sensitivity Murlet(seed): N/A CMfinder(20): N/A Positive Predictive Value Murlet(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs CMfinder(20) Matthews Correlation Coefficient McQFold: N/A CMfinder(20): N/A Sensitivity McQFold: N/A CMfinder(20): N/A Positive Predictive Value McQFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs CMfinder(20) Matthews Correlation Coefficient NanoFolder: N/A CMfinder(20): N/A Sensitivity NanoFolder: N/A CMfinder(20): N/A Positive Predictive Value NanoFolder: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs CMfinder(20) Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A CMfinder(20): N/A Sensitivity CentroidHomfold‑LAST: N/A CMfinder(20): N/A Positive Predictive Value CentroidHomfold‑LAST: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs CMfinder(20) Matthews Correlation Coefficient CMfinder(seed): N/A CMfinder(20): N/A Sensitivity CMfinder(seed): N/A CMfinder(20): N/A Positive Predictive Value CMfinder(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs CMfinder(20) Matthews Correlation Coefficient RNAshapes: N/A CMfinder(20): N/A Sensitivity RNAshapes: N/A CMfinder(20): N/A Positive Predictive Value RNAshapes: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs CMfinder(20) Matthews Correlation Coefficient Multilign(seed): N/A CMfinder(20): N/A Sensitivity Multilign(seed): N/A CMfinder(20): N/A Positive Predictive Value Multilign(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(20) vs CMfinder(20) Matthews Correlation Coefficient Multilign(20): N/A CMfinder(20): N/A Sensitivity Multilign(20): N/A CMfinder(20): N/A Positive Predictive Value Multilign(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs CMfinder(20) Matthews Correlation Coefficient TurboFold(20): N/A CMfinder(20): N/A Sensitivity TurboFold(20): N/A CMfinder(20): N/A Positive Predictive Value TurboFold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs CMfinder(20) Matthews Correlation Coefficient Mastr(seed): N/A CMfinder(20): N/A Sensitivity Mastr(seed): N/A CMfinder(20): N/A Positive Predictive Value Mastr(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs CMfinder(20) Matthews Correlation Coefficient RNAsubopt: N/A CMfinder(20): N/A Sensitivity RNAsubopt: N/A CMfinder(20): N/A Positive Predictive Value RNAsubopt: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs CMfinder(20) Matthews Correlation Coefficient HotKnots: N/A CMfinder(20): N/A Sensitivity HotKnots: N/A CMfinder(20): N/A Positive Predictive Value HotKnots: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs CMfinder(20) Matthews Correlation Coefficient Pknots: N/A CMfinder(20): N/A Sensitivity Pknots: N/A CMfinder(20): N/A Positive Predictive Value Pknots: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs CMfinder(20) Matthews Correlation Coefficient Cylofold: N/A CMfinder(20): N/A Sensitivity Cylofold: N/A CMfinder(20): N/A Positive Predictive Value Cylofold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MCFold vs CMfinder(20) Matthews Correlation Coefficient MCFold: N/A CMfinder(20): N/A Sensitivity MCFold: N/A CMfinder(20): N/A Positive Predictive Value MCFold: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs CMfinder(20) Matthews Correlation Coefficient Vsfold5: N/A CMfinder(20): N/A Sensitivity Vsfold5: N/A CMfinder(20): N/A Positive Predictive Value Vsfold5: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs CMfinder(20) Matthews Correlation Coefficient Vsfold4: N/A CMfinder(20): N/A Sensitivity Vsfold4: N/A CMfinder(20): N/A Positive Predictive Value Vsfold4: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(seed) vs CMfinder(20) Matthews Correlation Coefficient Carnac(seed): N/A CMfinder(20): N/A Sensitivity Carnac(seed): N/A CMfinder(20): N/A Positive Predictive Value Carnac(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs CMfinder(20) Matthews Correlation Coefficient RNASampler(20): N/A CMfinder(20): N/A Sensitivity RNASampler(20): N/A CMfinder(20): N/A Positive Predictive Value RNASampler(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? PPfold(seed) vs CMfinder(20) Matthews Correlation Coefficient PPfold(seed): N/A CMfinder(20): N/A Sensitivity PPfold(seed): N/A CMfinder(20): N/A Positive Predictive Value PPfold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs CMfinder(20) Matthews Correlation Coefficient RDfolder: N/A CMfinder(20): N/A Sensitivity RDfolder: N/A CMfinder(20): N/A Positive Predictive Value RDfolder: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs CMfinder(20) Matthews Correlation Coefficient TurboFold(seed): N/A CMfinder(20): N/A Sensitivity TurboFold(seed): N/A CMfinder(20): N/A Positive Predictive Value TurboFold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs CMfinder(20) Matthews Correlation Coefficient RNASampler(seed): N/A CMfinder(20): N/A Sensitivity RNASampler(seed): N/A CMfinder(20): N/A Positive Predictive Value RNASampler(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASLOpt vs CMfinder(20) Matthews Correlation Coefficient RNASLOpt: N/A CMfinder(20): N/A Sensitivity RNASLOpt: N/A CMfinder(20): N/A Positive Predictive Value RNASLOpt: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs CMfinder(20) Matthews Correlation Coefficient Murlet(20): N/A CMfinder(20): N/A Sensitivity Murlet(20): N/A CMfinder(20): N/A Positive Predictive Value Murlet(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs CMfinder(20) Matthews Correlation Coefficient Alterna: N/A CMfinder(20): N/A Sensitivity Alterna: N/A CMfinder(20): N/A Positive Predictive Value Alterna: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs CMfinder(20) Matthews Correlation Coefficient PPfold(20): N/A CMfinder(20): N/A Sensitivity PPfold(20): N/A CMfinder(20): N/A Positive Predictive Value PPfold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs CMfinder(20) Matthews Correlation Coefficient RNAwolf: N/A CMfinder(20): N/A Sensitivity RNAwolf: N/A CMfinder(20): N/A Positive Predictive Value RNAwolf: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs CMfinder(20) Matthews Correlation Coefficient Mastr(20): N/A CMfinder(20): N/A Sensitivity Mastr(20): N/A CMfinder(20): N/A Positive Predictive Value Mastr(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
PPfold(seed)	0 PPfold(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient PPfold(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity PPfold(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value PPfold(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs ContextFold Matthews Correlation Coefficient PPfold(seed): N/A ContextFold: N/A Sensitivity PPfold(seed): N/A ContextFold: N/A Positive Predictive Value PPfold(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs PPfold(seed) Matthews Correlation Coefficient CentroidAlifold(seed): N/A PPfold(seed): N/A Sensitivity CentroidAlifold(seed): N/A PPfold(seed): N/A Positive Predictive Value CentroidAlifold(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient PPfold(seed): N/A PETfold_pre2.0(20): N/A Sensitivity PPfold(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value PPfold(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient PPfold(seed): N/A CentroidAlifold(20): N/A Sensitivity PPfold(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value PPfold(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient PPfold(seed): N/A RNAalifold(seed): N/A Sensitivity PPfold(seed): N/A RNAalifold(seed): N/A Positive Predictive Value PPfold(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs PPfold(seed) Matthews Correlation Coefficient RNAalifold(20): N/A PPfold(seed): N/A Sensitivity RNAalifold(20): N/A PPfold(seed): N/A Positive Predictive Value RNAalifold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs MXScarna(seed) Matthews Correlation Coefficient PPfold(seed): N/A MXScarna(seed): N/A Sensitivity PPfold(seed): N/A MXScarna(seed): N/A Positive Predictive Value PPfold(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs MXScarna(20) Matthews Correlation Coefficient PPfold(seed): N/A MXScarna(20): N/A Sensitivity PPfold(seed): N/A MXScarna(20): N/A Positive Predictive Value PPfold(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Carnac(20) Matthews Correlation Coefficient PPfold(seed): N/A Carnac(20): N/A Sensitivity PPfold(seed): N/A Carnac(20): N/A Positive Predictive Value PPfold(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs IPknot Matthews Correlation Coefficient PPfold(seed): N/A IPknot: N/A Sensitivity PPfold(seed): N/A IPknot: N/A Positive Predictive Value PPfold(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CentroidFold Matthews Correlation Coefficient PPfold(seed): N/A CentroidFold: N/A Sensitivity PPfold(seed): N/A CentroidFold: N/A Positive Predictive Value PPfold(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Contrafold Matthews Correlation Coefficient PPfold(seed): N/A Contrafold: N/A Sensitivity PPfold(seed): N/A Contrafold: N/A Positive Predictive Value PPfold(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs PPfold(seed) Matthews Correlation Coefficient RSpredict(seed): N/A PPfold(seed): N/A Sensitivity RSpredict(seed): N/A PPfold(seed): N/A Positive Predictive Value RSpredict(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs PPfold(seed) Matthews Correlation Coefficient RSpredict(20): N/A PPfold(seed): N/A Sensitivity RSpredict(20): N/A PPfold(seed): N/A Positive Predictive Value RSpredict(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Sfold Matthews Correlation Coefficient PPfold(seed): N/A Sfold: N/A Sensitivity PPfold(seed): N/A Sfold: N/A Positive Predictive Value PPfold(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs PPfold(seed) Matthews Correlation Coefficient MaxExpect: N/A PPfold(seed): N/A Sensitivity MaxExpect: N/A PPfold(seed): N/A Positive Predictive Value MaxExpect: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs PPfold(seed) Matthews Correlation Coefficient ProbKnot: N/A PPfold(seed): N/A Sensitivity ProbKnot: N/A PPfold(seed): N/A Positive Predictive Value ProbKnot: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs PPfold(seed) Matthews Correlation Coefficient UNAFold: N/A PPfold(seed): N/A Sensitivity UNAFold: N/A PPfold(seed): N/A Positive Predictive Value UNAFold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CRWrnafold Matthews Correlation Coefficient PPfold(seed): N/A CRWrnafold: N/A Sensitivity PPfold(seed): N/A CRWrnafold: N/A Positive Predictive Value PPfold(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Afold Matthews Correlation Coefficient PPfold(seed): N/A Afold: N/A Sensitivity PPfold(seed): N/A Afold: N/A Positive Predictive Value PPfold(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs PPfold(seed) Matthews Correlation Coefficient Fold: N/A PPfold(seed): N/A Sensitivity Fold: N/A PPfold(seed): N/A Positive Predictive Value Fold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNAfold Matthews Correlation Coefficient PPfold(seed): N/A RNAfold: N/A Sensitivity PPfold(seed): N/A RNAfold: N/A Positive Predictive Value PPfold(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs PPfold(seed) Matthews Correlation Coefficient PknotsRG: N/A PPfold(seed): N/A Sensitivity PknotsRG: N/A PPfold(seed): N/A Positive Predictive Value PknotsRG: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Murlet(seed) Matthews Correlation Coefficient PPfold(seed): N/A Murlet(seed): N/A Sensitivity PPfold(seed): N/A Murlet(seed): N/A Positive Predictive Value PPfold(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs McQFold Matthews Correlation Coefficient PPfold(seed): N/A McQFold: N/A Sensitivity PPfold(seed): N/A McQFold: N/A Positive Predictive Value PPfold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs PPfold(seed) Matthews Correlation Coefficient NanoFolder: N/A PPfold(seed): N/A Sensitivity NanoFolder: N/A PPfold(seed): N/A Positive Predictive Value NanoFolder: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient PPfold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity PPfold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PPfold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CMfinder(seed) Matthews Correlation Coefficient PPfold(seed): N/A CMfinder(seed): N/A Sensitivity PPfold(seed): N/A CMfinder(seed): N/A Positive Predictive Value PPfold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNAshapes Matthews Correlation Coefficient PPfold(seed): N/A RNAshapes: N/A Sensitivity PPfold(seed): N/A RNAshapes: N/A Positive Predictive Value PPfold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Multilign(seed) Matthews Correlation Coefficient PPfold(seed): N/A Multilign(seed): N/A Sensitivity PPfold(seed): N/A Multilign(seed): N/A Positive Predictive Value PPfold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Multilign(20) Matthews Correlation Coefficient PPfold(seed): N/A Multilign(20): N/A Sensitivity PPfold(seed): N/A Multilign(20): N/A Positive Predictive Value PPfold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs PPfold(seed) Matthews Correlation Coefficient TurboFold(20): N/A PPfold(seed): N/A Sensitivity TurboFold(20): N/A PPfold(seed): N/A Positive Predictive Value TurboFold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs PPfold(seed) Matthews Correlation Coefficient Mastr(seed): N/A PPfold(seed): N/A Sensitivity Mastr(seed): N/A PPfold(seed): N/A Positive Predictive Value Mastr(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNAsubopt Matthews Correlation Coefficient PPfold(seed): N/A RNAsubopt: N/A Sensitivity PPfold(seed): N/A RNAsubopt: N/A Positive Predictive Value PPfold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs PPfold(seed) Matthews Correlation Coefficient HotKnots: N/A PPfold(seed): N/A Sensitivity HotKnots: N/A PPfold(seed): N/A Positive Predictive Value HotKnots: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Pknots Matthews Correlation Coefficient PPfold(seed): N/A Pknots: N/A Sensitivity PPfold(seed): N/A Pknots: N/A Positive Predictive Value PPfold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs PPfold(seed) Matthews Correlation Coefficient Cylofold: N/A PPfold(seed): N/A Sensitivity Cylofold: N/A PPfold(seed): N/A Positive Predictive Value Cylofold: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs MCFold Matthews Correlation Coefficient PPfold(seed): N/A MCFold: N/A Sensitivity PPfold(seed): N/A MCFold: N/A Positive Predictive Value PPfold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs PPfold(seed) Matthews Correlation Coefficient Vsfold5: N/A PPfold(seed): N/A Sensitivity Vsfold5: N/A PPfold(seed): N/A Positive Predictive Value Vsfold5: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Vsfold4 Matthews Correlation Coefficient PPfold(seed): N/A Vsfold4: N/A Sensitivity PPfold(seed): N/A Vsfold4: N/A Positive Predictive Value PPfold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Carnac(seed) Matthews Correlation Coefficient PPfold(seed): N/A Carnac(seed): N/A Sensitivity PPfold(seed): N/A Carnac(seed): N/A Positive Predictive Value PPfold(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs PPfold(seed) Matthews Correlation Coefficient RNASampler(20): N/A PPfold(seed): N/A Sensitivity RNASampler(20): N/A PPfold(seed): N/A Positive Predictive Value RNASampler(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs CMfinder(20) Matthews Correlation Coefficient PPfold(seed): N/A CMfinder(20): N/A Sensitivity PPfold(seed): N/A CMfinder(20): N/A Positive Predictive Value PPfold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? RDfolder vs PPfold(seed) Matthews Correlation Coefficient RDfolder: N/A PPfold(seed): N/A Sensitivity RDfolder: N/A PPfold(seed): N/A Positive Predictive Value RDfolder: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs PPfold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A PPfold(seed): N/A Sensitivity TurboFold(seed): N/A PPfold(seed): N/A Positive Predictive Value TurboFold(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs PPfold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A PPfold(seed): N/A Sensitivity RNASampler(seed): N/A PPfold(seed): N/A Positive Predictive Value RNASampler(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNASLOpt Matthews Correlation Coefficient PPfold(seed): N/A RNASLOpt: N/A Sensitivity PPfold(seed): N/A RNASLOpt: N/A Positive Predictive Value PPfold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Murlet(20) Matthews Correlation Coefficient PPfold(seed): N/A Murlet(20): N/A Sensitivity PPfold(seed): N/A Murlet(20): N/A Positive Predictive Value PPfold(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs Alterna Matthews Correlation Coefficient PPfold(seed): N/A Alterna: N/A Sensitivity PPfold(seed): N/A Alterna: N/A Positive Predictive Value PPfold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs PPfold(seed) Matthews Correlation Coefficient PPfold(20): N/A PPfold(seed): N/A Sensitivity PPfold(20): N/A PPfold(seed): N/A Positive Predictive Value PPfold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(seed) vs RNAwolf Matthews Correlation Coefficient PPfold(seed): N/A RNAwolf: N/A Sensitivity PPfold(seed): N/A RNAwolf: N/A Positive Predictive Value PPfold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs PPfold(seed) Matthews Correlation Coefficient Mastr(20): N/A PPfold(seed): N/A Sensitivity Mastr(20): N/A PPfold(seed): N/A Positive Predictive Value Mastr(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
RDfolder	0 RDfolder vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RDfolder: N/A PETfold_pre2.0(seed): N/A Sensitivity RDfolder: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RDfolder: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs ContextFold Matthews Correlation Coefficient RDfolder: N/A ContextFold: N/A Sensitivity RDfolder: N/A ContextFold: N/A Positive Predictive Value RDfolder: N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs RDfolder Matthews Correlation Coefficient CentroidAlifold(seed): N/A RDfolder: N/A Sensitivity CentroidAlifold(seed): N/A RDfolder: N/A Positive Predictive Value CentroidAlifold(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs PETfold_pre2.0(20) Matthews Correlation Coefficient RDfolder: N/A PETfold_pre2.0(20): N/A Sensitivity RDfolder: N/A PETfold_pre2.0(20): N/A Positive Predictive Value RDfolder: N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CentroidAlifold(20) Matthews Correlation Coefficient RDfolder: N/A CentroidAlifold(20): N/A Sensitivity RDfolder: N/A CentroidAlifold(20): N/A Positive Predictive Value RDfolder: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAalifold(seed) Matthews Correlation Coefficient RDfolder: N/A RNAalifold(seed): N/A Sensitivity RDfolder: N/A RNAalifold(seed): N/A Positive Predictive Value RDfolder: N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAalifold(20) Matthews Correlation Coefficient RDfolder: N/A RNAalifold(20): N/A Sensitivity RDfolder: N/A RNAalifold(20): N/A Positive Predictive Value RDfolder: N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs MXScarna(seed) Matthews Correlation Coefficient RDfolder: N/A MXScarna(seed): N/A Sensitivity RDfolder: N/A MXScarna(seed): N/A Positive Predictive Value RDfolder: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs MXScarna(20) Matthews Correlation Coefficient RDfolder: N/A MXScarna(20): N/A Sensitivity RDfolder: N/A MXScarna(20): N/A Positive Predictive Value RDfolder: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Carnac(20) Matthews Correlation Coefficient RDfolder: N/A Carnac(20): N/A Sensitivity RDfolder: N/A Carnac(20): N/A Positive Predictive Value RDfolder: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs IPknot Matthews Correlation Coefficient RDfolder: N/A IPknot: N/A Sensitivity RDfolder: N/A IPknot: N/A Positive Predictive Value RDfolder: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CentroidFold Matthews Correlation Coefficient RDfolder: N/A CentroidFold: N/A Sensitivity RDfolder: N/A CentroidFold: N/A Positive Predictive Value RDfolder: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Contrafold Matthews Correlation Coefficient RDfolder: N/A Contrafold: N/A Sensitivity RDfolder: N/A Contrafold: N/A Positive Predictive Value RDfolder: N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs RDfolder Matthews Correlation Coefficient RSpredict(seed): N/A RDfolder: N/A Sensitivity RSpredict(seed): N/A RDfolder: N/A Positive Predictive Value RSpredict(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RDfolder Matthews Correlation Coefficient RSpredict(20): N/A RDfolder: N/A Sensitivity RSpredict(20): N/A RDfolder: N/A Positive Predictive Value RSpredict(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Sfold Matthews Correlation Coefficient RDfolder: N/A Sfold: N/A Sensitivity RDfolder: N/A Sfold: N/A Positive Predictive Value RDfolder: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs RDfolder Matthews Correlation Coefficient MaxExpect: N/A RDfolder: N/A Sensitivity MaxExpect: N/A RDfolder: N/A Positive Predictive Value MaxExpect: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs ProbKnot Matthews Correlation Coefficient RDfolder: N/A ProbKnot: N/A Sensitivity RDfolder: N/A ProbKnot: N/A Positive Predictive Value RDfolder: N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs RDfolder Matthews Correlation Coefficient UNAFold: N/A RDfolder: N/A Sensitivity UNAFold: N/A RDfolder: N/A Positive Predictive Value UNAFold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CRWrnafold Matthews Correlation Coefficient RDfolder: N/A CRWrnafold: N/A Sensitivity RDfolder: N/A CRWrnafold: N/A Positive Predictive Value RDfolder: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Afold Matthews Correlation Coefficient RDfolder: N/A Afold: N/A Sensitivity RDfolder: N/A Afold: N/A Positive Predictive Value RDfolder: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs RDfolder Matthews Correlation Coefficient Fold: N/A RDfolder: N/A Sensitivity Fold: N/A RDfolder: N/A Positive Predictive Value Fold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAfold Matthews Correlation Coefficient RDfolder: N/A RNAfold: N/A Sensitivity RDfolder: N/A RNAfold: N/A Positive Predictive Value RDfolder: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs RDfolder Matthews Correlation Coefficient PknotsRG: N/A RDfolder: N/A Sensitivity PknotsRG: N/A RDfolder: N/A Positive Predictive Value PknotsRG: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Murlet(seed) Matthews Correlation Coefficient RDfolder: N/A Murlet(seed): N/A Sensitivity RDfolder: N/A Murlet(seed): N/A Positive Predictive Value RDfolder: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs McQFold Matthews Correlation Coefficient RDfolder: N/A McQFold: N/A Sensitivity RDfolder: N/A McQFold: N/A Positive Predictive Value RDfolder: N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RDfolder Matthews Correlation Coefficient NanoFolder: N/A RDfolder: N/A Sensitivity NanoFolder: N/A RDfolder: N/A Positive Predictive Value NanoFolder: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CentroidHomfold‑LAST Matthews Correlation Coefficient RDfolder: N/A CentroidHomfold‑LAST: N/A Sensitivity RDfolder: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RDfolder: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CMfinder(seed) Matthews Correlation Coefficient RDfolder: N/A CMfinder(seed): N/A Sensitivity RDfolder: N/A CMfinder(seed): N/A Positive Predictive Value RDfolder: N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAshapes Matthews Correlation Coefficient RDfolder: N/A RNAshapes: N/A Sensitivity RDfolder: N/A RNAshapes: N/A Positive Predictive Value RDfolder: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Multilign(seed) Matthews Correlation Coefficient RDfolder: N/A Multilign(seed): N/A Sensitivity RDfolder: N/A Multilign(seed): N/A Positive Predictive Value RDfolder: N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Multilign(20) Matthews Correlation Coefficient RDfolder: N/A Multilign(20): N/A Sensitivity RDfolder: N/A Multilign(20): N/A Positive Predictive Value RDfolder: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs TurboFold(20) Matthews Correlation Coefficient RDfolder: N/A TurboFold(20): N/A Sensitivity RDfolder: N/A TurboFold(20): N/A Positive Predictive Value RDfolder: N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs RDfolder Matthews Correlation Coefficient Mastr(seed): N/A RDfolder: N/A Sensitivity Mastr(seed): N/A RDfolder: N/A Positive Predictive Value Mastr(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAsubopt Matthews Correlation Coefficient RDfolder: N/A RNAsubopt: N/A Sensitivity RDfolder: N/A RNAsubopt: N/A Positive Predictive Value RDfolder: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RDfolder Matthews Correlation Coefficient HotKnots: N/A RDfolder: N/A Sensitivity HotKnots: N/A RDfolder: N/A Positive Predictive Value HotKnots: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Pknots Matthews Correlation Coefficient RDfolder: N/A Pknots: N/A Sensitivity RDfolder: N/A Pknots: N/A Positive Predictive Value RDfolder: N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RDfolder Matthews Correlation Coefficient Cylofold: N/A RDfolder: N/A Sensitivity Cylofold: N/A RDfolder: N/A Positive Predictive Value Cylofold: N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs MCFold Matthews Correlation Coefficient RDfolder: N/A MCFold: N/A Sensitivity RDfolder: N/A MCFold: N/A Positive Predictive Value RDfolder: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Vsfold5 Matthews Correlation Coefficient RDfolder: N/A Vsfold5: N/A Sensitivity RDfolder: N/A Vsfold5: N/A Positive Predictive Value RDfolder: N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Vsfold4 Matthews Correlation Coefficient RDfolder: N/A Vsfold4: N/A Sensitivity RDfolder: N/A Vsfold4: N/A Positive Predictive Value RDfolder: N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Carnac(seed) Matthews Correlation Coefficient RDfolder: N/A Carnac(seed): N/A Sensitivity RDfolder: N/A Carnac(seed): N/A Positive Predictive Value RDfolder: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RDfolder Matthews Correlation Coefficient RNASampler(20): N/A RDfolder: N/A Sensitivity RNASampler(20): N/A RDfolder: N/A Positive Predictive Value RNASampler(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs CMfinder(20) Matthews Correlation Coefficient RDfolder: N/A CMfinder(20): N/A Sensitivity RDfolder: N/A CMfinder(20): N/A Positive Predictive Value RDfolder: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs PPfold(seed) Matthews Correlation Coefficient RDfolder: N/A PPfold(seed): N/A Sensitivity RDfolder: N/A PPfold(seed): N/A Positive Predictive Value RDfolder: N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? TurboFold(seed) vs RDfolder Matthews Correlation Coefficient TurboFold(seed): N/A RDfolder: N/A Sensitivity TurboFold(seed): N/A RDfolder: N/A Positive Predictive Value TurboFold(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RDfolder Matthews Correlation Coefficient RNASampler(seed): N/A RDfolder: N/A Sensitivity RNASampler(seed): N/A RDfolder: N/A Positive Predictive Value RNASampler(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNASLOpt Matthews Correlation Coefficient RDfolder: N/A RNASLOpt: N/A Sensitivity RDfolder: N/A RNASLOpt: N/A Positive Predictive Value RDfolder: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Murlet(20) Matthews Correlation Coefficient RDfolder: N/A Murlet(20): N/A Sensitivity RDfolder: N/A Murlet(20): N/A Positive Predictive Value RDfolder: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs Alterna Matthews Correlation Coefficient RDfolder: N/A Alterna: N/A Sensitivity RDfolder: N/A Alterna: N/A Positive Predictive Value RDfolder: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RDfolder Matthews Correlation Coefficient PPfold(20): N/A RDfolder: N/A Sensitivity PPfold(20): N/A RDfolder: N/A Positive Predictive Value PPfold(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RDfolder vs RNAwolf Matthews Correlation Coefficient RDfolder: N/A RNAwolf: N/A Sensitivity RDfolder: N/A RNAwolf: N/A Positive Predictive Value RDfolder: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs RDfolder Matthews Correlation Coefficient Mastr(20): N/A RDfolder: N/A Sensitivity Mastr(20): N/A RDfolder: N/A Positive Predictive Value Mastr(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
TurboFold(seed)	0 TurboFold(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value TurboFold(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs ContextFold Matthews Correlation Coefficient TurboFold(seed): N/A ContextFold: N/A Sensitivity TurboFold(seed): N/A ContextFold: N/A Positive Predictive Value TurboFold(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A CentroidAlifold(seed): N/A Sensitivity TurboFold(seed): N/A CentroidAlifold(seed): N/A Positive Predictive Value TurboFold(seed): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient TurboFold(seed): N/A PETfold_pre2.0(20): N/A Sensitivity TurboFold(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value TurboFold(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient TurboFold(seed): N/A CentroidAlifold(20): N/A Sensitivity TurboFold(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value TurboFold(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAalifold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RNAalifold(seed): N/A Sensitivity TurboFold(seed): N/A RNAalifold(seed): N/A Positive Predictive Value TurboFold(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAalifold(20) Matthews Correlation Coefficient TurboFold(seed): N/A RNAalifold(20): N/A Sensitivity TurboFold(seed): N/A RNAalifold(20): N/A Positive Predictive Value TurboFold(seed): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs MXScarna(seed) Matthews Correlation Coefficient TurboFold(seed): N/A MXScarna(seed): N/A Sensitivity TurboFold(seed): N/A MXScarna(seed): N/A Positive Predictive Value TurboFold(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs MXScarna(20) Matthews Correlation Coefficient TurboFold(seed): N/A MXScarna(20): N/A Sensitivity TurboFold(seed): N/A MXScarna(20): N/A Positive Predictive Value TurboFold(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Carnac(20) Matthews Correlation Coefficient TurboFold(seed): N/A Carnac(20): N/A Sensitivity TurboFold(seed): N/A Carnac(20): N/A Positive Predictive Value TurboFold(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs IPknot Matthews Correlation Coefficient TurboFold(seed): N/A IPknot: N/A Sensitivity TurboFold(seed): N/A IPknot: N/A Positive Predictive Value TurboFold(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CentroidFold Matthews Correlation Coefficient TurboFold(seed): N/A CentroidFold: N/A Sensitivity TurboFold(seed): N/A CentroidFold: N/A Positive Predictive Value TurboFold(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Contrafold Matthews Correlation Coefficient TurboFold(seed): N/A Contrafold: N/A Sensitivity TurboFold(seed): N/A Contrafold: N/A Positive Predictive Value TurboFold(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RSpredict(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RSpredict(seed): N/A Sensitivity TurboFold(seed): N/A RSpredict(seed): N/A Positive Predictive Value TurboFold(seed): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs TurboFold(seed) Matthews Correlation Coefficient RSpredict(20): N/A TurboFold(seed): N/A Sensitivity RSpredict(20): N/A TurboFold(seed): N/A Positive Predictive Value RSpredict(20): N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Sfold Matthews Correlation Coefficient TurboFold(seed): N/A Sfold: N/A Sensitivity TurboFold(seed): N/A Sfold: N/A Positive Predictive Value TurboFold(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs TurboFold(seed) Matthews Correlation Coefficient MaxExpect: N/A TurboFold(seed): N/A Sensitivity MaxExpect: N/A TurboFold(seed): N/A Positive Predictive Value MaxExpect: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs ProbKnot Matthews Correlation Coefficient TurboFold(seed): N/A ProbKnot: N/A Sensitivity TurboFold(seed): N/A ProbKnot: N/A Positive Predictive Value TurboFold(seed): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs UNAFold Matthews Correlation Coefficient TurboFold(seed): N/A UNAFold: N/A Sensitivity TurboFold(seed): N/A UNAFold: N/A Positive Predictive Value TurboFold(seed): N/A UNAFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CRWrnafold Matthews Correlation Coefficient TurboFold(seed): N/A CRWrnafold: N/A Sensitivity TurboFold(seed): N/A CRWrnafold: N/A Positive Predictive Value TurboFold(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Afold Matthews Correlation Coefficient TurboFold(seed): N/A Afold: N/A Sensitivity TurboFold(seed): N/A Afold: N/A Positive Predictive Value TurboFold(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Fold Matthews Correlation Coefficient TurboFold(seed): N/A Fold: N/A Sensitivity TurboFold(seed): N/A Fold: N/A Positive Predictive Value TurboFold(seed): N/A Fold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAfold Matthews Correlation Coefficient TurboFold(seed): N/A RNAfold: N/A Sensitivity TurboFold(seed): N/A RNAfold: N/A Positive Predictive Value TurboFold(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs TurboFold(seed) Matthews Correlation Coefficient PknotsRG: N/A TurboFold(seed): N/A Sensitivity PknotsRG: N/A TurboFold(seed): N/A Positive Predictive Value PknotsRG: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Murlet(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Murlet(seed): N/A Sensitivity TurboFold(seed): N/A Murlet(seed): N/A Positive Predictive Value TurboFold(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs McQFold Matthews Correlation Coefficient TurboFold(seed): N/A McQFold: N/A Sensitivity TurboFold(seed): N/A McQFold: N/A Positive Predictive Value TurboFold(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs TurboFold(seed) Matthews Correlation Coefficient NanoFolder: N/A TurboFold(seed): N/A Sensitivity NanoFolder: N/A TurboFold(seed): N/A Positive Predictive Value NanoFolder: N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value TurboFold(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CMfinder(seed) Matthews Correlation Coefficient TurboFold(seed): N/A CMfinder(seed): N/A Sensitivity TurboFold(seed): N/A CMfinder(seed): N/A Positive Predictive Value TurboFold(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAshapes Matthews Correlation Coefficient TurboFold(seed): N/A RNAshapes: N/A Sensitivity TurboFold(seed): N/A RNAshapes: N/A Positive Predictive Value TurboFold(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Multilign(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Multilign(seed): N/A Sensitivity TurboFold(seed): N/A Multilign(seed): N/A Positive Predictive Value TurboFold(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Multilign(20) Matthews Correlation Coefficient TurboFold(seed): N/A Multilign(20): N/A Sensitivity TurboFold(seed): N/A Multilign(20): N/A Positive Predictive Value TurboFold(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs TurboFold(20) Matthews Correlation Coefficient TurboFold(seed): N/A TurboFold(20): N/A Sensitivity TurboFold(seed): N/A TurboFold(20): N/A Positive Predictive Value TurboFold(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Mastr(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Mastr(seed): N/A Sensitivity TurboFold(seed): N/A Mastr(seed): N/A Positive Predictive Value TurboFold(seed): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAsubopt Matthews Correlation Coefficient TurboFold(seed): N/A RNAsubopt: N/A Sensitivity TurboFold(seed): N/A RNAsubopt: N/A Positive Predictive Value TurboFold(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs HotKnots Matthews Correlation Coefficient TurboFold(seed): N/A HotKnots: N/A Sensitivity TurboFold(seed): N/A HotKnots: N/A Positive Predictive Value TurboFold(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Pknots Matthews Correlation Coefficient TurboFold(seed): N/A Pknots: N/A Sensitivity TurboFold(seed): N/A Pknots: N/A Positive Predictive Value TurboFold(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Cylofold Matthews Correlation Coefficient TurboFold(seed): N/A Cylofold: N/A Sensitivity TurboFold(seed): N/A Cylofold: N/A Positive Predictive Value TurboFold(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs MCFold Matthews Correlation Coefficient TurboFold(seed): N/A MCFold: N/A Sensitivity TurboFold(seed): N/A MCFold: N/A Positive Predictive Value TurboFold(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Vsfold5 Matthews Correlation Coefficient TurboFold(seed): N/A Vsfold5: N/A Sensitivity TurboFold(seed): N/A Vsfold5: N/A Positive Predictive Value TurboFold(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Vsfold4 Matthews Correlation Coefficient TurboFold(seed): N/A Vsfold4: N/A Sensitivity TurboFold(seed): N/A Vsfold4: N/A Positive Predictive Value TurboFold(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Carnac(seed) Matthews Correlation Coefficient TurboFold(seed): N/A Carnac(seed): N/A Sensitivity TurboFold(seed): N/A Carnac(seed): N/A Positive Predictive Value TurboFold(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs TurboFold(seed) Matthews Correlation Coefficient RNASampler(20): N/A TurboFold(seed): N/A Sensitivity RNASampler(20): N/A TurboFold(seed): N/A Positive Predictive Value RNASampler(20): N/A TurboFold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs CMfinder(20) Matthews Correlation Coefficient TurboFold(seed): N/A CMfinder(20): N/A Sensitivity TurboFold(seed): N/A CMfinder(20): N/A Positive Predictive Value TurboFold(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs PPfold(seed) Matthews Correlation Coefficient TurboFold(seed): N/A PPfold(seed): N/A Sensitivity TurboFold(seed): N/A PPfold(seed): N/A Positive Predictive Value TurboFold(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RDfolder Matthews Correlation Coefficient TurboFold(seed): N/A RDfolder: N/A Sensitivity TurboFold(seed): N/A RDfolder: N/A Positive Predictive Value TurboFold(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? TurboFold(seed) vs RNASampler(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RNASampler(seed): N/A Sensitivity TurboFold(seed): N/A RNASampler(seed): N/A Positive Predictive Value TurboFold(seed): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNASLOpt Matthews Correlation Coefficient TurboFold(seed): N/A RNASLOpt: N/A Sensitivity TurboFold(seed): N/A RNASLOpt: N/A Positive Predictive Value TurboFold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Murlet(20) Matthews Correlation Coefficient TurboFold(seed): N/A Murlet(20): N/A Sensitivity TurboFold(seed): N/A Murlet(20): N/A Positive Predictive Value TurboFold(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Alterna Matthews Correlation Coefficient TurboFold(seed): N/A Alterna: N/A Sensitivity TurboFold(seed): N/A Alterna: N/A Positive Predictive Value TurboFold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs PPfold(20) Matthews Correlation Coefficient TurboFold(seed): N/A PPfold(20): N/A Sensitivity TurboFold(seed): N/A PPfold(20): N/A Positive Predictive Value TurboFold(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs RNAwolf Matthews Correlation Coefficient TurboFold(seed): N/A RNAwolf: N/A Sensitivity TurboFold(seed): N/A RNAwolf: N/A Positive Predictive Value TurboFold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? TurboFold(seed) vs Mastr(20) Matthews Correlation Coefficient TurboFold(seed): N/A Mastr(20): N/A Sensitivity TurboFold(seed): N/A Mastr(20): N/A Positive Predictive Value TurboFold(seed): N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
RNASampler(seed)	0 RNASampler(seed) vs PETfold_pre2.0(seed) Matthews Correlation Coefficient RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Sensitivity RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Positive Predictive Value RNASampler(seed): N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs ContextFold Matthews Correlation Coefficient RNASampler(seed): N/A ContextFold: N/A Sensitivity RNASampler(seed): N/A ContextFold: N/A Positive Predictive Value RNASampler(seed): N/A ContextFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CentroidAlifold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A CentroidAlifold(seed): N/A Sensitivity RNASampler(seed): N/A CentroidAlifold(seed): N/A Positive Predictive Value RNASampler(seed): N/A CentroidAlifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs PETfold_pre2.0(20) Matthews Correlation Coefficient RNASampler(seed): N/A PETfold_pre2.0(20): N/A Sensitivity RNASampler(seed): N/A PETfold_pre2.0(20): N/A Positive Predictive Value RNASampler(seed): N/A PETfold_pre2.0(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CentroidAlifold(20) Matthews Correlation Coefficient RNASampler(seed): N/A CentroidAlifold(20): N/A Sensitivity RNASampler(seed): N/A CentroidAlifold(20): N/A Positive Predictive Value RNASampler(seed): N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAalifold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A RNAalifold(seed): N/A Sensitivity RNASampler(seed): N/A RNAalifold(seed): N/A Positive Predictive Value RNASampler(seed): N/A RNAalifold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAalifold(20) Matthews Correlation Coefficient RNASampler(seed): N/A RNAalifold(20): N/A Sensitivity RNASampler(seed): N/A RNAalifold(20): N/A Positive Predictive Value RNASampler(seed): N/A RNAalifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs MXScarna(seed) Matthews Correlation Coefficient RNASampler(seed): N/A MXScarna(seed): N/A Sensitivity RNASampler(seed): N/A MXScarna(seed): N/A Positive Predictive Value RNASampler(seed): N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs MXScarna(20) Matthews Correlation Coefficient RNASampler(seed): N/A MXScarna(20): N/A Sensitivity RNASampler(seed): N/A MXScarna(20): N/A Positive Predictive Value RNASampler(seed): N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Carnac(20) Matthews Correlation Coefficient RNASampler(seed): N/A Carnac(20): N/A Sensitivity RNASampler(seed): N/A Carnac(20): N/A Positive Predictive Value RNASampler(seed): N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs IPknot Matthews Correlation Coefficient RNASampler(seed): N/A IPknot: N/A Sensitivity RNASampler(seed): N/A IPknot: N/A Positive Predictive Value RNASampler(seed): N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CentroidFold Matthews Correlation Coefficient RNASampler(seed): N/A CentroidFold: N/A Sensitivity RNASampler(seed): N/A CentroidFold: N/A Positive Predictive Value RNASampler(seed): N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Contrafold Matthews Correlation Coefficient RNASampler(seed): N/A Contrafold: N/A Sensitivity RNASampler(seed): N/A Contrafold: N/A Positive Predictive Value RNASampler(seed): N/A Contrafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RSpredict(seed) Matthews Correlation Coefficient RNASampler(seed): N/A RSpredict(seed): N/A Sensitivity RNASampler(seed): N/A RSpredict(seed): N/A Positive Predictive Value RNASampler(seed): N/A RSpredict(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RNASampler(seed) Matthews Correlation Coefficient RSpredict(20): N/A RNASampler(seed): N/A Sensitivity RSpredict(20): N/A RNASampler(seed): N/A Positive Predictive Value RSpredict(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Sfold Matthews Correlation Coefficient RNASampler(seed): N/A Sfold: N/A Sensitivity RNASampler(seed): N/A Sfold: N/A Positive Predictive Value RNASampler(seed): N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs RNASampler(seed) Matthews Correlation Coefficient MaxExpect: N/A RNASampler(seed): N/A Sensitivity MaxExpect: N/A RNASampler(seed): N/A Positive Predictive Value MaxExpect: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs ProbKnot Matthews Correlation Coefficient RNASampler(seed): N/A ProbKnot: N/A Sensitivity RNASampler(seed): N/A ProbKnot: N/A Positive Predictive Value RNASampler(seed): N/A ProbKnot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs RNASampler(seed) Matthews Correlation Coefficient UNAFold: N/A RNASampler(seed): N/A Sensitivity UNAFold: N/A RNASampler(seed): N/A Positive Predictive Value UNAFold: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CRWrnafold Matthews Correlation Coefficient RNASampler(seed): N/A CRWrnafold: N/A Sensitivity RNASampler(seed): N/A CRWrnafold: N/A Positive Predictive Value RNASampler(seed): N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Afold Matthews Correlation Coefficient RNASampler(seed): N/A Afold: N/A Sensitivity RNASampler(seed): N/A Afold: N/A Positive Predictive Value RNASampler(seed): N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs RNASampler(seed) Matthews Correlation Coefficient Fold: N/A RNASampler(seed): N/A Sensitivity Fold: N/A RNASampler(seed): N/A Positive Predictive Value Fold: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAfold Matthews Correlation Coefficient RNASampler(seed): N/A RNAfold: N/A Sensitivity RNASampler(seed): N/A RNAfold: N/A Positive Predictive Value RNASampler(seed): N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs RNASampler(seed) Matthews Correlation Coefficient PknotsRG: N/A RNASampler(seed): N/A Sensitivity PknotsRG: N/A RNASampler(seed): N/A Positive Predictive Value PknotsRG: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Murlet(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Murlet(seed): N/A Sensitivity RNASampler(seed): N/A Murlet(seed): N/A Positive Predictive Value RNASampler(seed): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs McQFold Matthews Correlation Coefficient RNASampler(seed): N/A McQFold: N/A Sensitivity RNASampler(seed): N/A McQFold: N/A Positive Predictive Value RNASampler(seed): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs RNASampler(seed) Matthews Correlation Coefficient NanoFolder: N/A RNASampler(seed): N/A Sensitivity NanoFolder: N/A RNASampler(seed): N/A Positive Predictive Value NanoFolder: N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Sensitivity RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNASampler(seed): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CMfinder(seed) Matthews Correlation Coefficient RNASampler(seed): N/A CMfinder(seed): N/A Sensitivity RNASampler(seed): N/A CMfinder(seed): N/A Positive Predictive Value RNASampler(seed): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAshapes Matthews Correlation Coefficient RNASampler(seed): N/A RNAshapes: N/A Sensitivity RNASampler(seed): N/A RNAshapes: N/A Positive Predictive Value RNASampler(seed): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Multilign(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Multilign(seed): N/A Sensitivity RNASampler(seed): N/A Multilign(seed): N/A Positive Predictive Value RNASampler(seed): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Multilign(20) Matthews Correlation Coefficient RNASampler(seed): N/A Multilign(20): N/A Sensitivity RNASampler(seed): N/A Multilign(20): N/A Positive Predictive Value RNASampler(seed): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs TurboFold(20) Matthews Correlation Coefficient RNASampler(seed): N/A TurboFold(20): N/A Sensitivity RNASampler(seed): N/A TurboFold(20): N/A Positive Predictive Value RNASampler(seed): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Mastr(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Mastr(seed): N/A Sensitivity RNASampler(seed): N/A Mastr(seed): N/A Positive Predictive Value RNASampler(seed): N/A Mastr(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAsubopt Matthews Correlation Coefficient RNASampler(seed): N/A RNAsubopt: N/A Sensitivity RNASampler(seed): N/A RNAsubopt: N/A Positive Predictive Value RNASampler(seed): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs HotKnots Matthews Correlation Coefficient RNASampler(seed): N/A HotKnots: N/A Sensitivity RNASampler(seed): N/A HotKnots: N/A Positive Predictive Value RNASampler(seed): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Pknots Matthews Correlation Coefficient RNASampler(seed): N/A Pknots: N/A Sensitivity RNASampler(seed): N/A Pknots: N/A Positive Predictive Value RNASampler(seed): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Cylofold Matthews Correlation Coefficient RNASampler(seed): N/A Cylofold: N/A Sensitivity RNASampler(seed): N/A Cylofold: N/A Positive Predictive Value RNASampler(seed): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs MCFold Matthews Correlation Coefficient RNASampler(seed): N/A MCFold: N/A Sensitivity RNASampler(seed): N/A MCFold: N/A Positive Predictive Value RNASampler(seed): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Vsfold5 Matthews Correlation Coefficient RNASampler(seed): N/A Vsfold5: N/A Sensitivity RNASampler(seed): N/A Vsfold5: N/A Positive Predictive Value RNASampler(seed): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Vsfold4 Matthews Correlation Coefficient RNASampler(seed): N/A Vsfold4: N/A Sensitivity RNASampler(seed): N/A Vsfold4: N/A Positive Predictive Value RNASampler(seed): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Carnac(seed) Matthews Correlation Coefficient RNASampler(seed): N/A Carnac(seed): N/A Sensitivity RNASampler(seed): N/A Carnac(seed): N/A Positive Predictive Value RNASampler(seed): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNASampler(seed) Matthews Correlation Coefficient RNASampler(20): N/A RNASampler(seed): N/A Sensitivity RNASampler(20): N/A RNASampler(seed): N/A Positive Predictive Value RNASampler(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs CMfinder(20) Matthews Correlation Coefficient RNASampler(seed): N/A CMfinder(20): N/A Sensitivity RNASampler(seed): N/A CMfinder(20): N/A Positive Predictive Value RNASampler(seed): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs PPfold(seed) Matthews Correlation Coefficient RNASampler(seed): N/A PPfold(seed): N/A Sensitivity RNASampler(seed): N/A PPfold(seed): N/A Positive Predictive Value RNASampler(seed): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RDfolder Matthews Correlation Coefficient RNASampler(seed): N/A RDfolder: N/A Sensitivity RNASampler(seed): N/A RDfolder: N/A Positive Predictive Value RNASampler(seed): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNASampler(seed) Matthews Correlation Coefficient TurboFold(seed): N/A RNASampler(seed): N/A Sensitivity TurboFold(seed): N/A RNASampler(seed): N/A Positive Predictive Value TurboFold(seed): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? RNASampler(seed) vs RNASLOpt Matthews Correlation Coefficient RNASampler(seed): N/A RNASLOpt: N/A Sensitivity RNASampler(seed): N/A RNASLOpt: N/A Positive Predictive Value RNASampler(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Murlet(20) Matthews Correlation Coefficient RNASampler(seed): N/A Murlet(20): N/A Sensitivity RNASampler(seed): N/A Murlet(20): N/A Positive Predictive Value RNASampler(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs Alterna Matthews Correlation Coefficient RNASampler(seed): N/A Alterna: N/A Sensitivity RNASampler(seed): N/A Alterna: N/A Positive Predictive Value RNASampler(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs PPfold(20) Matthews Correlation Coefficient RNASampler(seed): N/A PPfold(20): N/A Sensitivity RNASampler(seed): N/A PPfold(20): N/A Positive Predictive Value RNASampler(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNASampler(seed) vs RNAwolf Matthews Correlation Coefficient RNASampler(seed): N/A RNAwolf: N/A Sensitivity RNASampler(seed): N/A RNAwolf: N/A Positive Predictive Value RNASampler(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs RNASampler(seed) Matthews Correlation Coefficient Mastr(20): N/A RNASampler(seed): N/A Sensitivity Mastr(20): N/A RNASampler(seed): N/A Positive Predictive Value Mastr(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
RNASLOpt	0 PETfold_pre2.0(seed) vs RNASLOpt Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNASLOpt: N/A Sensitivity PETfold_pre2.0(seed): N/A RNASLOpt: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 ContextFold vs RNASLOpt Matthews Correlation Coefficient ContextFold: 0.608 RNASLOpt: 0.000 Sensitivity ContextFold: 0.531 RNASLOpt: 0.000 Positive Predictive Value ContextFold: 0.697 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 CentroidAlifold(seed) vs RNASLOpt Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNASLOpt: N/A Sensitivity CentroidAlifold(seed): N/A RNASLOpt: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs RNASLOpt Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNASLOpt: N/A Sensitivity PETfold_pre2.0(20): N/A RNASLOpt: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs RNASLOpt Matthews Correlation Coefficient CentroidAlifold(20): N/A RNASLOpt: N/A Sensitivity CentroidAlifold(20): N/A RNASLOpt: N/A Positive Predictive Value CentroidAlifold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs RNASLOpt Matthews Correlation Coefficient RNAalifold(seed): N/A RNASLOpt: N/A Sensitivity RNAalifold(seed): N/A RNASLOpt: N/A Positive Predictive Value RNAalifold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs RNASLOpt Matthews Correlation Coefficient RNAalifold(20): N/A RNASLOpt: N/A Sensitivity RNAalifold(20): N/A RNASLOpt: N/A Positive Predictive Value RNAalifold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASLOpt vs MXScarna(seed) Matthews Correlation Coefficient RNASLOpt: N/A MXScarna(seed): N/A Sensitivity RNASLOpt: N/A MXScarna(seed): N/A Positive Predictive Value RNASLOpt: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MXScarna(20) vs RNASLOpt Matthews Correlation Coefficient MXScarna(20): N/A RNASLOpt: N/A Sensitivity MXScarna(20): N/A RNASLOpt: N/A Positive Predictive Value MXScarna(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs RNASLOpt Matthews Correlation Coefficient Carnac(20): N/A RNASLOpt: N/A Sensitivity Carnac(20): N/A RNASLOpt: N/A Positive Predictive Value Carnac(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 IPknot vs RNASLOpt Matthews Correlation Coefficient IPknot: 0.329 RNASLOpt: 0.000 Sensitivity IPknot: 0.235 RNASLOpt: 0.000 Positive Predictive Value IPknot: 0.462 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CentroidFold vs RNASLOpt Matthews Correlation Coefficient CentroidFold: 0.307 RNASLOpt: 0.000 Sensitivity CentroidFold: 0.212 RNASLOpt: 0.000 Positive Predictive Value CentroidFold: 0.447 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Contrafold vs RNASLOpt Matthews Correlation Coefficient Contrafold: 0.336 RNASLOpt: 0.000 Sensitivity Contrafold: 0.262 RNASLOpt: 0.000 Positive Predictive Value Contrafold: 0.433 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 RSpredict(seed) vs RNASLOpt Matthews Correlation Coefficient RSpredict(seed): N/A RNASLOpt: N/A Sensitivity RSpredict(seed): N/A RNASLOpt: N/A Positive Predictive Value RSpredict(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RNASLOpt Matthews Correlation Coefficient RSpredict(20): N/A RNASLOpt: N/A Sensitivity RSpredict(20): N/A RNASLOpt: N/A Positive Predictive Value RSpredict(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 Sfold vs RNASLOpt Matthews Correlation Coefficient Sfold: 0.383 RNASLOpt: 0.000 Sensitivity Sfold: 0.308 RNASLOpt: 0.000 Positive Predictive Value Sfold: 0.476 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 MaxExpect vs RNASLOpt Matthews Correlation Coefficient MaxExpect: 0.291 RNASLOpt: 0.000 Sensitivity MaxExpect: 0.250 RNASLOpt: 0.000 Positive Predictive Value MaxExpect: 0.340 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 ProbKnot vs RNASLOpt Matthews Correlation Coefficient ProbKnot: 0.286 RNASLOpt: 0.000 Sensitivity ProbKnot: 0.273 RNASLOpt: 0.000 Positive Predictive Value ProbKnot: 0.300 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 UNAFold vs RNASLOpt Matthews Correlation Coefficient UNAFold: 0.383 RNASLOpt: 0.000 Sensitivity UNAFold: 0.358 RNASLOpt: 0.000 Positive Predictive Value UNAFold: 0.412 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 CRWrnafold vs RNASLOpt Matthews Correlation Coefficient CRWrnafold: 0.311 RNASLOpt: 0.000 Sensitivity CRWrnafold: 0.304 RNASLOpt: 0.000 Positive Predictive Value CRWrnafold: 0.320 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Afold vs RNASLOpt Matthews Correlation Coefficient Afold: 0.385 RNASLOpt: 0.000 Sensitivity Afold: 0.358 RNASLOpt: 0.000 Positive Predictive Value Afold: 0.415 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 Fold vs RNASLOpt Matthews Correlation Coefficient Fold: 0.236 RNASLOpt: 0.000 Sensitivity Fold: 0.227 RNASLOpt: 0.000 Positive Predictive Value Fold: 0.247 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 RNAfold vs RNASLOpt Matthews Correlation Coefficient RNAfold: 0.386 RNASLOpt: 0.000 Sensitivity RNAfold: 0.358 RNASLOpt: 0.000 Positive Predictive Value RNAfold: 0.417 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	1 PknotsRG vs RNASLOpt Matthews Correlation Coefficient PknotsRG: 0.399 RNASLOpt: 0.000 Sensitivity PknotsRG: 0.369 RNASLOpt: 0.000 Positive Predictive Value PknotsRG: 0.432 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Murlet(seed) vs RNASLOpt Matthews Correlation Coefficient Murlet(seed): N/A RNASLOpt: N/A Sensitivity Murlet(seed): N/A RNASLOpt: N/A Positive Predictive Value Murlet(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 McQFold vs RNASLOpt Matthews Correlation Coefficient McQFold: 0.155 RNASLOpt: 0.000 Sensitivity McQFold: 0.131 RNASLOpt: 0.000 Positive Predictive Value McQFold: 0.184 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 NanoFolder vs RNASLOpt Matthews Correlation Coefficient NanoFolder: N/A RNASLOpt: N/A Sensitivity NanoFolder: N/A RNASLOpt: N/A Positive Predictive Value NanoFolder: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidHomfold‑LAST vs RNASLOpt Matthews Correlation Coefficient CentroidHomfold‑LAST: N/A RNASLOpt: N/A Sensitivity CentroidHomfold‑LAST: N/A RNASLOpt: N/A Positive Predictive Value CentroidHomfold‑LAST: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs RNASLOpt Matthews Correlation Coefficient CMfinder(seed): N/A RNASLOpt: N/A Sensitivity CMfinder(seed): N/A RNASLOpt: N/A Positive Predictive Value CMfinder(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAshapes vs RNASLOpt Matthews Correlation Coefficient RNAshapes: N/A RNASLOpt: N/A Sensitivity RNAshapes: N/A RNASLOpt: N/A Positive Predictive Value RNAshapes: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs RNASLOpt Matthews Correlation Coefficient Multilign(seed): N/A RNASLOpt: N/A Sensitivity Multilign(seed): N/A RNASLOpt: N/A Positive Predictive Value Multilign(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASLOpt vs Multilign(20) Matthews Correlation Coefficient RNASLOpt: N/A Multilign(20): N/A Sensitivity RNASLOpt: N/A Multilign(20): N/A Positive Predictive Value RNASLOpt: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNASLOpt Matthews Correlation Coefficient TurboFold(20): N/A RNASLOpt: N/A Sensitivity TurboFold(20): N/A RNASLOpt: N/A Positive Predictive Value TurboFold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs RNASLOpt Matthews Correlation Coefficient Mastr(seed): N/A RNASLOpt: N/A Sensitivity Mastr(seed): N/A RNASLOpt: N/A Positive Predictive Value Mastr(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs RNASLOpt Matthews Correlation Coefficient RNAsubopt: N/A RNASLOpt: N/A Sensitivity RNAsubopt: N/A RNASLOpt: N/A Positive Predictive Value RNAsubopt: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNASLOpt Matthews Correlation Coefficient HotKnots: N/A RNASLOpt: N/A Sensitivity HotKnots: N/A RNASLOpt: N/A Positive Predictive Value HotKnots: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNASLOpt Matthews Correlation Coefficient Pknots: N/A RNASLOpt: N/A Sensitivity Pknots: N/A RNASLOpt: N/A Positive Predictive Value Pknots: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNASLOpt Matthews Correlation Coefficient Cylofold: N/A RNASLOpt: N/A Sensitivity Cylofold: N/A RNASLOpt: N/A Positive Predictive Value Cylofold: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASLOpt vs MCFold Matthews Correlation Coefficient RNASLOpt: N/A MCFold: N/A Sensitivity RNASLOpt: N/A MCFold: N/A Positive Predictive Value RNASLOpt: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNASLOpt Matthews Correlation Coefficient Vsfold5: N/A RNASLOpt: N/A Sensitivity Vsfold5: N/A RNASLOpt: N/A Positive Predictive Value Vsfold5: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNASLOpt Matthews Correlation Coefficient Vsfold4: N/A RNASLOpt: N/A Sensitivity Vsfold4: N/A RNASLOpt: N/A Positive Predictive Value Vsfold4: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(seed) vs RNASLOpt Matthews Correlation Coefficient Carnac(seed): N/A RNASLOpt: N/A Sensitivity Carnac(seed): N/A RNASLOpt: N/A Positive Predictive Value Carnac(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNASLOpt Matthews Correlation Coefficient RNASampler(20): N/A RNASLOpt: N/A Sensitivity RNASampler(20): N/A RNASLOpt: N/A Positive Predictive Value RNASampler(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASLOpt vs CMfinder(20) Matthews Correlation Coefficient RNASLOpt: N/A CMfinder(20): N/A Sensitivity RNASLOpt: N/A CMfinder(20): N/A Positive Predictive Value RNASLOpt: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNASLOpt Matthews Correlation Coefficient PPfold(seed): N/A RNASLOpt: N/A Sensitivity PPfold(seed): N/A RNASLOpt: N/A Positive Predictive Value PPfold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNASLOpt Matthews Correlation Coefficient RDfolder: N/A RNASLOpt: N/A Sensitivity RDfolder: N/A RNASLOpt: N/A Positive Predictive Value RDfolder: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNASLOpt Matthews Correlation Coefficient TurboFold(seed): N/A RNASLOpt: N/A Sensitivity TurboFold(seed): N/A RNASLOpt: N/A Positive Predictive Value TurboFold(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNASLOpt Matthews Correlation Coefficient RNASampler(seed): N/A RNASLOpt: N/A Sensitivity RNASampler(seed): N/A RNASLOpt: N/A Positive Predictive Value RNASampler(seed): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Murlet(20) vs RNASLOpt Matthews Correlation Coefficient Murlet(20): N/A RNASLOpt: N/A Sensitivity Murlet(20): N/A RNASLOpt: N/A Positive Predictive Value Murlet(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs RNASLOpt Matthews Correlation Coefficient Alterna: N/A RNASLOpt: N/A Sensitivity Alterna: N/A RNASLOpt: N/A Positive Predictive Value Alterna: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs RNASLOpt Matthews Correlation Coefficient PPfold(20): N/A RNASLOpt: N/A Sensitivity PPfold(20): N/A RNASLOpt: N/A Positive Predictive Value PPfold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? RNAwolf vs RNASLOpt Matthews Correlation Coefficient RNAwolf: 0.197 RNASLOpt: 0.000 Sensitivity RNAwolf: 0.200 RNASLOpt: 0.000 Positive Predictive Value RNAwolf: 0.195 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	? Mastr(20) vs RNASLOpt Matthews Correlation Coefficient Mastr(20): N/A RNASLOpt: N/A Sensitivity Mastr(20): N/A RNASLOpt: N/A Positive Predictive Value Mastr(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Murlet(20)	9 PETfold_pre2.0(seed) vs Murlet(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.765 Murlet(20): 0.621 Sensitivity PETfold_pre2.0(seed): 0.733 Murlet(20): 0.544 Positive Predictive Value PETfold_pre2.0(seed): 0.799 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 ContextFold vs Murlet(20) Matthews Correlation Coefficient ContextFold: 0.745 Murlet(20): 0.621 Sensitivity ContextFold: 0.707 Murlet(20): 0.544 Positive Predictive Value ContextFold: 0.785 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	8 CentroidAlifold(seed) vs Murlet(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.766 Murlet(20): 0.649 Sensitivity CentroidAlifold(seed): 0.661 Murlet(20): 0.576 Positive Predictive Value CentroidAlifold(seed): 0.888 Murlet(20): 0.731 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	9 PETfold_pre2.0(20) vs Murlet(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.733 Murlet(20): 0.621 Sensitivity PETfold_pre2.0(20): 0.698 Murlet(20): 0.544 Positive Predictive Value PETfold_pre2.0(20): 0.770 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 CentroidAlifold(20) vs Murlet(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.726 Murlet(20): 0.621 Sensitivity CentroidAlifold(20): 0.617 Murlet(20): 0.544 Positive Predictive Value CentroidAlifold(20): 0.854 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	8 RNAalifold(seed) vs Murlet(20) Matthews Correlation Coefficient RNAalifold(seed): 0.730 Murlet(20): 0.649 Sensitivity RNAalifold(seed): 0.658 Murlet(20): 0.576 Positive Predictive Value RNAalifold(seed): 0.810 Murlet(20): 0.731 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	9 RNAalifold(20) vs Murlet(20) Matthews Correlation Coefficient RNAalifold(20): 0.672 Murlet(20): 0.621 Sensitivity RNAalifold(20): 0.619 Murlet(20): 0.544 Positive Predictive Value RNAalifold(20): 0.730 Murlet(20): 0.708 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	8 Murlet(20) vs MXScarna(seed) Matthews Correlation Coefficient Murlet(20): 0.649 MXScarna(seed): 0.632 Sensitivity Murlet(20): 0.576 MXScarna(seed): 0.567 Positive Predictive Value Murlet(20): 0.731 MXScarna(seed): 0.706 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs MXScarna(20) Matthews Correlation Coefficient Murlet(20): 0.621 MXScarna(20): 0.589 Sensitivity Murlet(20): 0.544 MXScarna(20): 0.534 Positive Predictive Value Murlet(20): 0.708 MXScarna(20): 0.650 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs Carnac(20) Matthews Correlation Coefficient Murlet(20): 0.621 Carnac(20): 0.528 Sensitivity Murlet(20): 0.544 Carnac(20): 0.320 Positive Predictive Value Murlet(20): 0.708 Carnac(20): 0.872 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs IPknot Matthews Correlation Coefficient Murlet(20): 0.621 IPknot: 0.536 Sensitivity Murlet(20): 0.544 IPknot: 0.466 Positive Predictive Value Murlet(20): 0.708 IPknot: 0.616 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs CentroidFold Matthews Correlation Coefficient Murlet(20): 0.621 CentroidFold: 0.486 Sensitivity Murlet(20): 0.544 CentroidFold: 0.413 Positive Predictive Value Murlet(20): 0.708 CentroidFold: 0.572 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs Contrafold Matthews Correlation Coefficient Murlet(20): 0.621 Contrafold: 0.467 Sensitivity Murlet(20): 0.544 Contrafold: 0.447 Positive Predictive Value Murlet(20): 0.708 Contrafold: 0.488 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	7 Murlet(20) vs RSpredict(seed) Matthews Correlation Coefficient Murlet(20): 0.636 RSpredict(seed): 0.466 Sensitivity Murlet(20): 0.564 RSpredict(seed): 0.389 Positive Predictive Value Murlet(20): 0.717 RSpredict(seed): 0.558 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs RSpredict(20) Matthews Correlation Coefficient Murlet(20): 0.621 RSpredict(20): 0.469 Sensitivity Murlet(20): 0.544 RSpredict(20): 0.417 Positive Predictive Value Murlet(20): 0.708 RSpredict(20): 0.527 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs Sfold Matthews Correlation Coefficient Murlet(20): 0.621 Sfold: 0.458 Sensitivity Murlet(20): 0.544 Sfold: 0.395 Positive Predictive Value Murlet(20): 0.708 Sfold: 0.530 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs MaxExpect Matthews Correlation Coefficient Murlet(20): 0.621 MaxExpect: 0.404 Sensitivity Murlet(20): 0.544 MaxExpect: 0.396 Positive Predictive Value Murlet(20): 0.708 MaxExpect: 0.414 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs ProbKnot Matthews Correlation Coefficient Murlet(20): 0.621 ProbKnot: 0.401 Sensitivity Murlet(20): 0.544 ProbKnot: 0.397 Positive Predictive Value Murlet(20): 0.708 ProbKnot: 0.406 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs UNAFold Matthews Correlation Coefficient Murlet(20): 0.621 UNAFold: 0.419 Sensitivity Murlet(20): 0.544 UNAFold: 0.418 Positive Predictive Value Murlet(20): 0.708 UNAFold: 0.420 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	3 Murlet(20) vs CRWrnafold Matthews Correlation Coefficient Murlet(20): 0.771 CRWrnafold: 0.531 Sensitivity Murlet(20): 0.702 CRWrnafold: 0.522 Positive Predictive Value Murlet(20): 0.847 CRWrnafold: 0.541 Number of pairs reference - predicted secondary structure: 3 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs Afold Matthews Correlation Coefficient Murlet(20): 0.621 Afold: 0.409 Sensitivity Murlet(20): 0.544 Afold: 0.407 Positive Predictive Value Murlet(20): 0.708 Afold: 0.411 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs Fold Matthews Correlation Coefficient Murlet(20): 0.621 Fold: 0.371 Sensitivity Murlet(20): 0.544 Fold: 0.375 Positive Predictive Value Murlet(20): 0.708 Fold: 0.368 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	9 Murlet(20) vs RNAfold Matthews Correlation Coefficient Murlet(20): 0.621 RNAfold: 0.386 Sensitivity Murlet(20): 0.544 RNAfold: 0.388 Positive Predictive Value Murlet(20): 0.708 RNAfold: 0.385 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	6 Murlet(20) vs PknotsRG Matthews Correlation Coefficient Murlet(20): 0.758 PknotsRG: 0.438 Sensitivity Murlet(20): 0.683 PknotsRG: 0.434 Positive Predictive Value Murlet(20): 0.842 PknotsRG: 0.443 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	0 Murlet(20) vs Murlet(seed) Matthews Correlation Coefficient Murlet(20): N/A Murlet(seed): N/A Sensitivity Murlet(20): N/A Murlet(seed): N/A Positive Predictive Value Murlet(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Murlet(20) Matthews Correlation Coefficient McQFold: N/A Murlet(20): N/A Sensitivity McQFold: N/A Murlet(20): N/A Positive Predictive Value McQFold: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Murlet(20) Matthews Correlation Coefficient NanoFolder: N/A Murlet(20): N/A Sensitivity NanoFolder: N/A Murlet(20): N/A Positive Predictive Value NanoFolder: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Murlet(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Murlet(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Murlet(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs CMfinder(seed) Matthews Correlation Coefficient Murlet(20): N/A CMfinder(seed): N/A Sensitivity Murlet(20): N/A CMfinder(seed): N/A Positive Predictive Value Murlet(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs RNAshapes Matthews Correlation Coefficient Murlet(20): N/A RNAshapes: N/A Sensitivity Murlet(20): N/A RNAshapes: N/A Positive Predictive Value Murlet(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs Multilign(seed) Matthews Correlation Coefficient Murlet(20): N/A Multilign(seed): N/A Sensitivity Murlet(20): N/A Multilign(seed): N/A Positive Predictive Value Murlet(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs Multilign(20) Matthews Correlation Coefficient Murlet(20): N/A Multilign(20): N/A Sensitivity Murlet(20): N/A Multilign(20): N/A Positive Predictive Value Murlet(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Murlet(20) Matthews Correlation Coefficient TurboFold(20): N/A Murlet(20): N/A Sensitivity TurboFold(20): N/A Murlet(20): N/A Positive Predictive Value TurboFold(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Murlet(20) Matthews Correlation Coefficient Mastr(seed): N/A Murlet(20): N/A Sensitivity Mastr(seed): N/A Murlet(20): N/A Positive Predictive Value Mastr(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs RNAsubopt Matthews Correlation Coefficient Murlet(20): N/A RNAsubopt: N/A Sensitivity Murlet(20): N/A RNAsubopt: N/A Positive Predictive Value Murlet(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Murlet(20) Matthews Correlation Coefficient HotKnots: N/A Murlet(20): N/A Sensitivity HotKnots: N/A Murlet(20): N/A Positive Predictive Value HotKnots: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Murlet(20) Matthews Correlation Coefficient Pknots: N/A Murlet(20): N/A Sensitivity Pknots: N/A Murlet(20): N/A Positive Predictive Value Pknots: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Murlet(20) Matthews Correlation Coefficient Cylofold: N/A Murlet(20): N/A Sensitivity Cylofold: N/A Murlet(20): N/A Positive Predictive Value Cylofold: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs MCFold Matthews Correlation Coefficient Murlet(20): N/A MCFold: N/A Sensitivity Murlet(20): N/A MCFold: N/A Positive Predictive Value Murlet(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Murlet(20) Matthews Correlation Coefficient Vsfold5: N/A Murlet(20): N/A Sensitivity Vsfold5: N/A Murlet(20): N/A Positive Predictive Value Vsfold5: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Murlet(20) Matthews Correlation Coefficient Vsfold4: N/A Murlet(20): N/A Sensitivity Vsfold4: N/A Murlet(20): N/A Positive Predictive Value Vsfold4: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs Carnac(seed) Matthews Correlation Coefficient Murlet(20): N/A Carnac(seed): N/A Sensitivity Murlet(20): N/A Carnac(seed): N/A Positive Predictive Value Murlet(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Murlet(20) Matthews Correlation Coefficient RNASampler(20): N/A Murlet(20): N/A Sensitivity RNASampler(20): N/A Murlet(20): N/A Positive Predictive Value RNASampler(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs CMfinder(20) Matthews Correlation Coefficient Murlet(20): N/A CMfinder(20): N/A Sensitivity Murlet(20): N/A CMfinder(20): N/A Positive Predictive Value Murlet(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Murlet(20) Matthews Correlation Coefficient PPfold(seed): N/A Murlet(20): N/A Sensitivity PPfold(seed): N/A Murlet(20): N/A Positive Predictive Value PPfold(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Murlet(20) Matthews Correlation Coefficient RDfolder: N/A Murlet(20): N/A Sensitivity RDfolder: N/A Murlet(20): N/A Positive Predictive Value RDfolder: N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Murlet(20) Matthews Correlation Coefficient TurboFold(seed): N/A Murlet(20): N/A Sensitivity TurboFold(seed): N/A Murlet(20): N/A Positive Predictive Value TurboFold(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Murlet(20) Matthews Correlation Coefficient RNASampler(seed): N/A Murlet(20): N/A Sensitivity RNASampler(seed): N/A Murlet(20): N/A Positive Predictive Value RNASampler(seed): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs RNASLOpt Matthews Correlation Coefficient Murlet(20): N/A RNASLOpt: N/A Sensitivity Murlet(20): N/A RNASLOpt: N/A Positive Predictive Value Murlet(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Murlet(20) vs Alterna Matthews Correlation Coefficient Murlet(20): N/A Alterna: N/A Sensitivity Murlet(20): N/A Alterna: N/A Positive Predictive Value Murlet(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Murlet(20) Matthews Correlation Coefficient PPfold(20): N/A Murlet(20): N/A Sensitivity PPfold(20): N/A Murlet(20): N/A Positive Predictive Value PPfold(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs RNAwolf Matthews Correlation Coefficient Murlet(20): N/A RNAwolf: N/A Sensitivity Murlet(20): N/A RNAwolf: N/A Positive Predictive Value Murlet(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Murlet(20) vs Mastr(20) Matthews Correlation Coefficient Murlet(20): 0.352 Mastr(20): 0.000 Sensitivity Murlet(20): 0.278 Mastr(20): 0.000 Positive Predictive Value Murlet(20): 0.445 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0
Alterna	0 Alterna vs PETfold_pre2.0(seed) Matthews Correlation Coefficient Alterna: N/A PETfold_pre2.0(seed): N/A Sensitivity Alterna: N/A PETfold_pre2.0(seed): N/A Positive Predictive Value Alterna: N/A PETfold_pre2.0(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ContextFold vs Alterna Matthews Correlation Coefficient ContextFold: N/A Alterna: N/A Sensitivity ContextFold: N/A Alterna: N/A Positive Predictive Value ContextFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(seed) vs Alterna Matthews Correlation Coefficient CentroidAlifold(seed): N/A Alterna: N/A Sensitivity CentroidAlifold(seed): N/A Alterna: N/A Positive Predictive Value CentroidAlifold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs Alterna Matthews Correlation Coefficient PETfold_pre2.0(20): N/A Alterna: N/A Sensitivity PETfold_pre2.0(20): N/A Alterna: N/A Positive Predictive Value PETfold_pre2.0(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs CentroidAlifold(20) Matthews Correlation Coefficient Alterna: N/A CentroidAlifold(20): N/A Sensitivity Alterna: N/A CentroidAlifold(20): N/A Positive Predictive Value Alterna: N/A CentroidAlifold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs Alterna Matthews Correlation Coefficient RNAalifold(seed): N/A Alterna: N/A Sensitivity RNAalifold(seed): N/A Alterna: N/A Positive Predictive Value RNAalifold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs Alterna Matthews Correlation Coefficient RNAalifold(20): N/A Alterna: N/A Sensitivity RNAalifold(20): N/A Alterna: N/A Positive Predictive Value RNAalifold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs MXScarna(seed) Matthews Correlation Coefficient Alterna: N/A MXScarna(seed): N/A Sensitivity Alterna: N/A MXScarna(seed): N/A Positive Predictive Value Alterna: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs MXScarna(20) Matthews Correlation Coefficient Alterna: N/A MXScarna(20): N/A Sensitivity Alterna: N/A MXScarna(20): N/A Positive Predictive Value Alterna: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Carnac(20) Matthews Correlation Coefficient Alterna: N/A Carnac(20): N/A Sensitivity Alterna: N/A Carnac(20): N/A Positive Predictive Value Alterna: N/A Carnac(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs IPknot Matthews Correlation Coefficient Alterna: N/A IPknot: N/A Sensitivity Alterna: N/A IPknot: N/A Positive Predictive Value Alterna: N/A IPknot: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs CentroidFold Matthews Correlation Coefficient Alterna: N/A CentroidFold: N/A Sensitivity Alterna: N/A CentroidFold: N/A Positive Predictive Value Alterna: N/A CentroidFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Contrafold vs Alterna Matthews Correlation Coefficient Contrafold: N/A Alterna: N/A Sensitivity Contrafold: N/A Alterna: N/A Positive Predictive Value Contrafold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(seed) vs Alterna Matthews Correlation Coefficient RSpredict(seed): N/A Alterna: N/A Sensitivity RSpredict(seed): N/A Alterna: N/A Positive Predictive Value RSpredict(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs Alterna Matthews Correlation Coefficient RSpredict(20): N/A Alterna: N/A Sensitivity RSpredict(20): N/A Alterna: N/A Positive Predictive Value RSpredict(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Sfold Matthews Correlation Coefficient Alterna: N/A Sfold: N/A Sensitivity Alterna: N/A Sfold: N/A Positive Predictive Value Alterna: N/A Sfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 MaxExpect vs Alterna Matthews Correlation Coefficient MaxExpect: N/A Alterna: N/A Sensitivity MaxExpect: N/A Alterna: N/A Positive Predictive Value MaxExpect: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 ProbKnot vs Alterna Matthews Correlation Coefficient ProbKnot: N/A Alterna: N/A Sensitivity ProbKnot: N/A Alterna: N/A Positive Predictive Value ProbKnot: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 UNAFold vs Alterna Matthews Correlation Coefficient UNAFold: N/A Alterna: N/A Sensitivity UNAFold: N/A Alterna: N/A Positive Predictive Value UNAFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs CRWrnafold Matthews Correlation Coefficient Alterna: N/A CRWrnafold: N/A Sensitivity Alterna: N/A CRWrnafold: N/A Positive Predictive Value Alterna: N/A CRWrnafold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Afold Matthews Correlation Coefficient Alterna: N/A Afold: N/A Sensitivity Alterna: N/A Afold: N/A Positive Predictive Value Alterna: N/A Afold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Fold vs Alterna Matthews Correlation Coefficient Fold: N/A Alterna: N/A Sensitivity Fold: N/A Alterna: N/A Positive Predictive Value Fold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs RNAfold Matthews Correlation Coefficient Alterna: N/A RNAfold: N/A Sensitivity Alterna: N/A RNAfold: N/A Positive Predictive Value Alterna: N/A RNAfold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PknotsRG vs Alterna Matthews Correlation Coefficient PknotsRG: N/A Alterna: N/A Sensitivity PknotsRG: N/A Alterna: N/A Positive Predictive Value PknotsRG: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Murlet(seed) Matthews Correlation Coefficient Alterna: N/A Murlet(seed): N/A Sensitivity Alterna: N/A Murlet(seed): N/A Positive Predictive Value Alterna: N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 McQFold vs Alterna Matthews Correlation Coefficient McQFold: N/A Alterna: N/A Sensitivity McQFold: N/A Alterna: N/A Positive Predictive Value McQFold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Alterna Matthews Correlation Coefficient NanoFolder: N/A Alterna: N/A Sensitivity NanoFolder: N/A Alterna: N/A Positive Predictive Value NanoFolder: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs CentroidHomfold‑LAST Matthews Correlation Coefficient Alterna: N/A CentroidHomfold‑LAST: N/A Sensitivity Alterna: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Alterna: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs Alterna Matthews Correlation Coefficient CMfinder(seed): N/A Alterna: N/A Sensitivity CMfinder(seed): N/A Alterna: N/A Positive Predictive Value CMfinder(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs RNAshapes Matthews Correlation Coefficient Alterna: N/A RNAshapes: N/A Sensitivity Alterna: N/A RNAshapes: N/A Positive Predictive Value Alterna: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs Alterna Matthews Correlation Coefficient Multilign(seed): N/A Alterna: N/A Sensitivity Multilign(seed): N/A Alterna: N/A Positive Predictive Value Multilign(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Multilign(20) Matthews Correlation Coefficient Alterna: N/A Multilign(20): N/A Sensitivity Alterna: N/A Multilign(20): N/A Positive Predictive Value Alterna: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs Alterna Matthews Correlation Coefficient TurboFold(20): N/A Alterna: N/A Sensitivity TurboFold(20): N/A Alterna: N/A Positive Predictive Value TurboFold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs Alterna Matthews Correlation Coefficient Mastr(seed): N/A Alterna: N/A Sensitivity Mastr(seed): N/A Alterna: N/A Positive Predictive Value Mastr(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs RNAsubopt Matthews Correlation Coefficient Alterna: N/A RNAsubopt: N/A Sensitivity Alterna: N/A RNAsubopt: N/A Positive Predictive Value Alterna: N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs Alterna Matthews Correlation Coefficient HotKnots: N/A Alterna: N/A Sensitivity HotKnots: N/A Alterna: N/A Positive Predictive Value HotKnots: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs Alterna Matthews Correlation Coefficient Pknots: N/A Alterna: N/A Sensitivity Pknots: N/A Alterna: N/A Positive Predictive Value Pknots: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs Alterna Matthews Correlation Coefficient Cylofold: N/A Alterna: N/A Sensitivity Cylofold: N/A Alterna: N/A Positive Predictive Value Cylofold: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs MCFold Matthews Correlation Coefficient Alterna: N/A MCFold: N/A Sensitivity Alterna: N/A MCFold: N/A Positive Predictive Value Alterna: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs Alterna Matthews Correlation Coefficient Vsfold5: N/A Alterna: N/A Sensitivity Vsfold5: N/A Alterna: N/A Positive Predictive Value Vsfold5: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs Alterna Matthews Correlation Coefficient Vsfold4: N/A Alterna: N/A Sensitivity Vsfold4: N/A Alterna: N/A Positive Predictive Value Vsfold4: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs Carnac(seed) Matthews Correlation Coefficient Alterna: N/A Carnac(seed): N/A Sensitivity Alterna: N/A Carnac(seed): N/A Positive Predictive Value Alterna: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Alterna Matthews Correlation Coefficient RNASampler(20): N/A Alterna: N/A Sensitivity RNASampler(20): N/A Alterna: N/A Positive Predictive Value RNASampler(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs CMfinder(20) Matthews Correlation Coefficient Alterna: N/A CMfinder(20): N/A Sensitivity Alterna: N/A CMfinder(20): N/A Positive Predictive Value Alterna: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs Alterna Matthews Correlation Coefficient PPfold(seed): N/A Alterna: N/A Sensitivity PPfold(seed): N/A Alterna: N/A Positive Predictive Value PPfold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs Alterna Matthews Correlation Coefficient RDfolder: N/A Alterna: N/A Sensitivity RDfolder: N/A Alterna: N/A Positive Predictive Value RDfolder: N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Alterna Matthews Correlation Coefficient TurboFold(seed): N/A Alterna: N/A Sensitivity TurboFold(seed): N/A Alterna: N/A Positive Predictive Value TurboFold(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs Alterna Matthews Correlation Coefficient RNASampler(seed): N/A Alterna: N/A Sensitivity RNASampler(seed): N/A Alterna: N/A Positive Predictive Value RNASampler(seed): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs RNASLOpt Matthews Correlation Coefficient Alterna: N/A RNASLOpt: N/A Sensitivity Alterna: N/A RNASLOpt: N/A Positive Predictive Value Alterna: N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Murlet(20) vs Alterna Matthews Correlation Coefficient Murlet(20): N/A Alterna: N/A Sensitivity Murlet(20): N/A Alterna: N/A Positive Predictive Value Murlet(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? PPfold(20) vs Alterna Matthews Correlation Coefficient PPfold(20): N/A Alterna: N/A Sensitivity PPfold(20): N/A Alterna: N/A Positive Predictive Value PPfold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Alterna vs RNAwolf Matthews Correlation Coefficient Alterna: N/A RNAwolf: N/A Sensitivity Alterna: N/A RNAwolf: N/A Positive Predictive Value Alterna: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? Mastr(20) vs Alterna Matthews Correlation Coefficient Mastr(20): N/A Alterna: N/A Sensitivity Mastr(20): N/A Alterna: N/A Positive Predictive Value Mastr(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
PPfold(20)	6 PETfold_pre2.0(seed) vs PPfold(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.775 PPfold(20): 0.746 Sensitivity PETfold_pre2.0(seed): 0.743 PPfold(20): 0.681 Positive Predictive Value PETfold_pre2.0(seed): 0.808 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 ContextFold vs PPfold(20) Matthews Correlation Coefficient ContextFold: 0.753 PPfold(20): 0.746 Sensitivity ContextFold: 0.710 PPfold(20): 0.681 Positive Predictive Value ContextFold: 0.799 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	4 CentroidAlifold(seed) vs PPfold(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.848 PPfold(20): 0.820 Sensitivity CentroidAlifold(seed): 0.776 PPfold(20): 0.766 Positive Predictive Value CentroidAlifold(seed): 0.926 PPfold(20): 0.879 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	6 PETfold_pre2.0(20) vs PPfold(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.751 PPfold(20): 0.746 Sensitivity PETfold_pre2.0(20): 0.717 PPfold(20): 0.681 Positive Predictive Value PETfold_pre2.0(20): 0.786 PPfold(20): 0.818 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs CentroidAlifold(20) Matthews Correlation Coefficient PPfold(20): 0.746 CentroidAlifold(20): 0.745 Sensitivity PPfold(20): 0.681 CentroidAlifold(20): 0.631 Positive Predictive Value PPfold(20): 0.818 CentroidAlifold(20): 0.880 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs RNAalifold(seed) Matthews Correlation Coefficient PPfold(20): 0.746 RNAalifold(seed): 0.702 Sensitivity PPfold(20): 0.681 RNAalifold(seed): 0.628 Positive Predictive Value PPfold(20): 0.818 RNAalifold(seed): 0.785 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs RNAalifold(20) Matthews Correlation Coefficient PPfold(20): 0.746 RNAalifold(20): 0.676 Sensitivity PPfold(20): 0.681 RNAalifold(20): 0.618 Positive Predictive Value PPfold(20): 0.818 RNAalifold(20): 0.739 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	4 PPfold(20) vs MXScarna(seed) Matthews Correlation Coefficient PPfold(20): 0.820 MXScarna(seed): 0.713 Sensitivity PPfold(20): 0.766 MXScarna(seed): 0.629 Positive Predictive Value PPfold(20): 0.879 MXScarna(seed): 0.808 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs MXScarna(20) Matthews Correlation Coefficient PPfold(20): 0.746 MXScarna(20): 0.629 Sensitivity PPfold(20): 0.681 MXScarna(20): 0.574 Positive Predictive Value PPfold(20): 0.818 MXScarna(20): 0.689 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs Carnac(20) Matthews Correlation Coefficient PPfold(20): 0.746 Carnac(20): 0.564 Sensitivity PPfold(20): 0.681 Carnac(20): 0.338 Positive Predictive Value PPfold(20): 0.818 Carnac(20): 0.940 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs IPknot Matthews Correlation Coefficient PPfold(20): 0.746 IPknot: 0.540 Sensitivity PPfold(20): 0.681 IPknot: 0.464 Positive Predictive Value PPfold(20): 0.818 IPknot: 0.628 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs CentroidFold Matthews Correlation Coefficient PPfold(20): 0.746 CentroidFold: 0.487 Sensitivity PPfold(20): 0.681 CentroidFold: 0.419 Positive Predictive Value PPfold(20): 0.818 CentroidFold: 0.565 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs Contrafold Matthews Correlation Coefficient PPfold(20): 0.746 Contrafold: 0.470 Sensitivity PPfold(20): 0.681 Contrafold: 0.453 Positive Predictive Value PPfold(20): 0.818 Contrafold: 0.489 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	4 PPfold(20) vs RSpredict(seed) Matthews Correlation Coefficient PPfold(20): 0.820 RSpredict(seed): 0.633 Sensitivity PPfold(20): 0.766 RSpredict(seed): 0.540 Positive Predictive Value PPfold(20): 0.879 RSpredict(seed): 0.743 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs RSpredict(20) Matthews Correlation Coefficient PPfold(20): 0.746 RSpredict(20): 0.504 Sensitivity PPfold(20): 0.681 RSpredict(20): 0.450 Positive Predictive Value PPfold(20): 0.818 RSpredict(20): 0.565 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs Sfold Matthews Correlation Coefficient PPfold(20): 0.746 Sfold: 0.480 Sensitivity PPfold(20): 0.681 Sfold: 0.397 Positive Predictive Value PPfold(20): 0.818 Sfold: 0.580 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs MaxExpect Matthews Correlation Coefficient PPfold(20): 0.746 MaxExpect: 0.415 Sensitivity PPfold(20): 0.681 MaxExpect: 0.401 Positive Predictive Value PPfold(20): 0.818 MaxExpect: 0.429 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs ProbKnot Matthews Correlation Coefficient PPfold(20): 0.746 ProbKnot: 0.414 Sensitivity PPfold(20): 0.681 ProbKnot: 0.403 Positive Predictive Value PPfold(20): 0.818 ProbKnot: 0.425 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs UNAFold Matthews Correlation Coefficient PPfold(20): 0.746 UNAFold: 0.441 Sensitivity PPfold(20): 0.681 UNAFold: 0.430 Positive Predictive Value PPfold(20): 0.818 UNAFold: 0.452 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	2 PPfold(20) vs CRWrnafold Matthews Correlation Coefficient PPfold(20): 0.844 CRWrnafold: 0.653 Sensitivity PPfold(20): 0.809 CRWrnafold: 0.640 Positive Predictive Value PPfold(20): 0.881 CRWrnafold: 0.666 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	5 PPfold(20) vs Afold Matthews Correlation Coefficient PPfold(20): 0.729 Afold: 0.400 Sensitivity PPfold(20): 0.658 Afold: 0.393 Positive Predictive Value PPfold(20): 0.808 Afold: 0.409 Number of pairs reference - predicted secondary structure: 5 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs Fold Matthews Correlation Coefficient PPfold(20): 0.746 Fold: 0.375 Sensitivity PPfold(20): 0.681 Fold: 0.375 Positive Predictive Value PPfold(20): 0.818 Fold: 0.375 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	6 PPfold(20) vs RNAfold Matthews Correlation Coefficient PPfold(20): 0.746 RNAfold: 0.424 Sensitivity PPfold(20): 0.681 RNAfold: 0.420 Positive Predictive Value PPfold(20): 0.818 RNAfold: 0.428 Number of pairs reference - predicted secondary structure: 6 Wilcoxon single-rank test P-value: 0.0	4 PPfold(20) vs PknotsRG Matthews Correlation Coefficient PPfold(20): 0.820 PknotsRG: 0.444 Sensitivity PPfold(20): 0.766 PknotsRG: 0.432 Positive Predictive Value PPfold(20): 0.879 PknotsRG: 0.457 Number of pairs reference - predicted secondary structure: 4 Wilcoxon single-rank test P-value: 0.0	0 PPfold(20) vs Murlet(seed) Matthews Correlation Coefficient PPfold(20): N/A Murlet(seed): N/A Sensitivity PPfold(20): N/A Murlet(seed): N/A Positive Predictive Value PPfold(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs McQFold Matthews Correlation Coefficient PPfold(20): N/A McQFold: N/A Sensitivity PPfold(20): N/A McQFold: N/A Positive Predictive Value PPfold(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs PPfold(20) Matthews Correlation Coefficient NanoFolder: N/A PPfold(20): N/A Sensitivity NanoFolder: N/A PPfold(20): N/A Positive Predictive Value NanoFolder: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient PPfold(20): N/A CentroidHomfold‑LAST: N/A Sensitivity PPfold(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value PPfold(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs CMfinder(seed) Matthews Correlation Coefficient PPfold(20): N/A CMfinder(seed): N/A Sensitivity PPfold(20): N/A CMfinder(seed): N/A Positive Predictive Value PPfold(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs RNAshapes Matthews Correlation Coefficient PPfold(20): N/A RNAshapes: N/A Sensitivity PPfold(20): N/A RNAshapes: N/A Positive Predictive Value PPfold(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Multilign(seed) Matthews Correlation Coefficient PPfold(20): N/A Multilign(seed): N/A Sensitivity PPfold(20): N/A Multilign(seed): N/A Positive Predictive Value PPfold(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Multilign(20) Matthews Correlation Coefficient PPfold(20): N/A Multilign(20): N/A Sensitivity PPfold(20): N/A Multilign(20): N/A Positive Predictive Value PPfold(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs TurboFold(20) Matthews Correlation Coefficient PPfold(20): N/A TurboFold(20): N/A Sensitivity PPfold(20): N/A TurboFold(20): N/A Positive Predictive Value PPfold(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs PPfold(20) Matthews Correlation Coefficient Mastr(seed): N/A PPfold(20): N/A Sensitivity Mastr(seed): N/A PPfold(20): N/A Positive Predictive Value Mastr(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs RNAsubopt Matthews Correlation Coefficient PPfold(20): N/A RNAsubopt: N/A Sensitivity PPfold(20): N/A RNAsubopt: N/A Positive Predictive Value PPfold(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs PPfold(20) Matthews Correlation Coefficient HotKnots: N/A PPfold(20): N/A Sensitivity HotKnots: N/A PPfold(20): N/A Positive Predictive Value HotKnots: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Pknots Matthews Correlation Coefficient PPfold(20): N/A Pknots: N/A Sensitivity PPfold(20): N/A Pknots: N/A Positive Predictive Value PPfold(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs PPfold(20) Matthews Correlation Coefficient Cylofold: N/A PPfold(20): N/A Sensitivity Cylofold: N/A PPfold(20): N/A Positive Predictive Value Cylofold: N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs MCFold Matthews Correlation Coefficient PPfold(20): N/A MCFold: N/A Sensitivity PPfold(20): N/A MCFold: N/A Positive Predictive Value PPfold(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Vsfold5 Matthews Correlation Coefficient PPfold(20): N/A Vsfold5: N/A Sensitivity PPfold(20): N/A Vsfold5: N/A Positive Predictive Value PPfold(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Vsfold4 Matthews Correlation Coefficient PPfold(20): N/A Vsfold4: N/A Sensitivity PPfold(20): N/A Vsfold4: N/A Positive Predictive Value PPfold(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Carnac(seed) Matthews Correlation Coefficient PPfold(20): N/A Carnac(seed): N/A Sensitivity PPfold(20): N/A Carnac(seed): N/A Positive Predictive Value PPfold(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs PPfold(20) Matthews Correlation Coefficient RNASampler(20): N/A PPfold(20): N/A Sensitivity RNASampler(20): N/A PPfold(20): N/A Positive Predictive Value RNASampler(20): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs CMfinder(20) Matthews Correlation Coefficient PPfold(20): N/A CMfinder(20): N/A Sensitivity PPfold(20): N/A CMfinder(20): N/A Positive Predictive Value PPfold(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs PPfold(seed) Matthews Correlation Coefficient PPfold(20): N/A PPfold(seed): N/A Sensitivity PPfold(20): N/A PPfold(seed): N/A Positive Predictive Value PPfold(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs RDfolder Matthews Correlation Coefficient PPfold(20): N/A RDfolder: N/A Sensitivity PPfold(20): N/A RDfolder: N/A Positive Predictive Value PPfold(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs PPfold(20) Matthews Correlation Coefficient TurboFold(seed): N/A PPfold(20): N/A Sensitivity TurboFold(seed): N/A PPfold(20): N/A Positive Predictive Value TurboFold(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs PPfold(20) Matthews Correlation Coefficient RNASampler(seed): N/A PPfold(20): N/A Sensitivity RNASampler(seed): N/A PPfold(20): N/A Positive Predictive Value RNASampler(seed): N/A PPfold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs RNASLOpt Matthews Correlation Coefficient PPfold(20): N/A RNASLOpt: N/A Sensitivity PPfold(20): N/A RNASLOpt: N/A Positive Predictive Value PPfold(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Murlet(20) Matthews Correlation Coefficient PPfold(20): N/A Murlet(20): N/A Sensitivity PPfold(20): N/A Murlet(20): N/A Positive Predictive Value PPfold(20): N/A Murlet(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs Alterna Matthews Correlation Coefficient PPfold(20): N/A Alterna: N/A Sensitivity PPfold(20): N/A Alterna: N/A Positive Predictive Value PPfold(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? PPfold(20) vs RNAwolf Matthews Correlation Coefficient PPfold(20): N/A RNAwolf: N/A Sensitivity PPfold(20): N/A RNAwolf: N/A Positive Predictive Value PPfold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	? PPfold(20) vs Mastr(20) Matthews Correlation Coefficient PPfold(20): 0.598 Mastr(20): 0.000 Sensitivity PPfold(20): 0.521 Mastr(20): 0.000 Positive Predictive Value PPfold(20): 0.686 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0
RNAwolf	0 PETfold_pre2.0(seed) vs RNAwolf Matthews Correlation Coefficient PETfold_pre2.0(seed): N/A RNAwolf: N/A Sensitivity PETfold_pre2.0(seed): N/A RNAwolf: N/A Positive Predictive Value PETfold_pre2.0(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	88 ContextFold vs RNAwolf Matthews Correlation Coefficient ContextFold: 0.682 RNAwolf: 0.199 Sensitivity ContextFold: 0.634 RNAwolf: 0.212 Positive Predictive Value ContextFold: 0.733 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	0 CentroidAlifold(seed) vs RNAwolf Matthews Correlation Coefficient CentroidAlifold(seed): N/A RNAwolf: N/A Sensitivity CentroidAlifold(seed): N/A RNAwolf: N/A Positive Predictive Value CentroidAlifold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PETfold_pre2.0(20) vs RNAwolf Matthews Correlation Coefficient PETfold_pre2.0(20): N/A RNAwolf: N/A Sensitivity PETfold_pre2.0(20): N/A RNAwolf: N/A Positive Predictive Value PETfold_pre2.0(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CentroidAlifold(20) vs RNAwolf Matthews Correlation Coefficient CentroidAlifold(20): N/A RNAwolf: N/A Sensitivity CentroidAlifold(20): N/A RNAwolf: N/A Positive Predictive Value CentroidAlifold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(seed) vs RNAwolf Matthews Correlation Coefficient RNAalifold(seed): N/A RNAwolf: N/A Sensitivity RNAalifold(seed): N/A RNAwolf: N/A Positive Predictive Value RNAalifold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAalifold(20) vs RNAwolf Matthews Correlation Coefficient RNAalifold(20): N/A RNAwolf: N/A Sensitivity RNAalifold(20): N/A RNAwolf: N/A Positive Predictive Value RNAalifold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs MXScarna(seed) Matthews Correlation Coefficient RNAwolf: N/A MXScarna(seed): N/A Sensitivity RNAwolf: N/A MXScarna(seed): N/A Positive Predictive Value RNAwolf: N/A MXScarna(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs MXScarna(20) Matthews Correlation Coefficient RNAwolf: N/A MXScarna(20): N/A Sensitivity RNAwolf: N/A MXScarna(20): N/A Positive Predictive Value RNAwolf: N/A MXScarna(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Carnac(20) vs RNAwolf Matthews Correlation Coefficient Carnac(20): N/A RNAwolf: N/A Sensitivity Carnac(20): N/A RNAwolf: N/A Positive Predictive Value Carnac(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	88 IPknot vs RNAwolf Matthews Correlation Coefficient IPknot: 0.441 RNAwolf: 0.199 Sensitivity IPknot: 0.354 RNAwolf: 0.212 Positive Predictive Value IPknot: 0.550 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 CentroidFold vs RNAwolf Matthews Correlation Coefficient CentroidFold: 0.435 RNAwolf: 0.199 Sensitivity CentroidFold: 0.353 RNAwolf: 0.212 Positive Predictive Value CentroidFold: 0.535 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 Contrafold vs RNAwolf Matthews Correlation Coefficient Contrafold: 0.433 RNAwolf: 0.199 Sensitivity Contrafold: 0.400 RNAwolf: 0.212 Positive Predictive Value Contrafold: 0.470 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	0 RSpredict(seed) vs RNAwolf Matthews Correlation Coefficient RSpredict(seed): N/A RNAwolf: N/A Sensitivity RSpredict(seed): N/A RNAwolf: N/A Positive Predictive Value RSpredict(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RSpredict(20) vs RNAwolf Matthews Correlation Coefficient RSpredict(20): N/A RNAwolf: N/A Sensitivity RSpredict(20): N/A RNAwolf: N/A Positive Predictive Value RSpredict(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	88 Sfold vs RNAwolf Matthews Correlation Coefficient Sfold: 0.374 RNAwolf: 0.199 Sensitivity Sfold: 0.321 RNAwolf: 0.212 Positive Predictive Value Sfold: 0.436 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 MaxExpect vs RNAwolf Matthews Correlation Coefficient MaxExpect: 0.378 RNAwolf: 0.199 Sensitivity MaxExpect: 0.357 RNAwolf: 0.212 Positive Predictive Value MaxExpect: 0.401 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 ProbKnot vs RNAwolf Matthews Correlation Coefficient ProbKnot: 0.373 RNAwolf: 0.199 Sensitivity ProbKnot: 0.367 RNAwolf: 0.212 Positive Predictive Value ProbKnot: 0.379 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 UNAFold vs RNAwolf Matthews Correlation Coefficient UNAFold: 0.334 RNAwolf: 0.199 Sensitivity UNAFold: 0.331 RNAwolf: 0.212 Positive Predictive Value UNAFold: 0.338 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 CRWrnafold vs RNAwolf Matthews Correlation Coefficient CRWrnafold: 0.296 RNAwolf: 0.199 Sensitivity CRWrnafold: 0.302 RNAwolf: 0.212 Positive Predictive Value CRWrnafold: 0.292 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	71 Afold vs RNAwolf Matthews Correlation Coefficient Afold: 0.324 RNAwolf: 0.195 Sensitivity Afold: 0.320 RNAwolf: 0.206 Positive Predictive Value Afold: 0.329 RNAwolf: 0.185 Number of pairs reference - predicted secondary structure: 71 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 Fold vs RNAwolf Matthews Correlation Coefficient Fold: 0.341 RNAwolf: 0.199 Sensitivity Fold: 0.344 RNAwolf: 0.212 Positive Predictive Value Fold: 0.340 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 RNAfold vs RNAwolf Matthews Correlation Coefficient RNAfold: 0.324 RNAwolf: 0.199 Sensitivity RNAfold: 0.324 RNAwolf: 0.212 Positive Predictive Value RNAfold: 0.324 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	88 PknotsRG vs RNAwolf Matthews Correlation Coefficient PknotsRG: 0.328 RNAwolf: 0.199 Sensitivity PknotsRG: 0.327 RNAwolf: 0.212 Positive Predictive Value PknotsRG: 0.329 RNAwolf: 0.188 Number of pairs reference - predicted secondary structure: 88 Wilcoxon single-rank test P-value: 3.56938820447e-08	0 Murlet(seed) vs RNAwolf Matthews Correlation Coefficient Murlet(seed): N/A RNAwolf: N/A Sensitivity Murlet(seed): N/A RNAwolf: N/A Positive Predictive Value Murlet(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	7 McQFold vs RNAwolf Matthews Correlation Coefficient McQFold: 0.301 RNAwolf: 0.202 Sensitivity McQFold: 0.283 RNAwolf: 0.216 Positive Predictive Value McQFold: 0.322 RNAwolf: 0.190 Number of pairs reference - predicted secondary structure: 7 Wilcoxon single-rank test P-value: 0.0	0 NanoFolder vs RNAwolf Matthews Correlation Coefficient NanoFolder: N/A RNAwolf: N/A Sensitivity NanoFolder: N/A RNAwolf: N/A Positive Predictive Value NanoFolder: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs CentroidHomfold‑LAST Matthews Correlation Coefficient RNAwolf: N/A CentroidHomfold‑LAST: N/A Sensitivity RNAwolf: N/A CentroidHomfold‑LAST: N/A Positive Predictive Value RNAwolf: N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 CMfinder(seed) vs RNAwolf Matthews Correlation Coefficient CMfinder(seed): N/A RNAwolf: N/A Sensitivity CMfinder(seed): N/A RNAwolf: N/A Positive Predictive Value CMfinder(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs RNAshapes Matthews Correlation Coefficient RNAwolf: N/A RNAshapes: N/A Sensitivity RNAwolf: N/A RNAshapes: N/A Positive Predictive Value RNAwolf: N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Multilign(seed) vs RNAwolf Matthews Correlation Coefficient Multilign(seed): N/A RNAwolf: N/A Sensitivity Multilign(seed): N/A RNAwolf: N/A Positive Predictive Value Multilign(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs Multilign(20) Matthews Correlation Coefficient RNAwolf: N/A Multilign(20): N/A Sensitivity RNAwolf: N/A Multilign(20): N/A Positive Predictive Value RNAwolf: N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(20) vs RNAwolf Matthews Correlation Coefficient TurboFold(20): N/A RNAwolf: N/A Sensitivity TurboFold(20): N/A RNAwolf: N/A Positive Predictive Value TurboFold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(seed) vs RNAwolf Matthews Correlation Coefficient Mastr(seed): N/A RNAwolf: N/A Sensitivity Mastr(seed): N/A RNAwolf: N/A Positive Predictive Value Mastr(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAsubopt vs RNAwolf Matthews Correlation Coefficient RNAsubopt: N/A RNAwolf: N/A Sensitivity RNAsubopt: N/A RNAwolf: N/A Positive Predictive Value RNAsubopt: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 HotKnots vs RNAwolf Matthews Correlation Coefficient HotKnots: N/A RNAwolf: N/A Sensitivity HotKnots: N/A RNAwolf: N/A Positive Predictive Value HotKnots: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Pknots vs RNAwolf Matthews Correlation Coefficient Pknots: N/A RNAwolf: N/A Sensitivity Pknots: N/A RNAwolf: N/A Positive Predictive Value Pknots: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Cylofold vs RNAwolf Matthews Correlation Coefficient Cylofold: N/A RNAwolf: N/A Sensitivity Cylofold: N/A RNAwolf: N/A Positive Predictive Value Cylofold: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs MCFold Matthews Correlation Coefficient RNAwolf: N/A MCFold: N/A Sensitivity RNAwolf: N/A MCFold: N/A Positive Predictive Value RNAwolf: N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold5 vs RNAwolf Matthews Correlation Coefficient Vsfold5: N/A RNAwolf: N/A Sensitivity Vsfold5: N/A RNAwolf: N/A Positive Predictive Value Vsfold5: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Vsfold4 vs RNAwolf Matthews Correlation Coefficient Vsfold4: N/A RNAwolf: N/A Sensitivity Vsfold4: N/A RNAwolf: N/A Positive Predictive Value Vsfold4: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs Carnac(seed) Matthews Correlation Coefficient RNAwolf: N/A Carnac(seed): N/A Sensitivity RNAwolf: N/A Carnac(seed): N/A Positive Predictive Value RNAwolf: N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs RNAwolf Matthews Correlation Coefficient RNASampler(20): N/A RNAwolf: N/A Sensitivity RNASampler(20): N/A RNAwolf: N/A Positive Predictive Value RNASampler(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNAwolf vs CMfinder(20) Matthews Correlation Coefficient RNAwolf: N/A CMfinder(20): N/A Sensitivity RNAwolf: N/A CMfinder(20): N/A Positive Predictive Value RNAwolf: N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(seed) vs RNAwolf Matthews Correlation Coefficient PPfold(seed): N/A RNAwolf: N/A Sensitivity PPfold(seed): N/A RNAwolf: N/A Positive Predictive Value PPfold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RDfolder vs RNAwolf Matthews Correlation Coefficient RDfolder: N/A RNAwolf: N/A Sensitivity RDfolder: N/A RNAwolf: N/A Positive Predictive Value RDfolder: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs RNAwolf Matthews Correlation Coefficient TurboFold(seed): N/A RNAwolf: N/A Sensitivity TurboFold(seed): N/A RNAwolf: N/A Positive Predictive Value TurboFold(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(seed) vs RNAwolf Matthews Correlation Coefficient RNASampler(seed): N/A RNAwolf: N/A Sensitivity RNASampler(seed): N/A RNAwolf: N/A Positive Predictive Value RNASampler(seed): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	1 RNAwolf vs RNASLOpt Matthews Correlation Coefficient RNAwolf: 0.197 RNASLOpt: 0.000 Sensitivity RNAwolf: 0.200 RNASLOpt: 0.000 Positive Predictive Value RNAwolf: 0.195 RNASLOpt: 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Murlet(20) vs RNAwolf Matthews Correlation Coefficient Murlet(20): N/A RNAwolf: N/A Sensitivity Murlet(20): N/A RNAwolf: N/A Positive Predictive Value Murlet(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Alterna vs RNAwolf Matthews Correlation Coefficient Alterna: N/A RNAwolf: N/A Sensitivity Alterna: N/A RNAwolf: N/A Positive Predictive Value Alterna: N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 PPfold(20) vs RNAwolf Matthews Correlation Coefficient PPfold(20): N/A RNAwolf: N/A Sensitivity PPfold(20): N/A RNAwolf: N/A Positive Predictive Value PPfold(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A		? Mastr(20) vs RNAwolf Matthews Correlation Coefficient Mastr(20): N/A RNAwolf: N/A Sensitivity Mastr(20): N/A RNAwolf: N/A Positive Predictive Value Mastr(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A
Mastr(20)	27 PETfold_pre2.0(seed) vs Mastr(20) Matthews Correlation Coefficient PETfold_pre2.0(seed): 0.644 Mastr(20): 0.000 Sensitivity PETfold_pre2.0(seed): 0.610 Mastr(20): 0.000 Positive Predictive Value PETfold_pre2.0(seed): 0.680 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08	27 ContextFold vs Mastr(20) Matthews Correlation Coefficient ContextFold: 0.459 Mastr(20): 0.000 Sensitivity ContextFold: 0.434 Mastr(20): 0.000 Positive Predictive Value ContextFold: 0.486 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.02343278931e-08	9 CentroidAlifold(seed) vs Mastr(20) Matthews Correlation Coefficient CentroidAlifold(seed): 0.543 Mastr(20): 0.000 Sensitivity CentroidAlifold(seed): 0.386 Mastr(20): 0.000 Positive Predictive Value CentroidAlifold(seed): 0.765 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	27 PETfold_pre2.0(20) vs Mastr(20) Matthews Correlation Coefficient PETfold_pre2.0(20): 0.570 Mastr(20): 0.000 Sensitivity PETfold_pre2.0(20): 0.534 Mastr(20): 0.000 Positive Predictive Value PETfold_pre2.0(20): 0.609 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	27 CentroidAlifold(20) vs Mastr(20) Matthews Correlation Coefficient CentroidAlifold(20): 0.523 Mastr(20): 0.000 Sensitivity CentroidAlifold(20): 0.381 Mastr(20): 0.000 Positive Predictive Value CentroidAlifold(20): 0.718 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08	12 RNAalifold(seed) vs Mastr(20) Matthews Correlation Coefficient RNAalifold(seed): 0.459 Mastr(20): 0.000 Sensitivity RNAalifold(seed): 0.384 Mastr(20): 0.000 Positive Predictive Value RNAalifold(seed): 0.547 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 12 Wilcoxon single-rank test P-value: 2.1413769576e-08	27 RNAalifold(20) vs Mastr(20) Matthews Correlation Coefficient RNAalifold(20): 0.440 Mastr(20): 0.000 Sensitivity RNAalifold(20): 0.389 Mastr(20): 0.000 Positive Predictive Value RNAalifold(20): 0.498 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08	9 MXScarna(seed) vs Mastr(20) Matthews Correlation Coefficient MXScarna(seed): 0.472 Mastr(20): 0.000 Sensitivity MXScarna(seed): 0.437 Mastr(20): 0.000 Positive Predictive Value MXScarna(seed): 0.511 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 9 Wilcoxon single-rank test P-value: 0.0	27 MXScarna(20) vs Mastr(20) Matthews Correlation Coefficient MXScarna(20): 0.455 Mastr(20): 0.000 Sensitivity MXScarna(20): 0.424 Mastr(20): 0.000 Positive Predictive Value MXScarna(20): 0.489 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	27 Carnac(20) vs Mastr(20) Matthews Correlation Coefficient Carnac(20): 0.445 Mastr(20): 0.000 Sensitivity Carnac(20): 0.241 Mastr(20): 0.000 Positive Predictive Value Carnac(20): 0.824 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	27 IPknot vs Mastr(20) Matthews Correlation Coefficient IPknot: 0.385 Mastr(20): 0.000 Sensitivity IPknot: 0.339 Mastr(20): 0.000 Positive Predictive Value IPknot: 0.439 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08	26 CentroidFold vs Mastr(20) Matthews Correlation Coefficient CentroidFold: 0.383 Mastr(20): 0.000 Sensitivity CentroidFold: 0.336 Mastr(20): 0.000 Positive Predictive Value CentroidFold: 0.437 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 26 Wilcoxon single-rank test P-value: 5.23657817852e-08	27 Contrafold vs Mastr(20) Matthews Correlation Coefficient Contrafold: 0.371 Mastr(20): 0.000 Sensitivity Contrafold: 0.364 Mastr(20): 0.000 Positive Predictive Value Contrafold: 0.379 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08	8 RSpredict(seed) vs Mastr(20) Matthews Correlation Coefficient RSpredict(seed): 0.000 Mastr(20): 0.000 Sensitivity RSpredict(seed): 0.000 Mastr(20): 0.000 Positive Predictive Value RSpredict(seed): 0.000 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 8 Wilcoxon single-rank test P-value: 0.0	27 RSpredict(20) vs Mastr(20) Matthews Correlation Coefficient RSpredict(20): 0.115 Mastr(20): 0.000 Sensitivity RSpredict(20): 0.104 Mastr(20): 0.000 Positive Predictive Value RSpredict(20): 0.128 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08	27 Sfold vs Mastr(20) Matthews Correlation Coefficient Sfold: 0.333 Mastr(20): 0.000 Sensitivity Sfold: 0.297 Mastr(20): 0.000 Positive Predictive Value Sfold: 0.375 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.1503931209e-08	27 MaxExpect vs Mastr(20) Matthews Correlation Coefficient MaxExpect: 0.320 Mastr(20): 0.000 Sensitivity MaxExpect: 0.320 Mastr(20): 0.000 Positive Predictive Value MaxExpect: 0.321 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	27 ProbKnot vs Mastr(20) Matthews Correlation Coefficient ProbKnot: 0.313 Mastr(20): 0.000 Sensitivity ProbKnot: 0.319 Mastr(20): 0.000 Positive Predictive Value ProbKnot: 0.308 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.02343278931e-08	27 UNAFold vs Mastr(20) Matthews Correlation Coefficient UNAFold: 0.293 Mastr(20): 0.000 Sensitivity UNAFold: 0.299 Mastr(20): 0.000 Positive Predictive Value UNAFold: 0.288 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	1 CRWrnafold vs Mastr(20) Matthews Correlation Coefficient CRWrnafold: 0.186 Mastr(20): 0.000 Sensitivity CRWrnafold: 0.183 Mastr(20): 0.000 Positive Predictive Value CRWrnafold: 0.190 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	25 Afold vs Mastr(20) Matthews Correlation Coefficient Afold: 0.305 Mastr(20): 0.000 Sensitivity Afold: 0.313 Mastr(20): 0.000 Positive Predictive Value Afold: 0.299 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 25 Wilcoxon single-rank test P-value: 5.10776592382e-08	27 Fold vs Mastr(20) Matthews Correlation Coefficient Fold: 0.298 Mastr(20): 0.000 Sensitivity Fold: 0.310 Mastr(20): 0.000 Positive Predictive Value Fold: 0.288 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.19332990918e-08	27 RNAfold vs Mastr(20) Matthews Correlation Coefficient RNAfold: 0.302 Mastr(20): 0.000 Sensitivity RNAfold: 0.311 Mastr(20): 0.000 Positive Predictive Value RNAfold: 0.293 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 27 Wilcoxon single-rank test P-value: 5.23657817852e-08	1 PknotsRG vs Mastr(20) Matthews Correlation Coefficient PknotsRG: 0.243 Mastr(20): 0.000 Sensitivity PknotsRG: 0.240 Mastr(20): 0.000 Positive Predictive Value PknotsRG: 0.247 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 1 Wilcoxon single-rank test P-value: 0.0	0 Mastr(20) vs Murlet(seed) Matthews Correlation Coefficient Mastr(20): N/A Murlet(seed): N/A Sensitivity Mastr(20): N/A Murlet(seed): N/A Positive Predictive Value Mastr(20): N/A Murlet(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs McQFold Matthews Correlation Coefficient Mastr(20): N/A McQFold: N/A Sensitivity Mastr(20): N/A McQFold: N/A Positive Predictive Value Mastr(20): N/A McQFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 NanoFolder vs Mastr(20) Matthews Correlation Coefficient NanoFolder: N/A Mastr(20): N/A Sensitivity NanoFolder: N/A Mastr(20): N/A Positive Predictive Value NanoFolder: N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs CentroidHomfold‑LAST Matthews Correlation Coefficient Mastr(20): N/A CentroidHomfold‑LAST: N/A Sensitivity Mastr(20): N/A CentroidHomfold‑LAST: N/A Positive Predictive Value Mastr(20): N/A CentroidHomfold‑LAST: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs CMfinder(seed) Matthews Correlation Coefficient Mastr(20): N/A CMfinder(seed): N/A Sensitivity Mastr(20): N/A CMfinder(seed): N/A Positive Predictive Value Mastr(20): N/A CMfinder(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs RNAshapes Matthews Correlation Coefficient Mastr(20): N/A RNAshapes: N/A Sensitivity Mastr(20): N/A RNAshapes: N/A Positive Predictive Value Mastr(20): N/A RNAshapes: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Multilign(seed) Matthews Correlation Coefficient Mastr(20): N/A Multilign(seed): N/A Sensitivity Mastr(20): N/A Multilign(seed): N/A Positive Predictive Value Mastr(20): N/A Multilign(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Multilign(20) Matthews Correlation Coefficient Mastr(20): N/A Multilign(20): N/A Sensitivity Mastr(20): N/A Multilign(20): N/A Positive Predictive Value Mastr(20): N/A Multilign(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs TurboFold(20) Matthews Correlation Coefficient Mastr(20): N/A TurboFold(20): N/A Sensitivity Mastr(20): N/A TurboFold(20): N/A Positive Predictive Value Mastr(20): N/A TurboFold(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	2 Mastr(20) vs Mastr(seed) Matthews Correlation Coefficient Mastr(20): 0.000 Mastr(seed): 0.000 Sensitivity Mastr(20): 0.000 Mastr(seed): 0.000 Positive Predictive Value Mastr(20): 0.000 Mastr(seed): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	0 Mastr(20) vs RNAsubopt Matthews Correlation Coefficient Mastr(20): N/A RNAsubopt: N/A Sensitivity Mastr(20): N/A RNAsubopt: N/A Positive Predictive Value Mastr(20): N/A RNAsubopt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs HotKnots Matthews Correlation Coefficient Mastr(20): N/A HotKnots: N/A Sensitivity Mastr(20): N/A HotKnots: N/A Positive Predictive Value Mastr(20): N/A HotKnots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Pknots Matthews Correlation Coefficient Mastr(20): N/A Pknots: N/A Sensitivity Mastr(20): N/A Pknots: N/A Positive Predictive Value Mastr(20): N/A Pknots: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Cylofold Matthews Correlation Coefficient Mastr(20): N/A Cylofold: N/A Sensitivity Mastr(20): N/A Cylofold: N/A Positive Predictive Value Mastr(20): N/A Cylofold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs MCFold Matthews Correlation Coefficient Mastr(20): N/A MCFold: N/A Sensitivity Mastr(20): N/A MCFold: N/A Positive Predictive Value Mastr(20): N/A MCFold: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Vsfold5 Matthews Correlation Coefficient Mastr(20): N/A Vsfold5: N/A Sensitivity Mastr(20): N/A Vsfold5: N/A Positive Predictive Value Mastr(20): N/A Vsfold5: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Vsfold4 Matthews Correlation Coefficient Mastr(20): N/A Vsfold4: N/A Sensitivity Mastr(20): N/A Vsfold4: N/A Positive Predictive Value Mastr(20): N/A Vsfold4: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs Carnac(seed) Matthews Correlation Coefficient Mastr(20): N/A Carnac(seed): N/A Sensitivity Mastr(20): N/A Carnac(seed): N/A Positive Predictive Value Mastr(20): N/A Carnac(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 RNASampler(20) vs Mastr(20) Matthews Correlation Coefficient RNASampler(20): N/A Mastr(20): N/A Sensitivity RNASampler(20): N/A Mastr(20): N/A Positive Predictive Value RNASampler(20): N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs CMfinder(20) Matthews Correlation Coefficient Mastr(20): N/A CMfinder(20): N/A Sensitivity Mastr(20): N/A CMfinder(20): N/A Positive Predictive Value Mastr(20): N/A CMfinder(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs PPfold(seed) Matthews Correlation Coefficient Mastr(20): N/A PPfold(seed): N/A Sensitivity Mastr(20): N/A PPfold(seed): N/A Positive Predictive Value Mastr(20): N/A PPfold(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs RDfolder Matthews Correlation Coefficient Mastr(20): N/A RDfolder: N/A Sensitivity Mastr(20): N/A RDfolder: N/A Positive Predictive Value Mastr(20): N/A RDfolder: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 TurboFold(seed) vs Mastr(20) Matthews Correlation Coefficient TurboFold(seed): N/A Mastr(20): N/A Sensitivity TurboFold(seed): N/A Mastr(20): N/A Positive Predictive Value TurboFold(seed): N/A Mastr(20): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs RNASampler(seed) Matthews Correlation Coefficient Mastr(20): N/A RNASampler(seed): N/A Sensitivity Mastr(20): N/A RNASampler(seed): N/A Positive Predictive Value Mastr(20): N/A RNASampler(seed): N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	0 Mastr(20) vs RNASLOpt Matthews Correlation Coefficient Mastr(20): N/A RNASLOpt: N/A Sensitivity Mastr(20): N/A RNASLOpt: N/A Positive Predictive Value Mastr(20): N/A RNASLOpt: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	2 Murlet(20) vs Mastr(20) Matthews Correlation Coefficient Murlet(20): 0.352 Mastr(20): 0.000 Sensitivity Murlet(20): 0.278 Mastr(20): 0.000 Positive Predictive Value Murlet(20): 0.445 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	0 Mastr(20) vs Alterna Matthews Correlation Coefficient Mastr(20): N/A Alterna: N/A Sensitivity Mastr(20): N/A Alterna: N/A Positive Predictive Value Mastr(20): N/A Alterna: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A	2 PPfold(20) vs Mastr(20) Matthews Correlation Coefficient PPfold(20): 0.598 Mastr(20): 0.000 Sensitivity PPfold(20): 0.521 Mastr(20): 0.000 Positive Predictive Value PPfold(20): 0.686 Mastr(20): 0.000 Number of pairs reference - predicted secondary structure: 2 Wilcoxon single-rank test P-value: 0.0	0 Mastr(20) vs RNAwolf Matthews Correlation Coefficient Mastr(20): N/A RNAwolf: N/A Sensitivity Mastr(20): N/A RNAwolf: N/A Positive Predictive Value Mastr(20): N/A RNAwolf: N/A Number of pairs reference - predicted secondary structure: 0 Wilcoxon single-rank test P-value: N/A

Matthews Correlation Coefficients (MCC) plotted for all methods in a ranking. MCCs were calculated by taking into account all reference and predicted RNA structures by a given method in the entire ranking. The plot includes only methods for which at least 40% of comparisons with other methods is valid (i.e. at least 40% of the comparisons were based on more than 10 predictions for common targets).