CompaRNA - on-line benchmarks of RNA structure prediction methods

CompaRNA - on-line benchmarks of RNA structure prediction methods

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RNA Secondary Structure Atlas - PDB

Table of contents:

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Browse by RNA id:

RNA	Rfam family	Length	Added to CompaRNA
3JYX_5	-	3170	2009-12-22
3KIY_A	-	2848	2009-12-15
2WDL_A	-	2807	2009-04-14
3J20_2	SSU_rRNA_archaea	1495	2012-11-28
3ZEX_B	-	1465	2013-02-13
5AJ3_A	SSU_rRNA_microsporidia	960	2015-04-22
3J6V_A	-	955	2014-06-18
3J2C_N	SSU_rRNA_bacteria	927	2013-01-17
3J2C_M	-	462	2013-01-17
3IZ4_A	tmRNA	377	2010-10-19
3IYQ_A	tmRNA	349	2010-10-19
4UE5_A	Metazoa_SRP	299	2015-09-09
4UE4_A	Bacteria_large_SRP	266	2015-09-09
4C4Q_N	IRES_Pesti	233	2013-10-30
3ZEX_E	-	210	2013-02-13
4P8Z_A	GIR1	188	2014-05-28
4R4P_A	-	185	2015-09-30
3ZEX_G	-	182	2013-02-13
3ZEX_C	5_8S_rRNA	169	2013-02-13
3PDR_A	ykoK	161	2011-02-23
4ULF_C	5_8S_rRNA	158	2014-10-22
4UK0_C	5_8S_rRNA	158	2014-10-22
4UKS_K	5_8S_rRNA	158	2014-10-22
4UJQ_C	5_8S_rRNA	158	2014-10-22
4UJG_C	5_8S_rRNA	158	2014-10-22
4ULC_K	5_8S_rRNA	158	2014-10-22
4UK5_C	5_8S_rRNA	158	2014-10-22
4ULQ_C	5_8S_rRNA	158	2014-10-22
4ULH_K	5_8S_rRNA	158	2014-10-22
4UL5_C	5_8S_rRNA	158	2014-10-22
4UL2_K	5_8S_rRNA	158	2014-10-22
4UK2_K	5_8S_rRNA	158	2014-10-22
4UKG_C	5_8S_rRNA	158	2014-10-22
4UJL_C	5_8S_rRNA	158	2014-10-22
4UKX_K	5_8S_rRNA	158	2014-10-22
4UKV_C	5_8S_rRNA	158	2014-10-22
4ULK_C	5_8S_rRNA	158	2014-10-22
4UJX_K	5_8S_rRNA	158	2014-10-22
4ULN_K	5_8S_rRNA	158	2014-10-22
4UKC_K	5_8S_rRNA	158	2014-10-22
4UKL_C	5_8S_rRNA	158	2014-10-22
4UKI_K	5_8S_rRNA	158	2014-10-22
4ULS_K	5_8S_rRNA	158	2014-10-22
3O58_3	5_8S_rRNA	158	2010-12-15
4UL7_K	5_8S_rRNA	158	2014-10-22
4UK7_K	5_8S_rRNA	158	2014-10-22
4UKQ_C	5_8S_rRNA	158	2014-10-22
4UJV_C	5_8S_rRNA	158	2014-10-22
4UKN_K	5_8S_rRNA	158	2014-10-22
4UJI_K	5_8S_rRNA	158	2014-10-22
4UKA_C	5_8S_rRNA	158	2014-10-22
4UJN_K	5_8S_rRNA	158	2014-10-22
4UL0_C	5_8S_rRNA	158	2014-10-22
3J3F_8	5_8S_rRNA	157	2013-05-01
3JYX_4	5_8S_rRNA	157	2009-12-22
4W24_8	5_8S_rRNA	156	2014-09-03
2N1Q_A	HIV-1_DIS	155	2015-05-27
4A1C_2	5_8S_rRNA	154	2011-11-30
3J2C_O	-	144	2013-01-17
3NDB_M	-	136	2011-02-23
4CXG_1	-	135	2014-07-21
3ZEX_H	-	135	2013-02-13
4UYK_R	-	133	2014-11-05
3J2L_3	5S_rRNA	126	2012-11-28
3J3E_8	5_8S_rRNA	123	2013-05-01
3G4S_9	5S_rRNA	122	2009-04-28
4ULQ_B	5S_rRNA	121	2014-10-22
4ULS_J	5S_rRNA	121	2014-10-22
4UKX_J	5S_rRNA	121	2014-10-22
4UK7_J	5S_rRNA	121	2014-10-22
4ULC_J	5S_rRNA	121	2014-10-22
4UL0_B	5S_rRNA	121	2014-10-22
4UKV_B	5S_rRNA	121	2014-10-22
4ULN_J	5S_rRNA	121	2014-10-22
4ULH_J	5S_rRNA	121	2014-10-22
4UK0_B	5S_rRNA	121	2014-10-22
4UKN_J	5S_rRNA	121	2014-10-22
4UK2_J	5S_rRNA	121	2014-10-22
4UKQ_B	5S_rRNA	121	2014-10-22
4UKS_J	5S_rRNA	121	2014-10-22
4UKG_B	5S_rRNA	121	2014-10-22
4UJI_J	5S_rRNA	121	2014-10-22
4UJN_J	5S_rRNA	121	2014-10-22
4UKA_B	5S_rRNA	121	2014-10-22
4UJL_B	5S_rRNA	121	2014-10-22
4ULK_B	5S_rRNA	121	2014-10-22
4UJV_B	5S_rRNA	121	2014-10-22
4UKC_J	5S_rRNA	121	2014-10-22
4UKI_J	5S_rRNA	121	2014-10-22
4UJG_B	5S_rRNA	121	2014-10-22
4ULF_B	5S_rRNA	121	2014-10-22
4UJX_J	5S_rRNA	121	2014-10-22
4UL7_J	5S_rRNA	121	2014-10-22
3O58_2	5S_rRNA	121	2010-12-15
4UJQ_B	-	121	2014-10-22
4UL2_J	5S_rRNA	121	2014-10-22
4UL5_B	5S_rRNA	121	2014-10-22
4UK5_B	5S_rRNA	121	2014-10-22
3J3F_7	5S_rRNA	121	2013-05-01
4UKL_B	5S_rRNA	121	2014-10-22
4W24_7	5S_rRNA	120	2014-09-03
4A1C_3	5S_rRNA	120	2011-11-30
3J3E_7	5S_rRNA	120	2013-05-01
4QK8_A	ydaO-yuaA	120	2014-08-06
3J3V_B	5S_rRNA	119	2013-06-13
3ZEX_D	5S_rRNA	119	2013-02-13
3NPB_A	SAM	119	2010-11-03
1VX6_B	5S_rRNA	118	2014-07-21
3J7Z_B	5S_rRNA	118	2014-10-22
3IZF_C	5S_rRNA	118	2010-12-01
5F9R_A	tracrRNA	115	2016-01-27
4WF9_Y	5S_rRNA	114	2015-10-21
3JYX_3	5S_rRNA	113	2009-12-22
3J0L_2	-	112	2011-11-16
2LKR_A	-	111	2012-02-24
3J0L_h	-	111	2011-11-16
3J46_4	-	109	2013-10-23
4UYJ_R	-	109	2014-11-05
4Y1M_B	-	107	2015-04-08
3JB9_C	U5	105	2015-09-23
4WFL_A	Bacteria_large_SRP	105	2014-10-15
4LCK_F	T-box	102	2013-07-31
2KRL_A	-	102	2011-02-09
2XXA_G	Bacteria_small_SRP	102	2011-03-02
4FRN_A	AdoCbl-variant	102	2012-10-17
4Y1J_A	-	100	2015-04-08
3W3S_B	tRNA-Sec	98	2013-02-13
4OO8_B	-	97	2014-02-26
4OQU_A	SAM-I-IV-variant	97	2014-06-04
4L81_A	SAM-I-IV-variant	96	2014-05-28
2XKV_B	Bacteria_small_SRP	96	2010-12-15
3KTW_C	-	96	2010-02-16
3GX2_A	SAM	94	2010-01-12
4AOB_A	SAM	94	2012-05-09
3IWN_A	c-di-GMP-I	93	2009-11-10
3ADB_C	-	92	2010-07-27
2N7M_X	U4	92	2015-12-30
3W1K_J	tRNA-Sec	92	2013-06-05
3JB9_N	U6	90	2015-09-23
3SD1_A	THF	89	2011-09-21
4BYQ_N	-	87	2013-11-20
3A3A_A	tRNA-Sec	86	2009-08-11
3UZL_B	tRNA	85	2012-03-21
4MGN_C	T-box	85	2013-10-23
2ZZM_B	tRNA	84	2009-09-15
4FRG_B	AdoCbl-variant	84	2012-10-17
4P5J_A	Tymo_tRNA-like	83	2014-06-04
4KZE_R	-	83	2014-06-18
4YAZ_R	c-di-GMP-I	83	2015-04-15
3AM1_B	-	81	2010-12-29
4UN5_A	-	81	2014-07-23
3U4M_B	-	80	2012-08-08
3ZND_W	tRNA	78	2013-04-03
3AMU_B	tRNA	78	2011-10-19
3J5N_W	tRNA	77	2013-12-11
3A2K_C	tRNA	77	2009-10-20
3J20_1	tRNA	77	2012-11-28
2WWQ_V	tRNA	77	2010-04-14
5CCB_N	tRNA	77	2015-11-04
4X0B_B	tRNA	77	2015-04-15
4CXG_Y	tRNA	76	2014-07-21
4WJ4_B	tRNA	76	2014-12-31
3J46_p	tRNA	76	2013-10-23
4W28_6	tRNA	76	2014-09-03
2WRQ_Y	tRNA	76	2009-10-20
3J5B_1	tRNA	76	2013-11-13
4JF2_A	preQ1-II	76	2013-04-17
2XQD_Y	tRNA	76	2010-11-17
3JYV_7	tRNA	76	2009-12-22
3J20_0	tRNA	76	2012-11-28
3J3D_C	tRNA	75	2013-05-01
3WQY_C	tRNA	75	2014-06-18
3J16_L	tRNA	75	2012-02-24
4PLX_A	-	74	2014-06-25
3AKZ_H	tRNA	74	2010-09-28
3J7A_7	tRNA	74	2014-07-21
3WC1_P	tRNA	73	2013-12-19
3ZEX_F	-	73	2013-02-13
4ZNP_A	pfl	73	2015-08-26
4BY9_A	snoPyro_CD	72	2013-10-09
5AXW_B	-	72	2015-09-02
4MGN_D	tRNA	72	2013-10-23
2MF0_G	-	72	2014-05-21
4TZY_X	Purine	71	2014-09-10
4YVJ_C	tRNA	71	2015-07-15
4YVI_C	tRNA	71	2015-07-15
4MGN_B	tRNA	71	2013-10-23
2L3J_B	mir-2985-2	71	2010-10-27
3LA5_A	Purine	71	2010-01-26
2ZZN_D	tRNA	71	2009-09-15
2MS1_B	tRNA	71	2014-09-10
2N8V_X	-	70	2015-11-11
4KR3_C	tRNA	69	2014-05-21
3IVN_B	Purine	69	2010-01-19
2MQT_A	-	68	2014-09-10
3HAY_E	-	68	2009-06-23
4PQV_A	-	68	2014-04-30
4KR2_C	tRNA	68	2014-05-21
2Y9C_V	-	68	2011-05-11
3RKF_A	Purine	67	2011-08-17
2L1F_B	Gammaretro_CES	66	2010-10-27
3R4F_A	-	66	2011-04-20
2L1F_A	Gammaretro_CES	65	2010-10-27
4XW7_A	pfl	64	2015-09-09
3NKB_B	-	64	2010-08-31
3J46_1	-	63	2013-10-23
2WW9_D	-	63	2009-12-08
2N3R_A	-	62	2015-07-15
5DDR_A	glnA	61	2015-12-23
3J45_4	-	61	2013-10-23
4U7U_X	-	61	2014-08-27
4TVX_L	-	60	2014-08-13
4M4O_B	-	59	2013-12-19
2MIY_A	preQ1-II	59	2014-01-29
2M58_A	-	58	2013-04-03
3HJW_D	-	58	2009-06-23
4JRC_A	-	56	2013-04-24
2YIE_Z	-	56	2011-08-31
2LC8_A	GP_knot1	56	2011-11-23
4K27_U	-	55	2013-11-27
2KZL_A	-	55	2011-02-23
4PKD_V	-	54	2014-12-31
2MHI_A	-	53	2013-12-25
2N4L_A	-	53	2015-12-02
2YIE_X	-	53	2011-08-31
4ENC_A	crcB	52	2012-05-09
4ENB_A	crcB	51	2012-05-09
3J0L_7	-	50	2011-11-16
3J0L_1	-	50	2011-11-16
4CXG_2	-	50	2014-07-21
2LU0_A	-	49	2013-04-10
4PJO_4	-	48	2014-12-31
2KUV_A	K10_TLS	48	2010-05-19
2M8K_A	-	48	2013-06-19
2KUU_A	K10_TLS	48	2010-05-19
3J0L_a	-	48	2011-11-16
2KUR_A	K10_TLS	48	2010-05-19
2KUW_A	K10_TLS	48	2010-05-19
4CXG_a	-	48	2014-07-21
2KE6_A	K10_TLS	48	2010-01-26
4C7O_E	-	48	2013-11-20
5DI4_A	Hammerhead_3	48	2015-10-07
4QJD_B	-	47	2014-09-03
4QJH_F	-	47	2014-09-03
2MTJ_A	-	47	2014-10-22
4QJH_D	-	47	2014-09-03
4QJH_B	-	47	2014-09-03
2MTK_A	-	47	2014-10-22
4PJO_2	-	47	2014-12-31
4QJD_H	-	47	2014-09-03
3IAB_R	-	46	2010-01-26
4QJD_D	-	46	2014-09-03
4QJD_F	-	46	2014-09-03
2L94_A	HIV_FE	45	2011-06-15
4RMO_P	-	44	2015-09-30
4M6D_L	-	43	2013-12-11
2L2K_A	-	42	2010-10-27
2KX8_A	7SK	42	2010-09-07
4M6D_D	-	42	2013-12-11
4M6D_F	-	41	2013-12-11
2MXL_A	-	39	2015-05-06
3P22_G	-	39	2010-12-08
4KR7_X	-	39	2014-04-23
2KU0_A	-	38	2010-04-28
4PDB_I	-	38	2014-09-03
2ZY6_A	-	38	2009-06-30
2LHP_A	-	37	2012-07-25
4X4P_B	-	36	2015-02-11
2KFC_A	-	36	2009-03-17
3J46_2	-	36	2013-10-23
3VJR_D	-	36	2012-09-12
2LA5_A	-	36	2011-06-08
5HLF_E	-	35	2016-02-10
4C4W_H	-	35	2014-02-12
2M57_A	-	35	2014-02-26
3R9X_C	-	35	2011-06-22
3OVB_D	-	35	2010-12-01
4FNJ_A	-	35	2012-10-17
2L3E_A	-	35	2010-11-17
5D3G_E	-	34	2015-09-30
2WW9_E	-	34	2009-12-08
3OVS_D	-	34	2010-12-01
4OOG_D	-	34	2014-04-16
2L3C_B	-	34	2010-10-27
2KPV_A	-	34	2010-08-04
3NMU_E	-	34	2011-05-25
3GCA_A	-	33	2009-03-03
4ATO_G	-	33	2012-12-26
3ID5_D	-	32	2009-08-25
2LWK_A	-	32	2012-08-29
2LI4_A	-	32	2012-08-22
2LBS_A	-	32	2011-08-31
5A17_A	-	32	2015-05-06
3J0L_g	-	31	2011-11-16
2LDT_A	-	31	2011-09-06
2N6Q_A	-	31	2015-10-28
2KDQ_B	mir-TAR	29	2009-06-23
3SN2_B	IRE_II	29	2011-11-23
2K5Z_A	-	29	2009-07-14
2K63_A	-	29	2009-07-14
2LUN_A	-	28	2013-12-18
3SIU_F	-	28	2011-08-10
2KMJ_A	-	28	2009-08-18
2LDL_A	-	27	2011-12-28
2LQZ_A	-	27	2012-08-01
2KXM_A	-	27	2011-04-20
2LJJ_A	-	27	2012-09-19
2RP0_A	-	27	2009-03-31
3DW4_A	-	27	2009-03-24
4TUW_C	-	27	2014-07-23
2L5Z_A	-	26	2011-02-16
4TUX_D	-	26	2014-07-21
4BW0_A	-	26	2013-11-06
4HXH_A	-	26	2013-01-30
2KGP_A	-	25	2009-06-02
2WW9_F	-	25	2009-12-08
2KEZ_A	-	24	2009-07-21
5F9F_D	-	24	2016-01-13
2LV0_A	-	24	2013-06-26
3TS2_V	-	24	2011-11-16
2LK3_A	-	24	2012-02-24
2N2O_A	-	23	2015-08-05
2N2P_A	-	23	2015-08-05
2N0R_A	-	23	2015-05-20
2M12_A	-	23	2013-10-23
3TS0_U	-	23	2011-11-16
2MFE_D	-	22	2014-02-26
2MI0_A	-	22	2014-01-15
2MFC_D	-	22	2014-02-26
2K66_A	-	22	2009-07-14
2M5U_A	-	22	2014-04-02
4A4U_A	-	22	2012-05-30
2RRC_A	-	22	2011-06-29
2KD8_A	-	22	2010-01-19
2MFF_B	-	21	2014-02-26
2MFG_B	-	21	2014-02-26
2MI0_B	-	21	2014-01-15
3TRZ_Z	-	21	2011-11-16
5GAP_U	-	20	2016-01-27
3J0L_8	-	20	2011-11-16
2Y8W_B	-	20	2011-05-18
2RPT_A	-	20	2009-08-25

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