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CentroidAlifold(seed) |
|
-
CentroidAlifold(20) vs CentroidAlifold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
CentroidAlifold(seed):
0.730
Sensitivity CentroidAlifold(20):
0.664
CentroidAlifold(seed):
0.575
Positive Predictive Value CentroidAlifold(20):
0.900
CentroidAlifold(seed):
0.930
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
-
PETfold_pre2.0(seed) vs CentroidAlifold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
CentroidAlifold(seed):
0.806
Sensitivity PETfold_pre2.0(seed):
0.802
CentroidAlifold(seed):
0.705
Positive Predictive Value PETfold_pre2.0(seed):
0.863
CentroidAlifold(seed):
0.923
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
+
CentroidAlifold(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.800
RNAalifold(seed):
0.728
Sensitivity CentroidAlifold(seed):
0.709
RNAalifold(seed):
0.607
Positive Predictive Value CentroidAlifold(seed):
0.905
RNAalifold(seed):
0.872
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
=
RNAalifold(20) vs CentroidAlifold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
CentroidAlifold(seed):
0.730
Sensitivity RNAalifold(20):
0.654
CentroidAlifold(seed):
0.575
Positive Predictive Value RNAalifold(20):
0.826
CentroidAlifold(seed):
0.930
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.168852167575
|
+
CentroidAlifold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.784
MXScarna(seed):
0.739
Sensitivity CentroidAlifold(seed):
0.678
MXScarna(seed):
0.698
Positive Predictive Value CentroidAlifold(seed):
0.907
MXScarna(seed):
0.784
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(seed) vs CentroidFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
CentroidFold:
0.687
Sensitivity CentroidAlifold(seed):
0.672
CentroidFold:
0.681
Positive Predictive Value CentroidAlifold(seed):
0.908
CentroidFold:
0.694
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidAlifold(seed) vs PPfold(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.716
PPfold(20):
0.668
Sensitivity CentroidAlifold(seed):
0.541
PPfold(20):
0.614
Positive Predictive Value CentroidAlifold(seed):
0.952
PPfold(20):
0.733
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
+
CentroidAlifold(seed) vs TurboFold(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.716
TurboFold(20):
0.636
Sensitivity CentroidAlifold(seed):
0.541
TurboFold(20):
0.629
Positive Predictive Value CentroidAlifold(seed):
0.952
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
+
CentroidAlifold(seed) vs RNASampler(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
RNASampler(20):
0.692
Sensitivity CentroidAlifold(seed):
0.575
RNASampler(20):
0.621
Positive Predictive Value CentroidAlifold(seed):
0.930
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(seed) vs MXScarna(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
MXScarna(20):
0.678
Sensitivity CentroidAlifold(seed):
0.575
MXScarna(20):
0.640
Positive Predictive Value CentroidAlifold(seed):
0.930
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(seed) vs ContextFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.806
ContextFold:
0.766
Sensitivity CentroidAlifold(seed):
0.705
ContextFold:
0.747
Positive Predictive Value CentroidAlifold(seed):
0.923
ContextFold:
0.785
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
+
CentroidAlifold(seed) vs IPknot
Matthews Correlation Coefficient CentroidAlifold(seed):
0.811
IPknot:
0.700
Sensitivity CentroidAlifold(seed):
0.711
IPknot:
0.683
Positive Predictive Value CentroidAlifold(seed):
0.927
IPknot:
0.718
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
+
CentroidAlifold(seed) vs Contrafold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Contrafold:
0.659
Sensitivity CentroidAlifold(seed):
0.672
Contrafold:
0.678
Positive Predictive Value CentroidAlifold(seed):
0.908
Contrafold:
0.642
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs Carnac(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Carnac(20):
0.641
Sensitivity CentroidAlifold(seed):
0.575
Carnac(20):
0.456
Positive Predictive Value CentroidAlifold(seed):
0.930
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
CentroidAlifold(seed) vs Murlet(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Murlet(20):
0.625
Sensitivity CentroidAlifold(seed):
0.575
Murlet(20):
0.530
Positive Predictive Value CentroidAlifold(seed):
0.930
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.77766983502e-08
|
+
CentroidAlifold(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.668
PETfold_pre2.0(20):
0.622
Sensitivity CentroidAlifold(seed):
0.476
PETfold_pre2.0(20):
0.597
Positive Predictive Value CentroidAlifold(seed):
0.942
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.97952969696e-09
|
+
CentroidAlifold(seed) vs Sfold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Sfold:
0.604
Sensitivity CentroidAlifold(seed):
0.672
Sfold:
0.600
Positive Predictive Value CentroidAlifold(seed):
0.908
Sfold:
0.610
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs Pknots
Matthews Correlation Coefficient CentroidAlifold(seed):
0.760
Pknots:
0.659
Sensitivity CentroidAlifold(seed):
0.609
Pknots:
0.690
Positive Predictive Value CentroidAlifold(seed):
0.953
Pknots:
0.638
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidAlifold(seed) vs MaxExpect
Matthews Correlation Coefficient CentroidAlifold(seed):
0.780
MaxExpect:
0.598
Sensitivity CentroidAlifold(seed):
0.674
MaxExpect:
0.614
Positive Predictive Value CentroidAlifold(seed):
0.904
MaxExpect:
0.584
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(seed) vs TurboFold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.735
TurboFold(seed):
0.610
Sensitivity CentroidAlifold(seed):
0.578
TurboFold(seed):
0.598
Positive Predictive Value CentroidAlifold(seed):
0.940
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
+
CentroidAlifold(seed) vs PknotsRG
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
PknotsRG:
0.610
Sensitivity CentroidAlifold(seed):
0.584
PknotsRG:
0.653
Positive Predictive Value CentroidAlifold(seed):
0.900
PknotsRG:
0.577
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(seed) vs Cylofold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.792
Cylofold:
0.677
Sensitivity CentroidAlifold(seed):
0.656
Cylofold:
0.646
Positive Predictive Value CentroidAlifold(seed):
0.962
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
+
CentroidAlifold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidAlifold(seed):
0.728
CentroidHomfold‑LAST:
0.579
Sensitivity CentroidAlifold(seed):
0.565
CentroidHomfold‑LAST:
0.583
Positive Predictive Value CentroidAlifold(seed):
0.945
CentroidHomfold‑LAST:
0.586
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
+
CentroidAlifold(seed) vs RNASLOpt
Matthews Correlation Coefficient CentroidAlifold(seed):
0.702
RNASLOpt:
0.562
Sensitivity CentroidAlifold(seed):
0.532
RNASLOpt:
0.559
Positive Predictive Value CentroidAlifold(seed):
0.933
RNASLOpt:
0.576
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
+
CentroidAlifold(seed) vs McQFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
McQFold:
0.597
Sensitivity CentroidAlifold(seed):
0.672
McQFold:
0.614
Positive Predictive Value CentroidAlifold(seed):
0.908
McQFold:
0.582
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs ProbKnot
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
ProbKnot:
0.580
Sensitivity CentroidAlifold(seed):
0.679
ProbKnot:
0.608
Positive Predictive Value CentroidAlifold(seed):
0.899
ProbKnot:
0.554
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidAlifold(seed) vs UNAFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
UNAFold:
0.577
Sensitivity CentroidAlifold(seed):
0.672
UNAFold:
0.600
Positive Predictive Value CentroidAlifold(seed):
0.908
UNAFold:
0.556
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs HotKnots
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
HotKnots:
0.575
Sensitivity CentroidAlifold(seed):
0.584
HotKnots:
0.620
Positive Predictive Value CentroidAlifold(seed):
0.900
HotKnots:
0.541
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs RNAshapes
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
RNAshapes:
0.579
Sensitivity CentroidAlifold(seed):
0.584
RNAshapes:
0.606
Positive Predictive Value CentroidAlifold(seed):
0.900
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidAlifold(seed) vs RNAfold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
RNAfold:
0.581
Sensitivity CentroidAlifold(seed):
0.672
RNAfold:
0.609
Positive Predictive Value CentroidAlifold(seed):
0.908
RNAfold:
0.556
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(seed) vs Afold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.670
Afold:
0.539
Sensitivity CentroidAlifold(seed):
0.528
Afold:
0.585
Positive Predictive Value CentroidAlifold(seed):
0.856
Afold:
0.504
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
+
CentroidAlifold(seed) vs RSpredict(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
RSpredict(20):
0.585
Sensitivity CentroidAlifold(seed):
0.575
RSpredict(20):
0.534
Positive Predictive Value CentroidAlifold(seed):
0.930
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
CentroidAlifold(seed) vs Multilign(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.761
Multilign(seed):
0.658
Sensitivity CentroidAlifold(seed):
0.619
Multilign(seed):
0.608
Positive Predictive Value CentroidAlifold(seed):
0.942
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.45186852942e-09
|
+
CentroidAlifold(seed) vs RNAsubopt
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
RNAsubopt:
0.573
Sensitivity CentroidAlifold(seed):
0.584
RNAsubopt:
0.610
Positive Predictive Value CentroidAlifold(seed):
0.900
RNAsubopt:
0.546
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(seed) vs Fold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Fold:
0.540
Sensitivity CentroidAlifold(seed):
0.679
Fold:
0.574
Positive Predictive Value CentroidAlifold(seed):
0.899
Fold:
0.511
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
CentroidAlifold(seed) vs Vsfold4
Matthews Correlation Coefficient CentroidAlifold(seed):
0.720
Vsfold4:
0.542
Sensitivity CentroidAlifold(seed):
0.579
Vsfold4:
0.545
Positive Predictive Value CentroidAlifold(seed):
0.898
Vsfold4:
0.546
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.736
RNASampler(seed):
0.563
Sensitivity CentroidAlifold(seed):
0.584
RNASampler(seed):
0.472
Positive Predictive Value CentroidAlifold(seed):
0.933
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
+
CentroidAlifold(seed) vs Multilign(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.733
Multilign(20):
0.517
Sensitivity CentroidAlifold(seed):
0.565
Multilign(20):
0.530
Positive Predictive Value CentroidAlifold(seed):
0.956
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
+
CentroidAlifold(seed) vs Mastr(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Mastr(20):
0.508
Sensitivity CentroidAlifold(seed):
0.575
Mastr(20):
0.329
Positive Predictive Value CentroidAlifold(seed):
0.930
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(seed) vs Murlet(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.795
Murlet(seed):
0.534
Sensitivity CentroidAlifold(seed):
0.669
Murlet(seed):
0.349
Positive Predictive Value CentroidAlifold(seed):
0.950
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(seed) vs Vsfold5
Matthews Correlation Coefficient CentroidAlifold(seed):
0.723
Vsfold5:
0.514
Sensitivity CentroidAlifold(seed):
0.584
Vsfold5:
0.521
Positive Predictive Value CentroidAlifold(seed):
0.899
Vsfold5:
0.516
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidAlifold(seed) vs Alterna
Matthews Correlation Coefficient CentroidAlifold(seed):
0.772
Alterna:
0.657
Sensitivity CentroidAlifold(seed):
0.618
Alterna:
0.651
Positive Predictive Value CentroidAlifold(seed):
0.974
Alterna:
0.677
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
+
CentroidAlifold(seed) vs RDfolder
Matthews Correlation Coefficient CentroidAlifold(seed):
0.759
RDfolder:
0.594
Sensitivity CentroidAlifold(seed):
0.598
RDfolder:
0.544
Positive Predictive Value CentroidAlifold(seed):
0.974
RDfolder:
0.666
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
+
CentroidAlifold(seed) vs MCFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.741
MCFold:
0.483
Sensitivity CentroidAlifold(seed):
0.579
MCFold:
0.530
Positive Predictive Value CentroidAlifold(seed):
0.954
MCFold:
0.452
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
+
CentroidAlifold(seed) vs RNAwolf
Matthews Correlation Coefficient CentroidAlifold(seed):
0.811
RNAwolf:
0.506
Sensitivity CentroidAlifold(seed):
0.711
RNAwolf:
0.509
Positive Predictive Value CentroidAlifold(seed):
0.927
RNAwolf:
0.504
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
+
CentroidAlifold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
RSpredict(seed):
0.498
Sensitivity CentroidAlifold(seed):
0.672
RSpredict(seed):
0.359
Positive Predictive Value CentroidAlifold(seed):
0.908
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidAlifold(seed) vs Carnac(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.834
Carnac(seed):
0.492
Sensitivity CentroidAlifold(seed):
0.744
Carnac(seed):
0.259
Positive Predictive Value CentroidAlifold(seed):
0.935
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
CentroidAlifold(seed) vs NanoFolder
Matthews Correlation Coefficient CentroidAlifold(seed):
0.677
NanoFolder:
0.340
Sensitivity CentroidAlifold(seed):
0.495
NanoFolder:
0.438
Positive Predictive Value CentroidAlifold(seed):
0.931
NanoFolder:
0.277
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(seed) vs PPfold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.728
PPfold(seed):
0.202
Sensitivity CentroidAlifold(seed):
0.567
PPfold(seed):
0.066
Positive Predictive Value CentroidAlifold(seed):
0.941
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.64481516727e-08
|
?
CentroidAlifold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.862
PETfold_2.0(seed):
0.831
Sensitivity CentroidAlifold(seed):
0.806
PETfold_2.0(seed):
0.806
Positive Predictive Value CentroidAlifold(seed):
0.926
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidAlifold(seed) vs DAFS(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Sensitivity CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(seed) vs CMfinder(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.615
CMfinder(20):
0.580
Sensitivity CentroidAlifold(seed):
0.418
CMfinder(20):
0.500
Positive Predictive Value CentroidAlifold(seed):
0.911
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidAlifold(seed) vs CRWrnafold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.727
CRWrnafold:
0.513
Sensitivity CentroidAlifold(seed):
0.548
CRWrnafold:
0.524
Positive Predictive Value CentroidAlifold(seed):
0.972
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidAlifold(seed) vs DAFS(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Sensitivity CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
CentroidAlifold(seed) vs Mastr(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
Mastr(seed):
0.036
Sensitivity CentroidAlifold(seed):
0.584
Mastr(seed):
0.004
Positive Predictive Value CentroidAlifold(seed):
0.900
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
CentroidAlifold(20) |
21
CentroidAlifold(20) vs CentroidAlifold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
CentroidAlifold(seed):
0.730
Sensitivity CentroidAlifold(20):
0.664
CentroidAlifold(seed):
0.575
Positive Predictive Value CentroidAlifold(20):
0.900
CentroidAlifold(seed):
0.930
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
|
-
PETfold_pre2.0(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
CentroidAlifold(20):
0.672
Sensitivity PETfold_pre2.0(seed):
0.752
CentroidAlifold(20):
0.558
Positive Predictive Value PETfold_pre2.0(seed):
0.861
CentroidAlifold(20):
0.816
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.35199149577e-09
|
+
CentroidAlifold(20) vs RNAalifold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.739
RNAalifold(seed):
0.670
Sensitivity CentroidAlifold(20):
0.617
RNAalifold(seed):
0.487
Positive Predictive Value CentroidAlifold(20):
0.888
RNAalifold(seed):
0.927
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
+
CentroidAlifold(20) vs RNAalifold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAalifold(20):
0.733
Sensitivity CentroidAlifold(20):
0.664
RNAalifold(20):
0.654
Positive Predictive Value CentroidAlifold(20):
0.900
RNAalifold(20):
0.826
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs MXScarna(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.767
MXScarna(seed):
0.707
Sensitivity CentroidAlifold(20):
0.655
MXScarna(seed):
0.646
Positive Predictive Value CentroidAlifold(20):
0.902
MXScarna(seed):
0.779
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidAlifold(20) vs CentroidFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
CentroidFold:
0.667
Sensitivity CentroidAlifold(20):
0.664
CentroidFold:
0.649
Positive Predictive Value CentroidAlifold(20):
0.900
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs PPfold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
PPfold(20):
0.668
Sensitivity CentroidAlifold(20):
0.598
PPfold(20):
0.614
Positive Predictive Value CentroidAlifold(20):
0.852
PPfold(20):
0.733
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.41358941668e-08
|
+
CentroidAlifold(20) vs TurboFold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
TurboFold(20):
0.636
Sensitivity CentroidAlifold(20):
0.598
TurboFold(20):
0.629
Positive Predictive Value CentroidAlifold(20):
0.852
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
+
CentroidAlifold(20) vs RNASampler(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNASampler(20):
0.692
Sensitivity CentroidAlifold(20):
0.664
RNASampler(20):
0.621
Positive Predictive Value CentroidAlifold(20):
0.900
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs MXScarna(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
MXScarna(20):
0.678
Sensitivity CentroidAlifold(20):
0.664
MXScarna(20):
0.640
Positive Predictive Value CentroidAlifold(20):
0.900
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidAlifold(20) vs ContextFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
ContextFold:
0.558
Sensitivity CentroidAlifold(20):
0.558
ContextFold:
0.544
Positive Predictive Value CentroidAlifold(20):
0.816
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
+
CentroidAlifold(20) vs IPknot
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
IPknot:
0.536
Sensitivity CentroidAlifold(20):
0.598
IPknot:
0.525
Positive Predictive Value CentroidAlifold(20):
0.852
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.26497248087e-08
|
+
CentroidAlifold(20) vs Contrafold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Contrafold:
0.608
Sensitivity CentroidAlifold(20):
0.664
Contrafold:
0.621
Positive Predictive Value CentroidAlifold(20):
0.900
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidAlifold(20) vs Carnac(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Carnac(20):
0.641
Sensitivity CentroidAlifold(20):
0.664
Carnac(20):
0.456
Positive Predictive Value CentroidAlifold(20):
0.900
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidAlifold(20) vs Murlet(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Murlet(20):
0.625
Sensitivity CentroidAlifold(20):
0.664
Murlet(20):
0.530
Positive Predictive Value CentroidAlifold(20):
0.900
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
PETfold_pre2.0(20):
0.622
Sensitivity CentroidAlifold(20):
0.558
PETfold_pre2.0(20):
0.597
Positive Predictive Value CentroidAlifold(20):
0.816
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
+
CentroidAlifold(20) vs Sfold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Sfold:
0.609
Sensitivity CentroidAlifold(20):
0.664
Sfold:
0.583
Positive Predictive Value CentroidAlifold(20):
0.900
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.6587683192e-08
|
+
CentroidAlifold(20) vs Pknots
Matthews Correlation Coefficient CentroidAlifold(20):
0.790
Pknots:
0.590
Sensitivity CentroidAlifold(20):
0.693
Pknots:
0.630
Positive Predictive Value CentroidAlifold(20):
0.903
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(20) vs MaxExpect
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
MaxExpect:
0.608
Sensitivity CentroidAlifold(20):
0.664
MaxExpect:
0.611
Positive Predictive Value CentroidAlifold(20):
0.900
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
?
CentroidAlifold(20) vs TurboFold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.646
TurboFold(seed):
0.553
Sensitivity CentroidAlifold(20):
0.513
TurboFold(seed):
0.554
Positive Predictive Value CentroidAlifold(20):
0.820
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs PknotsRG
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
PknotsRG:
0.598
Sensitivity CentroidAlifold(20):
0.664
PknotsRG:
0.633
Positive Predictive Value CentroidAlifold(20):
0.900
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
CentroidAlifold(20) vs Cylofold
Matthews Correlation Coefficient CentroidAlifold(20):
0.845
Cylofold:
0.752
Sensitivity CentroidAlifold(20):
0.747
Cylofold:
0.734
Positive Predictive Value CentroidAlifold(20):
0.961
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidAlifold(20):
0.740
CentroidHomfold‑LAST:
0.572
Sensitivity CentroidAlifold(20):
0.635
CentroidHomfold‑LAST:
0.578
Positive Predictive Value CentroidAlifold(20):
0.869
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
+
CentroidAlifold(20) vs RNASLOpt
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
RNASLOpt:
0.480
Sensitivity CentroidAlifold(20):
0.558
RNASLOpt:
0.500
Positive Predictive Value CentroidAlifold(20):
0.816
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
+
CentroidAlifold(20) vs McQFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
McQFold:
0.613
Sensitivity CentroidAlifold(20):
0.664
McQFold:
0.628
Positive Predictive Value CentroidAlifold(20):
0.900
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(20) vs ProbKnot
Matthews Correlation Coefficient CentroidAlifold(20):
0.730
ProbKnot:
0.562
Sensitivity CentroidAlifold(20):
0.611
ProbKnot:
0.600
Positive Predictive Value CentroidAlifold(20):
0.876
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
+
CentroidAlifold(20) vs UNAFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
UNAFold:
0.581
Sensitivity CentroidAlifold(20):
0.664
UNAFold:
0.602
Positive Predictive Value CentroidAlifold(20):
0.900
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
CentroidAlifold(20) vs HotKnots
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
HotKnots:
0.548
Sensitivity CentroidAlifold(20):
0.664
HotKnots:
0.585
Positive Predictive Value CentroidAlifold(20):
0.900
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(20) vs RNAshapes
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAshapes:
0.576
Sensitivity CentroidAlifold(20):
0.664
RNAshapes:
0.596
Positive Predictive Value CentroidAlifold(20):
0.900
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs RNAfold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAfold:
0.572
Sensitivity CentroidAlifold(20):
0.664
RNAfold:
0.601
Positive Predictive Value CentroidAlifold(20):
0.900
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidAlifold(20) vs Afold
Matthews Correlation Coefficient CentroidAlifold(20):
0.737
Afold:
0.547
Sensitivity CentroidAlifold(20):
0.610
Afold:
0.579
Positive Predictive Value CentroidAlifold(20):
0.894
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
+
CentroidAlifold(20) vs RSpredict(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RSpredict(20):
0.585
Sensitivity CentroidAlifold(20):
0.664
RSpredict(20):
0.534
Positive Predictive Value CentroidAlifold(20):
0.900
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
CentroidAlifold(20) vs Multilign(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.706
Multilign(seed):
0.625
Sensitivity CentroidAlifold(20):
0.571
Multilign(seed):
0.587
Positive Predictive Value CentroidAlifold(20):
0.878
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs RNAsubopt
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAsubopt:
0.564
Sensitivity CentroidAlifold(20):
0.664
RNAsubopt:
0.596
Positive Predictive Value CentroidAlifold(20):
0.900
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs Fold
Matthews Correlation Coefficient CentroidAlifold(20):
0.730
Fold:
0.526
Sensitivity CentroidAlifold(20):
0.611
Fold:
0.562
Positive Predictive Value CentroidAlifold(20):
0.876
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
+
CentroidAlifold(20) vs Vsfold4
Matthews Correlation Coefficient CentroidAlifold(20):
0.786
Vsfold4:
0.537
Sensitivity CentroidAlifold(20):
0.683
Vsfold4:
0.531
Positive Predictive Value CentroidAlifold(20):
0.908
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
CentroidAlifold(20) vs RNASampler(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.622
RNASampler(seed):
0.576
Sensitivity CentroidAlifold(20):
0.497
RNASampler(seed):
0.525
Positive Predictive Value CentroidAlifold(20):
0.783
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs Multilign(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.740
Multilign(20):
0.517
Sensitivity CentroidAlifold(20):
0.635
Multilign(20):
0.530
Positive Predictive Value CentroidAlifold(20):
0.869
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
+
CentroidAlifold(20) vs Mastr(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Mastr(20):
0.508
Sensitivity CentroidAlifold(20):
0.664
Mastr(20):
0.329
Positive Predictive Value CentroidAlifold(20):
0.900
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.81788725234e-08
|
+
CentroidAlifold(20) vs Murlet(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.753
Murlet(seed):
0.564
Sensitivity CentroidAlifold(20):
0.641
Murlet(seed):
0.366
Positive Predictive Value CentroidAlifold(20):
0.890
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
CentroidAlifold(20) vs Vsfold5
Matthews Correlation Coefficient CentroidAlifold(20):
0.786
Vsfold5:
0.493
Sensitivity CentroidAlifold(20):
0.683
Vsfold5:
0.493
Positive Predictive Value CentroidAlifold(20):
0.908
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
CentroidAlifold(20) vs Alterna
Matthews Correlation Coefficient CentroidAlifold(20):
0.900
Alterna:
0.593
Sensitivity CentroidAlifold(20):
0.836
Alterna:
0.596
Positive Predictive Value CentroidAlifold(20):
0.973
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs RDfolder
Matthews Correlation Coefficient CentroidAlifold(20):
0.884
RDfolder:
0.641
Sensitivity CentroidAlifold(20):
0.815
RDfolder:
0.585
Positive Predictive Value CentroidAlifold(20):
0.965
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
+
CentroidAlifold(20) vs MCFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.784
MCFold:
0.453
Sensitivity CentroidAlifold(20):
0.690
MCFold:
0.507
Positive Predictive Value CentroidAlifold(20):
0.895
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.48104284388e-08
|
+
CentroidAlifold(20) vs RNAwolf
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
RNAwolf:
0.396
Sensitivity CentroidAlifold(20):
0.598
RNAwolf:
0.425
Positive Predictive Value CentroidAlifold(20):
0.852
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
+
CentroidAlifold(20) vs RSpredict(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RSpredict(seed):
0.296
Sensitivity CentroidAlifold(20):
0.664
RSpredict(seed):
0.148
Positive Predictive Value CentroidAlifold(20):
0.900
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidAlifold(20) vs Carnac(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.753
Carnac(seed):
0.000
Sensitivity CentroidAlifold(20):
0.641
Carnac(seed):
0.000
Positive Predictive Value CentroidAlifold(20):
0.890
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
CentroidAlifold(20) vs NanoFolder
Matthews Correlation Coefficient CentroidAlifold(20):
0.622
NanoFolder:
0.314
Sensitivity CentroidAlifold(20):
0.513
NanoFolder:
0.427
Positive Predictive Value CentroidAlifold(20):
0.759
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidAlifold(20) vs PPfold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
PPfold(seed):
0.073
Sensitivity CentroidAlifold(20):
0.598
PPfold(seed):
0.019
Positive Predictive Value CentroidAlifold(20):
0.852
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
?
CMfinder(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Sensitivity CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(20) vs DAFS(20)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
DAFS(20):
N/A
Sensitivity CentroidAlifold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidAlifold(20) vs CMfinder(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.711
CMfinder(20):
0.580
Sensitivity CentroidAlifold(20):
0.633
CMfinder(20):
0.500
Positive Predictive Value CentroidAlifold(20):
0.805
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidAlifold(20) vs CRWrnafold
Matthews Correlation Coefficient CentroidAlifold(20):
0.741
CRWrnafold:
0.592
Sensitivity CentroidAlifold(20):
0.611
CRWrnafold:
0.611
Positive Predictive Value CentroidAlifold(20):
0.904
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Sensitivity DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
CentroidAlifold(20) vs Mastr(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Mastr(seed):
0.000
Sensitivity CentroidAlifold(20):
0.664
Mastr(seed):
0.000
Positive Predictive Value CentroidAlifold(20):
0.900
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
PETfold_pre2.0(seed) |
16
PETfold_pre2.0(seed) vs CentroidAlifold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
CentroidAlifold(seed):
0.806
Sensitivity PETfold_pre2.0(seed):
0.802
CentroidAlifold(seed):
0.705
Positive Predictive Value PETfold_pre2.0(seed):
0.863
CentroidAlifold(seed):
0.923
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
10
PETfold_pre2.0(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
CentroidAlifold(20):
0.672
Sensitivity PETfold_pre2.0(seed):
0.752
CentroidAlifold(20):
0.558
Positive Predictive Value PETfold_pre2.0(seed):
0.861
CentroidAlifold(20):
0.816
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.35199149577e-09
|
|
+
PETfold_pre2.0(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.826
RNAalifold(seed):
0.767
Sensitivity PETfold_pre2.0(seed):
0.794
RNAalifold(seed):
0.670
Positive Predictive Value PETfold_pre2.0(seed):
0.860
RNAalifold(seed):
0.878
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
PETfold_pre2.0(seed) vs RNAalifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RNAalifold(20):
0.620
Sensitivity PETfold_pre2.0(seed):
0.752
RNAalifold(20):
0.573
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAalifold(20):
0.678
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
+
PETfold_pre2.0(seed) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.830
MXScarna(seed):
0.728
Sensitivity PETfold_pre2.0(seed):
0.798
MXScarna(seed):
0.688
Positive Predictive Value PETfold_pre2.0(seed):
0.863
MXScarna(seed):
0.772
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
+
PETfold_pre2.0(seed) vs CentroidFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
CentroidFold:
0.676
Sensitivity PETfold_pre2.0(seed):
0.802
CentroidFold:
0.662
Positive Predictive Value PETfold_pre2.0(seed):
0.863
CentroidFold:
0.691
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
PETfold_pre2.0(seed) vs PPfold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
PPfold(20):
0.624
Sensitivity PETfold_pre2.0(seed):
0.752
PPfold(20):
0.573
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PPfold(20):
0.686
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
+
PETfold_pre2.0(seed) vs TurboFold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
TurboFold(20):
0.596
Sensitivity PETfold_pre2.0(seed):
0.752
TurboFold(20):
0.597
Positive Predictive Value PETfold_pre2.0(seed):
0.861
TurboFold(20):
0.603
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.28433927253e-09
|
+
PETfold_pre2.0(seed) vs RNASampler(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RNASampler(20):
0.573
Sensitivity PETfold_pre2.0(seed):
0.752
RNASampler(20):
0.539
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNASampler(20):
0.617
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
+
PETfold_pre2.0(seed) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
MXScarna(20):
0.550
Sensitivity PETfold_pre2.0(seed):
0.752
MXScarna(20):
0.519
Positive Predictive Value PETfold_pre2.0(seed):
0.861
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.10032755566e-08
|
+
PETfold_pre2.0(seed) vs ContextFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
ContextFold:
0.766
Sensitivity PETfold_pre2.0(seed):
0.802
ContextFold:
0.747
Positive Predictive Value PETfold_pre2.0(seed):
0.863
ContextFold:
0.785
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
+
PETfold_pre2.0(seed) vs IPknot
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
IPknot:
0.692
Sensitivity PETfold_pre2.0(seed):
0.802
IPknot:
0.678
Positive Predictive Value PETfold_pre2.0(seed):
0.863
IPknot:
0.707
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.42071836373e-08
|
+
PETfold_pre2.0(seed) vs Contrafold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Contrafold:
0.669
Sensitivity PETfold_pre2.0(seed):
0.802
Contrafold:
0.680
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Contrafold:
0.660
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
+
PETfold_pre2.0(seed) vs Carnac(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Carnac(20):
0.516
Sensitivity PETfold_pre2.0(seed):
0.752
Carnac(20):
0.345
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
+
PETfold_pre2.0(seed) vs Murlet(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Murlet(20):
0.513
Sensitivity PETfold_pre2.0(seed):
0.752
Murlet(20):
0.461
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.40919803867e-08
|
+
PETfold_pre2.0(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
PETfold_pre2.0(20):
0.718
Sensitivity PETfold_pre2.0(seed):
0.751
PETfold_pre2.0(20):
0.682
Positive Predictive Value PETfold_pre2.0(seed):
0.859
PETfold_pre2.0(20):
0.758
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
PETfold_pre2.0(seed) vs Sfold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Sfold:
0.570
Sensitivity PETfold_pre2.0(seed):
0.802
Sfold:
0.565
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Sfold:
0.576
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
+
PETfold_pre2.0(seed) vs Pknots
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
Pknots:
0.577
Sensitivity PETfold_pre2.0(seed):
0.726
Pknots:
0.621
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Pknots:
0.545
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
+
PETfold_pre2.0(seed) vs MaxExpect
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
MaxExpect:
0.575
Sensitivity PETfold_pre2.0(seed):
0.802
MaxExpect:
0.585
Positive Predictive Value PETfold_pre2.0(seed):
0.863
MaxExpect:
0.566
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
PETfold_pre2.0(seed) vs TurboFold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.754
TurboFold(seed):
0.570
Sensitivity PETfold_pre2.0(seed):
0.679
TurboFold(seed):
0.564
Positive Predictive Value PETfold_pre2.0(seed):
0.842
TurboFold(seed):
0.585
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.36849473644e-08
|
+
PETfold_pre2.0(seed) vs PknotsRG
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
PknotsRG:
0.569
Sensitivity PETfold_pre2.0(seed):
0.726
PknotsRG:
0.615
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PknotsRG:
0.536
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
?
PETfold_pre2.0(seed) vs Cylofold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.779
Cylofold:
0.634
Sensitivity PETfold_pre2.0(seed):
0.716
Cylofold:
0.596
Positive Predictive Value PETfold_pre2.0(seed):
0.856
Cylofold:
0.690
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.790
CentroidHomfold‑LAST:
0.543
Sensitivity PETfold_pre2.0(seed):
0.732
CentroidHomfold‑LAST:
0.561
Positive Predictive Value PETfold_pre2.0(seed):
0.858
CentroidHomfold‑LAST:
0.538
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
+
PETfold_pre2.0(seed) vs RNASLOpt
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNASLOpt:
0.562
Sensitivity PETfold_pre2.0(seed):
0.726
RNASLOpt:
0.559
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNASLOpt:
0.576
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
+
PETfold_pre2.0(seed) vs McQFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
McQFold:
0.583
Sensitivity PETfold_pre2.0(seed):
0.802
McQFold:
0.594
Positive Predictive Value PETfold_pre2.0(seed):
0.863
McQFold:
0.572
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
+
PETfold_pre2.0(seed) vs ProbKnot
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
ProbKnot:
0.577
Sensitivity PETfold_pre2.0(seed):
0.802
ProbKnot:
0.593
Positive Predictive Value PETfold_pre2.0(seed):
0.863
ProbKnot:
0.562
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
+
PETfold_pre2.0(seed) vs UNAFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
UNAFold:
0.525
Sensitivity PETfold_pre2.0(seed):
0.802
UNAFold:
0.544
Positive Predictive Value PETfold_pre2.0(seed):
0.863
UNAFold:
0.507
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.40919803867e-08
|
+
PETfold_pre2.0(seed) vs HotKnots
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
HotKnots:
0.517
Sensitivity PETfold_pre2.0(seed):
0.726
HotKnots:
0.565
Positive Predictive Value PETfold_pre2.0(seed):
0.861
HotKnots:
0.485
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
PETfold_pre2.0(seed) vs RNAshapes
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNAshapes:
0.532
Sensitivity PETfold_pre2.0(seed):
0.726
RNAshapes:
0.559
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAshapes:
0.516
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
PETfold_pre2.0(seed) vs RNAfold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
RNAfold:
0.541
Sensitivity PETfold_pre2.0(seed):
0.802
RNAfold:
0.563
Positive Predictive Value PETfold_pre2.0(seed):
0.863
RNAfold:
0.522
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
?
PETfold_pre2.0(seed) vs Afold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.698
Afold:
0.454
Sensitivity PETfold_pre2.0(seed):
0.624
Afold:
0.495
Positive Predictive Value PETfold_pre2.0(seed):
0.788
Afold:
0.427
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs RSpredict(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RSpredict(20):
0.558
Sensitivity PETfold_pre2.0(seed):
0.751
RSpredict(20):
0.511
Positive Predictive Value PETfold_pre2.0(seed):
0.859
RSpredict(20):
0.611
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.10032755566e-08
|
?
PETfold_pre2.0(seed) vs Multilign(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.766
Multilign(seed):
0.628
Sensitivity PETfold_pre2.0(seed):
0.686
Multilign(seed):
0.575
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Multilign(seed):
0.696
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs RNAsubopt
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNAsubopt:
0.523
Sensitivity PETfold_pre2.0(seed):
0.726
RNAsubopt:
0.562
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAsubopt:
0.497
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
+
PETfold_pre2.0(seed) vs Fold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Fold:
0.517
Sensitivity PETfold_pre2.0(seed):
0.802
Fold:
0.544
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Fold:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
+
PETfold_pre2.0(seed) vs Vsfold4
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.786
Vsfold4:
0.538
Sensitivity PETfold_pre2.0(seed):
0.726
Vsfold4:
0.536
Positive Predictive Value PETfold_pre2.0(seed):
0.855
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
?
PETfold_pre2.0(seed) vs RNASampler(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.737
RNASampler(seed):
0.390
Sensitivity PETfold_pre2.0(seed):
0.652
RNASampler(seed):
0.323
Positive Predictive Value PETfold_pre2.0(seed):
0.837
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(seed) vs Multilign(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.818
Multilign(20):
0.441
Sensitivity PETfold_pre2.0(seed):
0.780
Multilign(20):
0.458
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs Mastr(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Mastr(20):
0.467
Sensitivity PETfold_pre2.0(seed):
0.752
Mastr(20):
0.272
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 3.37653953513e-09
|
+
PETfold_pre2.0(seed) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.769
Murlet(seed):
0.473
Sensitivity PETfold_pre2.0(seed):
0.697
Murlet(seed):
0.300
Positive Predictive Value PETfold_pre2.0(seed):
0.853
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
+
PETfold_pre2.0(seed) vs Vsfold5
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.790
Vsfold5:
0.524
Sensitivity PETfold_pre2.0(seed):
0.732
Vsfold5:
0.550
Positive Predictive Value PETfold_pre2.0(seed):
0.858
Vsfold5:
0.510
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
?
Alterna vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient Alterna:
0.471
PETfold_pre2.0(seed):
0.411
Sensitivity Alterna:
0.444
PETfold_pre2.0(seed):
0.333
Positive Predictive Value Alterna:
0.533
PETfold_pre2.0(seed):
0.545
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(seed) vs RDfolder
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.771
RDfolder:
0.456
Sensitivity PETfold_pre2.0(seed):
0.713
RDfolder:
0.420
Positive Predictive Value PETfold_pre2.0(seed):
0.843
RDfolder:
0.516
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs MCFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.772
MCFold:
0.364
Sensitivity PETfold_pre2.0(seed):
0.709
MCFold:
0.417
Positive Predictive Value PETfold_pre2.0(seed):
0.845
MCFold:
0.330
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
+
PETfold_pre2.0(seed) vs RNAwolf
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
RNAwolf:
0.491
Sensitivity PETfold_pre2.0(seed):
0.802
RNAwolf:
0.496
Positive Predictive Value PETfold_pre2.0(seed):
0.863
RNAwolf:
0.488
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
+
PETfold_pre2.0(seed) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.824
RSpredict(seed):
0.590
Sensitivity PETfold_pre2.0(seed):
0.789
RSpredict(seed):
0.482
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RSpredict(seed):
0.723
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.48104284388e-08
|
+
PETfold_pre2.0(seed) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.826
Carnac(seed):
0.577
Sensitivity PETfold_pre2.0(seed):
0.794
Carnac(seed):
0.357
Positive Predictive Value PETfold_pre2.0(seed):
0.860
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
?
PETfold_pre2.0(seed) vs NanoFolder
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.768
NanoFolder:
0.340
Sensitivity PETfold_pre2.0(seed):
0.703
NanoFolder:
0.438
Positive Predictive Value PETfold_pre2.0(seed):
0.844
NanoFolder:
0.277
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(seed) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
PPfold(seed):
0.218
Sensitivity PETfold_pre2.0(seed):
0.726
PPfold(seed):
0.076
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
?
CMfinder(seed) vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.846
PETfold_2.0(seed):
0.831
Sensitivity PETfold_pre2.0(seed):
0.806
PETfold_2.0(seed):
0.806
Positive Predictive Value PETfold_pre2.0(seed):
0.893
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(seed) vs DAFS(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Sensitivity PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(seed) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.869
CMfinder(20):
0.580
Sensitivity PETfold_pre2.0(seed):
0.857
CMfinder(20):
0.500
Positive Predictive Value PETfold_pre2.0(seed):
0.884
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(seed) vs CRWrnafold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.695
CRWrnafold:
0.478
Sensitivity PETfold_pre2.0(seed):
0.619
CRWrnafold:
0.485
Positive Predictive Value PETfold_pre2.0(seed):
0.789
CRWrnafold:
0.485
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
PETfold_pre2.0(seed) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
Mastr(seed):
0.056
Sensitivity PETfold_pre2.0(seed):
0.726
Mastr(seed):
0.009
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.69132796717e-08
|
RNAalifold(seed) |
25
CentroidAlifold(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.800
RNAalifold(seed):
0.728
Sensitivity CentroidAlifold(seed):
0.709
RNAalifold(seed):
0.607
Positive Predictive Value CentroidAlifold(seed):
0.905
RNAalifold(seed):
0.872
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
17
CentroidAlifold(20) vs RNAalifold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.739
RNAalifold(seed):
0.670
Sensitivity CentroidAlifold(20):
0.617
RNAalifold(seed):
0.487
Positive Predictive Value CentroidAlifold(20):
0.888
RNAalifold(seed):
0.927
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
14
PETfold_pre2.0(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.826
RNAalifold(seed):
0.767
Sensitivity PETfold_pre2.0(seed):
0.794
RNAalifold(seed):
0.670
Positive Predictive Value PETfold_pre2.0(seed):
0.860
RNAalifold(seed):
0.878
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
|
-
RNAalifold(20) vs RNAalifold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.695
RNAalifold(seed):
0.670
Sensitivity RNAalifold(20):
0.607
RNAalifold(seed):
0.487
Positive Predictive Value RNAalifold(20):
0.799
RNAalifold(seed):
0.927
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.7553996336e-08
|
+
RNAalifold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.728
MXScarna(seed):
0.724
Sensitivity RNAalifold(seed):
0.607
MXScarna(seed):
0.683
Positive Predictive Value RNAalifold(seed):
0.872
MXScarna(seed):
0.768
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 0.00060722798662
|
+
RNAalifold(seed) vs CentroidFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
CentroidFold:
0.684
Sensitivity RNAalifold(seed):
0.607
CentroidFold:
0.676
Positive Predictive Value RNAalifold(seed):
0.872
CentroidFold:
0.694
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 7.95107997107e-08
|
+
RNAalifold(seed) vs PPfold(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.661
PPfold(20):
0.618
Sensitivity RNAalifold(seed):
0.466
PPfold(20):
0.557
Positive Predictive Value RNAalifold(seed):
0.944
PPfold(20):
0.693
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
+
RNAalifold(seed) vs TurboFold(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.661
TurboFold(20):
0.601
Sensitivity RNAalifold(seed):
0.466
TurboFold(20):
0.589
Positive Predictive Value RNAalifold(seed):
0.944
TurboFold(20):
0.620
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
+
RNAalifold(seed) vs RNASampler(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
RNASampler(20):
0.647
Sensitivity RNAalifold(seed):
0.487
RNASampler(20):
0.569
Positive Predictive Value RNAalifold(seed):
0.927
RNASampler(20):
0.742
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
+
RNAalifold(seed) vs MXScarna(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
MXScarna(20):
0.644
Sensitivity RNAalifold(seed):
0.487
MXScarna(20):
0.603
Positive Predictive Value RNAalifold(seed):
0.927
MXScarna(20):
0.694
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.97012568641e-08
|
+
RNAalifold(seed) vs ContextFold
Matthews Correlation Coefficient RNAalifold(seed):
0.767
ContextFold:
0.759
Sensitivity RNAalifold(seed):
0.670
ContextFold:
0.740
Positive Predictive Value RNAalifold(seed):
0.878
ContextFold:
0.780
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 0.000103482201598
|
+
RNAalifold(seed) vs IPknot
Matthews Correlation Coefficient RNAalifold(seed):
0.764
IPknot:
0.709
Sensitivity RNAalifold(seed):
0.667
IPknot:
0.690
Positive Predictive Value RNAalifold(seed):
0.876
IPknot:
0.729
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 5.81039766894e-08
|
+
RNAalifold(seed) vs Contrafold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
Contrafold:
0.670
Sensitivity RNAalifold(seed):
0.607
Contrafold:
0.687
Positive Predictive Value RNAalifold(seed):
0.872
Contrafold:
0.654
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 6.38150542963e-08
|
+
RNAalifold(seed) vs Carnac(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Carnac(20):
0.609
Sensitivity RNAalifold(seed):
0.487
Carnac(20):
0.403
Positive Predictive Value RNAalifold(seed):
0.927
Carnac(20):
0.926
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
+
RNAalifold(seed) vs Murlet(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Murlet(20):
0.592
Sensitivity RNAalifold(seed):
0.487
Murlet(20):
0.489
Positive Predictive Value RNAalifold(seed):
0.927
Murlet(20):
0.724
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
?
RNAalifold(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.643
PETfold_pre2.0(20):
0.547
Sensitivity RNAalifold(seed):
0.416
PETfold_pre2.0(20):
0.518
Positive Predictive Value RNAalifold(seed):
1.000
PETfold_pre2.0(20):
0.585
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(seed) vs Sfold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
Sfold:
0.614
Sensitivity RNAalifold(seed):
0.607
Sfold:
0.610
Positive Predictive Value RNAalifold(seed):
0.872
Sfold:
0.619
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(seed) vs Pknots
Matthews Correlation Coefficient RNAalifold(seed):
0.695
Pknots:
0.641
Sensitivity RNAalifold(seed):
0.532
Pknots:
0.673
Positive Predictive Value RNAalifold(seed):
0.915
Pknots:
0.620
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(seed) vs MaxExpect
Matthews Correlation Coefficient RNAalifold(seed):
0.726
MaxExpect:
0.605
Sensitivity RNAalifold(seed):
0.607
MaxExpect:
0.621
Positive Predictive Value RNAalifold(seed):
0.869
MaxExpect:
0.592
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
=
RNAalifold(seed) vs TurboFold(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.620
TurboFold(seed):
0.610
Sensitivity RNAalifold(seed):
0.449
TurboFold(seed):
0.598
Positive Predictive Value RNAalifold(seed):
0.864
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00115292248678
|
+
RNAalifold(seed) vs PknotsRG
Matthews Correlation Coefficient RNAalifold(seed):
0.644
PknotsRG:
0.624
Sensitivity RNAalifold(seed):
0.478
PknotsRG:
0.668
Positive Predictive Value RNAalifold(seed):
0.874
PknotsRG:
0.589
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 8.64649098287e-07
|
+
RNAalifold(seed) vs Cylofold
Matthews Correlation Coefficient RNAalifold(seed):
0.701
Cylofold:
0.672
Sensitivity RNAalifold(seed):
0.557
Cylofold:
0.638
Positive Predictive Value RNAalifold(seed):
0.889
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.82148498286e-05
|
+
RNAalifold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNAalifold(seed):
0.644
CentroidHomfold‑LAST:
0.585
Sensitivity RNAalifold(seed):
0.481
CentroidHomfold‑LAST:
0.573
Positive Predictive Value RNAalifold(seed):
0.870
CentroidHomfold‑LAST:
0.606
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
+
RNAalifold(seed) vs RNASLOpt
Matthews Correlation Coefficient RNAalifold(seed):
0.631
RNASLOpt:
0.527
Sensitivity RNAalifold(seed):
0.447
RNASLOpt:
0.520
Positive Predictive Value RNAalifold(seed):
0.899
RNASLOpt:
0.544
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
+
RNAalifold(seed) vs McQFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
McQFold:
0.586
Sensitivity RNAalifold(seed):
0.607
McQFold:
0.603
Positive Predictive Value RNAalifold(seed):
0.872
McQFold:
0.571
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
RNAalifold(seed) vs ProbKnot
Matthews Correlation Coefficient RNAalifold(seed):
0.721
ProbKnot:
0.583
Sensitivity RNAalifold(seed):
0.600
ProbKnot:
0.611
Positive Predictive Value RNAalifold(seed):
0.868
ProbKnot:
0.558
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(seed) vs UNAFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
UNAFold:
0.583
Sensitivity RNAalifold(seed):
0.607
UNAFold:
0.606
Positive Predictive Value RNAalifold(seed):
0.872
UNAFold:
0.562
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(seed) vs HotKnots
Matthews Correlation Coefficient RNAalifold(seed):
0.644
HotKnots:
0.591
Sensitivity RNAalifold(seed):
0.478
HotKnots:
0.639
Positive Predictive Value RNAalifold(seed):
0.874
HotKnots:
0.553
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(seed) vs RNAshapes
Matthews Correlation Coefficient RNAalifold(seed):
0.644
RNAshapes:
0.593
Sensitivity RNAalifold(seed):
0.478
RNAshapes:
0.620
Positive Predictive Value RNAalifold(seed):
0.874
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(seed) vs RNAfold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
RNAfold:
0.592
Sensitivity RNAalifold(seed):
0.607
RNAfold:
0.620
Positive Predictive Value RNAalifold(seed):
0.872
RNAfold:
0.567
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
RNAalifold(seed) vs Afold
Matthews Correlation Coefficient RNAalifold(seed):
0.561
Afold:
0.552
Sensitivity RNAalifold(seed):
0.400
Afold:
0.600
Positive Predictive Value RNAalifold(seed):
0.791
Afold:
0.513
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.32823942078e-06
|
+
RNAalifold(seed) vs RSpredict(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
RSpredict(20):
0.529
Sensitivity RNAalifold(seed):
0.487
RSpredict(20):
0.475
Positive Predictive Value RNAalifold(seed):
0.927
RSpredict(20):
0.597
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.54229534325e-08
|
=
Multilign(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAalifold(seed):
0.641
Sensitivity Multilign(seed):
0.608
RNAalifold(seed):
0.485
Positive Predictive Value Multilign(seed):
0.721
RNAalifold(seed):
0.857
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00176439510334
|
+
RNAalifold(seed) vs RNAsubopt
Matthews Correlation Coefficient RNAalifold(seed):
0.644
RNAsubopt:
0.593
Sensitivity RNAalifold(seed):
0.478
RNAsubopt:
0.630
Positive Predictive Value RNAalifold(seed):
0.874
RNAsubopt:
0.565
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(seed) vs Fold
Matthews Correlation Coefficient RNAalifold(seed):
0.721
Fold:
0.542
Sensitivity RNAalifold(seed):
0.600
Fold:
0.575
Positive Predictive Value RNAalifold(seed):
0.868
Fold:
0.512
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNAalifold(seed) vs Vsfold4
Matthews Correlation Coefficient RNAalifold(seed):
0.637
Vsfold4:
0.519
Sensitivity RNAalifold(seed):
0.473
Vsfold4:
0.522
Positive Predictive Value RNAalifold(seed):
0.863
Vsfold4:
0.523
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
RNAalifold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.594
RNASampler(seed):
0.563
Sensitivity RNAalifold(seed):
0.423
RNASampler(seed):
0.472
Positive Predictive Value RNAalifold(seed):
0.840
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
?
RNAalifold(seed) vs Multilign(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.684
Multilign(20):
0.459
Sensitivity RNAalifold(seed):
0.500
Multilign(20):
0.468
Positive Predictive Value RNAalifold(seed):
0.941
Multilign(20):
0.461
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(seed) vs Mastr(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Mastr(20):
0.412
Sensitivity RNAalifold(seed):
0.487
Mastr(20):
0.234
Positive Predictive Value RNAalifold(seed):
0.927
Mastr(20):
0.731
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.51155234096e-08
|
+
RNAalifold(seed) vs Murlet(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.695
Murlet(seed):
0.534
Sensitivity RNAalifold(seed):
0.532
Murlet(seed):
0.349
Positive Predictive Value RNAalifold(seed):
0.915
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAalifold(seed) vs Vsfold5
Matthews Correlation Coefficient RNAalifold(seed):
0.644
Vsfold5:
0.490
Sensitivity RNAalifold(seed):
0.482
Vsfold5:
0.497
Positive Predictive Value RNAalifold(seed):
0.865
Vsfold5:
0.491
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
Alterna vs RNAalifold(seed)
Matthews Correlation Coefficient Alterna:
0.729
RNAalifold(seed):
0.686
Sensitivity Alterna:
0.701
RNAalifold(seed):
0.593
Positive Predictive Value Alterna:
0.770
RNAalifold(seed):
0.808
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(seed) vs RDfolder
Matthews Correlation Coefficient RNAalifold(seed):
0.699
RDfolder:
0.548
Sensitivity RNAalifold(seed):
0.576
RDfolder:
0.483
Positive Predictive Value RNAalifold(seed):
0.861
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
+
RNAalifold(seed) vs MCFold
Matthews Correlation Coefficient RNAalifold(seed):
0.670
MCFold:
0.471
Sensitivity RNAalifold(seed):
0.509
MCFold:
0.516
Positive Predictive Value RNAalifold(seed):
0.888
MCFold:
0.442
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
+
RNAalifold(seed) vs RNAwolf
Matthews Correlation Coefficient RNAalifold(seed):
0.764
RNAwolf:
0.494
Sensitivity RNAalifold(seed):
0.667
RNAwolf:
0.497
Positive Predictive Value RNAalifold(seed):
0.876
RNAwolf:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
+
RNAalifold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.728
RSpredict(seed):
0.523
Sensitivity RNAalifold(seed):
0.607
RSpredict(seed):
0.388
Positive Predictive Value RNAalifold(seed):
0.872
RSpredict(seed):
0.707
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAalifold(seed) vs Carnac(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.765
Carnac(seed):
0.492
Sensitivity RNAalifold(seed):
0.658
Carnac(seed):
0.259
Positive Predictive Value RNAalifold(seed):
0.891
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
RNAalifold(seed) vs NanoFolder
Matthews Correlation Coefficient RNAalifold(seed):
0.562
NanoFolder:
0.295
Sensitivity RNAalifold(seed):
0.382
NanoFolder:
0.382
Positive Predictive Value RNAalifold(seed):
0.835
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(seed) vs PPfold(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.646
PPfold(seed):
0.214
Sensitivity RNAalifold(seed):
0.473
PPfold(seed):
0.074
Positive Predictive Value RNAalifold(seed):
0.888
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
?
RNAalifold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RNAalifold(seed):
0.780
Sensitivity PETfold_2.0(seed):
0.806
RNAalifold(seed):
0.613
Positive Predictive Value PETfold_2.0(seed):
0.862
RNAalifold(seed):
1.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNAalifold(seed) vs DAFS(20)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
DAFS(20):
N/A
Sensitivity RNAalifold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(seed) vs CMfinder(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.642
CMfinder(20):
0.385
Sensitivity RNAalifold(seed):
0.414
CMfinder(20):
0.310
Positive Predictive Value RNAalifold(seed):
1.000
CMfinder(20):
0.486
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
RNAalifold(seed) vs CRWrnafold
Matthews Correlation Coefficient RNAalifold(seed):
0.582
CRWrnafold:
0.513
Sensitivity RNAalifold(seed):
0.437
CRWrnafold:
0.524
Positive Predictive Value RNAalifold(seed):
0.786
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
RNAalifold(seed) vs DAFS(seed)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
DAFS(seed):
N/A
Sensitivity RNAalifold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAalifold(seed) vs Mastr(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.644
Mastr(seed):
0.039
Sensitivity RNAalifold(seed):
0.478
Mastr(seed):
0.004
Positive Predictive Value RNAalifold(seed):
0.874
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
RNAalifold(20) |
21
RNAalifold(20) vs CentroidAlifold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
CentroidAlifold(seed):
0.730
Sensitivity RNAalifold(20):
0.654
CentroidAlifold(seed):
0.575
Positive Predictive Value RNAalifold(20):
0.826
CentroidAlifold(seed):
0.930
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.168852167575
|
21
CentroidAlifold(20) vs RNAalifold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAalifold(20):
0.733
Sensitivity CentroidAlifold(20):
0.664
RNAalifold(20):
0.654
Positive Predictive Value CentroidAlifold(20):
0.900
RNAalifold(20):
0.826
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
10
PETfold_pre2.0(seed) vs RNAalifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RNAalifold(20):
0.620
Sensitivity PETfold_pre2.0(seed):
0.752
RNAalifold(20):
0.573
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAalifold(20):
0.678
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
17
RNAalifold(20) vs RNAalifold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.695
RNAalifold(seed):
0.670
Sensitivity RNAalifold(20):
0.607
RNAalifold(seed):
0.487
Positive Predictive Value RNAalifold(20):
0.799
RNAalifold(seed):
0.927
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.7553996336e-08
|
|
+
RNAalifold(20) vs MXScarna(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.728
MXScarna(seed):
0.707
Sensitivity RNAalifold(20):
0.646
MXScarna(seed):
0.646
Positive Predictive Value RNAalifold(20):
0.825
MXScarna(seed):
0.779
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNAalifold(20) vs CentroidFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
CentroidFold:
0.667
Sensitivity RNAalifold(20):
0.654
CentroidFold:
0.649
Positive Predictive Value RNAalifold(20):
0.826
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
=
PPfold(20) vs RNAalifold(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RNAalifold(20):
0.664
Sensitivity PPfold(20):
0.614
RNAalifold(20):
0.618
Positive Predictive Value PPfold(20):
0.733
RNAalifold(20):
0.721
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.0813084768916
|
+
RNAalifold(20) vs TurboFold(20)
Matthews Correlation Coefficient RNAalifold(20):
0.664
TurboFold(20):
0.636
Sensitivity RNAalifold(20):
0.618
TurboFold(20):
0.629
Positive Predictive Value RNAalifold(20):
0.721
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
+
RNAalifold(20) vs RNASampler(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNASampler(20):
0.692
Sensitivity RNAalifold(20):
0.654
RNASampler(20):
0.621
Positive Predictive Value RNAalifold(20):
0.826
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNAalifold(20) vs MXScarna(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
MXScarna(20):
0.678
Sensitivity RNAalifold(20):
0.654
MXScarna(20):
0.640
Positive Predictive Value RNAalifold(20):
0.826
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
RNAalifold(20) vs ContextFold
Matthews Correlation Coefficient RNAalifold(20):
0.620
ContextFold:
0.558
Sensitivity RNAalifold(20):
0.573
ContextFold:
0.544
Positive Predictive Value RNAalifold(20):
0.678
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
+
RNAalifold(20) vs IPknot
Matthews Correlation Coefficient RNAalifold(20):
0.664
IPknot:
0.536
Sensitivity RNAalifold(20):
0.618
IPknot:
0.525
Positive Predictive Value RNAalifold(20):
0.721
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
+
RNAalifold(20) vs Contrafold
Matthews Correlation Coefficient RNAalifold(20):
0.733
Contrafold:
0.608
Sensitivity RNAalifold(20):
0.654
Contrafold:
0.621
Positive Predictive Value RNAalifold(20):
0.826
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAalifold(20) vs Carnac(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Carnac(20):
0.641
Sensitivity RNAalifold(20):
0.654
Carnac(20):
0.456
Positive Predictive Value RNAalifold(20):
0.826
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAalifold(20) vs Murlet(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Murlet(20):
0.625
Sensitivity RNAalifold(20):
0.654
Murlet(20):
0.530
Positive Predictive Value RNAalifold(20):
0.826
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
=
PETfold_pre2.0(20) vs RNAalifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAalifold(20):
0.620
Sensitivity PETfold_pre2.0(20):
0.597
RNAalifold(20):
0.573
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAalifold(20):
0.678
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.168792045773
|
+
RNAalifold(20) vs Sfold
Matthews Correlation Coefficient RNAalifold(20):
0.733
Sfold:
0.609
Sensitivity RNAalifold(20):
0.654
Sfold:
0.583
Positive Predictive Value RNAalifold(20):
0.826
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(20) vs Pknots
Matthews Correlation Coefficient RNAalifold(20):
0.748
Pknots:
0.590
Sensitivity RNAalifold(20):
0.687
Pknots:
0.630
Positive Predictive Value RNAalifold(20):
0.821
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(20) vs MaxExpect
Matthews Correlation Coefficient RNAalifold(20):
0.733
MaxExpect:
0.608
Sensitivity RNAalifold(20):
0.654
MaxExpect:
0.611
Positive Predictive Value RNAalifold(20):
0.826
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
RNAalifold(20) vs TurboFold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.589
TurboFold(seed):
0.553
Sensitivity RNAalifold(20):
0.544
TurboFold(seed):
0.554
Positive Predictive Value RNAalifold(20):
0.646
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs PknotsRG
Matthews Correlation Coefficient RNAalifold(20):
0.733
PknotsRG:
0.598
Sensitivity RNAalifold(20):
0.654
PknotsRG:
0.633
Positive Predictive Value RNAalifold(20):
0.826
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
RNAalifold(20) vs Cylofold
Matthews Correlation Coefficient RNAalifold(20):
0.798
Cylofold:
0.752
Sensitivity RNAalifold(20):
0.707
Cylofold:
0.734
Positive Predictive Value RNAalifold(20):
0.905
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNAalifold(20):
0.689
CentroidHomfold‑LAST:
0.572
Sensitivity RNAalifold(20):
0.643
CentroidHomfold‑LAST:
0.578
Positive Predictive Value RNAalifold(20):
0.744
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
+
RNAalifold(20) vs RNASLOpt
Matthews Correlation Coefficient RNAalifold(20):
0.620
RNASLOpt:
0.480
Sensitivity RNAalifold(20):
0.573
RNASLOpt:
0.500
Positive Predictive Value RNAalifold(20):
0.678
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.45096400029e-08
|
+
RNAalifold(20) vs McQFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
McQFold:
0.613
Sensitivity RNAalifold(20):
0.654
McQFold:
0.628
Positive Predictive Value RNAalifold(20):
0.826
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(20) vs ProbKnot
Matthews Correlation Coefficient RNAalifold(20):
0.683
ProbKnot:
0.562
Sensitivity RNAalifold(20):
0.603
ProbKnot:
0.600
Positive Predictive Value RNAalifold(20):
0.779
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
+
RNAalifold(20) vs UNAFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
UNAFold:
0.581
Sensitivity RNAalifold(20):
0.654
UNAFold:
0.602
Positive Predictive Value RNAalifold(20):
0.826
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNAalifold(20) vs HotKnots
Matthews Correlation Coefficient RNAalifold(20):
0.733
HotKnots:
0.548
Sensitivity RNAalifold(20):
0.654
HotKnots:
0.585
Positive Predictive Value RNAalifold(20):
0.826
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNAalifold(20) vs RNAshapes
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAshapes:
0.576
Sensitivity RNAalifold(20):
0.654
RNAshapes:
0.596
Positive Predictive Value RNAalifold(20):
0.826
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
RNAalifold(20) vs RNAfold
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAfold:
0.572
Sensitivity RNAalifold(20):
0.654
RNAfold:
0.601
Positive Predictive Value RNAalifold(20):
0.826
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAalifold(20) vs Afold
Matthews Correlation Coefficient RNAalifold(20):
0.675
Afold:
0.547
Sensitivity RNAalifold(20):
0.575
Afold:
0.579
Positive Predictive Value RNAalifold(20):
0.796
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
+
RNAalifold(20) vs RSpredict(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RSpredict(20):
0.585
Sensitivity RNAalifold(20):
0.654
RSpredict(20):
0.534
Positive Predictive Value RNAalifold(20):
0.826
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
RNAalifold(20) vs Multilign(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.689
Multilign(seed):
0.625
Sensitivity RNAalifold(20):
0.635
Multilign(seed):
0.587
Positive Predictive Value RNAalifold(20):
0.755
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs RNAsubopt
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAsubopt:
0.564
Sensitivity RNAalifold(20):
0.654
RNAsubopt:
0.596
Positive Predictive Value RNAalifold(20):
0.826
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
RNAalifold(20) vs Fold
Matthews Correlation Coefficient RNAalifold(20):
0.683
Fold:
0.526
Sensitivity RNAalifold(20):
0.603
Fold:
0.562
Positive Predictive Value RNAalifold(20):
0.779
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
+
RNAalifold(20) vs Vsfold4
Matthews Correlation Coefficient RNAalifold(20):
0.747
Vsfold4:
0.537
Sensitivity RNAalifold(20):
0.667
Vsfold4:
0.531
Positive Predictive Value RNAalifold(20):
0.842
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
RNAalifold(20) vs RNASampler(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.576
RNASampler(seed):
0.576
Sensitivity RNAalifold(20):
0.558
RNASampler(seed):
0.525
Positive Predictive Value RNAalifold(20):
0.601
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs Multilign(20)
Matthews Correlation Coefficient RNAalifold(20):
0.689
Multilign(20):
0.517
Sensitivity RNAalifold(20):
0.643
Multilign(20):
0.530
Positive Predictive Value RNAalifold(20):
0.744
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.69265863073e-08
|
+
RNAalifold(20) vs Mastr(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Mastr(20):
0.508
Sensitivity RNAalifold(20):
0.654
Mastr(20):
0.329
Positive Predictive Value RNAalifold(20):
0.826
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
RNAalifold(20) vs Murlet(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.705
Murlet(seed):
0.564
Sensitivity RNAalifold(20):
0.636
Murlet(seed):
0.366
Positive Predictive Value RNAalifold(20):
0.788
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.91763127434e-08
|
+
RNAalifold(20) vs Vsfold5
Matthews Correlation Coefficient RNAalifold(20):
0.747
Vsfold5:
0.493
Sensitivity RNAalifold(20):
0.667
Vsfold5:
0.493
Positive Predictive Value RNAalifold(20):
0.842
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
RNAalifold(20) vs Alterna
Matthews Correlation Coefficient RNAalifold(20):
0.891
Alterna:
0.593
Sensitivity RNAalifold(20):
0.836
Alterna:
0.596
Positive Predictive Value RNAalifold(20):
0.953
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs RDfolder
Matthews Correlation Coefficient RNAalifold(20):
0.859
RDfolder:
0.641
Sensitivity RNAalifold(20):
0.781
RDfolder:
0.585
Positive Predictive Value RNAalifold(20):
0.950
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
+
RNAalifold(20) vs MCFold
Matthews Correlation Coefficient RNAalifold(20):
0.743
MCFold:
0.453
Sensitivity RNAalifold(20):
0.695
MCFold:
0.507
Positive Predictive Value RNAalifold(20):
0.800
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
+
RNAalifold(20) vs RNAwolf
Matthews Correlation Coefficient RNAalifold(20):
0.664
RNAwolf:
0.396
Sensitivity RNAalifold(20):
0.618
RNAwolf:
0.425
Positive Predictive Value RNAalifold(20):
0.721
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
+
RNAalifold(20) vs RSpredict(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RSpredict(seed):
0.296
Sensitivity RNAalifold(20):
0.654
RSpredict(seed):
0.148
Positive Predictive Value RNAalifold(20):
0.826
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAalifold(20) vs Carnac(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.705
Carnac(seed):
0.000
Sensitivity RNAalifold(20):
0.636
Carnac(seed):
0.000
Positive Predictive Value RNAalifold(20):
0.788
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
?
RNAalifold(20) vs NanoFolder
Matthews Correlation Coefficient RNAalifold(20):
0.572
NanoFolder:
0.314
Sensitivity RNAalifold(20):
0.556
NanoFolder:
0.427
Positive Predictive Value RNAalifold(20):
0.596
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
RNAalifold(20) vs PPfold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.664
PPfold(seed):
0.073
Sensitivity RNAalifold(20):
0.618
PPfold(seed):
0.019
Positive Predictive Value RNAalifold(20):
0.721
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
?
RNAalifold(20) vs CMfinder(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
CMfinder(seed):
N/A
Sensitivity RNAalifold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(20) vs DAFS(20)
Matthews Correlation Coefficient RNAalifold(20):
N/A
DAFS(20):
N/A
Sensitivity RNAalifold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RNAalifold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAalifold(20) vs CMfinder(20)
Matthews Correlation Coefficient RNAalifold(20):
0.727
CMfinder(20):
0.580
Sensitivity RNAalifold(20):
0.714
CMfinder(20):
0.500
Positive Predictive Value RNAalifold(20):
0.745
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNAalifold(20) vs CRWrnafold
Matthews Correlation Coefficient RNAalifold(20):
0.625
CRWrnafold:
0.592
Sensitivity RNAalifold(20):
0.565
CRWrnafold:
0.611
Positive Predictive Value RNAalifold(20):
0.701
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNAalifold(20) vs DAFS(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
DAFS(seed):
N/A
Sensitivity RNAalifold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAalifold(20) vs Mastr(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Mastr(seed):
0.000
Sensitivity RNAalifold(20):
0.654
Mastr(seed):
0.000
Positive Predictive Value RNAalifold(20):
0.826
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
MXScarna(seed) |
29
CentroidAlifold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.784
MXScarna(seed):
0.739
Sensitivity CentroidAlifold(seed):
0.678
MXScarna(seed):
0.698
Positive Predictive Value CentroidAlifold(seed):
0.907
MXScarna(seed):
0.784
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
CentroidAlifold(20) vs MXScarna(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.767
MXScarna(seed):
0.707
Sensitivity CentroidAlifold(20):
0.655
MXScarna(seed):
0.646
Positive Predictive Value CentroidAlifold(20):
0.902
MXScarna(seed):
0.779
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
15
PETfold_pre2.0(seed) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.830
MXScarna(seed):
0.728
Sensitivity PETfold_pre2.0(seed):
0.798
MXScarna(seed):
0.688
Positive Predictive Value PETfold_pre2.0(seed):
0.863
MXScarna(seed):
0.772
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
25
RNAalifold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.728
MXScarna(seed):
0.724
Sensitivity RNAalifold(seed):
0.607
MXScarna(seed):
0.683
Positive Predictive Value RNAalifold(seed):
0.872
MXScarna(seed):
0.768
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 0.00060722798662
|
20
RNAalifold(20) vs MXScarna(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.728
MXScarna(seed):
0.707
Sensitivity RNAalifold(20):
0.646
MXScarna(seed):
0.646
Positive Predictive Value RNAalifold(20):
0.825
MXScarna(seed):
0.779
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
|
+
MXScarna(seed) vs CentroidFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
CentroidFold:
0.686
Sensitivity MXScarna(seed):
0.698
CentroidFold:
0.680
Positive Predictive Value MXScarna(seed):
0.784
CentroidFold:
0.695
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
-
PPfold(20) vs MXScarna(seed)
Matthews Correlation Coefficient PPfold(20):
0.650
MXScarna(seed):
0.597
Sensitivity PPfold(20):
0.592
MXScarna(seed):
0.538
Positive Predictive Value PPfold(20):
0.721
MXScarna(seed):
0.672
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
-
TurboFold(20) vs MXScarna(seed)
Matthews Correlation Coefficient TurboFold(20):
0.613
MXScarna(seed):
0.597
Sensitivity TurboFold(20):
0.604
MXScarna(seed):
0.538
Positive Predictive Value TurboFold(20):
0.630
MXScarna(seed):
0.672
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.000257373594994
|
+
MXScarna(seed) vs RNASampler(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
RNASampler(20):
0.684
Sensitivity MXScarna(seed):
0.646
RNASampler(20):
0.610
Positive Predictive Value MXScarna(seed):
0.779
RNASampler(20):
0.773
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 8.01557756351e-08
|
+
MXScarna(seed) vs MXScarna(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
MXScarna(20):
0.670
Sensitivity MXScarna(seed):
0.646
MXScarna(20):
0.630
Positive Predictive Value MXScarna(seed):
0.779
MXScarna(20):
0.718
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
-
ContextFold vs MXScarna(seed)
Matthews Correlation Coefficient ContextFold:
0.765
MXScarna(seed):
0.728
Sensitivity ContextFold:
0.746
MXScarna(seed):
0.688
Positive Predictive Value ContextFold:
0.785
MXScarna(seed):
0.772
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.32677072069e-08
|
+
MXScarna(seed) vs IPknot
Matthews Correlation Coefficient MXScarna(seed):
0.732
IPknot:
0.704
Sensitivity MXScarna(seed):
0.692
IPknot:
0.687
Positive Predictive Value MXScarna(seed):
0.776
IPknot:
0.723
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.71184344176e-05
|
+
MXScarna(seed) vs Contrafold
Matthews Correlation Coefficient MXScarna(seed):
0.739
Contrafold:
0.658
Sensitivity MXScarna(seed):
0.698
Contrafold:
0.676
Positive Predictive Value MXScarna(seed):
0.784
Contrafold:
0.641
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MXScarna(seed) vs Carnac(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Carnac(20):
0.631
Sensitivity MXScarna(seed):
0.646
Carnac(20):
0.440
Positive Predictive Value MXScarna(seed):
0.779
Carnac(20):
0.911
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
MXScarna(seed) vs Murlet(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Murlet(20):
0.617
Sensitivity MXScarna(seed):
0.646
Murlet(20):
0.520
Positive Predictive Value MXScarna(seed):
0.779
Murlet(20):
0.739
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
PETfold_pre2.0(20) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.595
MXScarna(seed):
0.539
Sensitivity PETfold_pre2.0(20):
0.567
MXScarna(seed):
0.476
Positive Predictive Value PETfold_pre2.0(20):
0.631
MXScarna(seed):
0.618
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(seed) vs Sfold
Matthews Correlation Coefficient MXScarna(seed):
0.739
Sfold:
0.606
Sensitivity MXScarna(seed):
0.698
Sfold:
0.604
Positive Predictive Value MXScarna(seed):
0.784
Sfold:
0.611
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MXScarna(seed) vs Pknots
Matthews Correlation Coefficient MXScarna(seed):
0.704
Pknots:
0.666
Sensitivity MXScarna(seed):
0.648
Pknots:
0.695
Positive Predictive Value MXScarna(seed):
0.773
Pknots:
0.646
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 6.98181597377e-08
|
+
MXScarna(seed) vs MaxExpect
Matthews Correlation Coefficient MXScarna(seed):
0.732
MaxExpect:
0.600
Sensitivity MXScarna(seed):
0.692
MaxExpect:
0.615
Positive Predictive Value MXScarna(seed):
0.776
MaxExpect:
0.586
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
-
TurboFold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
MXScarna(seed):
0.585
Sensitivity TurboFold(seed):
0.598
MXScarna(seed):
0.527
Positive Predictive Value TurboFold(seed):
0.630
MXScarna(seed):
0.658
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.23753225208e-08
|
+
MXScarna(seed) vs PknotsRG
Matthews Correlation Coefficient MXScarna(seed):
0.687
PknotsRG:
0.610
Sensitivity MXScarna(seed):
0.636
PknotsRG:
0.652
Positive Predictive Value MXScarna(seed):
0.748
PknotsRG:
0.576
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MXScarna(seed) vs Cylofold
Matthews Correlation Coefficient MXScarna(seed):
0.687
Cylofold:
0.677
Sensitivity MXScarna(seed):
0.640
Cylofold:
0.646
Positive Predictive Value MXScarna(seed):
0.746
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.000544433348394
|
+
MXScarna(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient MXScarna(seed):
0.597
CentroidHomfold‑LAST:
0.569
Sensitivity MXScarna(seed):
0.541
CentroidHomfold‑LAST:
0.570
Positive Predictive Value MXScarna(seed):
0.669
CentroidHomfold‑LAST:
0.579
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 5.12463712669e-08
|
+
MXScarna(seed) vs RNASLOpt
Matthews Correlation Coefficient MXScarna(seed):
0.581
RNASLOpt:
0.541
Sensitivity MXScarna(seed):
0.520
RNASLOpt:
0.536
Positive Predictive Value MXScarna(seed):
0.657
RNASLOpt:
0.557
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 3.36290909588e-08
|
+
MXScarna(seed) vs McQFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
McQFold:
0.592
Sensitivity MXScarna(seed):
0.698
McQFold:
0.609
Positive Predictive Value MXScarna(seed):
0.784
McQFold:
0.578
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(seed) vs ProbKnot
Matthews Correlation Coefficient MXScarna(seed):
0.720
ProbKnot:
0.582
Sensitivity MXScarna(seed):
0.682
ProbKnot:
0.610
Positive Predictive Value MXScarna(seed):
0.760
ProbKnot:
0.557
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(seed) vs UNAFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
UNAFold:
0.580
Sensitivity MXScarna(seed):
0.698
UNAFold:
0.604
Positive Predictive Value MXScarna(seed):
0.784
UNAFold:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MXScarna(seed) vs HotKnots
Matthews Correlation Coefficient MXScarna(seed):
0.687
HotKnots:
0.581
Sensitivity MXScarna(seed):
0.636
HotKnots:
0.626
Positive Predictive Value MXScarna(seed):
0.748
HotKnots:
0.546
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
MXScarna(seed) vs RNAshapes
Matthews Correlation Coefficient MXScarna(seed):
0.687
RNAshapes:
0.578
Sensitivity MXScarna(seed):
0.636
RNAshapes:
0.605
Positive Predictive Value MXScarna(seed):
0.748
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MXScarna(seed) vs RNAfold
Matthews Correlation Coefficient MXScarna(seed):
0.739
RNAfold:
0.585
Sensitivity MXScarna(seed):
0.698
RNAfold:
0.613
Positive Predictive Value MXScarna(seed):
0.784
RNAfold:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(seed) vs Afold
Matthews Correlation Coefficient MXScarna(seed):
0.678
Afold:
0.539
Sensitivity MXScarna(seed):
0.619
Afold:
0.585
Positive Predictive Value MXScarna(seed):
0.747
Afold:
0.504
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
MXScarna(seed) vs RSpredict(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
RSpredict(20):
0.576
Sensitivity MXScarna(seed):
0.646
RSpredict(20):
0.523
Positive Predictive Value MXScarna(seed):
0.779
RSpredict(20):
0.642
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
-
Multilign(seed) vs MXScarna(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
MXScarna(seed):
0.631
Sensitivity Multilign(seed):
0.608
MXScarna(seed):
0.577
Positive Predictive Value Multilign(seed):
0.721
MXScarna(seed):
0.701
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.19583565668e-08
|
+
MXScarna(seed) vs RNAsubopt
Matthews Correlation Coefficient MXScarna(seed):
0.687
RNAsubopt:
0.572
Sensitivity MXScarna(seed):
0.636
RNAsubopt:
0.607
Positive Predictive Value MXScarna(seed):
0.748
RNAsubopt:
0.545
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MXScarna(seed) vs Fold
Matthews Correlation Coefficient MXScarna(seed):
0.720
Fold:
0.542
Sensitivity MXScarna(seed):
0.682
Fold:
0.574
Positive Predictive Value MXScarna(seed):
0.760
Fold:
0.512
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(seed) vs Vsfold4
Matthews Correlation Coefficient MXScarna(seed):
0.687
Vsfold4:
0.544
Sensitivity MXScarna(seed):
0.636
Vsfold4:
0.546
Positive Predictive Value MXScarna(seed):
0.747
Vsfold4:
0.549
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MXScarna(seed) vs RNASampler(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.577
RNASampler(seed):
0.563
Sensitivity MXScarna(seed):
0.514
RNASampler(seed):
0.472
Positive Predictive Value MXScarna(seed):
0.656
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.06545072292e-07
|
+
MXScarna(seed) vs Multilign(20)
Matthews Correlation Coefficient MXScarna(seed):
0.623
Multilign(20):
0.481
Sensitivity MXScarna(seed):
0.569
Multilign(20):
0.493
Positive Predictive Value MXScarna(seed):
0.690
Multilign(20):
0.481
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
+
MXScarna(seed) vs Mastr(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Mastr(20):
0.490
Sensitivity MXScarna(seed):
0.646
Mastr(20):
0.308
Positive Predictive Value MXScarna(seed):
0.779
Mastr(20):
0.786
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(seed) vs Murlet(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.668
Murlet(seed):
0.534
Sensitivity MXScarna(seed):
0.611
Murlet(seed):
0.349
Positive Predictive Value MXScarna(seed):
0.738
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(seed) vs Vsfold5
Matthews Correlation Coefficient MXScarna(seed):
0.687
Vsfold5:
0.511
Sensitivity MXScarna(seed):
0.637
Vsfold5:
0.517
Positive Predictive Value MXScarna(seed):
0.746
Vsfold5:
0.513
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
MXScarna(seed) vs Alterna
Matthews Correlation Coefficient MXScarna(seed):
0.789
Alterna:
0.657
Sensitivity MXScarna(seed):
0.726
Alterna:
0.651
Positive Predictive Value MXScarna(seed):
0.866
Alterna:
0.677
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.16590079822e-09
|
+
MXScarna(seed) vs RDfolder
Matthews Correlation Coefficient MXScarna(seed):
0.763
RDfolder:
0.584
Sensitivity MXScarna(seed):
0.701
RDfolder:
0.531
Positive Predictive Value MXScarna(seed):
0.841
RDfolder:
0.660
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
+
MXScarna(seed) vs MCFold
Matthews Correlation Coefficient MXScarna(seed):
0.684
MCFold:
0.480
Sensitivity MXScarna(seed):
0.623
MCFold:
0.526
Positive Predictive Value MXScarna(seed):
0.758
MCFold:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(seed) vs RNAwolf
Matthews Correlation Coefficient MXScarna(seed):
0.732
RNAwolf:
0.495
Sensitivity MXScarna(seed):
0.692
RNAwolf:
0.499
Positive Predictive Value MXScarna(seed):
0.776
RNAwolf:
0.494
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
+
MXScarna(seed) vs RSpredict(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.739
RSpredict(seed):
0.503
Sensitivity MXScarna(seed):
0.698
RSpredict(seed):
0.364
Positive Predictive Value MXScarna(seed):
0.784
RSpredict(seed):
0.698
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MXScarna(seed) vs Carnac(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.741
Carnac(seed):
0.492
Sensitivity MXScarna(seed):
0.698
Carnac(seed):
0.259
Positive Predictive Value MXScarna(seed):
0.787
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
MXScarna(seed) vs NanoFolder
Matthews Correlation Coefficient MXScarna(seed):
0.498
NanoFolder:
0.295
Sensitivity MXScarna(seed):
0.445
NanoFolder:
0.382
Positive Predictive Value MXScarna(seed):
0.566
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(seed) vs PPfold(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.612
PPfold(seed):
0.207
Sensitivity MXScarna(seed):
0.553
PPfold(seed):
0.070
Positive Predictive Value MXScarna(seed):
0.685
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
?
CMfinder(seed) vs MXScarna(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
MXScarna(seed):
N/A
Sensitivity CMfinder(seed):
N/A
MXScarna(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MXScarna(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.917
PETfold_2.0(seed):
0.831
Sensitivity MXScarna(seed):
0.903
PETfold_2.0(seed):
0.806
Positive Predictive Value MXScarna(seed):
0.933
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
MXScarna(seed) vs DAFS(20)
Matthews Correlation Coefficient MXScarna(seed):
N/A
DAFS(20):
N/A
Sensitivity MXScarna(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value MXScarna(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MXScarna(seed) vs CMfinder(20)
Matthews Correlation Coefficient MXScarna(seed):
0.555
CMfinder(20):
0.517
Sensitivity MXScarna(seed):
0.506
CMfinder(20):
0.430
Positive Predictive Value MXScarna(seed):
0.615
CMfinder(20):
0.630
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
?
MXScarna(seed) vs CRWrnafold
Matthews Correlation Coefficient MXScarna(seed):
0.544
CRWrnafold:
0.513
Sensitivity MXScarna(seed):
0.492
CRWrnafold:
0.524
Positive Predictive Value MXScarna(seed):
0.614
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs MXScarna(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
MXScarna(seed):
N/A
Sensitivity DAFS(seed):
N/A
MXScarna(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
MXScarna(seed) vs Mastr(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.687
Mastr(seed):
0.037
Sensitivity MXScarna(seed):
0.636
Mastr(seed):
0.004
Positive Predictive Value MXScarna(seed):
0.748
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
CentroidFold |
30
CentroidAlifold(seed) vs CentroidFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
CentroidFold:
0.687
Sensitivity CentroidAlifold(seed):
0.672
CentroidFold:
0.681
Positive Predictive Value CentroidAlifold(seed):
0.908
CentroidFold:
0.694
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
CentroidAlifold(20) vs CentroidFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
CentroidFold:
0.667
Sensitivity CentroidAlifold(20):
0.664
CentroidFold:
0.649
Positive Predictive Value CentroidAlifold(20):
0.900
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
PETfold_pre2.0(seed) vs CentroidFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
CentroidFold:
0.676
Sensitivity PETfold_pre2.0(seed):
0.802
CentroidFold:
0.662
Positive Predictive Value PETfold_pre2.0(seed):
0.863
CentroidFold:
0.691
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
25
RNAalifold(seed) vs CentroidFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
CentroidFold:
0.684
Sensitivity RNAalifold(seed):
0.607
CentroidFold:
0.676
Positive Predictive Value RNAalifold(seed):
0.872
CentroidFold:
0.694
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 7.95107997107e-08
|
21
RNAalifold(20) vs CentroidFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
CentroidFold:
0.667
Sensitivity RNAalifold(20):
0.654
CentroidFold:
0.649
Positive Predictive Value RNAalifold(20):
0.826
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
29
MXScarna(seed) vs CentroidFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
CentroidFold:
0.686
Sensitivity MXScarna(seed):
0.698
CentroidFold:
0.680
Positive Predictive Value MXScarna(seed):
0.784
CentroidFold:
0.695
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
|
-
PPfold(20) vs CentroidFold
Matthews Correlation Coefficient PPfold(20):
0.668
CentroidFold:
0.568
Sensitivity PPfold(20):
0.614
CentroidFold:
0.564
Positive Predictive Value PPfold(20):
0.733
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
-
TurboFold(20) vs CentroidFold
Matthews Correlation Coefficient TurboFold(20):
0.636
CentroidFold:
0.568
Sensitivity TurboFold(20):
0.629
CentroidFold:
0.564
Positive Predictive Value TurboFold(20):
0.649
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
-
RNASampler(20) vs CentroidFold
Matthews Correlation Coefficient RNASampler(20):
0.692
CentroidFold:
0.667
Sensitivity RNASampler(20):
0.621
CentroidFold:
0.649
Positive Predictive Value RNASampler(20):
0.776
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
-
MXScarna(20) vs CentroidFold
Matthews Correlation Coefficient MXScarna(20):
0.678
CentroidFold:
0.667
Sensitivity MXScarna(20):
0.640
CentroidFold:
0.649
Positive Predictive Value MXScarna(20):
0.724
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.45033651981e-07
|
-
ContextFold vs CentroidFold
Matthews Correlation Coefficient ContextFold:
0.596
CentroidFold:
0.553
Sensitivity ContextFold:
0.588
CentroidFold:
0.527
Positive Predictive Value ContextFold:
0.604
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 9.34100095224e-08
|
-
IPknot vs CentroidFold
Matthews Correlation Coefficient IPknot:
0.600
CentroidFold:
0.564
Sensitivity IPknot:
0.560
CentroidFold:
0.537
Positive Predictive Value IPknot:
0.644
CentroidFold:
0.593
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
CentroidFold vs Contrafold
Matthews Correlation Coefficient CentroidFold:
0.611
Contrafold:
0.587
Sensitivity CentroidFold:
0.600
Contrafold:
0.613
Positive Predictive Value CentroidFold:
0.622
Contrafold:
0.563
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Carnac(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Carnac(20):
0.641
Sensitivity CentroidFold:
0.649
Carnac(20):
0.456
Positive Predictive Value CentroidFold:
0.692
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.03081111858e-07
|
+
CentroidFold vs Murlet(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Murlet(20):
0.625
Sensitivity CentroidFold:
0.649
Murlet(20):
0.530
Positive Predictive Value CentroidFold:
0.692
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
-
PETfold_pre2.0(20) vs CentroidFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
CentroidFold:
0.514
Sensitivity PETfold_pre2.0(20):
0.597
CentroidFold:
0.515
Positive Predictive Value PETfold_pre2.0(20):
0.654
CentroidFold:
0.522
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
+
CentroidFold vs Sfold
Matthews Correlation Coefficient CentroidFold:
0.611
Sfold:
0.527
Sensitivity CentroidFold:
0.600
Sfold:
0.532
Positive Predictive Value CentroidFold:
0.622
Sfold:
0.522
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Pknots
Matthews Correlation Coefficient CentroidFold:
0.734
Pknots:
0.651
Sensitivity CentroidFold:
0.707
Pknots:
0.678
Positive Predictive Value CentroidFold:
0.768
Pknots:
0.634
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidFold vs MaxExpect
Matthews Correlation Coefficient CentroidFold:
0.639
MaxExpect:
0.589
Sensitivity CentroidFold:
0.616
MaxExpect:
0.604
Positive Predictive Value CentroidFold:
0.664
MaxExpect:
0.576
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs TurboFold(seed)
Matthews Correlation Coefficient CentroidFold:
0.629
TurboFold(seed):
0.610
Sensitivity CentroidFold:
0.601
TurboFold(seed):
0.598
Positive Predictive Value CentroidFold:
0.667
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.73552453119e-08
|
+
CentroidFold vs PknotsRG
Matthews Correlation Coefficient CentroidFold:
0.597
PknotsRG:
0.481
Sensitivity CentroidFold:
0.585
PknotsRG:
0.529
Positive Predictive Value CentroidFold:
0.609
PknotsRG:
0.437
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Cylofold
Matthews Correlation Coefficient CentroidFold:
0.742
Cylofold:
0.669
Sensitivity CentroidFold:
0.699
Cylofold:
0.648
Positive Predictive Value CentroidFold:
0.796
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.21671975982e-08
|
+
CentroidFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidFold:
0.624
CentroidHomfold‑LAST:
0.577
Sensitivity CentroidFold:
0.608
CentroidHomfold‑LAST:
0.565
Positive Predictive Value CentroidFold:
0.650
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
+
CentroidFold vs RNASLOpt
Matthews Correlation Coefficient CentroidFold:
0.620
RNASLOpt:
0.558
Sensitivity CentroidFold:
0.597
RNASLOpt:
0.555
Positive Predictive Value CentroidFold:
0.654
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidFold vs McQFold
Matthews Correlation Coefficient CentroidFold:
0.611
McQFold:
0.429
Sensitivity CentroidFold:
0.600
McQFold:
0.403
Positive Predictive Value CentroidFold:
0.622
McQFold:
0.457
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
CentroidFold vs ProbKnot
Matthews Correlation Coefficient CentroidFold:
0.574
ProbKnot:
0.524
Sensitivity CentroidFold:
0.557
ProbKnot:
0.554
Positive Predictive Value CentroidFold:
0.593
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs UNAFold
Matthews Correlation Coefficient CentroidFold:
0.611
UNAFold:
0.498
Sensitivity CentroidFold:
0.600
UNAFold:
0.538
Positive Predictive Value CentroidFold:
0.622
UNAFold:
0.462
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs HotKnots
Matthews Correlation Coefficient CentroidFold:
0.687
HotKnots:
0.589
Sensitivity CentroidFold:
0.678
HotKnots:
0.631
Positive Predictive Value CentroidFold:
0.703
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs RNAshapes
Matthews Correlation Coefficient CentroidFold:
0.687
RNAshapes:
0.587
Sensitivity CentroidFold:
0.678
RNAshapes:
0.609
Positive Predictive Value CentroidFold:
0.703
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs RNAfold
Matthews Correlation Coefficient CentroidFold:
0.611
RNAfold:
0.491
Sensitivity CentroidFold:
0.600
RNAfold:
0.535
Positive Predictive Value CentroidFold:
0.622
RNAfold:
0.451
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Afold
Matthews Correlation Coefficient CentroidFold:
0.574
Afold:
0.459
Sensitivity CentroidFold:
0.565
Afold:
0.510
Positive Predictive Value CentroidFold:
0.583
Afold:
0.414
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
CentroidFold vs RSpredict(20)
Matthews Correlation Coefficient CentroidFold:
0.667
RSpredict(20):
0.585
Sensitivity CentroidFold:
0.649
RSpredict(20):
0.534
Positive Predictive Value CentroidFold:
0.692
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidFold vs Multilign(seed)
Matthews Correlation Coefficient CentroidFold:
0.721
Multilign(seed):
0.658
Sensitivity CentroidFold:
0.662
Multilign(seed):
0.608
Positive Predictive Value CentroidFold:
0.793
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
+
CentroidFold vs RNAsubopt
Matthews Correlation Coefficient CentroidFold:
0.687
RNAsubopt:
0.583
Sensitivity CentroidFold:
0.678
RNAsubopt:
0.615
Positive Predictive Value CentroidFold:
0.703
RNAsubopt:
0.559
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Fold
Matthews Correlation Coefficient CentroidFold:
0.583
Fold:
0.490
Sensitivity CentroidFold:
0.566
Fold:
0.523
Positive Predictive Value CentroidFold:
0.602
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Vsfold4
Matthews Correlation Coefficient CentroidFold:
0.680
Vsfold4:
0.547
Sensitivity CentroidFold:
0.677
Vsfold4:
0.545
Positive Predictive Value CentroidFold:
0.689
Vsfold4:
0.557
Number of pairs reference - predicted secondary structure: 35
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs RNASampler(seed)
Matthews Correlation Coefficient CentroidFold:
0.647
RNASampler(seed):
0.563
Sensitivity CentroidFold:
0.622
RNASampler(seed):
0.472
Positive Predictive Value CentroidFold:
0.679
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.79203144115e-08
|
+
CentroidFold vs Multilign(20)
Matthews Correlation Coefficient CentroidFold:
0.579
Multilign(20):
0.517
Sensitivity CentroidFold:
0.591
Multilign(20):
0.530
Positive Predictive Value CentroidFold:
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
+
CentroidFold vs Mastr(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Mastr(20):
0.508
Sensitivity CentroidFold:
0.649
Mastr(20):
0.329
Positive Predictive Value CentroidFold:
0.692
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidFold vs Murlet(seed)
Matthews Correlation Coefficient CentroidFold:
0.741
Murlet(seed):
0.534
Sensitivity CentroidFold:
0.706
Murlet(seed):
0.349
Positive Predictive Value CentroidFold:
0.783
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
CentroidFold vs Vsfold5
Matthews Correlation Coefficient CentroidFold:
0.683
Vsfold5:
0.517
Sensitivity CentroidFold:
0.678
Vsfold5:
0.522
Positive Predictive Value CentroidFold:
0.694
Vsfold5:
0.520
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Alterna
Matthews Correlation Coefficient CentroidFold:
0.823
Alterna:
0.638
Sensitivity CentroidFold:
0.786
Alterna:
0.633
Positive Predictive Value CentroidFold:
0.870
Alterna:
0.658
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
+
CentroidFold vs RDfolder
Matthews Correlation Coefficient CentroidFold:
0.777
RDfolder:
0.558
Sensitivity CentroidFold:
0.748
RDfolder:
0.502
Positive Predictive Value CentroidFold:
0.817
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
CentroidFold vs MCFold
Matthews Correlation Coefficient CentroidFold:
0.695
MCFold:
0.467
Sensitivity CentroidFold:
0.669
MCFold:
0.512
Positive Predictive Value CentroidFold:
0.730
MCFold:
0.439
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs RNAwolf
Matthews Correlation Coefficient CentroidFold:
0.564
RNAwolf:
0.406
Sensitivity CentroidFold:
0.537
RNAwolf:
0.415
Positive Predictive Value CentroidFold:
0.593
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
CentroidFold vs RSpredict(seed)
Matthews Correlation Coefficient CentroidFold:
0.687
RSpredict(seed):
0.498
Sensitivity CentroidFold:
0.681
RSpredict(seed):
0.359
Positive Predictive Value CentroidFold:
0.694
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
CentroidFold vs Carnac(seed)
Matthews Correlation Coefficient CentroidFold:
0.724
Carnac(seed):
0.492
Sensitivity CentroidFold:
0.701
Carnac(seed):
0.259
Positive Predictive Value CentroidFold:
0.748
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
CentroidFold vs NanoFolder
Matthews Correlation Coefficient CentroidFold:
0.564
NanoFolder:
0.406
Sensitivity CentroidFold:
0.560
NanoFolder:
0.516
Positive Predictive Value CentroidFold:
0.579
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
+
CentroidFold vs PPfold(seed)
Matthews Correlation Coefficient CentroidFold:
0.663
PPfold(seed):
0.202
Sensitivity CentroidFold:
0.641
PPfold(seed):
0.066
Positive Predictive Value CentroidFold:
0.694
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
CMfinder(seed) vs CentroidFold
Matthews Correlation Coefficient CMfinder(seed):
N/A
CentroidFold:
N/A
Sensitivity CMfinder(seed):
N/A
CentroidFold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
CentroidFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidFold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity CentroidFold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value CentroidFold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidFold vs DAFS(20)
Matthews Correlation Coefficient CentroidFold:
N/A
DAFS(20):
N/A
Sensitivity CentroidFold:
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidFold vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs CentroidFold
Matthews Correlation Coefficient CMfinder(20):
0.580
CentroidFold:
0.516
Sensitivity CMfinder(20):
0.500
CentroidFold:
0.561
Positive Predictive Value CMfinder(20):
0.681
CentroidFold:
0.482
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidFold vs CRWrnafold
Matthews Correlation Coefficient CentroidFold:
0.591
CRWrnafold:
0.502
Sensitivity CentroidFold:
0.560
CRWrnafold:
0.516
Positive Predictive Value CentroidFold:
0.636
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs CentroidFold
Matthews Correlation Coefficient DAFS(seed):
N/A
CentroidFold:
N/A
Sensitivity DAFS(seed):
N/A
CentroidFold:
N/A
Positive Predictive Value DAFS(seed):
N/A
CentroidFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
CentroidFold vs Mastr(seed)
Matthews Correlation Coefficient CentroidFold:
0.679
Mastr(seed):
0.036
Sensitivity CentroidFold:
0.675
Mastr(seed):
0.004
Positive Predictive Value CentroidFold:
0.689
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
PPfold(20) |
12
CentroidAlifold(seed) vs PPfold(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.716
PPfold(20):
0.668
Sensitivity CentroidAlifold(seed):
0.541
PPfold(20):
0.614
Positive Predictive Value CentroidAlifold(seed):
0.952
PPfold(20):
0.733
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
12
CentroidAlifold(20) vs PPfold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
PPfold(20):
0.668
Sensitivity CentroidAlifold(20):
0.598
PPfold(20):
0.614
Positive Predictive Value CentroidAlifold(20):
0.852
PPfold(20):
0.733
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.41358941668e-08
|
10
PETfold_pre2.0(seed) vs PPfold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
PPfold(20):
0.624
Sensitivity PETfold_pre2.0(seed):
0.752
PPfold(20):
0.573
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PPfold(20):
0.686
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
10
RNAalifold(seed) vs PPfold(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.661
PPfold(20):
0.618
Sensitivity RNAalifold(seed):
0.466
PPfold(20):
0.557
Positive Predictive Value RNAalifold(seed):
0.944
PPfold(20):
0.693
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
12
PPfold(20) vs RNAalifold(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RNAalifold(20):
0.664
Sensitivity PPfold(20):
0.614
RNAalifold(20):
0.618
Positive Predictive Value PPfold(20):
0.733
RNAalifold(20):
0.721
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.0813084768916
|
11
PPfold(20) vs MXScarna(seed)
Matthews Correlation Coefficient PPfold(20):
0.650
MXScarna(seed):
0.597
Sensitivity PPfold(20):
0.592
MXScarna(seed):
0.538
Positive Predictive Value PPfold(20):
0.721
MXScarna(seed):
0.672
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
12
PPfold(20) vs CentroidFold
Matthews Correlation Coefficient PPfold(20):
0.668
CentroidFold:
0.568
Sensitivity PPfold(20):
0.614
CentroidFold:
0.564
Positive Predictive Value PPfold(20):
0.733
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
|
+
PPfold(20) vs TurboFold(20)
Matthews Correlation Coefficient PPfold(20):
0.668
TurboFold(20):
0.636
Sensitivity PPfold(20):
0.614
TurboFold(20):
0.629
Positive Predictive Value PPfold(20):
0.733
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
+
PPfold(20) vs RNASampler(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RNASampler(20):
0.628
Sensitivity PPfold(20):
0.614
RNASampler(20):
0.583
Positive Predictive Value PPfold(20):
0.733
RNASampler(20):
0.683
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
+
PPfold(20) vs MXScarna(20)
Matthews Correlation Coefficient PPfold(20):
0.668
MXScarna(20):
0.600
Sensitivity PPfold(20):
0.614
MXScarna(20):
0.568
Positive Predictive Value PPfold(20):
0.733
MXScarna(20):
0.642
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
+
PPfold(20) vs ContextFold
Matthews Correlation Coefficient PPfold(20):
0.624
ContextFold:
0.558
Sensitivity PPfold(20):
0.573
ContextFold:
0.544
Positive Predictive Value PPfold(20):
0.686
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
+
PPfold(20) vs IPknot
Matthews Correlation Coefficient PPfold(20):
0.668
IPknot:
0.536
Sensitivity PPfold(20):
0.614
IPknot:
0.525
Positive Predictive Value PPfold(20):
0.733
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.11142658008e-08
|
+
PPfold(20) vs Contrafold
Matthews Correlation Coefficient PPfold(20):
0.668
Contrafold:
0.545
Sensitivity PPfold(20):
0.614
Contrafold:
0.568
Positive Predictive Value PPfold(20):
0.733
Contrafold:
0.533
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.32677072069e-08
|
+
PPfold(20) vs Carnac(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Carnac(20):
0.585
Sensitivity PPfold(20):
0.614
Carnac(20):
0.413
Positive Predictive Value PPfold(20):
0.733
Carnac(20):
0.836
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
+
PPfold(20) vs Murlet(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Murlet(20):
0.576
Sensitivity PPfold(20):
0.614
Murlet(20):
0.521
Positive Predictive Value PPfold(20):
0.733
Murlet(20):
0.646
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
=
PPfold(20) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient PPfold(20):
0.624
PETfold_pre2.0(20):
0.622
Sensitivity PPfold(20):
0.573
PETfold_pre2.0(20):
0.597
Positive Predictive Value PPfold(20):
0.686
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.165436734584
|
+
PPfold(20) vs Sfold
Matthews Correlation Coefficient PPfold(20):
0.668
Sfold:
0.527
Sensitivity PPfold(20):
0.614
Sfold:
0.514
Positive Predictive Value PPfold(20):
0.733
Sfold:
0.550
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
+
PPfold(20) vs Pknots
Matthews Correlation Coefficient PPfold(20):
0.668
Pknots:
0.511
Sensitivity PPfold(20):
0.614
Pknots:
0.560
Positive Predictive Value PPfold(20):
0.733
Pknots:
0.477
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
+
PPfold(20) vs MaxExpect
Matthews Correlation Coefficient PPfold(20):
0.668
MaxExpect:
0.487
Sensitivity PPfold(20):
0.614
MaxExpect:
0.498
Positive Predictive Value PPfold(20):
0.733
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
?
PPfold(20) vs TurboFold(seed)
Matthews Correlation Coefficient PPfold(20):
0.591
TurboFold(seed):
0.553
Sensitivity PPfold(20):
0.533
TurboFold(seed):
0.554
Positive Predictive Value PPfold(20):
0.662
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs PknotsRG
Matthews Correlation Coefficient PPfold(20):
0.668
PknotsRG:
0.526
Sensitivity PPfold(20):
0.614
PknotsRG:
0.579
Positive Predictive Value PPfold(20):
0.733
PknotsRG:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
?
PPfold(20) vs Cylofold
Matthews Correlation Coefficient PPfold(20):
0.826
Cylofold:
0.780
Sensitivity PPfold(20):
0.752
Cylofold:
0.752
Positive Predictive Value PPfold(20):
0.915
Cylofold:
0.819
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PPfold(20):
0.700
CentroidHomfold‑LAST:
0.572
Sensitivity PPfold(20):
0.652
CentroidHomfold‑LAST:
0.578
Positive Predictive Value PPfold(20):
0.758
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
+
PPfold(20) vs RNASLOpt
Matthews Correlation Coefficient PPfold(20):
0.624
RNASLOpt:
0.480
Sensitivity PPfold(20):
0.573
RNASLOpt:
0.500
Positive Predictive Value PPfold(20):
0.686
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.55268413083e-08
|
+
PPfold(20) vs McQFold
Matthews Correlation Coefficient PPfold(20):
0.668
McQFold:
0.599
Sensitivity PPfold(20):
0.614
McQFold:
0.641
Positive Predictive Value PPfold(20):
0.733
McQFold:
0.568
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
+
PPfold(20) vs ProbKnot
Matthews Correlation Coefficient PPfold(20):
0.668
ProbKnot:
0.483
Sensitivity PPfold(20):
0.614
ProbKnot:
0.525
Positive Predictive Value PPfold(20):
0.733
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.50323628132e-08
|
+
PPfold(20) vs UNAFold
Matthews Correlation Coefficient PPfold(20):
0.668
UNAFold:
0.461
Sensitivity PPfold(20):
0.614
UNAFold:
0.498
Positive Predictive Value PPfold(20):
0.733
UNAFold:
0.437
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
+
PPfold(20) vs HotKnots
Matthews Correlation Coefficient PPfold(20):
0.668
HotKnots:
0.463
Sensitivity PPfold(20):
0.614
HotKnots:
0.514
Positive Predictive Value PPfold(20):
0.733
HotKnots:
0.429
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
+
PPfold(20) vs RNAshapes
Matthews Correlation Coefficient PPfold(20):
0.668
RNAshapes:
0.491
Sensitivity PPfold(20):
0.614
RNAshapes:
0.529
Positive Predictive Value PPfold(20):
0.733
RNAshapes:
0.466
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
+
PPfold(20) vs RNAfold
Matthews Correlation Coefficient PPfold(20):
0.668
RNAfold:
0.468
Sensitivity PPfold(20):
0.614
RNAfold:
0.506
Positive Predictive Value PPfold(20):
0.733
RNAfold:
0.444
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 5.64212886735e-09
|
?
PPfold(20) vs Afold
Matthews Correlation Coefficient PPfold(20):
0.515
Afold:
0.501
Sensitivity PPfold(20):
0.459
Afold:
0.554
Positive Predictive Value PPfold(20):
0.586
Afold:
0.461
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs RSpredict(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RSpredict(20):
0.515
Sensitivity PPfold(20):
0.614
RSpredict(20):
0.486
Positive Predictive Value PPfold(20):
0.733
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
?
PPfold(20) vs Multilign(seed)
Matthews Correlation Coefficient PPfold(20):
0.673
Multilign(seed):
0.625
Sensitivity PPfold(20):
0.611
Multilign(seed):
0.587
Positive Predictive Value PPfold(20):
0.748
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs RNAsubopt
Matthews Correlation Coefficient PPfold(20):
0.668
RNAsubopt:
0.489
Sensitivity PPfold(20):
0.614
RNAsubopt:
0.537
Positive Predictive Value PPfold(20):
0.733
RNAsubopt:
0.456
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
+
PPfold(20) vs Fold
Matthews Correlation Coefficient PPfold(20):
0.668
Fold:
0.414
Sensitivity PPfold(20):
0.614
Fold:
0.456
Positive Predictive Value PPfold(20):
0.733
Fold:
0.388
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
+
PPfold(20) vs Vsfold4
Matthews Correlation Coefficient PPfold(20):
0.700
Vsfold4:
0.526
Sensitivity PPfold(20):
0.652
Vsfold4:
0.535
Positive Predictive Value PPfold(20):
0.758
Vsfold4:
0.528
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
?
RNASampler(seed) vs PPfold(20)
Matthews Correlation Coefficient RNASampler(seed):
0.526
PPfold(20):
0.521
Sensitivity RNASampler(seed):
0.478
PPfold(20):
0.478
Positive Predictive Value RNASampler(seed):
0.586
PPfold(20):
0.575
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs Multilign(20)
Matthews Correlation Coefficient PPfold(20):
0.700
Multilign(20):
0.517
Sensitivity PPfold(20):
0.652
Multilign(20):
0.530
Positive Predictive Value PPfold(20):
0.758
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
+
PPfold(20) vs Mastr(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Mastr(20):
0.544
Sensitivity PPfold(20):
0.614
Mastr(20):
0.363
Positive Predictive Value PPfold(20):
0.733
Mastr(20):
0.825
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
+
PPfold(20) vs Murlet(seed)
Matthews Correlation Coefficient PPfold(20):
0.618
Murlet(seed):
0.535
Sensitivity PPfold(20):
0.557
Murlet(seed):
0.342
Positive Predictive Value PPfold(20):
0.693
Murlet(seed):
0.843
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
+
PPfold(20) vs Vsfold5
Matthews Correlation Coefficient PPfold(20):
0.700
Vsfold5:
0.504
Sensitivity PPfold(20):
0.652
Vsfold5:
0.539
Positive Predictive Value PPfold(20):
0.758
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
?
PPfold(20) vs Alterna
Matthews Correlation Coefficient PPfold(20):
0.836
Alterna:
0.673
Sensitivity PPfold(20):
0.774
Alterna:
0.660
Positive Predictive Value PPfold(20):
0.911
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
PPfold(20) vs RDfolder
Matthews Correlation Coefficient PPfold(20):
0.829
RDfolder:
0.608
Sensitivity PPfold(20):
0.770
RDfolder:
0.533
Positive Predictive Value PPfold(20):
0.900
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs MCFold
Matthews Correlation Coefficient PPfold(20):
0.641
MCFold:
0.409
Sensitivity PPfold(20):
0.587
MCFold:
0.470
Positive Predictive Value PPfold(20):
0.707
MCFold:
0.367
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
+
PPfold(20) vs RNAwolf
Matthews Correlation Coefficient PPfold(20):
0.668
RNAwolf:
0.396
Sensitivity PPfold(20):
0.614
RNAwolf:
0.425
Positive Predictive Value PPfold(20):
0.733
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
+
PPfold(20) vs RSpredict(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
RSpredict(seed):
0.261
Sensitivity PPfold(20):
0.614
RSpredict(seed):
0.131
Positive Predictive Value PPfold(20):
0.733
RSpredict(seed):
0.531
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
+
PPfold(20) vs Carnac(seed)
Matthews Correlation Coefficient PPfold(20):
0.618
Carnac(seed):
0.000
Sensitivity PPfold(20):
0.557
Carnac(seed):
0.000
Positive Predictive Value PPfold(20):
0.693
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
?
PPfold(20) vs NanoFolder
Matthews Correlation Coefficient PPfold(20):
0.574
NanoFolder:
0.314
Sensitivity PPfold(20):
0.547
NanoFolder:
0.427
Positive Predictive Value PPfold(20):
0.610
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
PPfold(20) vs PPfold(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
PPfold(seed):
0.073
Sensitivity PPfold(20):
0.614
PPfold(seed):
0.019
Positive Predictive Value PPfold(20):
0.733
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
?
PPfold(20) vs CMfinder(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
CMfinder(seed):
N/A
Sensitivity PPfold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PPfold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PPfold(20) vs DAFS(20)
Matthews Correlation Coefficient PPfold(20):
N/A
DAFS(20):
N/A
Sensitivity PPfold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PPfold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PPfold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient PPfold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity PPfold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PPfold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PPfold(20) vs CMfinder(20)
Matthews Correlation Coefficient PPfold(20):
0.682
CMfinder(20):
0.580
Sensitivity PPfold(20):
0.663
CMfinder(20):
0.500
Positive Predictive Value PPfold(20):
0.707
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PPfold(20) vs CRWrnafold
Matthews Correlation Coefficient PPfold(20):
0.681
CRWrnafold:
0.592
Sensitivity PPfold(20):
0.611
CRWrnafold:
0.611
Positive Predictive Value PPfold(20):
0.767
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PPfold(20) vs DAFS(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
DAFS(seed):
N/A
Sensitivity PPfold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
PPfold(20) vs Mastr(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
Mastr(seed):
0.000
Sensitivity PPfold(20):
0.614
Mastr(seed):
0.000
Positive Predictive Value PPfold(20):
0.733
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
TurboFold(20) |
12
CentroidAlifold(seed) vs TurboFold(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.716
TurboFold(20):
0.636
Sensitivity CentroidAlifold(seed):
0.541
TurboFold(20):
0.629
Positive Predictive Value CentroidAlifold(seed):
0.952
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
12
CentroidAlifold(20) vs TurboFold(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
TurboFold(20):
0.636
Sensitivity CentroidAlifold(20):
0.598
TurboFold(20):
0.629
Positive Predictive Value CentroidAlifold(20):
0.852
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
10
PETfold_pre2.0(seed) vs TurboFold(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
TurboFold(20):
0.596
Sensitivity PETfold_pre2.0(seed):
0.752
TurboFold(20):
0.597
Positive Predictive Value PETfold_pre2.0(seed):
0.861
TurboFold(20):
0.603
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.28433927253e-09
|
10
RNAalifold(seed) vs TurboFold(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.661
TurboFold(20):
0.601
Sensitivity RNAalifold(seed):
0.466
TurboFold(20):
0.589
Positive Predictive Value RNAalifold(seed):
0.944
TurboFold(20):
0.620
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
12
RNAalifold(20) vs TurboFold(20)
Matthews Correlation Coefficient RNAalifold(20):
0.664
TurboFold(20):
0.636
Sensitivity RNAalifold(20):
0.618
TurboFold(20):
0.629
Positive Predictive Value RNAalifold(20):
0.721
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
11
TurboFold(20) vs MXScarna(seed)
Matthews Correlation Coefficient TurboFold(20):
0.613
MXScarna(seed):
0.597
Sensitivity TurboFold(20):
0.604
MXScarna(seed):
0.538
Positive Predictive Value TurboFold(20):
0.630
MXScarna(seed):
0.672
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.000257373594994
|
12
TurboFold(20) vs CentroidFold
Matthews Correlation Coefficient TurboFold(20):
0.636
CentroidFold:
0.568
Sensitivity TurboFold(20):
0.629
CentroidFold:
0.564
Positive Predictive Value TurboFold(20):
0.649
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.04409141234e-08
|
12
PPfold(20) vs TurboFold(20)
Matthews Correlation Coefficient PPfold(20):
0.668
TurboFold(20):
0.636
Sensitivity PPfold(20):
0.614
TurboFold(20):
0.629
Positive Predictive Value PPfold(20):
0.733
TurboFold(20):
0.649
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
|
+
TurboFold(20) vs RNASampler(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
RNASampler(20):
0.628
Sensitivity TurboFold(20):
0.629
RNASampler(20):
0.583
Positive Predictive Value TurboFold(20):
0.649
RNASampler(20):
0.683
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.23172650901e-05
|
+
TurboFold(20) vs MXScarna(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
MXScarna(20):
0.600
Sensitivity TurboFold(20):
0.629
MXScarna(20):
0.568
Positive Predictive Value TurboFold(20):
0.649
MXScarna(20):
0.642
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.36849473644e-08
|
+
TurboFold(20) vs ContextFold
Matthews Correlation Coefficient TurboFold(20):
0.596
ContextFold:
0.558
Sensitivity TurboFold(20):
0.597
ContextFold:
0.544
Positive Predictive Value TurboFold(20):
0.603
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
+
TurboFold(20) vs IPknot
Matthews Correlation Coefficient TurboFold(20):
0.636
IPknot:
0.536
Sensitivity TurboFold(20):
0.629
IPknot:
0.525
Positive Predictive Value TurboFold(20):
0.649
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
+
TurboFold(20) vs Contrafold
Matthews Correlation Coefficient TurboFold(20):
0.636
Contrafold:
0.545
Sensitivity TurboFold(20):
0.629
Contrafold:
0.568
Positive Predictive Value TurboFold(20):
0.649
Contrafold:
0.533
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
+
TurboFold(20) vs Carnac(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Carnac(20):
0.585
Sensitivity TurboFold(20):
0.629
Carnac(20):
0.413
Positive Predictive Value TurboFold(20):
0.649
Carnac(20):
0.836
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
+
TurboFold(20) vs Murlet(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Murlet(20):
0.576
Sensitivity TurboFold(20):
0.629
Murlet(20):
0.521
Positive Predictive Value TurboFold(20):
0.649
Murlet(20):
0.646
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.53980171438e-08
|
-
PETfold_pre2.0(20) vs TurboFold(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
TurboFold(20):
0.596
Sensitivity PETfold_pre2.0(20):
0.597
TurboFold(20):
0.597
Positive Predictive Value PETfold_pre2.0(20):
0.654
TurboFold(20):
0.603
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.69708324004e-07
|
+
TurboFold(20) vs Sfold
Matthews Correlation Coefficient TurboFold(20):
0.636
Sfold:
0.527
Sensitivity TurboFold(20):
0.629
Sfold:
0.514
Positive Predictive Value TurboFold(20):
0.649
Sfold:
0.550
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
+
TurboFold(20) vs Pknots
Matthews Correlation Coefficient TurboFold(20):
0.636
Pknots:
0.511
Sensitivity TurboFold(20):
0.629
Pknots:
0.560
Positive Predictive Value TurboFold(20):
0.649
Pknots:
0.477
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
TurboFold(20) vs MaxExpect
Matthews Correlation Coefficient TurboFold(20):
0.636
MaxExpect:
0.487
Sensitivity TurboFold(20):
0.629
MaxExpect:
0.498
Positive Predictive Value TurboFold(20):
0.649
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
?
TurboFold(20) vs TurboFold(seed)
Matthews Correlation Coefficient TurboFold(20):
0.562
TurboFold(seed):
0.553
Sensitivity TurboFold(20):
0.554
TurboFold(seed):
0.554
Positive Predictive Value TurboFold(20):
0.578
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs PknotsRG
Matthews Correlation Coefficient TurboFold(20):
0.636
PknotsRG:
0.526
Sensitivity TurboFold(20):
0.629
PknotsRG:
0.579
Positive Predictive Value TurboFold(20):
0.649
PknotsRG:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
?
Cylofold vs TurboFold(20)
Matthews Correlation Coefficient Cylofold:
0.780
TurboFold(20):
0.777
Sensitivity Cylofold:
0.752
TurboFold(20):
0.713
Positive Predictive Value Cylofold:
0.819
TurboFold(20):
0.855
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient TurboFold(20):
0.653
CentroidHomfold‑LAST:
0.572
Sensitivity TurboFold(20):
0.652
CentroidHomfold‑LAST:
0.578
Positive Predictive Value TurboFold(20):
0.661
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
+
TurboFold(20) vs RNASLOpt
Matthews Correlation Coefficient TurboFold(20):
0.596
RNASLOpt:
0.480
Sensitivity TurboFold(20):
0.597
RNASLOpt:
0.500
Positive Predictive Value TurboFold(20):
0.603
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.07229227445e-09
|
+
TurboFold(20) vs McQFold
Matthews Correlation Coefficient TurboFold(20):
0.636
McQFold:
0.599
Sensitivity TurboFold(20):
0.629
McQFold:
0.641
Positive Predictive Value TurboFold(20):
0.649
McQFold:
0.568
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
+
TurboFold(20) vs ProbKnot
Matthews Correlation Coefficient TurboFold(20):
0.636
ProbKnot:
0.483
Sensitivity TurboFold(20):
0.629
ProbKnot:
0.525
Positive Predictive Value TurboFold(20):
0.649
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.93248927742e-08
|
+
TurboFold(20) vs UNAFold
Matthews Correlation Coefficient TurboFold(20):
0.636
UNAFold:
0.461
Sensitivity TurboFold(20):
0.629
UNAFold:
0.498
Positive Predictive Value TurboFold(20):
0.649
UNAFold:
0.437
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
+
TurboFold(20) vs HotKnots
Matthews Correlation Coefficient TurboFold(20):
0.636
HotKnots:
0.463
Sensitivity TurboFold(20):
0.629
HotKnots:
0.514
Positive Predictive Value TurboFold(20):
0.649
HotKnots:
0.429
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
+
TurboFold(20) vs RNAshapes
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAshapes:
0.491
Sensitivity TurboFold(20):
0.629
RNAshapes:
0.529
Positive Predictive Value TurboFold(20):
0.649
RNAshapes:
0.466
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
+
TurboFold(20) vs RNAfold
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAfold:
0.468
Sensitivity TurboFold(20):
0.629
RNAfold:
0.506
Positive Predictive Value TurboFold(20):
0.649
RNAfold:
0.444
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
?
TurboFold(20) vs Afold
Matthews Correlation Coefficient TurboFold(20):
0.519
Afold:
0.501
Sensitivity TurboFold(20):
0.527
Afold:
0.554
Positive Predictive Value TurboFold(20):
0.520
Afold:
0.461
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs RSpredict(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
RSpredict(20):
0.515
Sensitivity TurboFold(20):
0.629
RSpredict(20):
0.486
Positive Predictive Value TurboFold(20):
0.649
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
?
Multilign(seed) vs TurboFold(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
TurboFold(20):
0.619
Sensitivity Multilign(seed):
0.587
TurboFold(20):
0.595
Positive Predictive Value Multilign(seed):
0.673
TurboFold(20):
0.652
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs RNAsubopt
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAsubopt:
0.489
Sensitivity TurboFold(20):
0.629
RNAsubopt:
0.537
Positive Predictive Value TurboFold(20):
0.649
RNAsubopt:
0.456
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
+
TurboFold(20) vs Fold
Matthews Correlation Coefficient TurboFold(20):
0.636
Fold:
0.414
Sensitivity TurboFold(20):
0.629
Fold:
0.456
Positive Predictive Value TurboFold(20):
0.649
Fold:
0.388
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
+
TurboFold(20) vs Vsfold4
Matthews Correlation Coefficient TurboFold(20):
0.653
Vsfold4:
0.526
Sensitivity TurboFold(20):
0.652
Vsfold4:
0.535
Positive Predictive Value TurboFold(20):
0.661
Vsfold4:
0.528
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
?
RNASampler(seed) vs TurboFold(20)
Matthews Correlation Coefficient RNASampler(seed):
0.526
TurboFold(20):
0.515
Sensitivity RNASampler(seed):
0.478
TurboFold(20):
0.537
Positive Predictive Value RNASampler(seed):
0.586
TurboFold(20):
0.500
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs Multilign(20)
Matthews Correlation Coefficient TurboFold(20):
0.653
Multilign(20):
0.517
Sensitivity TurboFold(20):
0.652
Multilign(20):
0.530
Positive Predictive Value TurboFold(20):
0.661
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
+
TurboFold(20) vs Mastr(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Mastr(20):
0.544
Sensitivity TurboFold(20):
0.629
Mastr(20):
0.363
Positive Predictive Value TurboFold(20):
0.649
Mastr(20):
0.825
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.72523032126e-08
|
+
TurboFold(20) vs Murlet(seed)
Matthews Correlation Coefficient TurboFold(20):
0.601
Murlet(seed):
0.535
Sensitivity TurboFold(20):
0.589
Murlet(seed):
0.342
Positive Predictive Value TurboFold(20):
0.620
Murlet(seed):
0.843
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.46357340646e-08
|
+
TurboFold(20) vs Vsfold5
Matthews Correlation Coefficient TurboFold(20):
0.653
Vsfold5:
0.504
Sensitivity TurboFold(20):
0.652
Vsfold5:
0.539
Positive Predictive Value TurboFold(20):
0.661
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
?
TurboFold(20) vs Alterna
Matthews Correlation Coefficient TurboFold(20):
0.797
Alterna:
0.673
Sensitivity TurboFold(20):
0.755
Alterna:
0.660
Positive Predictive Value TurboFold(20):
0.851
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(20) vs RDfolder
Matthews Correlation Coefficient TurboFold(20):
0.768
RDfolder:
0.608
Sensitivity TurboFold(20):
0.717
RDfolder:
0.533
Positive Predictive Value TurboFold(20):
0.832
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs MCFold
Matthews Correlation Coefficient TurboFold(20):
0.633
MCFold:
0.409
Sensitivity TurboFold(20):
0.635
MCFold:
0.470
Positive Predictive Value TurboFold(20):
0.638
MCFold:
0.367
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.79651608537e-09
|
+
TurboFold(20) vs RNAwolf
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAwolf:
0.396
Sensitivity TurboFold(20):
0.629
RNAwolf:
0.425
Positive Predictive Value TurboFold(20):
0.649
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
+
TurboFold(20) vs RSpredict(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
RSpredict(seed):
0.261
Sensitivity TurboFold(20):
0.629
RSpredict(seed):
0.131
Positive Predictive Value TurboFold(20):
0.649
RSpredict(seed):
0.531
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
TurboFold(20) vs Carnac(seed)
Matthews Correlation Coefficient TurboFold(20):
0.601
Carnac(seed):
0.000
Sensitivity TurboFold(20):
0.589
Carnac(seed):
0.000
Positive Predictive Value TurboFold(20):
0.620
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.18166149643e-09
|
?
TurboFold(20) vs NanoFolder
Matthews Correlation Coefficient TurboFold(20):
0.519
NanoFolder:
0.314
Sensitivity TurboFold(20):
0.547
NanoFolder:
0.427
Positive Predictive Value TurboFold(20):
0.500
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(20) vs PPfold(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
PPfold(seed):
0.073
Sensitivity TurboFold(20):
0.629
PPfold(seed):
0.019
Positive Predictive Value TurboFold(20):
0.649
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
?
TurboFold(20) vs CMfinder(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
CMfinder(seed):
N/A
Sensitivity TurboFold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(20) vs DAFS(20)
Matthews Correlation Coefficient TurboFold(20):
N/A
DAFS(20):
N/A
Sensitivity TurboFold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value TurboFold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(20) vs CMfinder(20)
Matthews Correlation Coefficient TurboFold(20):
0.656
CMfinder(20):
0.580
Sensitivity TurboFold(20):
0.714
CMfinder(20):
0.500
Positive Predictive Value TurboFold(20):
0.609
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(20) vs CRWrnafold
Matthews Correlation Coefficient TurboFold(20):
0.597
CRWrnafold:
0.592
Sensitivity TurboFold(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value TurboFold(20):
0.652
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(20) vs DAFS(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
DAFS(seed):
N/A
Sensitivity TurboFold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
TurboFold(20) vs Mastr(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
Mastr(seed):
0.000
Sensitivity TurboFold(20):
0.629
Mastr(seed):
0.000
Positive Predictive Value TurboFold(20):
0.649
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
RNASampler(20) |
21
CentroidAlifold(seed) vs RNASampler(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
RNASampler(20):
0.692
Sensitivity CentroidAlifold(seed):
0.575
RNASampler(20):
0.621
Positive Predictive Value CentroidAlifold(seed):
0.930
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
CentroidAlifold(20) vs RNASampler(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNASampler(20):
0.692
Sensitivity CentroidAlifold(20):
0.664
RNASampler(20):
0.621
Positive Predictive Value CentroidAlifold(20):
0.900
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
10
PETfold_pre2.0(seed) vs RNASampler(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RNASampler(20):
0.573
Sensitivity PETfold_pre2.0(seed):
0.752
RNASampler(20):
0.539
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNASampler(20):
0.617
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
17
RNAalifold(seed) vs RNASampler(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
RNASampler(20):
0.647
Sensitivity RNAalifold(seed):
0.487
RNASampler(20):
0.569
Positive Predictive Value RNAalifold(seed):
0.927
RNASampler(20):
0.742
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
21
RNAalifold(20) vs RNASampler(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNASampler(20):
0.692
Sensitivity RNAalifold(20):
0.654
RNASampler(20):
0.621
Positive Predictive Value RNAalifold(20):
0.826
RNASampler(20):
0.776
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
20
MXScarna(seed) vs RNASampler(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
RNASampler(20):
0.684
Sensitivity MXScarna(seed):
0.646
RNASampler(20):
0.610
Positive Predictive Value MXScarna(seed):
0.779
RNASampler(20):
0.773
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 8.01557756351e-08
|
21
RNASampler(20) vs CentroidFold
Matthews Correlation Coefficient RNASampler(20):
0.692
CentroidFold:
0.667
Sensitivity RNASampler(20):
0.621
CentroidFold:
0.649
Positive Predictive Value RNASampler(20):
0.776
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
12
PPfold(20) vs RNASampler(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RNASampler(20):
0.628
Sensitivity PPfold(20):
0.614
RNASampler(20):
0.583
Positive Predictive Value PPfold(20):
0.733
RNASampler(20):
0.683
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
12
TurboFold(20) vs RNASampler(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
RNASampler(20):
0.628
Sensitivity TurboFold(20):
0.629
RNASampler(20):
0.583
Positive Predictive Value TurboFold(20):
0.649
RNASampler(20):
0.683
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.23172650901e-05
|
|
+
RNASampler(20) vs MXScarna(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
MXScarna(20):
0.678
Sensitivity RNASampler(20):
0.621
MXScarna(20):
0.640
Positive Predictive Value RNASampler(20):
0.776
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNASampler(20) vs ContextFold
Matthews Correlation Coefficient RNASampler(20):
0.573
ContextFold:
0.558
Sensitivity RNASampler(20):
0.539
ContextFold:
0.544
Positive Predictive Value RNASampler(20):
0.617
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.46655682781e-07
|
+
RNASampler(20) vs IPknot
Matthews Correlation Coefficient RNASampler(20):
0.628
IPknot:
0.536
Sensitivity RNASampler(20):
0.583
IPknot:
0.525
Positive Predictive Value RNASampler(20):
0.683
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.5281770229e-09
|
+
RNASampler(20) vs Contrafold
Matthews Correlation Coefficient RNASampler(20):
0.692
Contrafold:
0.608
Sensitivity RNASampler(20):
0.621
Contrafold:
0.621
Positive Predictive Value RNASampler(20):
0.776
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
RNASampler(20) vs Carnac(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Carnac(20):
0.641
Sensitivity RNASampler(20):
0.621
Carnac(20):
0.456
Positive Predictive Value RNASampler(20):
0.776
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNASampler(20) vs Murlet(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Murlet(20):
0.625
Sensitivity RNASampler(20):
0.621
Murlet(20):
0.530
Positive Predictive Value RNASampler(20):
0.776
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
-
PETfold_pre2.0(20) vs RNASampler(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNASampler(20):
0.573
Sensitivity PETfold_pre2.0(20):
0.597
RNASampler(20):
0.539
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNASampler(20):
0.617
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
+
RNASampler(20) vs Sfold
Matthews Correlation Coefficient RNASampler(20):
0.692
Sfold:
0.609
Sensitivity RNASampler(20):
0.621
Sfold:
0.583
Positive Predictive Value RNASampler(20):
0.776
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASampler(20) vs Pknots
Matthews Correlation Coefficient RNASampler(20):
0.723
Pknots:
0.590
Sensitivity RNASampler(20):
0.663
Pknots:
0.630
Positive Predictive Value RNASampler(20):
0.795
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNASampler(20) vs MaxExpect
Matthews Correlation Coefficient RNASampler(20):
0.692
MaxExpect:
0.608
Sensitivity RNASampler(20):
0.621
MaxExpect:
0.611
Positive Predictive Value RNASampler(20):
0.776
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
RNASampler(20) vs TurboFold(seed)
Matthews Correlation Coefficient RNASampler(20):
0.565
TurboFold(seed):
0.553
Sensitivity RNASampler(20):
0.518
TurboFold(seed):
0.554
Positive Predictive Value RNASampler(20):
0.623
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs PknotsRG
Matthews Correlation Coefficient RNASampler(20):
0.692
PknotsRG:
0.598
Sensitivity RNASampler(20):
0.621
PknotsRG:
0.633
Positive Predictive Value RNASampler(20):
0.776
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
RNASampler(20) vs Cylofold
Matthews Correlation Coefficient RNASampler(20):
0.768
Cylofold:
0.752
Sensitivity RNASampler(20):
0.681
Cylofold:
0.734
Positive Predictive Value RNASampler(20):
0.872
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNASampler(20):
0.662
CentroidHomfold‑LAST:
0.572
Sensitivity RNASampler(20):
0.617
CentroidHomfold‑LAST:
0.578
Positive Predictive Value RNASampler(20):
0.717
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.69977563177e-09
|
+
RNASampler(20) vs RNASLOpt
Matthews Correlation Coefficient RNASampler(20):
0.573
RNASLOpt:
0.480
Sensitivity RNASampler(20):
0.539
RNASLOpt:
0.500
Positive Predictive Value RNASampler(20):
0.617
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
+
RNASampler(20) vs McQFold
Matthews Correlation Coefficient RNASampler(20):
0.692
McQFold:
0.613
Sensitivity RNASampler(20):
0.621
McQFold:
0.628
Positive Predictive Value RNASampler(20):
0.776
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASampler(20) vs ProbKnot
Matthews Correlation Coefficient RNASampler(20):
0.631
ProbKnot:
0.562
Sensitivity RNASampler(20):
0.562
ProbKnot:
0.600
Positive Predictive Value RNASampler(20):
0.714
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
RNASampler(20) vs UNAFold
Matthews Correlation Coefficient RNASampler(20):
0.692
UNAFold:
0.581
Sensitivity RNASampler(20):
0.621
UNAFold:
0.602
Positive Predictive Value RNASampler(20):
0.776
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASampler(20) vs HotKnots
Matthews Correlation Coefficient RNASampler(20):
0.692
HotKnots:
0.548
Sensitivity RNASampler(20):
0.621
HotKnots:
0.585
Positive Predictive Value RNASampler(20):
0.776
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNASampler(20) vs RNAshapes
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAshapes:
0.576
Sensitivity RNASampler(20):
0.621
RNAshapes:
0.596
Positive Predictive Value RNASampler(20):
0.776
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASampler(20) vs RNAfold
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAfold:
0.572
Sensitivity RNASampler(20):
0.621
RNAfold:
0.601
Positive Predictive Value RNASampler(20):
0.776
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
RNASampler(20) vs Afold
Matthews Correlation Coefficient RNASampler(20):
0.661
Afold:
0.547
Sensitivity RNASampler(20):
0.582
Afold:
0.579
Positive Predictive Value RNASampler(20):
0.755
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.69265863073e-08
|
+
RNASampler(20) vs RSpredict(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
RSpredict(20):
0.585
Sensitivity RNASampler(20):
0.621
RSpredict(20):
0.534
Positive Predictive Value RNASampler(20):
0.776
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
Multilign(seed) vs RNASampler(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
RNASampler(20):
0.611
Sensitivity Multilign(seed):
0.587
RNASampler(20):
0.548
Positive Predictive Value Multilign(seed):
0.673
RNASampler(20):
0.690
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs RNAsubopt
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAsubopt:
0.564
Sensitivity RNASampler(20):
0.621
RNAsubopt:
0.596
Positive Predictive Value RNASampler(20):
0.776
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNASampler(20) vs Fold
Matthews Correlation Coefficient RNASampler(20):
0.631
Fold:
0.526
Sensitivity RNASampler(20):
0.562
Fold:
0.562
Positive Predictive Value RNASampler(20):
0.714
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
+
RNASampler(20) vs Vsfold4
Matthews Correlation Coefficient RNASampler(20):
0.710
Vsfold4:
0.537
Sensitivity RNASampler(20):
0.638
Vsfold4:
0.531
Positive Predictive Value RNASampler(20):
0.796
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
RNASampler(seed) vs RNASampler(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
RNASampler(20):
0.554
Sensitivity RNASampler(seed):
0.525
RNASampler(20):
0.530
Positive Predictive Value RNASampler(seed):
0.638
RNASampler(20):
0.585
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs Multilign(20)
Matthews Correlation Coefficient RNASampler(20):
0.662
Multilign(20):
0.517
Sensitivity RNASampler(20):
0.617
Multilign(20):
0.530
Positive Predictive Value RNASampler(20):
0.717
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
RNASampler(20) vs Mastr(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Mastr(20):
0.508
Sensitivity RNASampler(20):
0.621
Mastr(20):
0.329
Positive Predictive Value RNASampler(20):
0.776
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNASampler(20) vs Murlet(seed)
Matthews Correlation Coefficient RNASampler(20):
0.675
Murlet(seed):
0.564
Sensitivity RNASampler(20):
0.606
Murlet(seed):
0.366
Positive Predictive Value RNASampler(20):
0.759
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
+
RNASampler(20) vs Vsfold5
Matthews Correlation Coefficient RNASampler(20):
0.710
Vsfold5:
0.493
Sensitivity RNASampler(20):
0.638
Vsfold5:
0.493
Positive Predictive Value RNASampler(20):
0.796
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
RNASampler(20) vs Alterna
Matthews Correlation Coefficient RNASampler(20):
0.903
Alterna:
0.593
Sensitivity RNASampler(20):
0.825
Alterna:
0.596
Positive Predictive Value RNASampler(20):
0.993
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs RDfolder
Matthews Correlation Coefficient RNASampler(20):
0.868
RDfolder:
0.641
Sensitivity RNASampler(20):
0.789
RDfolder:
0.585
Positive Predictive Value RNASampler(20):
0.959
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
+
RNASampler(20) vs MCFold
Matthews Correlation Coefficient RNASampler(20):
0.724
MCFold:
0.453
Sensitivity RNASampler(20):
0.676
MCFold:
0.507
Positive Predictive Value RNASampler(20):
0.780
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
+
RNASampler(20) vs RNAwolf
Matthews Correlation Coefficient RNASampler(20):
0.628
RNAwolf:
0.396
Sensitivity RNASampler(20):
0.583
RNAwolf:
0.425
Positive Predictive Value RNASampler(20):
0.683
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.5281770229e-09
|
+
RNASampler(20) vs RSpredict(seed)
Matthews Correlation Coefficient RNASampler(20):
0.692
RSpredict(seed):
0.296
Sensitivity RNASampler(20):
0.621
RSpredict(seed):
0.148
Positive Predictive Value RNASampler(20):
0.776
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASampler(20) vs Carnac(seed)
Matthews Correlation Coefficient RNASampler(20):
0.675
Carnac(seed):
0.000
Sensitivity RNASampler(20):
0.606
Carnac(seed):
0.000
Positive Predictive Value RNASampler(20):
0.759
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
?
RNASampler(20) vs NanoFolder
Matthews Correlation Coefficient RNASampler(20):
0.547
NanoFolder:
0.314
Sensitivity RNASampler(20):
0.538
NanoFolder:
0.427
Positive Predictive Value RNASampler(20):
0.563
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(20) vs PPfold(seed)
Matthews Correlation Coefficient RNASampler(20):
0.628
PPfold(seed):
0.073
Sensitivity RNASampler(20):
0.583
PPfold(seed):
0.019
Positive Predictive Value RNASampler(20):
0.683
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
?
RNASampler(20) vs CMfinder(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
CMfinder(seed):
N/A
Sensitivity RNASampler(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(20) vs DAFS(20)
Matthews Correlation Coefficient RNASampler(20):
N/A
DAFS(20):
N/A
Sensitivity RNASampler(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RNASampler(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(20) vs CMfinder(20)
Matthews Correlation Coefficient RNASampler(20):
0.629
CMfinder(20):
0.580
Sensitivity RNASampler(20):
0.633
CMfinder(20):
0.500
Positive Predictive Value RNASampler(20):
0.633
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(20) vs CRWrnafold
Matthews Correlation Coefficient RNASampler(20):
0.642
CRWrnafold:
0.592
Sensitivity RNASampler(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value RNASampler(20):
0.750
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(20) vs DAFS(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
DAFS(seed):
N/A
Sensitivity RNASampler(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNASampler(20) vs Mastr(seed)
Matthews Correlation Coefficient RNASampler(20):
0.692
Mastr(seed):
0.000
Sensitivity RNASampler(20):
0.621
Mastr(seed):
0.000
Positive Predictive Value RNASampler(20):
0.776
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
MXScarna(20) |
21
CentroidAlifold(seed) vs MXScarna(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
MXScarna(20):
0.678
Sensitivity CentroidAlifold(seed):
0.575
MXScarna(20):
0.640
Positive Predictive Value CentroidAlifold(seed):
0.930
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
CentroidAlifold(20) vs MXScarna(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
MXScarna(20):
0.678
Sensitivity CentroidAlifold(20):
0.664
MXScarna(20):
0.640
Positive Predictive Value CentroidAlifold(20):
0.900
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
10
PETfold_pre2.0(seed) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
MXScarna(20):
0.550
Sensitivity PETfold_pre2.0(seed):
0.752
MXScarna(20):
0.519
Positive Predictive Value PETfold_pre2.0(seed):
0.861
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.10032755566e-08
|
17
RNAalifold(seed) vs MXScarna(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
MXScarna(20):
0.644
Sensitivity RNAalifold(seed):
0.487
MXScarna(20):
0.603
Positive Predictive Value RNAalifold(seed):
0.927
MXScarna(20):
0.694
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.97012568641e-08
|
21
RNAalifold(20) vs MXScarna(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
MXScarna(20):
0.678
Sensitivity RNAalifold(20):
0.654
MXScarna(20):
0.640
Positive Predictive Value RNAalifold(20):
0.826
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
20
MXScarna(seed) vs MXScarna(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
MXScarna(20):
0.670
Sensitivity MXScarna(seed):
0.646
MXScarna(20):
0.630
Positive Predictive Value MXScarna(seed):
0.779
MXScarna(20):
0.718
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
21
MXScarna(20) vs CentroidFold
Matthews Correlation Coefficient MXScarna(20):
0.678
CentroidFold:
0.667
Sensitivity MXScarna(20):
0.640
CentroidFold:
0.649
Positive Predictive Value MXScarna(20):
0.724
CentroidFold:
0.692
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.45033651981e-07
|
12
PPfold(20) vs MXScarna(20)
Matthews Correlation Coefficient PPfold(20):
0.668
MXScarna(20):
0.600
Sensitivity PPfold(20):
0.614
MXScarna(20):
0.568
Positive Predictive Value PPfold(20):
0.733
MXScarna(20):
0.642
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
12
TurboFold(20) vs MXScarna(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
MXScarna(20):
0.600
Sensitivity TurboFold(20):
0.629
MXScarna(20):
0.568
Positive Predictive Value TurboFold(20):
0.649
MXScarna(20):
0.642
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.36849473644e-08
|
21
RNASampler(20) vs MXScarna(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
MXScarna(20):
0.678
Sensitivity RNASampler(20):
0.621
MXScarna(20):
0.640
Positive Predictive Value RNASampler(20):
0.776
MXScarna(20):
0.724
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
|
-
ContextFold vs MXScarna(20)
Matthews Correlation Coefficient ContextFold:
0.558
MXScarna(20):
0.550
Sensitivity ContextFold:
0.544
MXScarna(20):
0.519
Positive Predictive Value ContextFold:
0.580
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.000344965941577
|
+
MXScarna(20) vs IPknot
Matthews Correlation Coefficient MXScarna(20):
0.600
IPknot:
0.536
Sensitivity MXScarna(20):
0.568
IPknot:
0.525
Positive Predictive Value MXScarna(20):
0.642
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
+
MXScarna(20) vs Contrafold
Matthews Correlation Coefficient MXScarna(20):
0.678
Contrafold:
0.608
Sensitivity MXScarna(20):
0.640
Contrafold:
0.621
Positive Predictive Value MXScarna(20):
0.724
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MXScarna(20) vs Carnac(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Carnac(20):
0.641
Sensitivity MXScarna(20):
0.640
Carnac(20):
0.456
Positive Predictive Value MXScarna(20):
0.724
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
MXScarna(20) vs Murlet(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Murlet(20):
0.625
Sensitivity MXScarna(20):
0.640
Murlet(20):
0.530
Positive Predictive Value MXScarna(20):
0.724
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
-
PETfold_pre2.0(20) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
MXScarna(20):
0.550
Sensitivity PETfold_pre2.0(20):
0.597
MXScarna(20):
0.519
Positive Predictive Value PETfold_pre2.0(20):
0.654
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14308339945e-09
|
+
MXScarna(20) vs Sfold
Matthews Correlation Coefficient MXScarna(20):
0.678
Sfold:
0.609
Sensitivity MXScarna(20):
0.640
Sfold:
0.583
Positive Predictive Value MXScarna(20):
0.724
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
+
MXScarna(20) vs Pknots
Matthews Correlation Coefficient MXScarna(20):
0.697
Pknots:
0.590
Sensitivity MXScarna(20):
0.660
Pknots:
0.630
Positive Predictive Value MXScarna(20):
0.741
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(20) vs MaxExpect
Matthews Correlation Coefficient MXScarna(20):
0.678
MaxExpect:
0.608
Sensitivity MXScarna(20):
0.640
MaxExpect:
0.611
Positive Predictive Value MXScarna(20):
0.724
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
?
TurboFold(seed) vs MXScarna(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
MXScarna(20):
0.525
Sensitivity TurboFold(seed):
0.554
MXScarna(20):
0.492
Positive Predictive Value TurboFold(seed):
0.560
MXScarna(20):
0.568
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs PknotsRG
Matthews Correlation Coefficient MXScarna(20):
0.678
PknotsRG:
0.598
Sensitivity MXScarna(20):
0.640
PknotsRG:
0.633
Positive Predictive Value MXScarna(20):
0.724
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
Cylofold vs MXScarna(20)
Matthews Correlation Coefficient Cylofold:
0.752
MXScarna(20):
0.741
Sensitivity Cylofold:
0.734
MXScarna(20):
0.681
Positive Predictive Value Cylofold:
0.778
MXScarna(20):
0.813
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient MXScarna(20):
0.628
CentroidHomfold‑LAST:
0.572
Sensitivity MXScarna(20):
0.600
CentroidHomfold‑LAST:
0.578
Positive Predictive Value MXScarna(20):
0.667
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.84090256161e-09
|
+
MXScarna(20) vs RNASLOpt
Matthews Correlation Coefficient MXScarna(20):
0.550
RNASLOpt:
0.480
Sensitivity MXScarna(20):
0.519
RNASLOpt:
0.500
Positive Predictive Value MXScarna(20):
0.591
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
MXScarna(20) vs McQFold
Matthews Correlation Coefficient MXScarna(20):
0.678
McQFold:
0.613
Sensitivity MXScarna(20):
0.640
McQFold:
0.628
Positive Predictive Value MXScarna(20):
0.724
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MXScarna(20) vs ProbKnot
Matthews Correlation Coefficient MXScarna(20):
0.639
ProbKnot:
0.562
Sensitivity MXScarna(20):
0.603
ProbKnot:
0.600
Positive Predictive Value MXScarna(20):
0.682
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
+
MXScarna(20) vs UNAFold
Matthews Correlation Coefficient MXScarna(20):
0.678
UNAFold:
0.581
Sensitivity MXScarna(20):
0.640
UNAFold:
0.602
Positive Predictive Value MXScarna(20):
0.724
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(20) vs HotKnots
Matthews Correlation Coefficient MXScarna(20):
0.678
HotKnots:
0.548
Sensitivity MXScarna(20):
0.640
HotKnots:
0.585
Positive Predictive Value MXScarna(20):
0.724
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
MXScarna(20) vs RNAshapes
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAshapes:
0.576
Sensitivity MXScarna(20):
0.640
RNAshapes:
0.596
Positive Predictive Value MXScarna(20):
0.724
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(20) vs RNAfold
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAfold:
0.572
Sensitivity MXScarna(20):
0.640
RNAfold:
0.601
Positive Predictive Value MXScarna(20):
0.724
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MXScarna(20) vs Afold
Matthews Correlation Coefficient MXScarna(20):
0.645
Afold:
0.547
Sensitivity MXScarna(20):
0.597
Afold:
0.579
Positive Predictive Value MXScarna(20):
0.701
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
+
MXScarna(20) vs RSpredict(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
RSpredict(20):
0.585
Sensitivity MXScarna(20):
0.640
RSpredict(20):
0.534
Positive Predictive Value MXScarna(20):
0.724
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
Multilign(seed) vs MXScarna(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
MXScarna(20):
0.602
Sensitivity Multilign(seed):
0.587
MXScarna(20):
0.571
Positive Predictive Value Multilign(seed):
0.673
MXScarna(20):
0.643
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs RNAsubopt
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAsubopt:
0.564
Sensitivity MXScarna(20):
0.640
RNAsubopt:
0.596
Positive Predictive Value MXScarna(20):
0.724
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MXScarna(20) vs Fold
Matthews Correlation Coefficient MXScarna(20):
0.639
Fold:
0.526
Sensitivity MXScarna(20):
0.603
Fold:
0.562
Positive Predictive Value MXScarna(20):
0.682
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.91763127434e-08
|
+
MXScarna(20) vs Vsfold4
Matthews Correlation Coefficient MXScarna(20):
0.694
Vsfold4:
0.537
Sensitivity MXScarna(20):
0.658
Vsfold4:
0.531
Positive Predictive Value MXScarna(20):
0.738
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
RNASampler(seed) vs MXScarna(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
MXScarna(20):
0.552
Sensitivity RNASampler(seed):
0.525
MXScarna(20):
0.536
Positive Predictive Value RNASampler(seed):
0.638
MXScarna(20):
0.574
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs Multilign(20)
Matthews Correlation Coefficient MXScarna(20):
0.628
Multilign(20):
0.517
Sensitivity MXScarna(20):
0.600
Multilign(20):
0.530
Positive Predictive Value MXScarna(20):
0.667
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
+
MXScarna(20) vs Mastr(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Mastr(20):
0.508
Sensitivity MXScarna(20):
0.640
Mastr(20):
0.329
Positive Predictive Value MXScarna(20):
0.724
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
MXScarna(20) vs Murlet(seed)
Matthews Correlation Coefficient MXScarna(20):
0.659
Murlet(seed):
0.564
Sensitivity MXScarna(20):
0.619
Murlet(seed):
0.366
Positive Predictive Value MXScarna(20):
0.708
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
+
MXScarna(20) vs Vsfold5
Matthews Correlation Coefficient MXScarna(20):
0.694
Vsfold5:
0.493
Sensitivity MXScarna(20):
0.658
Vsfold5:
0.493
Positive Predictive Value MXScarna(20):
0.738
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
MXScarna(20) vs Alterna
Matthews Correlation Coefficient MXScarna(20):
0.819
Alterna:
0.593
Sensitivity MXScarna(20):
0.778
Alterna:
0.596
Positive Predictive Value MXScarna(20):
0.869
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs RDfolder
Matthews Correlation Coefficient MXScarna(20):
0.789
RDfolder:
0.641
Sensitivity MXScarna(20):
0.737
RDfolder:
0.585
Positive Predictive Value MXScarna(20):
0.854
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
+
MXScarna(20) vs MCFold
Matthews Correlation Coefficient MXScarna(20):
0.691
MCFold:
0.453
Sensitivity MXScarna(20):
0.652
MCFold:
0.507
Positive Predictive Value MXScarna(20):
0.739
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
+
MXScarna(20) vs RNAwolf
Matthews Correlation Coefficient MXScarna(20):
0.600
RNAwolf:
0.396
Sensitivity MXScarna(20):
0.568
RNAwolf:
0.425
Positive Predictive Value MXScarna(20):
0.642
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
+
MXScarna(20) vs RSpredict(seed)
Matthews Correlation Coefficient MXScarna(20):
0.678
RSpredict(seed):
0.296
Sensitivity MXScarna(20):
0.640
RSpredict(seed):
0.148
Positive Predictive Value MXScarna(20):
0.724
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
MXScarna(20) vs Carnac(seed)
Matthews Correlation Coefficient MXScarna(20):
0.659
Carnac(seed):
0.000
Sensitivity MXScarna(20):
0.619
Carnac(seed):
0.000
Positive Predictive Value MXScarna(20):
0.708
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.55268413083e-08
|
?
MXScarna(20) vs NanoFolder
Matthews Correlation Coefficient MXScarna(20):
0.535
NanoFolder:
0.314
Sensitivity MXScarna(20):
0.538
NanoFolder:
0.427
Positive Predictive Value MXScarna(20):
0.538
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
MXScarna(20) vs PPfold(seed)
Matthews Correlation Coefficient MXScarna(20):
0.600
PPfold(seed):
0.073
Sensitivity MXScarna(20):
0.568
PPfold(seed):
0.019
Positive Predictive Value MXScarna(20):
0.642
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
?
CMfinder(seed) vs MXScarna(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
MXScarna(20):
N/A
Sensitivity CMfinder(seed):
N/A
MXScarna(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MXScarna(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MXScarna(20) vs DAFS(20)
Matthews Correlation Coefficient MXScarna(20):
N/A
DAFS(20):
N/A
Sensitivity MXScarna(20):
N/A
DAFS(20):
N/A
Positive Predictive Value MXScarna(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MXScarna(20) vs CMfinder(20)
Matthews Correlation Coefficient MXScarna(20):
0.657
CMfinder(20):
0.580
Sensitivity MXScarna(20):
0.653
CMfinder(20):
0.500
Positive Predictive Value MXScarna(20):
0.667
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs MXScarna(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
MXScarna(20):
0.554
Sensitivity CRWrnafold:
0.611
MXScarna(20):
0.519
Positive Predictive Value CRWrnafold:
0.584
MXScarna(20):
0.602
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs MXScarna(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
MXScarna(20):
N/A
Sensitivity DAFS(seed):
N/A
MXScarna(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
MXScarna(20) vs Mastr(seed)
Matthews Correlation Coefficient MXScarna(20):
0.678
Mastr(seed):
0.000
Sensitivity MXScarna(20):
0.640
Mastr(seed):
0.000
Positive Predictive Value MXScarna(20):
0.724
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
ContextFold |
16
CentroidAlifold(seed) vs ContextFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.806
ContextFold:
0.766
Sensitivity CentroidAlifold(seed):
0.705
ContextFold:
0.747
Positive Predictive Value CentroidAlifold(seed):
0.923
ContextFold:
0.785
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
10
CentroidAlifold(20) vs ContextFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
ContextFold:
0.558
Sensitivity CentroidAlifold(20):
0.558
ContextFold:
0.544
Positive Predictive Value CentroidAlifold(20):
0.816
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
16
PETfold_pre2.0(seed) vs ContextFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
ContextFold:
0.766
Sensitivity PETfold_pre2.0(seed):
0.802
ContextFold:
0.747
Positive Predictive Value PETfold_pre2.0(seed):
0.863
ContextFold:
0.785
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
14
RNAalifold(seed) vs ContextFold
Matthews Correlation Coefficient RNAalifold(seed):
0.767
ContextFold:
0.759
Sensitivity RNAalifold(seed):
0.670
ContextFold:
0.740
Positive Predictive Value RNAalifold(seed):
0.878
ContextFold:
0.780
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 0.000103482201598
|
10
RNAalifold(20) vs ContextFold
Matthews Correlation Coefficient RNAalifold(20):
0.620
ContextFold:
0.558
Sensitivity RNAalifold(20):
0.573
ContextFold:
0.544
Positive Predictive Value RNAalifold(20):
0.678
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
15
ContextFold vs MXScarna(seed)
Matthews Correlation Coefficient ContextFold:
0.765
MXScarna(seed):
0.728
Sensitivity ContextFold:
0.746
MXScarna(seed):
0.688
Positive Predictive Value ContextFold:
0.785
MXScarna(seed):
0.772
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.32677072069e-08
|
22
ContextFold vs CentroidFold
Matthews Correlation Coefficient ContextFold:
0.596
CentroidFold:
0.553
Sensitivity ContextFold:
0.588
CentroidFold:
0.527
Positive Predictive Value ContextFold:
0.604
CentroidFold:
0.582
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 9.34100095224e-08
|
10
PPfold(20) vs ContextFold
Matthews Correlation Coefficient PPfold(20):
0.624
ContextFold:
0.558
Sensitivity PPfold(20):
0.573
ContextFold:
0.544
Positive Predictive Value PPfold(20):
0.686
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
10
TurboFold(20) vs ContextFold
Matthews Correlation Coefficient TurboFold(20):
0.596
ContextFold:
0.558
Sensitivity TurboFold(20):
0.597
ContextFold:
0.544
Positive Predictive Value TurboFold(20):
0.603
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
10
RNASampler(20) vs ContextFold
Matthews Correlation Coefficient RNASampler(20):
0.573
ContextFold:
0.558
Sensitivity RNASampler(20):
0.539
ContextFold:
0.544
Positive Predictive Value RNASampler(20):
0.617
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.46655682781e-07
|
10
ContextFold vs MXScarna(20)
Matthews Correlation Coefficient ContextFold:
0.558
MXScarna(20):
0.550
Sensitivity ContextFold:
0.544
MXScarna(20):
0.519
Positive Predictive Value ContextFold:
0.580
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.000344965941577
|
|
=
ContextFold vs IPknot
Matthews Correlation Coefficient ContextFold:
0.596
IPknot:
0.590
Sensitivity ContextFold:
0.588
IPknot:
0.551
Positive Predictive Value ContextFold:
0.604
IPknot:
0.633
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 0.00498321506716
|
+
ContextFold vs Contrafold
Matthews Correlation Coefficient ContextFold:
0.596
Contrafold:
0.537
Sensitivity ContextFold:
0.588
Contrafold:
0.546
Positive Predictive Value ContextFold:
0.604
Contrafold:
0.529
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.51223576774e-08
|
+
ContextFold vs Carnac(20)
Matthews Correlation Coefficient ContextFold:
0.558
Carnac(20):
0.516
Sensitivity ContextFold:
0.544
Carnac(20):
0.345
Positive Predictive Value ContextFold:
0.580
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
+
ContextFold vs Murlet(20)
Matthews Correlation Coefficient ContextFold:
0.558
Murlet(20):
0.513
Sensitivity ContextFold:
0.544
Murlet(20):
0.461
Positive Predictive Value ContextFold:
0.580
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.23882059035e-07
|
-
PETfold_pre2.0(20) vs ContextFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
ContextFold:
0.558
Sensitivity PETfold_pre2.0(20):
0.597
ContextFold:
0.544
Positive Predictive Value PETfold_pre2.0(20):
0.654
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.58026052395e-09
|
+
ContextFold vs Sfold
Matthews Correlation Coefficient ContextFold:
0.596
Sfold:
0.499
Sensitivity ContextFold:
0.588
Sfold:
0.506
Positive Predictive Value ContextFold:
0.604
Sfold:
0.494
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.69757073427e-08
|
+
ContextFold vs Pknots
Matthews Correlation Coefficient ContextFold:
0.619
Pknots:
0.568
Sensitivity ContextFold:
0.594
Pknots:
0.609
Positive Predictive Value ContextFold:
0.655
Pknots:
0.541
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 9.04653292859e-08
|
+
ContextFold vs MaxExpect
Matthews Correlation Coefficient ContextFold:
0.596
MaxExpect:
0.500
Sensitivity ContextFold:
0.588
MaxExpect:
0.514
Positive Predictive Value ContextFold:
0.604
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 1.07002995419e-07
|
-
TurboFold(seed) vs ContextFold
Matthews Correlation Coefficient TurboFold(seed):
0.570
ContextFold:
0.515
Sensitivity TurboFold(seed):
0.564
ContextFold:
0.494
Positive Predictive Value TurboFold(seed):
0.585
ContextFold:
0.545
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
-
PknotsRG vs ContextFold
Matthews Correlation Coefficient PknotsRG:
0.473
ContextFold:
0.436
Sensitivity PknotsRG:
0.514
ContextFold:
0.429
Positive Predictive Value PknotsRG:
0.436
ContextFold:
0.444
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.73968271671e-07
|
+
ContextFold vs Cylofold
Matthews Correlation Coefficient ContextFold:
0.683
Cylofold:
0.603
Sensitivity ContextFold:
0.638
Cylofold:
0.583
Positive Predictive Value ContextFold:
0.743
Cylofold:
0.640
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
+
ContextFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient ContextFold:
0.617
CentroidHomfold‑LAST:
0.546
Sensitivity ContextFold:
0.596
CentroidHomfold‑LAST:
0.544
Positive Predictive Value ContextFold:
0.648
CentroidHomfold‑LAST:
0.560
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
+
ContextFold vs RNASLOpt
Matthews Correlation Coefficient ContextFold:
0.619
RNASLOpt:
0.558
Sensitivity ContextFold:
0.594
RNASLOpt:
0.555
Positive Predictive Value ContextFold:
0.655
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
ContextFold vs McQFold
Matthews Correlation Coefficient ContextFold:
0.596
McQFold:
0.446
Sensitivity ContextFold:
0.588
McQFold:
0.462
Positive Predictive Value ContextFold:
0.604
McQFold:
0.432
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
ContextFold vs ProbKnot
Matthews Correlation Coefficient ContextFold:
0.596
ProbKnot:
0.498
Sensitivity ContextFold:
0.588
ProbKnot:
0.520
Positive Predictive Value ContextFold:
0.604
ProbKnot:
0.477
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
+
ContextFold vs UNAFold
Matthews Correlation Coefficient ContextFold:
0.596
UNAFold:
0.472
Sensitivity ContextFold:
0.588
UNAFold:
0.499
Positive Predictive Value ContextFold:
0.604
UNAFold:
0.448
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
ContextFold vs HotKnots
Matthews Correlation Coefficient ContextFold:
0.619
HotKnots:
0.512
Sensitivity ContextFold:
0.594
HotKnots:
0.560
Positive Predictive Value ContextFold:
0.655
HotKnots:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
ContextFold vs RNAshapes
Matthews Correlation Coefficient ContextFold:
0.619
RNAshapes:
0.508
Sensitivity ContextFold:
0.594
RNAshapes:
0.533
Positive Predictive Value ContextFold:
0.655
RNAshapes:
0.495
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
ContextFold vs RNAfold
Matthews Correlation Coefficient ContextFold:
0.596
RNAfold:
0.474
Sensitivity ContextFold:
0.588
RNAfold:
0.503
Positive Predictive Value ContextFold:
0.604
RNAfold:
0.448
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
=
Afold vs ContextFold
Matthews Correlation Coefficient Afold:
0.373
ContextFold:
0.332
Sensitivity Afold:
0.410
ContextFold:
0.333
Positive Predictive Value Afold:
0.342
ContextFold:
0.333
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00890162725214
|
+
ContextFold vs RSpredict(20)
Matthews Correlation Coefficient ContextFold:
0.558
RSpredict(20):
0.419
Sensitivity ContextFold:
0.544
RSpredict(20):
0.388
Positive Predictive Value ContextFold:
0.580
RSpredict(20):
0.462
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.70625200892e-09
|
?
Multilign(seed) vs ContextFold
Matthews Correlation Coefficient Multilign(seed):
0.628
ContextFold:
0.588
Sensitivity Multilign(seed):
0.575
ContextFold:
0.565
Positive Predictive Value Multilign(seed):
0.696
ContextFold:
0.622
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
ContextFold vs RNAsubopt
Matthews Correlation Coefficient ContextFold:
0.619
RNAsubopt:
0.509
Sensitivity ContextFold:
0.594
RNAsubopt:
0.545
Positive Predictive Value ContextFold:
0.655
RNAsubopt:
0.487
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
ContextFold vs Fold
Matthews Correlation Coefficient ContextFold:
0.596
Fold:
0.446
Sensitivity ContextFold:
0.588
Fold:
0.476
Positive Predictive Value ContextFold:
0.604
Fold:
0.418
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
ContextFold vs Vsfold4
Matthews Correlation Coefficient ContextFold:
0.625
Vsfold4:
0.501
Sensitivity ContextFold:
0.601
Vsfold4:
0.495
Positive Predictive Value ContextFold:
0.659
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
?
ContextFold vs RNASampler(seed)
Matthews Correlation Coefficient ContextFold:
0.477
RNASampler(seed):
0.390
Sensitivity ContextFold:
0.475
RNASampler(seed):
0.323
Positive Predictive Value ContextFold:
0.487
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
ContextFold vs Multilign(20)
Matthews Correlation Coefficient ContextFold:
0.576
Multilign(20):
0.441
Sensitivity ContextFold:
0.565
Multilign(20):
0.458
Positive Predictive Value ContextFold:
0.595
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
ContextFold vs Mastr(20)
Matthews Correlation Coefficient ContextFold:
0.558
Mastr(20):
0.467
Sensitivity ContextFold:
0.544
Mastr(20):
0.272
Positive Predictive Value ContextFold:
0.580
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14531876181e-08
|
+
ContextFold vs Murlet(seed)
Matthews Correlation Coefficient ContextFold:
0.574
Murlet(seed):
0.473
Sensitivity ContextFold:
0.550
Murlet(seed):
0.300
Positive Predictive Value ContextFold:
0.609
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
+
ContextFold vs Vsfold5
Matthews Correlation Coefficient ContextFold:
0.608
Vsfold5:
0.506
Sensitivity ContextFold:
0.585
Vsfold5:
0.530
Positive Predictive Value ContextFold:
0.644
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
ContextFold vs Alterna
Matthews Correlation Coefficient ContextFold:
0.659
Alterna:
0.362
Sensitivity ContextFold:
0.621
Alterna:
0.345
Positive Predictive Value ContextFold:
0.720
Alterna:
0.417
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
+
ContextFold vs RDfolder
Matthews Correlation Coefficient ContextFold:
0.760
RDfolder:
0.491
Sensitivity ContextFold:
0.703
RDfolder:
0.443
Positive Predictive Value ContextFold:
0.833
RDfolder:
0.566
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
+
ContextFold vs MCFold
Matthews Correlation Coefficient ContextFold:
0.564
MCFold:
0.370
Sensitivity ContextFold:
0.541
MCFold:
0.421
Positive Predictive Value ContextFold:
0.598
MCFold:
0.338
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
+
ContextFold vs RNAwolf
Matthews Correlation Coefficient ContextFold:
0.596
RNAwolf:
0.392
Sensitivity ContextFold:
0.588
RNAwolf:
0.402
Positive Predictive Value ContextFold:
0.604
RNAwolf:
0.385
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
ContextFold vs RSpredict(seed)
Matthews Correlation Coefficient ContextFold:
0.766
RSpredict(seed):
0.572
Sensitivity ContextFold:
0.747
RSpredict(seed):
0.467
Positive Predictive Value ContextFold:
0.785
RSpredict(seed):
0.702
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
+
ContextFold vs Carnac(seed)
Matthews Correlation Coefficient ContextFold:
0.759
Carnac(seed):
0.577
Sensitivity ContextFold:
0.740
Carnac(seed):
0.357
Positive Predictive Value ContextFold:
0.780
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
ContextFold vs NanoFolder
Matthews Correlation Coefficient ContextFold:
0.570
NanoFolder:
0.406
Sensitivity ContextFold:
0.556
NanoFolder:
0.516
Positive Predictive Value ContextFold:
0.594
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
+
ContextFold vs PPfold(seed)
Matthews Correlation Coefficient ContextFold:
0.611
PPfold(seed):
0.218
Sensitivity ContextFold:
0.588
PPfold(seed):
0.076
Positive Predictive Value ContextFold:
0.643
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
?
ContextFold vs CMfinder(seed)
Matthews Correlation Coefficient ContextFold:
N/A
CMfinder(seed):
N/A
Sensitivity ContextFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value ContextFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
ContextFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient ContextFold:
0.899
PETfold_2.0(seed):
0.831
Sensitivity ContextFold:
0.871
PETfold_2.0(seed):
0.806
Positive Predictive Value ContextFold:
0.931
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
ContextFold vs DAFS(20)
Matthews Correlation Coefficient ContextFold:
N/A
DAFS(20):
N/A
Sensitivity ContextFold:
N/A
DAFS(20):
N/A
Positive Predictive Value ContextFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
ContextFold vs PETfold_2.0(20)
Matthews Correlation Coefficient ContextFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity ContextFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value ContextFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
ContextFold vs CMfinder(20)
Matthews Correlation Coefficient ContextFold:
0.585
CMfinder(20):
0.580
Sensitivity ContextFold:
0.612
CMfinder(20):
0.500
Positive Predictive Value ContextFold:
0.566
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
ContextFold vs CRWrnafold
Matthews Correlation Coefficient ContextFold:
0.662
CRWrnafold:
0.473
Sensitivity ContextFold:
0.608
CRWrnafold:
0.485
Positive Predictive Value ContextFold:
0.731
CRWrnafold:
0.477
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
ContextFold vs DAFS(seed)
Matthews Correlation Coefficient ContextFold:
N/A
DAFS(seed):
N/A
Sensitivity ContextFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value ContextFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
ContextFold vs Mastr(seed)
Matthews Correlation Coefficient ContextFold:
0.611
Mastr(seed):
0.056
Sensitivity ContextFold:
0.588
Mastr(seed):
0.009
Positive Predictive Value ContextFold:
0.643
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.84041289224e-08
|
IPknot |
18
CentroidAlifold(seed) vs IPknot
Matthews Correlation Coefficient CentroidAlifold(seed):
0.811
IPknot:
0.700
Sensitivity CentroidAlifold(seed):
0.711
IPknot:
0.683
Positive Predictive Value CentroidAlifold(seed):
0.927
IPknot:
0.718
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
12
CentroidAlifold(20) vs IPknot
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
IPknot:
0.536
Sensitivity CentroidAlifold(20):
0.598
IPknot:
0.525
Positive Predictive Value CentroidAlifold(20):
0.852
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.26497248087e-08
|
16
PETfold_pre2.0(seed) vs IPknot
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
IPknot:
0.692
Sensitivity PETfold_pre2.0(seed):
0.802
IPknot:
0.678
Positive Predictive Value PETfold_pre2.0(seed):
0.863
IPknot:
0.707
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.42071836373e-08
|
16
RNAalifold(seed) vs IPknot
Matthews Correlation Coefficient RNAalifold(seed):
0.764
IPknot:
0.709
Sensitivity RNAalifold(seed):
0.667
IPknot:
0.690
Positive Predictive Value RNAalifold(seed):
0.876
IPknot:
0.729
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 5.81039766894e-08
|
12
RNAalifold(20) vs IPknot
Matthews Correlation Coefficient RNAalifold(20):
0.664
IPknot:
0.536
Sensitivity RNAalifold(20):
0.618
IPknot:
0.525
Positive Predictive Value RNAalifold(20):
0.721
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
17
MXScarna(seed) vs IPknot
Matthews Correlation Coefficient MXScarna(seed):
0.732
IPknot:
0.704
Sensitivity MXScarna(seed):
0.692
IPknot:
0.687
Positive Predictive Value MXScarna(seed):
0.776
IPknot:
0.723
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.71184344176e-05
|
24
IPknot vs CentroidFold
Matthews Correlation Coefficient IPknot:
0.600
CentroidFold:
0.564
Sensitivity IPknot:
0.560
CentroidFold:
0.537
Positive Predictive Value IPknot:
0.644
CentroidFold:
0.593
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
12
PPfold(20) vs IPknot
Matthews Correlation Coefficient PPfold(20):
0.668
IPknot:
0.536
Sensitivity PPfold(20):
0.614
IPknot:
0.525
Positive Predictive Value PPfold(20):
0.733
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.11142658008e-08
|
12
TurboFold(20) vs IPknot
Matthews Correlation Coefficient TurboFold(20):
0.636
IPknot:
0.536
Sensitivity TurboFold(20):
0.629
IPknot:
0.525
Positive Predictive Value TurboFold(20):
0.649
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
12
RNASampler(20) vs IPknot
Matthews Correlation Coefficient RNASampler(20):
0.628
IPknot:
0.536
Sensitivity RNASampler(20):
0.583
IPknot:
0.525
Positive Predictive Value RNASampler(20):
0.683
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.5281770229e-09
|
12
MXScarna(20) vs IPknot
Matthews Correlation Coefficient MXScarna(20):
0.600
IPknot:
0.536
Sensitivity MXScarna(20):
0.568
IPknot:
0.525
Positive Predictive Value MXScarna(20):
0.642
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
22
ContextFold vs IPknot
Matthews Correlation Coefficient ContextFold:
0.596
IPknot:
0.590
Sensitivity ContextFold:
0.588
IPknot:
0.551
Positive Predictive Value ContextFold:
0.604
IPknot:
0.633
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 0.00498321506716
|
|
+
IPknot vs Contrafold
Matthews Correlation Coefficient IPknot:
0.600
Contrafold:
0.546
Sensitivity IPknot:
0.560
Contrafold:
0.555
Positive Predictive Value IPknot:
0.644
Contrafold:
0.539
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
-
Carnac(20) vs IPknot
Matthews Correlation Coefficient Carnac(20):
0.585
IPknot:
0.536
Sensitivity Carnac(20):
0.413
IPknot:
0.525
Positive Predictive Value Carnac(20):
0.836
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
-
Murlet(20) vs IPknot
Matthews Correlation Coefficient Murlet(20):
0.576
IPknot:
0.536
Sensitivity Murlet(20):
0.521
IPknot:
0.525
Positive Predictive Value Murlet(20):
0.646
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
-
PETfold_pre2.0(20) vs IPknot
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
IPknot:
0.470
Sensitivity PETfold_pre2.0(20):
0.597
IPknot:
0.466
Positive Predictive Value PETfold_pre2.0(20):
0.654
IPknot:
0.482
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.9460272886e-09
|
+
IPknot vs Sfold
Matthews Correlation Coefficient IPknot:
0.600
Sfold:
0.513
Sensitivity IPknot:
0.560
Sfold:
0.517
Positive Predictive Value IPknot:
0.644
Sfold:
0.509
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
IPknot vs Pknots
Matthews Correlation Coefficient IPknot:
0.637
Pknots:
0.597
Sensitivity IPknot:
0.613
Pknots:
0.632
Positive Predictive Value IPknot:
0.672
Pknots:
0.574
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 6.38150542963e-08
|
+
IPknot vs MaxExpect
Matthews Correlation Coefficient IPknot:
0.600
MaxExpect:
0.511
Sensitivity IPknot:
0.560
MaxExpect:
0.525
Positive Predictive Value IPknot:
0.644
MaxExpect:
0.500
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
IPknot vs TurboFold(seed)
Matthews Correlation Coefficient IPknot:
0.619
TurboFold(seed):
0.610
Sensitivity IPknot:
0.595
TurboFold(seed):
0.598
Positive Predictive Value IPknot:
0.652
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.47747102805e-06
|
+
IPknot vs PknotsRG
Matthews Correlation Coefficient IPknot:
0.518
PknotsRG:
0.492
Sensitivity IPknot:
0.468
PknotsRG:
0.531
Positive Predictive Value IPknot:
0.574
PknotsRG:
0.458
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.41251352392e-08
|
+
IPknot vs Cylofold
Matthews Correlation Coefficient IPknot:
0.702
Cylofold:
0.639
Sensitivity IPknot:
0.663
Cylofold:
0.615
Positive Predictive Value IPknot:
0.755
Cylofold:
0.678
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
+
IPknot vs CentroidHomfold‑LAST
Matthews Correlation Coefficient IPknot:
0.622
CentroidHomfold‑LAST:
0.577
Sensitivity IPknot:
0.605
CentroidHomfold‑LAST:
0.565
Positive Predictive Value IPknot:
0.649
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
+
IPknot vs RNASLOpt
Matthews Correlation Coefficient IPknot:
0.615
RNASLOpt:
0.558
Sensitivity IPknot:
0.594
RNASLOpt:
0.555
Positive Predictive Value IPknot:
0.646
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
+
IPknot vs McQFold
Matthews Correlation Coefficient IPknot:
0.600
McQFold:
0.463
Sensitivity IPknot:
0.560
McQFold:
0.478
Positive Predictive Value IPknot:
0.644
McQFold:
0.449
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
+
IPknot vs ProbKnot
Matthews Correlation Coefficient IPknot:
0.600
ProbKnot:
0.508
Sensitivity IPknot:
0.560
ProbKnot:
0.530
Positive Predictive Value IPknot:
0.644
ProbKnot:
0.488
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
IPknot vs UNAFold
Matthews Correlation Coefficient IPknot:
0.600
UNAFold:
0.486
Sensitivity IPknot:
0.560
UNAFold:
0.511
Positive Predictive Value IPknot:
0.644
UNAFold:
0.463
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
IPknot vs HotKnots
Matthews Correlation Coefficient IPknot:
0.637
HotKnots:
0.543
Sensitivity IPknot:
0.613
HotKnots:
0.587
Positive Predictive Value IPknot:
0.672
HotKnots:
0.515
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
+
IPknot vs RNAshapes
Matthews Correlation Coefficient IPknot:
0.637
RNAshapes:
0.542
Sensitivity IPknot:
0.613
RNAshapes:
0.563
Positive Predictive Value IPknot:
0.672
RNAshapes:
0.533
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
IPknot vs RNAfold
Matthews Correlation Coefficient IPknot:
0.600
RNAfold:
0.488
Sensitivity IPknot:
0.560
RNAfold:
0.516
Positive Predictive Value IPknot:
0.644
RNAfold:
0.463
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
IPknot vs Afold
Matthews Correlation Coefficient IPknot:
0.442
Afold:
0.394
Sensitivity IPknot:
0.384
Afold:
0.429
Positive Predictive Value IPknot:
0.510
Afold:
0.363
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62930789924e-09
|
+
IPknot vs RSpredict(20)
Matthews Correlation Coefficient IPknot:
0.536
RSpredict(20):
0.515
Sensitivity IPknot:
0.525
RSpredict(20):
0.486
Positive Predictive Value IPknot:
0.557
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.17141857566e-06
|
+
IPknot vs Multilign(seed)
Matthews Correlation Coefficient IPknot:
0.715
Multilign(seed):
0.658
Sensitivity IPknot:
0.665
Multilign(seed):
0.608
Positive Predictive Value IPknot:
0.776
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
+
IPknot vs RNAsubopt
Matthews Correlation Coefficient IPknot:
0.637
RNAsubopt:
0.540
Sensitivity IPknot:
0.613
RNAsubopt:
0.571
Positive Predictive Value IPknot:
0.672
RNAsubopt:
0.522
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
IPknot vs Fold
Matthews Correlation Coefficient IPknot:
0.600
Fold:
0.459
Sensitivity IPknot:
0.560
Fold:
0.489
Positive Predictive Value IPknot:
0.644
Fold:
0.433
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
IPknot vs Vsfold4
Matthews Correlation Coefficient IPknot:
0.608
Vsfold4:
0.504
Sensitivity IPknot:
0.596
Vsfold4:
0.497
Positive Predictive Value IPknot:
0.630
Vsfold4:
0.524
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
IPknot vs RNASampler(seed)
Matthews Correlation Coefficient IPknot:
0.598
RNASampler(seed):
0.497
Sensitivity IPknot:
0.583
RNASampler(seed):
0.412
Positive Predictive Value IPknot:
0.621
RNASampler(seed):
0.608
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
IPknot vs Multilign(20)
Matthews Correlation Coefficient IPknot:
0.541
Multilign(20):
0.517
Sensitivity IPknot:
0.548
Multilign(20):
0.530
Positive Predictive Value IPknot:
0.545
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.39318217748e-06
|
=
Mastr(20) vs IPknot
Matthews Correlation Coefficient Mastr(20):
0.544
IPknot:
0.536
Sensitivity Mastr(20):
0.363
IPknot:
0.525
Positive Predictive Value Mastr(20):
0.825
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.0268470467617
|
+
IPknot vs Murlet(seed)
Matthews Correlation Coefficient IPknot:
0.658
Murlet(seed):
0.493
Sensitivity IPknot:
0.632
Murlet(seed):
0.320
Positive Predictive Value IPknot:
0.693
Murlet(seed):
0.769
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
+
IPknot vs Vsfold5
Matthews Correlation Coefficient IPknot:
0.619
Vsfold5:
0.504
Sensitivity IPknot:
0.604
Vsfold5:
0.525
Positive Predictive Value IPknot:
0.645
Vsfold5:
0.498
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
IPknot vs Alterna
Matthews Correlation Coefficient IPknot:
0.640
Alterna:
0.568
Sensitivity IPknot:
0.585
Alterna:
0.549
Positive Predictive Value IPknot:
0.716
Alterna:
0.608
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
+
IPknot vs RDfolder
Matthews Correlation Coefficient IPknot:
0.635
RDfolder:
0.521
Sensitivity IPknot:
0.597
RDfolder:
0.458
Positive Predictive Value IPknot:
0.693
RDfolder:
0.612
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
+
IPknot vs MCFold
Matthews Correlation Coefficient IPknot:
0.592
MCFold:
0.404
Sensitivity IPknot:
0.566
MCFold:
0.453
Positive Predictive Value IPknot:
0.628
MCFold:
0.374
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 1.26497248087e-08
|
+
IPknot vs RNAwolf
Matthews Correlation Coefficient IPknot:
0.600
RNAwolf:
0.406
Sensitivity IPknot:
0.560
RNAwolf:
0.415
Positive Predictive Value IPknot:
0.644
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
IPknot vs RSpredict(seed)
Matthews Correlation Coefficient IPknot:
0.700
RSpredict(seed):
0.570
Sensitivity IPknot:
0.683
RSpredict(seed):
0.458
Positive Predictive Value IPknot:
0.718
RSpredict(seed):
0.711
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.73174208038e-08
|
+
IPknot vs Carnac(seed)
Matthews Correlation Coefficient IPknot:
0.709
Carnac(seed):
0.556
Sensitivity IPknot:
0.690
Carnac(seed):
0.332
Positive Predictive Value IPknot:
0.729
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
+
IPknot vs NanoFolder
Matthews Correlation Coefficient IPknot:
0.567
NanoFolder:
0.406
Sensitivity IPknot:
0.564
NanoFolder:
0.516
Positive Predictive Value IPknot:
0.580
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
+
IPknot vs PPfold(seed)
Matthews Correlation Coefficient IPknot:
0.644
PPfold(seed):
0.202
Sensitivity IPknot:
0.623
PPfold(seed):
0.066
Positive Predictive Value IPknot:
0.673
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
?
CMfinder(seed) vs IPknot
Matthews Correlation Coefficient CMfinder(seed):
N/A
IPknot:
N/A
Sensitivity CMfinder(seed):
N/A
IPknot:
N/A
Positive Predictive Value CMfinder(seed):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
IPknot vs PETfold_2.0(seed)
Matthews Correlation Coefficient IPknot:
0.967
PETfold_2.0(seed):
0.831
Sensitivity IPknot:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value IPknot:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
IPknot vs DAFS(20)
Matthews Correlation Coefficient IPknot:
N/A
DAFS(20):
N/A
Sensitivity IPknot:
N/A
DAFS(20):
N/A
Positive Predictive Value IPknot:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs IPknot
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
IPknot:
N/A
Sensitivity PETfold_2.0(20):
N/A
IPknot:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs IPknot
Matthews Correlation Coefficient CMfinder(20):
0.580
IPknot:
0.449
Sensitivity CMfinder(20):
0.500
IPknot:
0.490
Positive Predictive Value CMfinder(20):
0.681
IPknot:
0.421
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
IPknot vs CRWrnafold
Matthews Correlation Coefficient IPknot:
0.568
CRWrnafold:
0.502
Sensitivity IPknot:
0.541
CRWrnafold:
0.516
Positive Predictive Value IPknot:
0.610
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs IPknot
Matthews Correlation Coefficient DAFS(seed):
N/A
IPknot:
N/A
Sensitivity DAFS(seed):
N/A
IPknot:
N/A
Positive Predictive Value DAFS(seed):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
IPknot vs Mastr(seed)
Matthews Correlation Coefficient IPknot:
0.644
Mastr(seed):
0.052
Sensitivity IPknot:
0.623
Mastr(seed):
0.008
Positive Predictive Value IPknot:
0.673
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
Contrafold |
30
CentroidAlifold(seed) vs Contrafold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Contrafold:
0.659
Sensitivity CentroidAlifold(seed):
0.672
Contrafold:
0.678
Positive Predictive Value CentroidAlifold(seed):
0.908
Contrafold:
0.642
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs Contrafold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Contrafold:
0.608
Sensitivity CentroidAlifold(20):
0.664
Contrafold:
0.621
Positive Predictive Value CentroidAlifold(20):
0.900
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
16
PETfold_pre2.0(seed) vs Contrafold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Contrafold:
0.669
Sensitivity PETfold_pre2.0(seed):
0.802
Contrafold:
0.680
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Contrafold:
0.660
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
25
RNAalifold(seed) vs Contrafold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
Contrafold:
0.670
Sensitivity RNAalifold(seed):
0.607
Contrafold:
0.687
Positive Predictive Value RNAalifold(seed):
0.872
Contrafold:
0.654
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 6.38150542963e-08
|
21
RNAalifold(20) vs Contrafold
Matthews Correlation Coefficient RNAalifold(20):
0.733
Contrafold:
0.608
Sensitivity RNAalifold(20):
0.654
Contrafold:
0.621
Positive Predictive Value RNAalifold(20):
0.826
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
29
MXScarna(seed) vs Contrafold
Matthews Correlation Coefficient MXScarna(seed):
0.739
Contrafold:
0.658
Sensitivity MXScarna(seed):
0.698
Contrafold:
0.676
Positive Predictive Value MXScarna(seed):
0.784
Contrafold:
0.641
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
42
CentroidFold vs Contrafold
Matthews Correlation Coefficient CentroidFold:
0.611
Contrafold:
0.587
Sensitivity CentroidFold:
0.600
Contrafold:
0.613
Positive Predictive Value CentroidFold:
0.622
Contrafold:
0.563
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs Contrafold
Matthews Correlation Coefficient PPfold(20):
0.668
Contrafold:
0.545
Sensitivity PPfold(20):
0.614
Contrafold:
0.568
Positive Predictive Value PPfold(20):
0.733
Contrafold:
0.533
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.32677072069e-08
|
12
TurboFold(20) vs Contrafold
Matthews Correlation Coefficient TurboFold(20):
0.636
Contrafold:
0.545
Sensitivity TurboFold(20):
0.629
Contrafold:
0.568
Positive Predictive Value TurboFold(20):
0.649
Contrafold:
0.533
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
21
RNASampler(20) vs Contrafold
Matthews Correlation Coefficient RNASampler(20):
0.692
Contrafold:
0.608
Sensitivity RNASampler(20):
0.621
Contrafold:
0.621
Positive Predictive Value RNASampler(20):
0.776
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
21
MXScarna(20) vs Contrafold
Matthews Correlation Coefficient MXScarna(20):
0.678
Contrafold:
0.608
Sensitivity MXScarna(20):
0.640
Contrafold:
0.621
Positive Predictive Value MXScarna(20):
0.724
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
22
ContextFold vs Contrafold
Matthews Correlation Coefficient ContextFold:
0.596
Contrafold:
0.537
Sensitivity ContextFold:
0.588
Contrafold:
0.546
Positive Predictive Value ContextFold:
0.604
Contrafold:
0.529
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.51223576774e-08
|
24
IPknot vs Contrafold
Matthews Correlation Coefficient IPknot:
0.600
Contrafold:
0.546
Sensitivity IPknot:
0.560
Contrafold:
0.555
Positive Predictive Value IPknot:
0.644
Contrafold:
0.539
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
|
-
Carnac(20) vs Contrafold
Matthews Correlation Coefficient Carnac(20):
0.641
Contrafold:
0.608
Sensitivity Carnac(20):
0.456
Contrafold:
0.621
Positive Predictive Value Carnac(20):
0.908
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 6.32937386918e-08
|
-
Murlet(20) vs Contrafold
Matthews Correlation Coefficient Murlet(20):
0.625
Contrafold:
0.608
Sensitivity Murlet(20):
0.530
Contrafold:
0.621
Positive Predictive Value Murlet(20):
0.744
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.24730312891e-07
|
-
PETfold_pre2.0(20) vs Contrafold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Contrafold:
0.492
Sensitivity PETfold_pre2.0(20):
0.597
Contrafold:
0.519
Positive Predictive Value PETfold_pre2.0(20):
0.654
Contrafold:
0.476
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
+
Contrafold vs Sfold
Matthews Correlation Coefficient Contrafold:
0.610
Sfold:
0.521
Sensitivity Contrafold:
0.632
Sfold:
0.524
Positive Predictive Value Contrafold:
0.589
Sfold:
0.519
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Pknots
Matthews Correlation Coefficient Contrafold:
0.689
Pknots:
0.648
Sensitivity Contrafold:
0.692
Pknots:
0.676
Positive Predictive Value Contrafold:
0.696
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs MaxExpect
Matthews Correlation Coefficient Contrafold:
0.615
MaxExpect:
0.589
Sensitivity Contrafold:
0.628
MaxExpect:
0.604
Positive Predictive Value Contrafold:
0.603
MaxExpect:
0.576
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
TurboFold(seed) vs Contrafold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Contrafold:
0.601
Sensitivity TurboFold(seed):
0.598
Contrafold:
0.605
Positive Predictive Value TurboFold(seed):
0.630
Contrafold:
0.607
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 7.17108686704e-05
|
+
Contrafold vs PknotsRG
Matthews Correlation Coefficient Contrafold:
0.599
PknotsRG:
0.481
Sensitivity Contrafold:
0.622
PknotsRG:
0.523
Positive Predictive Value Contrafold:
0.577
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Cylofold
Matthews Correlation Coefficient Contrafold:
0.712
Cylofold:
0.669
Sensitivity Contrafold:
0.708
Cylofold:
0.648
Positive Predictive Value Contrafold:
0.725
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
Contrafold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Contrafold:
0.611
CentroidHomfold‑LAST:
0.577
Sensitivity Contrafold:
0.620
CentroidHomfold‑LAST:
0.565
Positive Predictive Value Contrafold:
0.613
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
+
Contrafold vs RNASLOpt
Matthews Correlation Coefficient Contrafold:
0.599
RNASLOpt:
0.558
Sensitivity Contrafold:
0.609
RNASLOpt:
0.555
Positive Predictive Value Contrafold:
0.600
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
+
Contrafold vs McQFold
Matthews Correlation Coefficient Contrafold:
0.610
McQFold:
0.417
Sensitivity Contrafold:
0.632
McQFold:
0.398
Positive Predictive Value Contrafold:
0.589
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs ProbKnot
Matthews Correlation Coefficient Contrafold:
0.554
ProbKnot:
0.524
Sensitivity Contrafold:
0.572
ProbKnot:
0.554
Positive Predictive Value Contrafold:
0.538
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs UNAFold
Matthews Correlation Coefficient Contrafold:
0.610
UNAFold:
0.496
Sensitivity Contrafold:
0.632
UNAFold:
0.530
Positive Predictive Value Contrafold:
0.589
UNAFold:
0.464
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs HotKnots
Matthews Correlation Coefficient Contrafold:
0.649
HotKnots:
0.588
Sensitivity Contrafold:
0.666
HotKnots:
0.627
Positive Predictive Value Contrafold:
0.638
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs RNAshapes
Matthews Correlation Coefficient Contrafold:
0.649
RNAshapes:
0.585
Sensitivity Contrafold:
0.666
RNAshapes:
0.606
Positive Predictive Value Contrafold:
0.638
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs RNAfold
Matthews Correlation Coefficient Contrafold:
0.610
RNAfold:
0.492
Sensitivity Contrafold:
0.632
RNAfold:
0.531
Positive Predictive Value Contrafold:
0.589
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Afold
Matthews Correlation Coefficient Contrafold:
0.585
Afold:
0.473
Sensitivity Contrafold:
0.610
Afold:
0.516
Positive Predictive Value Contrafold:
0.562
Afold:
0.434
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs RSpredict(20)
Matthews Correlation Coefficient Contrafold:
0.608
RSpredict(20):
0.585
Sensitivity Contrafold:
0.621
RSpredict(20):
0.534
Positive Predictive Value Contrafold:
0.601
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.90849426981e-06
|
+
Contrafold vs Multilign(seed)
Matthews Correlation Coefficient Contrafold:
0.692
Multilign(seed):
0.658
Sensitivity Contrafold:
0.673
Multilign(seed):
0.608
Positive Predictive Value Contrafold:
0.720
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.12364306555e-08
|
+
Contrafold vs RNAsubopt
Matthews Correlation Coefficient Contrafold:
0.649
RNAsubopt:
0.581
Sensitivity Contrafold:
0.666
RNAsubopt:
0.612
Positive Predictive Value Contrafold:
0.638
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Fold
Matthews Correlation Coefficient Contrafold:
0.563
Fold:
0.490
Sensitivity Contrafold:
0.580
Fold:
0.523
Positive Predictive Value Contrafold:
0.547
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Vsfold4
Matthews Correlation Coefficient Contrafold:
0.645
Vsfold4:
0.553
Sensitivity Contrafold:
0.665
Vsfold4:
0.549
Positive Predictive Value Contrafold:
0.632
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs RNASampler(seed)
Matthews Correlation Coefficient Contrafold:
0.612
RNASampler(seed):
0.563
Sensitivity Contrafold:
0.626
RNASampler(seed):
0.472
Positive Predictive Value Contrafold:
0.605
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
+
Contrafold vs Multilign(20)
Matthews Correlation Coefficient Contrafold:
0.567
Multilign(20):
0.517
Sensitivity Contrafold:
0.596
Multilign(20):
0.530
Positive Predictive Value Contrafold:
0.550
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.52220743227e-08
|
+
Contrafold vs Mastr(20)
Matthews Correlation Coefficient Contrafold:
0.608
Mastr(20):
0.508
Sensitivity Contrafold:
0.621
Mastr(20):
0.329
Positive Predictive Value Contrafold:
0.601
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
Contrafold vs Murlet(seed)
Matthews Correlation Coefficient Contrafold:
0.711
Murlet(seed):
0.534
Sensitivity Contrafold:
0.710
Murlet(seed):
0.349
Positive Predictive Value Contrafold:
0.720
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Contrafold vs Vsfold5
Matthews Correlation Coefficient Contrafold:
0.647
Vsfold5:
0.523
Sensitivity Contrafold:
0.666
Vsfold5:
0.527
Positive Predictive Value Contrafold:
0.635
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs Alterna
Matthews Correlation Coefficient Contrafold:
0.757
Alterna:
0.647
Sensitivity Contrafold:
0.737
Alterna:
0.636
Positive Predictive Value Contrafold:
0.789
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
+
Contrafold vs RDfolder
Matthews Correlation Coefficient Contrafold:
0.734
RDfolder:
0.569
Sensitivity Contrafold:
0.722
RDfolder:
0.510
Positive Predictive Value Contrafold:
0.759
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Contrafold vs MCFold
Matthews Correlation Coefficient Contrafold:
0.639
MCFold:
0.465
Sensitivity Contrafold:
0.646
MCFold:
0.510
Positive Predictive Value Contrafold:
0.643
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Contrafold vs RNAwolf
Matthews Correlation Coefficient Contrafold:
0.546
RNAwolf:
0.406
Sensitivity Contrafold:
0.555
RNAwolf:
0.415
Positive Predictive Value Contrafold:
0.539
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Contrafold vs RSpredict(seed)
Matthews Correlation Coefficient Contrafold:
0.659
RSpredict(seed):
0.498
Sensitivity Contrafold:
0.678
RSpredict(seed):
0.359
Positive Predictive Value Contrafold:
0.642
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
Contrafold vs Carnac(seed)
Matthews Correlation Coefficient Contrafold:
0.709
Carnac(seed):
0.492
Sensitivity Contrafold:
0.713
Carnac(seed):
0.259
Positive Predictive Value Contrafold:
0.707
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Contrafold vs NanoFolder
Matthews Correlation Coefficient Contrafold:
0.552
NanoFolder:
0.406
Sensitivity Contrafold:
0.572
NanoFolder:
0.516
Positive Predictive Value Contrafold:
0.544
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
+
Contrafold vs PPfold(seed)
Matthews Correlation Coefficient Contrafold:
0.642
PPfold(seed):
0.202
Sensitivity Contrafold:
0.649
PPfold(seed):
0.066
Positive Predictive Value Contrafold:
0.644
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
?
Contrafold vs CMfinder(seed)
Matthews Correlation Coefficient Contrafold:
N/A
CMfinder(seed):
N/A
Sensitivity Contrafold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Contrafold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Contrafold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Contrafold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Contrafold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Contrafold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Contrafold vs DAFS(20)
Matthews Correlation Coefficient Contrafold:
N/A
DAFS(20):
N/A
Sensitivity Contrafold:
N/A
DAFS(20):
N/A
Positive Predictive Value Contrafold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Contrafold vs PETfold_2.0(20)
Matthews Correlation Coefficient Contrafold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Contrafold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Contrafold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Contrafold
Matthews Correlation Coefficient CMfinder(20):
0.580
Contrafold:
0.498
Sensitivity CMfinder(20):
0.500
Contrafold:
0.561
Positive Predictive Value CMfinder(20):
0.681
Contrafold:
0.451
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Contrafold vs CRWrnafold
Matthews Correlation Coefficient Contrafold:
0.594
CRWrnafold:
0.502
Sensitivity Contrafold:
0.579
CRWrnafold:
0.516
Positive Predictive Value Contrafold:
0.622
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Contrafold
Matthews Correlation Coefficient DAFS(seed):
N/A
Contrafold:
N/A
Sensitivity DAFS(seed):
N/A
Contrafold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Contrafold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Contrafold vs Mastr(seed)
Matthews Correlation Coefficient Contrafold:
0.634
Mastr(seed):
0.036
Sensitivity Contrafold:
0.658
Mastr(seed):
0.004
Positive Predictive Value Contrafold:
0.618
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
Carnac(20) |
21
CentroidAlifold(seed) vs Carnac(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Carnac(20):
0.641
Sensitivity CentroidAlifold(seed):
0.575
Carnac(20):
0.456
Positive Predictive Value CentroidAlifold(seed):
0.930
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
21
CentroidAlifold(20) vs Carnac(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Carnac(20):
0.641
Sensitivity CentroidAlifold(20):
0.664
Carnac(20):
0.456
Positive Predictive Value CentroidAlifold(20):
0.900
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PETfold_pre2.0(seed) vs Carnac(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Carnac(20):
0.516
Sensitivity PETfold_pre2.0(seed):
0.752
Carnac(20):
0.345
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
17
RNAalifold(seed) vs Carnac(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Carnac(20):
0.609
Sensitivity RNAalifold(seed):
0.487
Carnac(20):
0.403
Positive Predictive Value RNAalifold(seed):
0.927
Carnac(20):
0.926
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
21
RNAalifold(20) vs Carnac(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Carnac(20):
0.641
Sensitivity RNAalifold(20):
0.654
Carnac(20):
0.456
Positive Predictive Value RNAalifold(20):
0.826
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
MXScarna(seed) vs Carnac(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Carnac(20):
0.631
Sensitivity MXScarna(seed):
0.646
Carnac(20):
0.440
Positive Predictive Value MXScarna(seed):
0.779
Carnac(20):
0.911
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
21
CentroidFold vs Carnac(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Carnac(20):
0.641
Sensitivity CentroidFold:
0.649
Carnac(20):
0.456
Positive Predictive Value CentroidFold:
0.692
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.03081111858e-07
|
12
PPfold(20) vs Carnac(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Carnac(20):
0.585
Sensitivity PPfold(20):
0.614
Carnac(20):
0.413
Positive Predictive Value PPfold(20):
0.733
Carnac(20):
0.836
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
12
TurboFold(20) vs Carnac(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Carnac(20):
0.585
Sensitivity TurboFold(20):
0.629
Carnac(20):
0.413
Positive Predictive Value TurboFold(20):
0.649
Carnac(20):
0.836
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
21
RNASampler(20) vs Carnac(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Carnac(20):
0.641
Sensitivity RNASampler(20):
0.621
Carnac(20):
0.456
Positive Predictive Value RNASampler(20):
0.776
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
MXScarna(20) vs Carnac(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Carnac(20):
0.641
Sensitivity MXScarna(20):
0.640
Carnac(20):
0.456
Positive Predictive Value MXScarna(20):
0.724
Carnac(20):
0.908
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
10
ContextFold vs Carnac(20)
Matthews Correlation Coefficient ContextFold:
0.558
Carnac(20):
0.516
Sensitivity ContextFold:
0.544
Carnac(20):
0.345
Positive Predictive Value ContextFold:
0.580
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
12
Carnac(20) vs IPknot
Matthews Correlation Coefficient Carnac(20):
0.585
IPknot:
0.536
Sensitivity Carnac(20):
0.413
IPknot:
0.525
Positive Predictive Value Carnac(20):
0.836
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
21
Carnac(20) vs Contrafold
Matthews Correlation Coefficient Carnac(20):
0.641
Contrafold:
0.608
Sensitivity Carnac(20):
0.456
Contrafold:
0.621
Positive Predictive Value Carnac(20):
0.908
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 6.32937386918e-08
|
|
+
Carnac(20) vs Murlet(20)
Matthews Correlation Coefficient Carnac(20):
0.641
Murlet(20):
0.625
Sensitivity Carnac(20):
0.456
Murlet(20):
0.530
Positive Predictive Value Carnac(20):
0.908
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
-
PETfold_pre2.0(20) vs Carnac(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Carnac(20):
0.516
Sensitivity PETfold_pre2.0(20):
0.597
Carnac(20):
0.345
Positive Predictive Value PETfold_pre2.0(20):
0.654
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
+
Carnac(20) vs Sfold
Matthews Correlation Coefficient Carnac(20):
0.641
Sfold:
0.609
Sensitivity Carnac(20):
0.456
Sfold:
0.583
Positive Predictive Value Carnac(20):
0.908
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.15842348871e-07
|
+
Carnac(20) vs Pknots
Matthews Correlation Coefficient Carnac(20):
0.663
Pknots:
0.590
Sensitivity Carnac(20):
0.486
Pknots:
0.630
Positive Predictive Value Carnac(20):
0.911
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Carnac(20) vs MaxExpect
Matthews Correlation Coefficient Carnac(20):
0.641
MaxExpect:
0.608
Sensitivity Carnac(20):
0.456
MaxExpect:
0.611
Positive Predictive Value Carnac(20):
0.908
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
TurboFold(seed) vs Carnac(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
Carnac(20):
0.546
Sensitivity TurboFold(seed):
0.554
Carnac(20):
0.349
Positive Predictive Value TurboFold(seed):
0.560
Carnac(20):
0.861
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs PknotsRG
Matthews Correlation Coefficient Carnac(20):
0.641
PknotsRG:
0.598
Sensitivity Carnac(20):
0.456
PknotsRG:
0.633
Positive Predictive Value Carnac(20):
0.908
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
Cylofold vs Carnac(20)
Matthews Correlation Coefficient Cylofold:
0.752
Carnac(20):
0.643
Sensitivity Cylofold:
0.734
Carnac(20):
0.472
Positive Predictive Value Cylofold:
0.778
Carnac(20):
0.885
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Carnac(20):
0.608
CentroidHomfold‑LAST:
0.572
Sensitivity Carnac(20):
0.439
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Carnac(20):
0.849
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.79203144115e-08
|
+
Carnac(20) vs RNASLOpt
Matthews Correlation Coefficient Carnac(20):
0.516
RNASLOpt:
0.480
Sensitivity Carnac(20):
0.345
RNASLOpt:
0.500
Positive Predictive Value Carnac(20):
0.780
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.54877389386e-08
|
+
Carnac(20) vs McQFold
Matthews Correlation Coefficient Carnac(20):
0.641
McQFold:
0.613
Sensitivity Carnac(20):
0.456
McQFold:
0.628
Positive Predictive Value Carnac(20):
0.908
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.39132889808e-08
|
+
Carnac(20) vs ProbKnot
Matthews Correlation Coefficient Carnac(20):
0.583
ProbKnot:
0.562
Sensitivity Carnac(20):
0.391
ProbKnot:
0.600
Positive Predictive Value Carnac(20):
0.874
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.54671126599e-08
|
+
Carnac(20) vs UNAFold
Matthews Correlation Coefficient Carnac(20):
0.641
UNAFold:
0.581
Sensitivity Carnac(20):
0.456
UNAFold:
0.602
Positive Predictive Value Carnac(20):
0.908
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
+
Carnac(20) vs HotKnots
Matthews Correlation Coefficient Carnac(20):
0.641
HotKnots:
0.548
Sensitivity Carnac(20):
0.456
HotKnots:
0.585
Positive Predictive Value Carnac(20):
0.908
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
Carnac(20) vs RNAshapes
Matthews Correlation Coefficient Carnac(20):
0.641
RNAshapes:
0.576
Sensitivity Carnac(20):
0.456
RNAshapes:
0.596
Positive Predictive Value Carnac(20):
0.908
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
Carnac(20) vs RNAfold
Matthews Correlation Coefficient Carnac(20):
0.641
RNAfold:
0.572
Sensitivity Carnac(20):
0.456
RNAfold:
0.601
Positive Predictive Value Carnac(20):
0.908
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Carnac(20) vs Afold
Matthews Correlation Coefficient Carnac(20):
0.648
Afold:
0.547
Sensitivity Carnac(20):
0.443
Afold:
0.579
Positive Predictive Value Carnac(20):
0.953
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.01312059156e-09
|
+
Carnac(20) vs RSpredict(20)
Matthews Correlation Coefficient Carnac(20):
0.641
RSpredict(20):
0.585
Sensitivity Carnac(20):
0.456
RSpredict(20):
0.534
Positive Predictive Value Carnac(20):
0.908
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
?
Multilign(seed) vs Carnac(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
Carnac(20):
0.616
Sensitivity Multilign(seed):
0.587
Carnac(20):
0.444
Positive Predictive Value Multilign(seed):
0.673
Carnac(20):
0.862
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs RNAsubopt
Matthews Correlation Coefficient Carnac(20):
0.641
RNAsubopt:
0.564
Sensitivity Carnac(20):
0.456
RNAsubopt:
0.596
Positive Predictive Value Carnac(20):
0.908
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
Carnac(20) vs Fold
Matthews Correlation Coefficient Carnac(20):
0.583
Fold:
0.526
Sensitivity Carnac(20):
0.391
Fold:
0.562
Positive Predictive Value Carnac(20):
0.874
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
+
Carnac(20) vs Vsfold4
Matthews Correlation Coefficient Carnac(20):
0.653
Vsfold4:
0.537
Sensitivity Carnac(20):
0.469
Vsfold4:
0.531
Positive Predictive Value Carnac(20):
0.915
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
Carnac(20) vs RNASampler(seed)
Matthews Correlation Coefficient Carnac(20):
0.644
RNASampler(seed):
0.576
Sensitivity Carnac(20):
0.448
RNASampler(seed):
0.525
Positive Predictive Value Carnac(20):
0.931
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs Multilign(20)
Matthews Correlation Coefficient Carnac(20):
0.608
Multilign(20):
0.517
Sensitivity Carnac(20):
0.439
Multilign(20):
0.530
Positive Predictive Value Carnac(20):
0.849
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.1568170475e-08
|
+
Carnac(20) vs Mastr(20)
Matthews Correlation Coefficient Carnac(20):
0.641
Mastr(20):
0.508
Sensitivity Carnac(20):
0.456
Mastr(20):
0.329
Positive Predictive Value Carnac(20):
0.908
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Carnac(20) vs Murlet(seed)
Matthews Correlation Coefficient Carnac(20):
0.629
Murlet(seed):
0.564
Sensitivity Carnac(20):
0.426
Murlet(seed):
0.366
Positive Predictive Value Carnac(20):
0.935
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
+
Carnac(20) vs Vsfold5
Matthews Correlation Coefficient Carnac(20):
0.653
Vsfold5:
0.493
Sensitivity Carnac(20):
0.469
Vsfold5:
0.493
Positive Predictive Value Carnac(20):
0.915
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
?
Carnac(20) vs Alterna
Matthews Correlation Coefficient Carnac(20):
0.828
Alterna:
0.593
Sensitivity Carnac(20):
0.702
Alterna:
0.596
Positive Predictive Value Carnac(20):
0.984
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs RDfolder
Matthews Correlation Coefficient Carnac(20):
0.745
RDfolder:
0.641
Sensitivity Carnac(20):
0.619
RDfolder:
0.585
Positive Predictive Value Carnac(20):
0.908
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
+
Carnac(20) vs MCFold
Matthews Correlation Coefficient Carnac(20):
0.683
MCFold:
0.453
Sensitivity Carnac(20):
0.510
MCFold:
0.507
Positive Predictive Value Carnac(20):
0.922
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.86595104665e-08
|
+
Carnac(20) vs RNAwolf
Matthews Correlation Coefficient Carnac(20):
0.585
RNAwolf:
0.396
Sensitivity Carnac(20):
0.413
RNAwolf:
0.425
Positive Predictive Value Carnac(20):
0.836
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
+
Carnac(20) vs RSpredict(seed)
Matthews Correlation Coefficient Carnac(20):
0.641
RSpredict(seed):
0.296
Sensitivity Carnac(20):
0.456
RSpredict(seed):
0.148
Positive Predictive Value Carnac(20):
0.908
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Carnac(20) vs Carnac(seed)
Matthews Correlation Coefficient Carnac(20):
0.629
Carnac(seed):
0.000
Sensitivity Carnac(20):
0.426
Carnac(seed):
0.000
Positive Predictive Value Carnac(20):
0.935
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
?
Carnac(20) vs NanoFolder
Matthews Correlation Coefficient Carnac(20):
0.551
NanoFolder:
0.314
Sensitivity Carnac(20):
0.376
NanoFolder:
0.427
Positive Predictive Value Carnac(20):
0.815
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(20) vs PPfold(seed)
Matthews Correlation Coefficient Carnac(20):
0.585
PPfold(seed):
0.073
Sensitivity Carnac(20):
0.413
PPfold(seed):
0.019
Positive Predictive Value Carnac(20):
0.836
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
?
CMfinder(seed) vs Carnac(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Carnac(20):
N/A
Sensitivity CMfinder(seed):
N/A
Carnac(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Carnac(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Carnac(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Carnac(20) vs DAFS(20)
Matthews Correlation Coefficient Carnac(20):
N/A
DAFS(20):
N/A
Sensitivity Carnac(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Carnac(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Carnac(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Carnac(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Carnac(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Carnac(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Carnac(20) vs CMfinder(20)
Matthews Correlation Coefficient Carnac(20):
0.619
CMfinder(20):
0.580
Sensitivity Carnac(20):
0.469
CMfinder(20):
0.500
Positive Predictive Value Carnac(20):
0.821
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Carnac(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Carnac(20):
0.510
Sensitivity CRWrnafold:
0.611
Carnac(20):
0.324
Positive Predictive Value CRWrnafold:
0.584
Carnac(20):
0.814
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Carnac(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
Carnac(20):
N/A
Sensitivity DAFS(seed):
N/A
Carnac(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
Carnac(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Carnac(20) vs Mastr(seed)
Matthews Correlation Coefficient Carnac(20):
0.641
Mastr(seed):
0.000
Sensitivity Carnac(20):
0.456
Mastr(seed):
0.000
Positive Predictive Value Carnac(20):
0.908
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
Murlet(20) |
21
CentroidAlifold(seed) vs Murlet(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Murlet(20):
0.625
Sensitivity CentroidAlifold(seed):
0.575
Murlet(20):
0.530
Positive Predictive Value CentroidAlifold(seed):
0.930
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.77766983502e-08
|
21
CentroidAlifold(20) vs Murlet(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Murlet(20):
0.625
Sensitivity CentroidAlifold(20):
0.664
Murlet(20):
0.530
Positive Predictive Value CentroidAlifold(20):
0.900
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
10
PETfold_pre2.0(seed) vs Murlet(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Murlet(20):
0.513
Sensitivity PETfold_pre2.0(seed):
0.752
Murlet(20):
0.461
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.40919803867e-08
|
17
RNAalifold(seed) vs Murlet(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Murlet(20):
0.592
Sensitivity RNAalifold(seed):
0.487
Murlet(20):
0.489
Positive Predictive Value RNAalifold(seed):
0.927
Murlet(20):
0.724
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
21
RNAalifold(20) vs Murlet(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Murlet(20):
0.625
Sensitivity RNAalifold(20):
0.654
Murlet(20):
0.530
Positive Predictive Value RNAalifold(20):
0.826
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
20
MXScarna(seed) vs Murlet(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Murlet(20):
0.617
Sensitivity MXScarna(seed):
0.646
Murlet(20):
0.520
Positive Predictive Value MXScarna(seed):
0.779
Murlet(20):
0.739
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
CentroidFold vs Murlet(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Murlet(20):
0.625
Sensitivity CentroidFold:
0.649
Murlet(20):
0.530
Positive Predictive Value CentroidFold:
0.692
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
12
PPfold(20) vs Murlet(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Murlet(20):
0.576
Sensitivity PPfold(20):
0.614
Murlet(20):
0.521
Positive Predictive Value PPfold(20):
0.733
Murlet(20):
0.646
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
12
TurboFold(20) vs Murlet(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Murlet(20):
0.576
Sensitivity TurboFold(20):
0.629
Murlet(20):
0.521
Positive Predictive Value TurboFold(20):
0.649
Murlet(20):
0.646
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.53980171438e-08
|
21
RNASampler(20) vs Murlet(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Murlet(20):
0.625
Sensitivity RNASampler(20):
0.621
Murlet(20):
0.530
Positive Predictive Value RNASampler(20):
0.776
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
21
MXScarna(20) vs Murlet(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Murlet(20):
0.625
Sensitivity MXScarna(20):
0.640
Murlet(20):
0.530
Positive Predictive Value MXScarna(20):
0.724
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
10
ContextFold vs Murlet(20)
Matthews Correlation Coefficient ContextFold:
0.558
Murlet(20):
0.513
Sensitivity ContextFold:
0.544
Murlet(20):
0.461
Positive Predictive Value ContextFold:
0.580
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.23882059035e-07
|
12
Murlet(20) vs IPknot
Matthews Correlation Coefficient Murlet(20):
0.576
IPknot:
0.536
Sensitivity Murlet(20):
0.521
IPknot:
0.525
Positive Predictive Value Murlet(20):
0.646
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
21
Murlet(20) vs Contrafold
Matthews Correlation Coefficient Murlet(20):
0.625
Contrafold:
0.608
Sensitivity Murlet(20):
0.530
Contrafold:
0.621
Positive Predictive Value Murlet(20):
0.744
Contrafold:
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.24730312891e-07
|
21
Carnac(20) vs Murlet(20)
Matthews Correlation Coefficient Carnac(20):
0.641
Murlet(20):
0.625
Sensitivity Carnac(20):
0.456
Murlet(20):
0.530
Positive Predictive Value Carnac(20):
0.908
Murlet(20):
0.744
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
|
-
PETfold_pre2.0(20) vs Murlet(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Murlet(20):
0.513
Sensitivity PETfold_pre2.0(20):
0.597
Murlet(20):
0.461
Positive Predictive Value PETfold_pre2.0(20):
0.654
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.08519761914e-09
|
+
Murlet(20) vs Sfold
Matthews Correlation Coefficient Murlet(20):
0.625
Sfold:
0.609
Sensitivity Murlet(20):
0.530
Sfold:
0.583
Positive Predictive Value Murlet(20):
0.744
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.01433221554e-05
|
+
Murlet(20) vs Pknots
Matthews Correlation Coefficient Murlet(20):
0.653
Pknots:
0.590
Sensitivity Murlet(20):
0.570
Pknots:
0.630
Positive Predictive Value Murlet(20):
0.755
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
Murlet(20) vs MaxExpect
Matthews Correlation Coefficient Murlet(20):
0.625
MaxExpect:
0.608
Sensitivity Murlet(20):
0.530
MaxExpect:
0.611
Positive Predictive Value Murlet(20):
0.744
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.68553045316e-07
|
?
Murlet(20) vs TurboFold(seed)
Matthews Correlation Coefficient Murlet(20):
0.583
TurboFold(seed):
0.553
Sensitivity Murlet(20):
0.523
TurboFold(seed):
0.554
Positive Predictive Value Murlet(20):
0.658
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs PknotsRG
Matthews Correlation Coefficient Murlet(20):
0.625
PknotsRG:
0.598
Sensitivity Murlet(20):
0.530
PknotsRG:
0.633
Positive Predictive Value Murlet(20):
0.744
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.88703312273e-08
|
?
Cylofold vs Murlet(20)
Matthews Correlation Coefficient Cylofold:
0.752
Murlet(20):
0.674
Sensitivity Cylofold:
0.734
Murlet(20):
0.581
Positive Predictive Value Cylofold:
0.778
Murlet(20):
0.792
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Murlet(20):
0.595
CentroidHomfold‑LAST:
0.572
Sensitivity Murlet(20):
0.539
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Murlet(20):
0.667
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.03109540436e-07
|
+
Murlet(20) vs RNASLOpt
Matthews Correlation Coefficient Murlet(20):
0.513
RNASLOpt:
0.480
Sensitivity Murlet(20):
0.461
RNASLOpt:
0.500
Positive Predictive Value Murlet(20):
0.579
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 3.56259806697e-08
|
+
Murlet(20) vs McQFold
Matthews Correlation Coefficient Murlet(20):
0.625
McQFold:
0.613
Sensitivity Murlet(20):
0.530
McQFold:
0.628
Positive Predictive Value Murlet(20):
0.744
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.50703181085e-05
|
+
Murlet(20) vs ProbKnot
Matthews Correlation Coefficient Murlet(20):
0.579
ProbKnot:
0.562
Sensitivity Murlet(20):
0.490
ProbKnot:
0.600
Positive Predictive Value Murlet(20):
0.690
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59391197053e-08
|
+
Murlet(20) vs UNAFold
Matthews Correlation Coefficient Murlet(20):
0.625
UNAFold:
0.581
Sensitivity Murlet(20):
0.530
UNAFold:
0.602
Positive Predictive Value Murlet(20):
0.744
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Murlet(20) vs HotKnots
Matthews Correlation Coefficient Murlet(20):
0.625
HotKnots:
0.548
Sensitivity Murlet(20):
0.530
HotKnots:
0.585
Positive Predictive Value Murlet(20):
0.744
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
Murlet(20) vs RNAshapes
Matthews Correlation Coefficient Murlet(20):
0.625
RNAshapes:
0.576
Sensitivity Murlet(20):
0.530
RNAshapes:
0.596
Positive Predictive Value Murlet(20):
0.744
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Murlet(20) vs RNAfold
Matthews Correlation Coefficient Murlet(20):
0.625
RNAfold:
0.572
Sensitivity Murlet(20):
0.530
RNAfold:
0.601
Positive Predictive Value Murlet(20):
0.744
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Murlet(20) vs Afold
Matthews Correlation Coefficient Murlet(20):
0.582
Afold:
0.547
Sensitivity Murlet(20):
0.472
Afold:
0.579
Positive Predictive Value Murlet(20):
0.725
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.71031696622e-08
|
+
Murlet(20) vs RSpredict(20)
Matthews Correlation Coefficient Murlet(20):
0.625
RSpredict(20):
0.585
Sensitivity Murlet(20):
0.530
RSpredict(20):
0.534
Positive Predictive Value Murlet(20):
0.744
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
?
Murlet(20) vs Multilign(seed)
Matthews Correlation Coefficient Murlet(20):
0.682
Multilign(seed):
0.625
Sensitivity Murlet(20):
0.619
Multilign(seed):
0.587
Positive Predictive Value Murlet(20):
0.757
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs RNAsubopt
Matthews Correlation Coefficient Murlet(20):
0.625
RNAsubopt:
0.564
Sensitivity Murlet(20):
0.530
RNAsubopt:
0.596
Positive Predictive Value Murlet(20):
0.744
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Murlet(20) vs Fold
Matthews Correlation Coefficient Murlet(20):
0.579
Fold:
0.526
Sensitivity Murlet(20):
0.490
Fold:
0.562
Positive Predictive Value Murlet(20):
0.690
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
+
Murlet(20) vs Vsfold4
Matthews Correlation Coefficient Murlet(20):
0.637
Vsfold4:
0.537
Sensitivity Murlet(20):
0.538
Vsfold4:
0.531
Positive Predictive Value Murlet(20):
0.760
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
RNASampler(seed) vs Murlet(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
Murlet(20):
0.552
Sensitivity RNASampler(seed):
0.525
Murlet(20):
0.514
Positive Predictive Value RNASampler(seed):
0.638
Murlet(20):
0.600
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs Multilign(20)
Matthews Correlation Coefficient Murlet(20):
0.595
Multilign(20):
0.517
Sensitivity Murlet(20):
0.539
Multilign(20):
0.530
Positive Predictive Value Murlet(20):
0.667
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 7.93000771886e-09
|
+
Murlet(20) vs Mastr(20)
Matthews Correlation Coefficient Murlet(20):
0.625
Mastr(20):
0.508
Sensitivity Murlet(20):
0.530
Mastr(20):
0.329
Positive Predictive Value Murlet(20):
0.744
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
Murlet(20) vs Murlet(seed)
Matthews Correlation Coefficient Murlet(20):
0.619
Murlet(seed):
0.564
Sensitivity Murlet(20):
0.527
Murlet(seed):
0.366
Positive Predictive Value Murlet(20):
0.734
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
+
Murlet(20) vs Vsfold5
Matthews Correlation Coefficient Murlet(20):
0.637
Vsfold5:
0.493
Sensitivity Murlet(20):
0.538
Vsfold5:
0.493
Positive Predictive Value Murlet(20):
0.760
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
?
Murlet(20) vs Alterna
Matthews Correlation Coefficient Murlet(20):
0.808
Alterna:
0.593
Sensitivity Murlet(20):
0.708
Alterna:
0.596
Positive Predictive Value Murlet(20):
0.931
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs RDfolder
Matthews Correlation Coefficient Murlet(20):
0.777
RDfolder:
0.641
Sensitivity Murlet(20):
0.670
RDfolder:
0.585
Positive Predictive Value Murlet(20):
0.910
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
+
Murlet(20) vs MCFold
Matthews Correlation Coefficient Murlet(20):
0.640
MCFold:
0.453
Sensitivity Murlet(20):
0.569
MCFold:
0.507
Positive Predictive Value Murlet(20):
0.726
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
Murlet(20) vs RNAwolf
Matthews Correlation Coefficient Murlet(20):
0.576
RNAwolf:
0.396
Sensitivity Murlet(20):
0.521
RNAwolf:
0.425
Positive Predictive Value Murlet(20):
0.646
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
+
Murlet(20) vs RSpredict(seed)
Matthews Correlation Coefficient Murlet(20):
0.625
RSpredict(seed):
0.296
Sensitivity Murlet(20):
0.530
RSpredict(seed):
0.148
Positive Predictive Value Murlet(20):
0.744
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
Murlet(20) vs Carnac(seed)
Matthews Correlation Coefficient Murlet(20):
0.619
Carnac(seed):
0.000
Sensitivity Murlet(20):
0.527
Carnac(seed):
0.000
Positive Predictive Value Murlet(20):
0.734
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
?
Murlet(20) vs NanoFolder
Matthews Correlation Coefficient Murlet(20):
0.574
NanoFolder:
0.314
Sensitivity Murlet(20):
0.538
NanoFolder:
0.427
Positive Predictive Value Murlet(20):
0.618
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(20) vs PPfold(seed)
Matthews Correlation Coefficient Murlet(20):
0.576
PPfold(seed):
0.073
Sensitivity Murlet(20):
0.521
PPfold(seed):
0.019
Positive Predictive Value Murlet(20):
0.646
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
?
Murlet(20) vs CMfinder(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
CMfinder(seed):
N/A
Sensitivity Murlet(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Murlet(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Murlet(20) vs DAFS(20)
Matthews Correlation Coefficient Murlet(20):
N/A
DAFS(20):
N/A
Sensitivity Murlet(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Murlet(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Murlet(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Murlet(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Murlet(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Murlet(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Murlet(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
Murlet(20):
0.522
Sensitivity CMfinder(20):
0.500
Murlet(20):
0.490
Positive Predictive Value CMfinder(20):
0.681
Murlet(20):
0.565
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Murlet(20) vs CRWrnafold
Matthews Correlation Coefficient Murlet(20):
0.622
CRWrnafold:
0.592
Sensitivity Murlet(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value Murlet(20):
0.706
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Murlet(20) vs DAFS(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
DAFS(seed):
N/A
Sensitivity Murlet(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Murlet(20) vs Mastr(seed)
Matthews Correlation Coefficient Murlet(20):
0.625
Mastr(seed):
0.000
Sensitivity Murlet(20):
0.530
Mastr(seed):
0.000
Positive Predictive Value Murlet(20):
0.744
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
PETfold_pre2.0(20) |
10
CentroidAlifold(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.668
PETfold_pre2.0(20):
0.622
Sensitivity CentroidAlifold(seed):
0.476
PETfold_pre2.0(20):
0.597
Positive Predictive Value CentroidAlifold(seed):
0.942
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.97952969696e-09
|
10
CentroidAlifold(20) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
PETfold_pre2.0(20):
0.622
Sensitivity CentroidAlifold(20):
0.558
PETfold_pre2.0(20):
0.597
Positive Predictive Value CentroidAlifold(20):
0.816
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
11
PETfold_pre2.0(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
PETfold_pre2.0(20):
0.718
Sensitivity PETfold_pre2.0(seed):
0.751
PETfold_pre2.0(20):
0.682
Positive Predictive Value PETfold_pre2.0(seed):
0.859
PETfold_pre2.0(20):
0.758
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
8
RNAalifold(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.643
PETfold_pre2.0(20):
0.547
Sensitivity RNAalifold(seed):
0.416
PETfold_pre2.0(20):
0.518
Positive Predictive Value RNAalifold(seed):
1.000
PETfold_pre2.0(20):
0.585
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
10
PETfold_pre2.0(20) vs RNAalifold(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAalifold(20):
0.620
Sensitivity PETfold_pre2.0(20):
0.597
RNAalifold(20):
0.573
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAalifold(20):
0.678
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.168792045773
|
9
PETfold_pre2.0(20) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.595
MXScarna(seed):
0.539
Sensitivity PETfold_pre2.0(20):
0.567
MXScarna(seed):
0.476
Positive Predictive Value PETfold_pre2.0(20):
0.631
MXScarna(seed):
0.618
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
10
PETfold_pre2.0(20) vs CentroidFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
CentroidFold:
0.514
Sensitivity PETfold_pre2.0(20):
0.597
CentroidFold:
0.515
Positive Predictive Value PETfold_pre2.0(20):
0.654
CentroidFold:
0.522
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
10
PPfold(20) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient PPfold(20):
0.624
PETfold_pre2.0(20):
0.622
Sensitivity PPfold(20):
0.573
PETfold_pre2.0(20):
0.597
Positive Predictive Value PPfold(20):
0.686
PETfold_pre2.0(20):
0.654
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.165436734584
|
10
PETfold_pre2.0(20) vs TurboFold(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
TurboFold(20):
0.596
Sensitivity PETfold_pre2.0(20):
0.597
TurboFold(20):
0.597
Positive Predictive Value PETfold_pre2.0(20):
0.654
TurboFold(20):
0.603
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.69708324004e-07
|
10
PETfold_pre2.0(20) vs RNASampler(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNASampler(20):
0.573
Sensitivity PETfold_pre2.0(20):
0.597
RNASampler(20):
0.539
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNASampler(20):
0.617
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
10
PETfold_pre2.0(20) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
MXScarna(20):
0.550
Sensitivity PETfold_pre2.0(20):
0.597
MXScarna(20):
0.519
Positive Predictive Value PETfold_pre2.0(20):
0.654
MXScarna(20):
0.591
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14308339945e-09
|
10
PETfold_pre2.0(20) vs ContextFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
ContextFold:
0.558
Sensitivity PETfold_pre2.0(20):
0.597
ContextFold:
0.544
Positive Predictive Value PETfold_pre2.0(20):
0.654
ContextFold:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.58026052395e-09
|
10
PETfold_pre2.0(20) vs IPknot
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
IPknot:
0.470
Sensitivity PETfold_pre2.0(20):
0.597
IPknot:
0.466
Positive Predictive Value PETfold_pre2.0(20):
0.654
IPknot:
0.482
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.9460272886e-09
|
10
PETfold_pre2.0(20) vs Contrafold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Contrafold:
0.492
Sensitivity PETfold_pre2.0(20):
0.597
Contrafold:
0.519
Positive Predictive Value PETfold_pre2.0(20):
0.654
Contrafold:
0.476
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
10
PETfold_pre2.0(20) vs Carnac(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Carnac(20):
0.516
Sensitivity PETfold_pre2.0(20):
0.597
Carnac(20):
0.345
Positive Predictive Value PETfold_pre2.0(20):
0.654
Carnac(20):
0.780
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
10
PETfold_pre2.0(20) vs Murlet(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Murlet(20):
0.513
Sensitivity PETfold_pre2.0(20):
0.597
Murlet(20):
0.461
Positive Predictive Value PETfold_pre2.0(20):
0.654
Murlet(20):
0.579
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.08519761914e-09
|
|
+
PETfold_pre2.0(20) vs Sfold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Sfold:
0.452
Sensitivity PETfold_pre2.0(20):
0.597
Sfold:
0.447
Positive Predictive Value PETfold_pre2.0(20):
0.654
Sfold:
0.467
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
+
PETfold_pre2.0(20) vs Pknots
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Pknots:
0.440
Sensitivity PETfold_pre2.0(20):
0.597
Pknots:
0.495
Positive Predictive Value PETfold_pre2.0(20):
0.654
Pknots:
0.400
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.60513176667e-09
|
+
PETfold_pre2.0(20) vs MaxExpect
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
MaxExpect:
0.416
Sensitivity PETfold_pre2.0(20):
0.597
MaxExpect:
0.432
Positive Predictive Value PETfold_pre2.0(20):
0.654
MaxExpect:
0.410
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.68298245606e-09
|
?
PETfold_pre2.0(20) vs TurboFold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.490
TurboFold(seed):
0.468
Sensitivity PETfold_pre2.0(20):
0.465
TurboFold(seed):
0.479
Positive Predictive Value PETfold_pre2.0(20):
0.524
TurboFold(seed):
0.466
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs PknotsRG
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
PknotsRG:
0.466
Sensitivity PETfold_pre2.0(20):
0.597
PknotsRG:
0.529
Positive Predictive Value PETfold_pre2.0(20):
0.654
PknotsRG:
0.419
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
?
PETfold_pre2.0(20) vs Cylofold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.833
Cylofold:
0.772
Sensitivity PETfold_pre2.0(20):
0.769
Cylofold:
0.750
Positive Predictive Value PETfold_pre2.0(20):
0.909
Cylofold:
0.804
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
CentroidHomfold‑LAST:
0.516
Sensitivity PETfold_pre2.0(20):
0.655
CentroidHomfold‑LAST:
0.542
Positive Predictive Value PETfold_pre2.0(20):
0.707
CentroidHomfold‑LAST:
0.500
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs RNASLOpt
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNASLOpt:
0.480
Sensitivity PETfold_pre2.0(20):
0.597
RNASLOpt:
0.500
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
+
PETfold_pre2.0(20) vs McQFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
McQFold:
0.541
Sensitivity PETfold_pre2.0(20):
0.597
McQFold:
0.592
Positive Predictive Value PETfold_pre2.0(20):
0.654
McQFold:
0.502
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
+
PETfold_pre2.0(20) vs ProbKnot
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
ProbKnot:
0.421
Sensitivity PETfold_pre2.0(20):
0.597
ProbKnot:
0.466
Positive Predictive Value PETfold_pre2.0(20):
0.654
ProbKnot:
0.390
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.26710183075e-09
|
+
PETfold_pre2.0(20) vs UNAFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
UNAFold:
0.380
Sensitivity PETfold_pre2.0(20):
0.597
UNAFold:
0.422
Positive Predictive Value PETfold_pre2.0(20):
0.654
UNAFold:
0.352
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
+
PETfold_pre2.0(20) vs HotKnots
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
HotKnots:
0.386
Sensitivity PETfold_pre2.0(20):
0.597
HotKnots:
0.442
Positive Predictive Value PETfold_pre2.0(20):
0.654
HotKnots:
0.347
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
PETfold_pre2.0(20) vs RNAshapes
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAshapes:
0.416
Sensitivity PETfold_pre2.0(20):
0.597
RNAshapes:
0.461
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAshapes:
0.386
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
+
PETfold_pre2.0(20) vs RNAfold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAfold:
0.389
Sensitivity PETfold_pre2.0(20):
0.597
RNAfold:
0.432
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAfold:
0.360
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.08519761914e-09
|
?
PETfold_pre2.0(20) vs Afold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.428
Afold:
0.353
Sensitivity PETfold_pre2.0(20):
0.400
Afold:
0.420
Positive Predictive Value PETfold_pre2.0(20):
0.465
Afold:
0.304
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs RSpredict(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.718
RSpredict(20):
0.558
Sensitivity PETfold_pre2.0(20):
0.682
RSpredict(20):
0.511
Positive Predictive Value PETfold_pre2.0(20):
0.758
RSpredict(20):
0.611
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
?
PETfold_pre2.0(20) vs Multilign(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.553
Multilign(seed):
0.517
Sensitivity PETfold_pre2.0(20):
0.521
Multilign(seed):
0.479
Positive Predictive Value PETfold_pre2.0(20):
0.594
Multilign(seed):
0.565
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs RNAsubopt
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAsubopt:
0.420
Sensitivity PETfold_pre2.0(20):
0.597
RNAsubopt:
0.476
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAsubopt:
0.381
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
+
PETfold_pre2.0(20) vs Fold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Fold:
0.334
Sensitivity PETfold_pre2.0(20):
0.597
Fold:
0.379
Positive Predictive Value PETfold_pre2.0(20):
0.654
Fold:
0.306
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.05024866538e-09
|
?
PETfold_pre2.0(20) vs Vsfold4
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Vsfold4:
0.527
Sensitivity PETfold_pre2.0(20):
0.655
Vsfold4:
0.542
Positive Predictive Value PETfold_pre2.0(20):
0.707
Vsfold4:
0.522
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient RNASampler(seed):
0.367
PETfold_pre2.0(20):
0.316
Sensitivity RNASampler(seed):
0.349
PETfold_pre2.0(20):
0.313
Positive Predictive Value RNASampler(seed):
0.392
PETfold_pre2.0(20):
0.325
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs Multilign(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Multilign(20):
0.441
Sensitivity PETfold_pre2.0(20):
0.655
Multilign(20):
0.458
Positive Predictive Value PETfold_pre2.0(20):
0.707
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs Mastr(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Mastr(20):
0.467
Sensitivity PETfold_pre2.0(20):
0.597
Mastr(20):
0.272
Positive Predictive Value PETfold_pre2.0(20):
0.654
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
?
PETfold_pre2.0(20) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.547
Murlet(seed):
0.515
Sensitivity PETfold_pre2.0(20):
0.518
Murlet(seed):
0.313
Positive Predictive Value PETfold_pre2.0(20):
0.585
Murlet(seed):
0.852
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs Vsfold5
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Vsfold5:
0.508
Sensitivity PETfold_pre2.0(20):
0.655
Vsfold5:
0.554
Positive Predictive Value PETfold_pre2.0(20):
0.707
Vsfold5:
0.476
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs Alterna
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
Alterna:
N/A
Sensitivity PETfold_pre2.0(20):
N/A
Alterna:
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(20) vs RDfolder
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.826
RDfolder:
0.595
Sensitivity PETfold_pre2.0(20):
0.778
RDfolder:
0.545
Positive Predictive Value PETfold_pre2.0(20):
0.885
RDfolder:
0.667
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs MCFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.581
MCFold:
0.352
Sensitivity PETfold_pre2.0(20):
0.559
MCFold:
0.418
Positive Predictive Value PETfold_pre2.0(20):
0.611
MCFold:
0.307
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs RNAwolf
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAwolf:
0.323
Sensitivity PETfold_pre2.0(20):
0.597
RNAwolf:
0.354
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAwolf:
0.305
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
+
PETfold_pre2.0(20) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.718
RSpredict(seed):
0.471
Sensitivity PETfold_pre2.0(20):
0.682
RSpredict(seed):
0.321
Positive Predictive Value PETfold_pre2.0(20):
0.758
RSpredict(seed):
0.694
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
?
PETfold_pre2.0(20) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.547
Carnac(seed):
0.000
Sensitivity PETfold_pre2.0(20):
0.518
Carnac(seed):
0.000
Positive Predictive Value PETfold_pre2.0(20):
0.585
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs NanoFolder
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.588
NanoFolder:
0.314
Sensitivity PETfold_pre2.0(20):
0.581
NanoFolder:
0.427
Positive Predictive Value PETfold_pre2.0(20):
0.602
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
PETfold_pre2.0(20) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
PPfold(seed):
0.082
Sensitivity PETfold_pre2.0(20):
0.597
PPfold(seed):
0.024
Positive Predictive Value PETfold_pre2.0(20):
0.654
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.21732636221e-09
|
?
PETfold_pre2.0(20) vs CMfinder(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(20) vs DAFS(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_pre2.0(20) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.722
CMfinder(20):
0.580
Sensitivity PETfold_pre2.0(20):
0.724
CMfinder(20):
0.500
Positive Predictive Value PETfold_pre2.0(20):
0.724
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs CRWrnafold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.619
CRWrnafold:
0.579
Sensitivity PETfold_pre2.0(20):
0.570
CRWrnafold:
0.595
Positive Predictive Value PETfold_pre2.0(20):
0.682
CRWrnafold:
0.573
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
?
PETfold_pre2.0(20) vs DAFS(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
PETfold_pre2.0(20) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Mastr(seed):
0.000
Sensitivity PETfold_pre2.0(20):
0.597
Mastr(seed):
0.000
Positive Predictive Value PETfold_pre2.0(20):
0.654
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
Sfold |
30
CentroidAlifold(seed) vs Sfold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Sfold:
0.604
Sensitivity CentroidAlifold(seed):
0.672
Sfold:
0.600
Positive Predictive Value CentroidAlifold(seed):
0.908
Sfold:
0.610
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs Sfold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Sfold:
0.609
Sensitivity CentroidAlifold(20):
0.664
Sfold:
0.583
Positive Predictive Value CentroidAlifold(20):
0.900
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.6587683192e-08
|
16
PETfold_pre2.0(seed) vs Sfold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Sfold:
0.570
Sensitivity PETfold_pre2.0(seed):
0.802
Sfold:
0.565
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Sfold:
0.576
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
25
RNAalifold(seed) vs Sfold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
Sfold:
0.614
Sensitivity RNAalifold(seed):
0.607
Sfold:
0.610
Positive Predictive Value RNAalifold(seed):
0.872
Sfold:
0.619
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
RNAalifold(20) vs Sfold
Matthews Correlation Coefficient RNAalifold(20):
0.733
Sfold:
0.609
Sensitivity RNAalifold(20):
0.654
Sfold:
0.583
Positive Predictive Value RNAalifold(20):
0.826
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
29
MXScarna(seed) vs Sfold
Matthews Correlation Coefficient MXScarna(seed):
0.739
Sfold:
0.606
Sensitivity MXScarna(seed):
0.698
Sfold:
0.604
Positive Predictive Value MXScarna(seed):
0.784
Sfold:
0.611
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
42
CentroidFold vs Sfold
Matthews Correlation Coefficient CentroidFold:
0.611
Sfold:
0.527
Sensitivity CentroidFold:
0.600
Sfold:
0.532
Positive Predictive Value CentroidFold:
0.622
Sfold:
0.522
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs Sfold
Matthews Correlation Coefficient PPfold(20):
0.668
Sfold:
0.527
Sensitivity PPfold(20):
0.614
Sfold:
0.514
Positive Predictive Value PPfold(20):
0.733
Sfold:
0.550
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
12
TurboFold(20) vs Sfold
Matthews Correlation Coefficient TurboFold(20):
0.636
Sfold:
0.527
Sensitivity TurboFold(20):
0.629
Sfold:
0.514
Positive Predictive Value TurboFold(20):
0.649
Sfold:
0.550
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
21
RNASampler(20) vs Sfold
Matthews Correlation Coefficient RNASampler(20):
0.692
Sfold:
0.609
Sensitivity RNASampler(20):
0.621
Sfold:
0.583
Positive Predictive Value RNASampler(20):
0.776
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MXScarna(20) vs Sfold
Matthews Correlation Coefficient MXScarna(20):
0.678
Sfold:
0.609
Sensitivity MXScarna(20):
0.640
Sfold:
0.583
Positive Predictive Value MXScarna(20):
0.724
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
22
ContextFold vs Sfold
Matthews Correlation Coefficient ContextFold:
0.596
Sfold:
0.499
Sensitivity ContextFold:
0.588
Sfold:
0.506
Positive Predictive Value ContextFold:
0.604
Sfold:
0.494
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.69757073427e-08
|
24
IPknot vs Sfold
Matthews Correlation Coefficient IPknot:
0.600
Sfold:
0.513
Sensitivity IPknot:
0.560
Sfold:
0.517
Positive Predictive Value IPknot:
0.644
Sfold:
0.509
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
46
Contrafold vs Sfold
Matthews Correlation Coefficient Contrafold:
0.610
Sfold:
0.521
Sensitivity Contrafold:
0.632
Sfold:
0.524
Positive Predictive Value Contrafold:
0.589
Sfold:
0.519
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs Sfold
Matthews Correlation Coefficient Carnac(20):
0.641
Sfold:
0.609
Sensitivity Carnac(20):
0.456
Sfold:
0.583
Positive Predictive Value Carnac(20):
0.908
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.15842348871e-07
|
21
Murlet(20) vs Sfold
Matthews Correlation Coefficient Murlet(20):
0.625
Sfold:
0.609
Sensitivity Murlet(20):
0.530
Sfold:
0.583
Positive Predictive Value Murlet(20):
0.744
Sfold:
0.642
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.01433221554e-05
|
10
PETfold_pre2.0(20) vs Sfold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Sfold:
0.452
Sensitivity PETfold_pre2.0(20):
0.597
Sfold:
0.447
Positive Predictive Value PETfold_pre2.0(20):
0.654
Sfold:
0.467
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
|
+
Sfold vs Pknots
Matthews Correlation Coefficient Sfold:
0.652
Pknots:
0.648
Sensitivity Sfold:
0.625
Pknots:
0.676
Positive Predictive Value Sfold:
0.690
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.27627446095e-05
|
-
MaxExpect vs Sfold
Matthews Correlation Coefficient MaxExpect:
0.589
Sfold:
0.541
Sensitivity MaxExpect:
0.604
Sfold:
0.536
Positive Predictive Value MaxExpect:
0.576
Sfold:
0.547
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
TurboFold(seed) vs Sfold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Sfold:
0.609
Sensitivity TurboFold(seed):
0.598
Sfold:
0.581
Positive Predictive Value TurboFold(seed):
0.630
Sfold:
0.647
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.0294771630115
|
+
Sfold vs PknotsRG
Matthews Correlation Coefficient Sfold:
0.515
PknotsRG:
0.481
Sensitivity Sfold:
0.517
PknotsRG:
0.523
Positive Predictive Value Sfold:
0.513
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
Sfold vs Cylofold
Matthews Correlation Coefficient Sfold:
0.669
Cylofold:
0.669
Sensitivity Sfold:
0.628
Cylofold:
0.648
Positive Predictive Value Sfold:
0.724
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.573619169352
|
-
CentroidHomfold‑LAST vs Sfold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Sfold:
0.556
Sensitivity CentroidHomfold‑LAST:
0.565
Sfold:
0.542
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Sfold:
0.583
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 5.57076602694e-08
|
-
RNASLOpt vs Sfold
Matthews Correlation Coefficient RNASLOpt:
0.558
Sfold:
0.542
Sensitivity RNASLOpt:
0.555
Sfold:
0.523
Positive Predictive Value RNASLOpt:
0.572
Sfold:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 2.17043408065e-05
|
+
Sfold vs McQFold
Matthews Correlation Coefficient Sfold:
0.521
McQFold:
0.417
Sensitivity Sfold:
0.524
McQFold:
0.398
Positive Predictive Value Sfold:
0.519
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs ProbKnot
Matthews Correlation Coefficient Sfold:
0.531
ProbKnot:
0.524
Sensitivity Sfold:
0.537
ProbKnot:
0.554
Positive Predictive Value Sfold:
0.525
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 6.53888633552e-08
|
+
Sfold vs UNAFold
Matthews Correlation Coefficient Sfold:
0.521
UNAFold:
0.496
Sensitivity Sfold:
0.524
UNAFold:
0.530
Positive Predictive Value Sfold:
0.519
UNAFold:
0.464
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs HotKnots
Matthews Correlation Coefficient Sfold:
0.617
HotKnots:
0.588
Sensitivity Sfold:
0.604
HotKnots:
0.627
Positive Predictive Value Sfold:
0.638
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs RNAshapes
Matthews Correlation Coefficient Sfold:
0.617
RNAshapes:
0.585
Sensitivity Sfold:
0.604
RNAshapes:
0.606
Positive Predictive Value Sfold:
0.638
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs RNAfold
Matthews Correlation Coefficient Sfold:
0.521
RNAfold:
0.492
Sensitivity Sfold:
0.524
RNAfold:
0.531
Positive Predictive Value Sfold:
0.519
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs Afold
Matthews Correlation Coefficient Sfold:
0.494
Afold:
0.473
Sensitivity Sfold:
0.500
Afold:
0.516
Positive Predictive Value Sfold:
0.488
Afold:
0.434
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs RSpredict(20)
Matthews Correlation Coefficient Sfold:
0.609
RSpredict(20):
0.585
Sensitivity Sfold:
0.583
RSpredict(20):
0.534
Positive Predictive Value Sfold:
0.642
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.18380060481e-06
|
+
Sfold vs Multilign(seed)
Matthews Correlation Coefficient Sfold:
0.664
Multilign(seed):
0.658
Sensitivity Sfold:
0.627
Multilign(seed):
0.608
Positive Predictive Value Sfold:
0.712
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.95715734741e-05
|
+
Sfold vs RNAsubopt
Matthews Correlation Coefficient Sfold:
0.617
RNAsubopt:
0.581
Sensitivity Sfold:
0.604
RNAsubopt:
0.612
Positive Predictive Value Sfold:
0.638
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs Fold
Matthews Correlation Coefficient Sfold:
0.533
Fold:
0.490
Sensitivity Sfold:
0.539
Fold:
0.523
Positive Predictive Value Sfold:
0.529
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs Vsfold4
Matthews Correlation Coefficient Sfold:
0.609
Vsfold4:
0.553
Sensitivity Sfold:
0.601
Vsfold4:
0.549
Positive Predictive Value Sfold:
0.624
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs RNASampler(seed)
Matthews Correlation Coefficient Sfold:
0.610
RNASampler(seed):
0.563
Sensitivity Sfold:
0.601
RNASampler(seed):
0.472
Positive Predictive Value Sfold:
0.625
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
+
Sfold vs Multilign(20)
Matthews Correlation Coefficient Sfold:
0.539
Multilign(20):
0.517
Sensitivity Sfold:
0.535
Multilign(20):
0.530
Positive Predictive Value Sfold:
0.554
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.59167096901e-06
|
+
Sfold vs Mastr(20)
Matthews Correlation Coefficient Sfold:
0.609
Mastr(20):
0.508
Sensitivity Sfold:
0.583
Mastr(20):
0.329
Positive Predictive Value Sfold:
0.642
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
Sfold vs Murlet(seed)
Matthews Correlation Coefficient Sfold:
0.699
Murlet(seed):
0.534
Sensitivity Sfold:
0.664
Murlet(seed):
0.349
Positive Predictive Value Sfold:
0.744
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Sfold vs Vsfold5
Matthews Correlation Coefficient Sfold:
0.611
Vsfold5:
0.523
Sensitivity Sfold:
0.600
Vsfold5:
0.527
Positive Predictive Value Sfold:
0.630
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs Alterna
Matthews Correlation Coefficient Sfold:
0.715
Alterna:
0.647
Sensitivity Sfold:
0.681
Alterna:
0.636
Positive Predictive Value Sfold:
0.763
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
Sfold vs RDfolder
Matthews Correlation Coefficient Sfold:
0.665
RDfolder:
0.569
Sensitivity Sfold:
0.629
RDfolder:
0.510
Positive Predictive Value Sfold:
0.717
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Sfold vs MCFold
Matthews Correlation Coefficient Sfold:
0.620
MCFold:
0.465
Sensitivity Sfold:
0.593
MCFold:
0.510
Positive Predictive Value Sfold:
0.658
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs RNAwolf
Matthews Correlation Coefficient Sfold:
0.513
RNAwolf:
0.406
Sensitivity Sfold:
0.517
RNAwolf:
0.415
Positive Predictive Value Sfold:
0.509
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
Sfold vs RSpredict(seed)
Matthews Correlation Coefficient Sfold:
0.604
RSpredict(seed):
0.498
Sensitivity Sfold:
0.600
RSpredict(seed):
0.359
Positive Predictive Value Sfold:
0.610
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Sfold vs Carnac(seed)
Matthews Correlation Coefficient Sfold:
0.644
Carnac(seed):
0.492
Sensitivity Sfold:
0.630
Carnac(seed):
0.259
Positive Predictive Value Sfold:
0.660
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Sfold vs NanoFolder
Matthews Correlation Coefficient Sfold:
0.462
NanoFolder:
0.406
Sensitivity Sfold:
0.456
NanoFolder:
0.516
Positive Predictive Value Sfold:
0.481
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.1022514496e-08
|
+
Sfold vs PPfold(seed)
Matthews Correlation Coefficient Sfold:
0.601
PPfold(seed):
0.202
Sensitivity Sfold:
0.575
PPfold(seed):
0.066
Positive Predictive Value Sfold:
0.637
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.43573297697e-08
|
?
CMfinder(seed) vs Sfold
Matthews Correlation Coefficient CMfinder(seed):
N/A
Sfold:
N/A
Sensitivity CMfinder(seed):
N/A
Sfold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Sfold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Sfold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Sfold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Sfold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Sfold vs DAFS(20)
Matthews Correlation Coefficient Sfold:
N/A
DAFS(20):
N/A
Sensitivity Sfold:
N/A
DAFS(20):
N/A
Positive Predictive Value Sfold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs Sfold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Sfold:
N/A
Sensitivity PETfold_2.0(20):
N/A
Sfold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Sfold
Matthews Correlation Coefficient CMfinder(20):
0.580
Sfold:
0.424
Sensitivity CMfinder(20):
0.500
Sfold:
0.449
Positive Predictive Value CMfinder(20):
0.681
Sfold:
0.411
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Sfold vs CRWrnafold
Matthews Correlation Coefficient Sfold:
0.550
CRWrnafold:
0.502
Sensitivity Sfold:
0.535
CRWrnafold:
0.516
Positive Predictive Value Sfold:
0.578
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Sfold
Matthews Correlation Coefficient DAFS(seed):
N/A
Sfold:
N/A
Sensitivity DAFS(seed):
N/A
Sfold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Sfold vs Mastr(seed)
Matthews Correlation Coefficient Sfold:
0.620
Mastr(seed):
0.036
Sensitivity Sfold:
0.609
Mastr(seed):
0.004
Positive Predictive Value Sfold:
0.637
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
Pknots |
27
CentroidAlifold(seed) vs Pknots
Matthews Correlation Coefficient CentroidAlifold(seed):
0.760
Pknots:
0.659
Sensitivity CentroidAlifold(seed):
0.609
Pknots:
0.690
Positive Predictive Value CentroidAlifold(seed):
0.953
Pknots:
0.638
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
20
CentroidAlifold(20) vs Pknots
Matthews Correlation Coefficient CentroidAlifold(20):
0.790
Pknots:
0.590
Sensitivity CentroidAlifold(20):
0.693
Pknots:
0.630
Positive Predictive Value CentroidAlifold(20):
0.903
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
15
PETfold_pre2.0(seed) vs Pknots
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
Pknots:
0.577
Sensitivity PETfold_pre2.0(seed):
0.726
Pknots:
0.621
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Pknots:
0.545
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
22
RNAalifold(seed) vs Pknots
Matthews Correlation Coefficient RNAalifold(seed):
0.695
Pknots:
0.641
Sensitivity RNAalifold(seed):
0.532
Pknots:
0.673
Positive Predictive Value RNAalifold(seed):
0.915
Pknots:
0.620
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
20
RNAalifold(20) vs Pknots
Matthews Correlation Coefficient RNAalifold(20):
0.748
Pknots:
0.590
Sensitivity RNAalifold(20):
0.687
Pknots:
0.630
Positive Predictive Value RNAalifold(20):
0.821
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
26
MXScarna(seed) vs Pknots
Matthews Correlation Coefficient MXScarna(seed):
0.704
Pknots:
0.666
Sensitivity MXScarna(seed):
0.648
Pknots:
0.695
Positive Predictive Value MXScarna(seed):
0.773
Pknots:
0.646
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 6.98181597377e-08
|
36
CentroidFold vs Pknots
Matthews Correlation Coefficient CentroidFold:
0.734
Pknots:
0.651
Sensitivity CentroidFold:
0.707
Pknots:
0.678
Positive Predictive Value CentroidFold:
0.768
Pknots:
0.634
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
12
PPfold(20) vs Pknots
Matthews Correlation Coefficient PPfold(20):
0.668
Pknots:
0.511
Sensitivity PPfold(20):
0.614
Pknots:
0.560
Positive Predictive Value PPfold(20):
0.733
Pknots:
0.477
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
12
TurboFold(20) vs Pknots
Matthews Correlation Coefficient TurboFold(20):
0.636
Pknots:
0.511
Sensitivity TurboFold(20):
0.629
Pknots:
0.560
Positive Predictive Value TurboFold(20):
0.649
Pknots:
0.477
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
20
RNASampler(20) vs Pknots
Matthews Correlation Coefficient RNASampler(20):
0.723
Pknots:
0.590
Sensitivity RNASampler(20):
0.663
Pknots:
0.630
Positive Predictive Value RNASampler(20):
0.795
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
20
MXScarna(20) vs Pknots
Matthews Correlation Coefficient MXScarna(20):
0.697
Pknots:
0.590
Sensitivity MXScarna(20):
0.660
Pknots:
0.630
Positive Predictive Value MXScarna(20):
0.741
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
ContextFold vs Pknots
Matthews Correlation Coefficient ContextFold:
0.619
Pknots:
0.568
Sensitivity ContextFold:
0.594
Pknots:
0.609
Positive Predictive Value ContextFold:
0.655
Pknots:
0.541
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 9.04653292859e-08
|
22
IPknot vs Pknots
Matthews Correlation Coefficient IPknot:
0.637
Pknots:
0.597
Sensitivity IPknot:
0.613
Pknots:
0.632
Positive Predictive Value IPknot:
0.672
Pknots:
0.574
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 6.38150542963e-08
|
39
Contrafold vs Pknots
Matthews Correlation Coefficient Contrafold:
0.689
Pknots:
0.648
Sensitivity Contrafold:
0.692
Pknots:
0.676
Positive Predictive Value Contrafold:
0.696
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
20
Carnac(20) vs Pknots
Matthews Correlation Coefficient Carnac(20):
0.663
Pknots:
0.590
Sensitivity Carnac(20):
0.486
Pknots:
0.630
Positive Predictive Value Carnac(20):
0.911
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
20
Murlet(20) vs Pknots
Matthews Correlation Coefficient Murlet(20):
0.653
Pknots:
0.590
Sensitivity Murlet(20):
0.570
Pknots:
0.630
Positive Predictive Value Murlet(20):
0.755
Pknots:
0.561
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
10
PETfold_pre2.0(20) vs Pknots
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Pknots:
0.440
Sensitivity PETfold_pre2.0(20):
0.597
Pknots:
0.495
Positive Predictive Value PETfold_pre2.0(20):
0.654
Pknots:
0.400
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.60513176667e-09
|
39
Sfold vs Pknots
Matthews Correlation Coefficient Sfold:
0.652
Pknots:
0.648
Sensitivity Sfold:
0.625
Pknots:
0.676
Positive Predictive Value Sfold:
0.690
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.27627446095e-05
|
|
=
MaxExpect vs Pknots
Matthews Correlation Coefficient MaxExpect:
0.634
Pknots:
0.632
Sensitivity MaxExpect:
0.631
Pknots:
0.660
Positive Predictive Value MaxExpect:
0.647
Pknots:
0.614
Number of pairs reference - predicted secondary structure: 34
Wilcoxon single-rank test P-value: 0.252259869312
|
-
TurboFold(seed) vs Pknots
Matthews Correlation Coefficient TurboFold(seed):
0.610
Pknots:
0.584
Sensitivity TurboFold(seed):
0.598
Pknots:
0.632
Positive Predictive Value TurboFold(seed):
0.630
Pknots:
0.548
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.67820377009e-05
|
+
Pknots vs PknotsRG
Matthews Correlation Coefficient Pknots:
0.648
PknotsRG:
0.634
Sensitivity Pknots:
0.676
PknotsRG:
0.658
Positive Predictive Value Pknots:
0.630
PknotsRG:
0.622
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 8.75723753567e-06
|
=
Cylofold vs Pknots
Matthews Correlation Coefficient Cylofold:
0.669
Pknots:
0.662
Sensitivity Cylofold:
0.648
Pknots:
0.676
Positive Predictive Value Cylofold:
0.700
Pknots:
0.659
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.028625909706
|
+
Pknots vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Pknots:
0.623
CentroidHomfold‑LAST:
0.577
Sensitivity Pknots:
0.646
CentroidHomfold‑LAST:
0.565
Positive Predictive Value Pknots:
0.612
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
=
Pknots vs RNASLOpt
Matthews Correlation Coefficient Pknots:
0.568
RNASLOpt:
0.558
Sensitivity Pknots:
0.609
RNASLOpt:
0.555
Positive Predictive Value Pknots:
0.541
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.00371712387624
|
-
McQFold vs Pknots
Matthews Correlation Coefficient McQFold:
0.680
Pknots:
0.648
Sensitivity McQFold:
0.680
Pknots:
0.676
Positive Predictive Value McQFold:
0.689
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs ProbKnot
Matthews Correlation Coefficient Pknots:
0.608
ProbKnot:
0.587
Sensitivity Pknots:
0.646
ProbKnot:
0.618
Positive Predictive Value Pknots:
0.582
ProbKnot:
0.567
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 7.27211512036e-08
|
+
Pknots vs UNAFold
Matthews Correlation Coefficient Pknots:
0.648
UNAFold:
0.627
Sensitivity Pknots:
0.676
UNAFold:
0.639
Positive Predictive Value Pknots:
0.630
UNAFold:
0.626
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 2.63254822069e-07
|
+
Pknots vs HotKnots
Matthews Correlation Coefficient Pknots:
0.648
HotKnots:
0.620
Sensitivity Pknots:
0.676
HotKnots:
0.648
Positive Predictive Value Pknots:
0.630
HotKnots:
0.604
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs RNAshapes
Matthews Correlation Coefficient Pknots:
0.648
RNAshapes:
0.621
Sensitivity Pknots:
0.676
RNAshapes:
0.628
Positive Predictive Value Pknots:
0.630
RNAshapes:
0.625
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs RNAfold
Matthews Correlation Coefficient Pknots:
0.648
RNAfold:
0.610
Sensitivity Pknots:
0.676
RNAfold:
0.624
Positive Predictive Value Pknots:
0.630
RNAfold:
0.607
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs Afold
Matthews Correlation Coefficient Pknots:
0.687
Afold:
0.594
Sensitivity Pknots:
0.712
Afold:
0.609
Positive Predictive Value Pknots:
0.673
Afold:
0.592
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Pknots vs RSpredict(20)
Matthews Correlation Coefficient Pknots:
0.590
RSpredict(20):
0.579
Sensitivity Pknots:
0.630
RSpredict(20):
0.527
Positive Predictive Value Pknots:
0.561
RSpredict(20):
0.645
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 7.70630550616e-06
|
-
Multilign(seed) vs Pknots
Matthews Correlation Coefficient Multilign(seed):
0.658
Pknots:
0.599
Sensitivity Multilign(seed):
0.608
Pknots:
0.631
Positive Predictive Value Multilign(seed):
0.721
Pknots:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.47054079186e-08
|
+
Pknots vs RNAsubopt
Matthews Correlation Coefficient Pknots:
0.648
RNAsubopt:
0.608
Sensitivity Pknots:
0.676
RNAsubopt:
0.626
Positive Predictive Value Pknots:
0.630
RNAsubopt:
0.602
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs Fold
Matthews Correlation Coefficient Pknots:
0.626
Fold:
0.554
Sensitivity Pknots:
0.663
Fold:
0.579
Positive Predictive Value Pknots:
0.601
Fold:
0.540
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
Pknots vs Vsfold4
Matthews Correlation Coefficient Pknots:
0.666
Vsfold4:
0.600
Sensitivity Pknots:
0.689
Vsfold4:
0.581
Positive Predictive Value Pknots:
0.653
Vsfold4:
0.631
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs RNASampler(seed)
Matthews Correlation Coefficient Pknots:
0.594
RNASampler(seed):
0.563
Sensitivity Pknots:
0.661
RNASampler(seed):
0.472
Positive Predictive Value Pknots:
0.542
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.02976601485e-08
|
+
Pknots vs Multilign(20)
Matthews Correlation Coefficient Pknots:
0.581
Multilign(20):
0.517
Sensitivity Pknots:
0.613
Multilign(20):
0.530
Positive Predictive Value Pknots:
0.560
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
+
Pknots vs Mastr(20)
Matthews Correlation Coefficient Pknots:
0.590
Mastr(20):
0.555
Sensitivity Pknots:
0.630
Mastr(20):
0.393
Positive Predictive Value Pknots:
0.561
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.52941956893e-07
|
+
Pknots vs Murlet(seed)
Matthews Correlation Coefficient Pknots:
0.641
Murlet(seed):
0.534
Sensitivity Pknots:
0.673
Murlet(seed):
0.349
Positive Predictive Value Pknots:
0.620
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Pknots vs Vsfold5
Matthews Correlation Coefficient Pknots:
0.663
Vsfold5:
0.565
Sensitivity Pknots:
0.684
Vsfold5:
0.563
Positive Predictive Value Pknots:
0.652
Vsfold5:
0.578
Number of pairs reference - predicted secondary structure: 37
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs Alterna
Matthews Correlation Coefficient Pknots:
0.748
Alterna:
0.647
Sensitivity Pknots:
0.746
Alterna:
0.636
Positive Predictive Value Pknots:
0.761
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
Pknots vs RDfolder
Matthews Correlation Coefficient Pknots:
0.729
RDfolder:
0.569
Sensitivity Pknots:
0.733
RDfolder:
0.510
Positive Predictive Value Pknots:
0.736
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Pknots vs MCFold
Matthews Correlation Coefficient Pknots:
0.616
MCFold:
0.465
Sensitivity Pknots:
0.651
MCFold:
0.510
Positive Predictive Value Pknots:
0.593
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Pknots vs RNAwolf
Matthews Correlation Coefficient Pknots:
0.597
RNAwolf:
0.449
Sensitivity Pknots:
0.632
RNAwolf:
0.461
Positive Predictive Value Pknots:
0.574
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Pknots vs RSpredict(seed)
Matthews Correlation Coefficient Pknots:
0.659
RSpredict(seed):
0.307
Sensitivity Pknots:
0.690
RSpredict(seed):
0.170
Positive Predictive Value Pknots:
0.638
RSpredict(seed):
0.573
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Pknots vs Carnac(seed)
Matthews Correlation Coefficient Pknots:
0.641
Carnac(seed):
0.200
Sensitivity Pknots:
0.673
Carnac(seed):
0.040
Positive Predictive Value Pknots:
0.620
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Pknots vs NanoFolder
Matthews Correlation Coefficient Pknots:
0.551
NanoFolder:
0.406
Sensitivity Pknots:
0.596
NanoFolder:
0.516
Positive Predictive Value Pknots:
0.519
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
+
Pknots vs PPfold(seed)
Matthews Correlation Coefficient Pknots:
0.609
PPfold(seed):
0.202
Sensitivity Pknots:
0.646
PPfold(seed):
0.066
Positive Predictive Value Pknots:
0.583
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
?
Pknots vs CMfinder(seed)
Matthews Correlation Coefficient Pknots:
N/A
CMfinder(seed):
N/A
Sensitivity Pknots:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Pknots:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Pknots vs PETfold_2.0(seed)
Matthews Correlation Coefficient Pknots:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Pknots:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Pknots:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Pknots vs DAFS(20)
Matthews Correlation Coefficient Pknots:
N/A
DAFS(20):
N/A
Sensitivity Pknots:
N/A
DAFS(20):
N/A
Positive Predictive Value Pknots:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Pknots vs PETfold_2.0(20)
Matthews Correlation Coefficient Pknots:
N/A
PETfold_2.0(20):
N/A
Sensitivity Pknots:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Pknots:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Pknots
Matthews Correlation Coefficient CMfinder(20):
0.580
Pknots:
0.502
Sensitivity CMfinder(20):
0.500
Pknots:
0.551
Positive Predictive Value CMfinder(20):
0.681
Pknots:
0.466
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Pknots vs CRWrnafold
Matthews Correlation Coefficient Pknots:
0.562
CRWrnafold:
0.502
Sensitivity Pknots:
0.585
CRWrnafold:
0.516
Positive Predictive Value Pknots:
0.554
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Pknots vs DAFS(seed)
Matthews Correlation Coefficient Pknots:
N/A
DAFS(seed):
N/A
Sensitivity Pknots:
N/A
DAFS(seed):
N/A
Positive Predictive Value Pknots:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Pknots vs Mastr(seed)
Matthews Correlation Coefficient Pknots:
0.659
Mastr(seed):
0.040
Sensitivity Pknots:
0.690
Mastr(seed):
0.004
Positive Predictive Value Pknots:
0.638
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
MaxExpect |
28
CentroidAlifold(seed) vs MaxExpect
Matthews Correlation Coefficient CentroidAlifold(seed):
0.780
MaxExpect:
0.598
Sensitivity CentroidAlifold(seed):
0.674
MaxExpect:
0.614
Positive Predictive Value CentroidAlifold(seed):
0.904
MaxExpect:
0.584
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
CentroidAlifold(20) vs MaxExpect
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
MaxExpect:
0.608
Sensitivity CentroidAlifold(20):
0.664
MaxExpect:
0.611
Positive Predictive Value CentroidAlifold(20):
0.900
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
16
PETfold_pre2.0(seed) vs MaxExpect
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
MaxExpect:
0.575
Sensitivity PETfold_pre2.0(seed):
0.802
MaxExpect:
0.585
Positive Predictive Value PETfold_pre2.0(seed):
0.863
MaxExpect:
0.566
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
24
RNAalifold(seed) vs MaxExpect
Matthews Correlation Coefficient RNAalifold(seed):
0.726
MaxExpect:
0.605
Sensitivity RNAalifold(seed):
0.607
MaxExpect:
0.621
Positive Predictive Value RNAalifold(seed):
0.869
MaxExpect:
0.592
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAalifold(20) vs MaxExpect
Matthews Correlation Coefficient RNAalifold(20):
0.733
MaxExpect:
0.608
Sensitivity RNAalifold(20):
0.654
MaxExpect:
0.611
Positive Predictive Value RNAalifold(20):
0.826
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
27
MXScarna(seed) vs MaxExpect
Matthews Correlation Coefficient MXScarna(seed):
0.732
MaxExpect:
0.600
Sensitivity MXScarna(seed):
0.692
MaxExpect:
0.615
Positive Predictive Value MXScarna(seed):
0.776
MaxExpect:
0.586
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
39
CentroidFold vs MaxExpect
Matthews Correlation Coefficient CentroidFold:
0.639
MaxExpect:
0.589
Sensitivity CentroidFold:
0.616
MaxExpect:
0.604
Positive Predictive Value CentroidFold:
0.664
MaxExpect:
0.576
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs MaxExpect
Matthews Correlation Coefficient PPfold(20):
0.668
MaxExpect:
0.487
Sensitivity PPfold(20):
0.614
MaxExpect:
0.498
Positive Predictive Value PPfold(20):
0.733
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
12
TurboFold(20) vs MaxExpect
Matthews Correlation Coefficient TurboFold(20):
0.636
MaxExpect:
0.487
Sensitivity TurboFold(20):
0.629
MaxExpect:
0.498
Positive Predictive Value TurboFold(20):
0.649
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
21
RNASampler(20) vs MaxExpect
Matthews Correlation Coefficient RNASampler(20):
0.692
MaxExpect:
0.608
Sensitivity RNASampler(20):
0.621
MaxExpect:
0.611
Positive Predictive Value RNASampler(20):
0.776
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
MXScarna(20) vs MaxExpect
Matthews Correlation Coefficient MXScarna(20):
0.678
MaxExpect:
0.608
Sensitivity MXScarna(20):
0.640
MaxExpect:
0.611
Positive Predictive Value MXScarna(20):
0.724
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
22
ContextFold vs MaxExpect
Matthews Correlation Coefficient ContextFold:
0.596
MaxExpect:
0.500
Sensitivity ContextFold:
0.588
MaxExpect:
0.514
Positive Predictive Value ContextFold:
0.604
MaxExpect:
0.487
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 1.07002995419e-07
|
24
IPknot vs MaxExpect
Matthews Correlation Coefficient IPknot:
0.600
MaxExpect:
0.511
Sensitivity IPknot:
0.560
MaxExpect:
0.525
Positive Predictive Value IPknot:
0.644
MaxExpect:
0.500
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
39
Contrafold vs MaxExpect
Matthews Correlation Coefficient Contrafold:
0.615
MaxExpect:
0.589
Sensitivity Contrafold:
0.628
MaxExpect:
0.604
Positive Predictive Value Contrafold:
0.603
MaxExpect:
0.576
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs MaxExpect
Matthews Correlation Coefficient Carnac(20):
0.641
MaxExpect:
0.608
Sensitivity Carnac(20):
0.456
MaxExpect:
0.611
Positive Predictive Value Carnac(20):
0.908
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
Murlet(20) vs MaxExpect
Matthews Correlation Coefficient Murlet(20):
0.625
MaxExpect:
0.608
Sensitivity Murlet(20):
0.530
MaxExpect:
0.611
Positive Predictive Value Murlet(20):
0.744
MaxExpect:
0.612
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.68553045316e-07
|
10
PETfold_pre2.0(20) vs MaxExpect
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
MaxExpect:
0.416
Sensitivity PETfold_pre2.0(20):
0.597
MaxExpect:
0.432
Positive Predictive Value PETfold_pre2.0(20):
0.654
MaxExpect:
0.410
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.68298245606e-09
|
39
MaxExpect vs Sfold
Matthews Correlation Coefficient MaxExpect:
0.589
Sfold:
0.541
Sensitivity MaxExpect:
0.604
Sfold:
0.536
Positive Predictive Value MaxExpect:
0.576
Sfold:
0.547
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
34
MaxExpect vs Pknots
Matthews Correlation Coefficient MaxExpect:
0.634
Pknots:
0.632
Sensitivity MaxExpect:
0.631
Pknots:
0.660
Positive Predictive Value MaxExpect:
0.647
Pknots:
0.614
Number of pairs reference - predicted secondary structure: 34
Wilcoxon single-rank test P-value: 0.252259869312
|
|
-
TurboFold(seed) vs MaxExpect
Matthews Correlation Coefficient TurboFold(seed):
0.610
MaxExpect:
0.553
Sensitivity TurboFold(seed):
0.598
MaxExpect:
0.551
Positive Predictive Value TurboFold(seed):
0.630
MaxExpect:
0.564
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
+
MaxExpect vs PknotsRG
Matthews Correlation Coefficient MaxExpect:
0.586
PknotsRG:
0.503
Sensitivity MaxExpect:
0.599
PknotsRG:
0.536
Positive Predictive Value MaxExpect:
0.574
PknotsRG:
0.473
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
Cylofold vs MaxExpect
Matthews Correlation Coefficient Cylofold:
0.669
MaxExpect:
0.639
Sensitivity Cylofold:
0.648
MaxExpect:
0.628
Positive Predictive Value Cylofold:
0.700
MaxExpect:
0.661
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
-
CentroidHomfold‑LAST vs MaxExpect
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
MaxExpect:
0.505
Sensitivity CentroidHomfold‑LAST:
0.565
MaxExpect:
0.511
Positive Predictive Value CentroidHomfold‑LAST:
0.601
MaxExpect:
0.513
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
-
RNASLOpt vs MaxExpect
Matthews Correlation Coefficient RNASLOpt:
0.558
MaxExpect:
0.506
Sensitivity RNASLOpt:
0.555
MaxExpect:
0.509
Positive Predictive Value RNASLOpt:
0.572
MaxExpect:
0.516
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MaxExpect vs McQFold
Matthews Correlation Coefficient MaxExpect:
0.589
McQFold:
0.458
Sensitivity MaxExpect:
0.604
McQFold:
0.469
Positive Predictive Value MaxExpect:
0.576
McQFold:
0.447
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MaxExpect vs ProbKnot
Matthews Correlation Coefficient MaxExpect:
0.528
ProbKnot:
0.524
Sensitivity MaxExpect:
0.548
ProbKnot:
0.554
Positive Predictive Value MaxExpect:
0.511
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs UNAFold
Matthews Correlation Coefficient MaxExpect:
0.589
UNAFold:
0.522
Sensitivity MaxExpect:
0.604
UNAFold:
0.546
Positive Predictive Value MaxExpect:
0.576
UNAFold:
0.499
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs HotKnots
Matthews Correlation Coefficient MaxExpect:
0.601
HotKnots:
0.571
Sensitivity MaxExpect:
0.613
HotKnots:
0.614
Positive Predictive Value MaxExpect:
0.596
HotKnots:
0.538
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs RNAshapes
Matthews Correlation Coefficient MaxExpect:
0.601
RNAshapes:
0.576
Sensitivity MaxExpect:
0.613
RNAshapes:
0.599
Positive Predictive Value MaxExpect:
0.596
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs RNAfold
Matthews Correlation Coefficient MaxExpect:
0.589
RNAfold:
0.512
Sensitivity MaxExpect:
0.604
RNAfold:
0.541
Positive Predictive Value MaxExpect:
0.576
RNAfold:
0.486
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs Afold
Matthews Correlation Coefficient MaxExpect:
0.568
Afold:
0.487
Sensitivity MaxExpect:
0.588
Afold:
0.520
Positive Predictive Value MaxExpect:
0.550
Afold:
0.457
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
+
MaxExpect vs RSpredict(20)
Matthews Correlation Coefficient MaxExpect:
0.608
RSpredict(20):
0.585
Sensitivity MaxExpect:
0.611
RSpredict(20):
0.534
Positive Predictive Value MaxExpect:
0.612
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.82343438163e-08
|
=
MaxExpect vs Multilign(seed)
Matthews Correlation Coefficient MaxExpect:
0.660
Multilign(seed):
0.658
Sensitivity MaxExpect:
0.635
Multilign(seed):
0.608
Positive Predictive Value MaxExpect:
0.696
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00166418410914
|
+
MaxExpect vs RNAsubopt
Matthews Correlation Coefficient MaxExpect:
0.601
RNAsubopt:
0.573
Sensitivity MaxExpect:
0.613
RNAsubopt:
0.607
Positive Predictive Value MaxExpect:
0.596
RNAsubopt:
0.548
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs Fold
Matthews Correlation Coefficient MaxExpect:
0.535
Fold:
0.490
Sensitivity MaxExpect:
0.555
Fold:
0.523
Positive Predictive Value MaxExpect:
0.518
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs Vsfold4
Matthews Correlation Coefficient MaxExpect:
0.593
Vsfold4:
0.523
Sensitivity MaxExpect:
0.611
Vsfold4:
0.522
Positive Predictive Value MaxExpect:
0.582
Vsfold4:
0.532
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs RNASampler(seed)
Matthews Correlation Coefficient MaxExpect:
0.561
RNASampler(seed):
0.540
Sensitivity MaxExpect:
0.578
RNASampler(seed):
0.457
Positive Predictive Value MaxExpect:
0.552
RNASampler(seed):
0.646
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.91187318367e-05
|
-
Multilign(20) vs MaxExpect
Matthews Correlation Coefficient Multilign(20):
0.517
MaxExpect:
0.483
Sensitivity Multilign(20):
0.530
MaxExpect:
0.504
Positive Predictive Value Multilign(20):
0.515
MaxExpect:
0.473
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.28800897435e-08
|
+
MaxExpect vs Mastr(20)
Matthews Correlation Coefficient MaxExpect:
0.608
Mastr(20):
0.508
Sensitivity MaxExpect:
0.611
Mastr(20):
0.329
Positive Predictive Value MaxExpect:
0.612
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
MaxExpect vs Murlet(seed)
Matthews Correlation Coefficient MaxExpect:
0.656
Murlet(seed):
0.529
Sensitivity MaxExpect:
0.647
Murlet(seed):
0.346
Positive Predictive Value MaxExpect:
0.673
Murlet(seed):
0.819
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
MaxExpect vs Vsfold5
Matthews Correlation Coefficient MaxExpect:
0.590
Vsfold5:
0.492
Sensitivity MaxExpect:
0.606
Vsfold5:
0.498
Positive Predictive Value MaxExpect:
0.582
Vsfold5:
0.495
Number of pairs reference - predicted secondary structure: 34
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
MaxExpect vs Alterna
Matthews Correlation Coefficient MaxExpect:
0.711
Alterna:
0.584
Sensitivity MaxExpect:
0.689
Alterna:
0.582
Positive Predictive Value MaxExpect:
0.745
Alterna:
0.604
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.16590079822e-09
|
+
MaxExpect vs RDfolder
Matthews Correlation Coefficient MaxExpect:
0.674
RDfolder:
0.535
Sensitivity MaxExpect:
0.661
RDfolder:
0.479
Positive Predictive Value MaxExpect:
0.702
RDfolder:
0.617
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
MaxExpect vs MCFold
Matthews Correlation Coefficient MaxExpect:
0.571
MCFold:
0.436
Sensitivity MaxExpect:
0.573
MCFold:
0.482
Positive Predictive Value MaxExpect:
0.580
MCFold:
0.408
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MaxExpect vs RNAwolf
Matthews Correlation Coefficient MaxExpect:
0.511
RNAwolf:
0.406
Sensitivity MaxExpect:
0.525
RNAwolf:
0.415
Positive Predictive Value MaxExpect:
0.500
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
MaxExpect vs RSpredict(seed)
Matthews Correlation Coefficient MaxExpect:
0.598
RSpredict(seed):
0.499
Sensitivity MaxExpect:
0.614
RSpredict(seed):
0.362
Positive Predictive Value MaxExpect:
0.584
RSpredict(seed):
0.690
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MaxExpect vs Carnac(seed)
Matthews Correlation Coefficient MaxExpect:
0.634
Carnac(seed):
0.499
Sensitivity MaxExpect:
0.638
Carnac(seed):
0.267
Positive Predictive Value MaxExpect:
0.632
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MaxExpect vs NanoFolder
Matthews Correlation Coefficient MaxExpect:
0.453
NanoFolder:
0.406
Sensitivity MaxExpect:
0.476
NanoFolder:
0.516
Positive Predictive Value MaxExpect:
0.444
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.60861252569e-06
|
+
MaxExpect vs PPfold(seed)
Matthews Correlation Coefficient MaxExpect:
0.566
PPfold(seed):
0.202
Sensitivity MaxExpect:
0.565
PPfold(seed):
0.066
Positive Predictive Value MaxExpect:
0.578
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.97012568641e-08
|
?
MaxExpect vs CMfinder(seed)
Matthews Correlation Coefficient MaxExpect:
N/A
CMfinder(seed):
N/A
Sensitivity MaxExpect:
N/A
CMfinder(seed):
N/A
Positive Predictive Value MaxExpect:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MaxExpect vs PETfold_2.0(seed)
Matthews Correlation Coefficient MaxExpect:
0.967
PETfold_2.0(seed):
0.831
Sensitivity MaxExpect:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value MaxExpect:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
MaxExpect vs DAFS(20)
Matthews Correlation Coefficient MaxExpect:
N/A
DAFS(20):
N/A
Sensitivity MaxExpect:
N/A
DAFS(20):
N/A
Positive Predictive Value MaxExpect:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MaxExpect vs PETfold_2.0(20)
Matthews Correlation Coefficient MaxExpect:
N/A
PETfold_2.0(20):
N/A
Sensitivity MaxExpect:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value MaxExpect:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs MaxExpect
Matthews Correlation Coefficient CMfinder(20):
0.580
MaxExpect:
0.352
Sensitivity CMfinder(20):
0.500
MaxExpect:
0.388
Positive Predictive Value CMfinder(20):
0.681
MaxExpect:
0.330
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs MaxExpect
Matthews Correlation Coefficient CRWrnafold:
0.502
MaxExpect:
0.468
Sensitivity CRWrnafold:
0.516
MaxExpect:
0.472
Positive Predictive Value CRWrnafold:
0.503
MaxExpect:
0.481
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
MaxExpect vs DAFS(seed)
Matthews Correlation Coefficient MaxExpect:
N/A
DAFS(seed):
N/A
Sensitivity MaxExpect:
N/A
DAFS(seed):
N/A
Positive Predictive Value MaxExpect:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
MaxExpect vs Mastr(seed)
Matthews Correlation Coefficient MaxExpect:
0.592
Mastr(seed):
0.038
Sensitivity MaxExpect:
0.607
Mastr(seed):
0.004
Positive Predictive Value MaxExpect:
0.583
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
TurboFold(seed) |
13
CentroidAlifold(seed) vs TurboFold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.735
TurboFold(seed):
0.610
Sensitivity CentroidAlifold(seed):
0.578
TurboFold(seed):
0.598
Positive Predictive Value CentroidAlifold(seed):
0.940
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
9
CentroidAlifold(20) vs TurboFold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.646
TurboFold(seed):
0.553
Sensitivity CentroidAlifold(20):
0.513
TurboFold(seed):
0.554
Positive Predictive Value CentroidAlifold(20):
0.820
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
PETfold_pre2.0(seed) vs TurboFold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.754
TurboFold(seed):
0.570
Sensitivity PETfold_pre2.0(seed):
0.679
TurboFold(seed):
0.564
Positive Predictive Value PETfold_pre2.0(seed):
0.842
TurboFold(seed):
0.585
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.36849473644e-08
|
13
RNAalifold(seed) vs TurboFold(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.620
TurboFold(seed):
0.610
Sensitivity RNAalifold(seed):
0.449
TurboFold(seed):
0.598
Positive Predictive Value RNAalifold(seed):
0.864
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00115292248678
|
9
RNAalifold(20) vs TurboFold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.589
TurboFold(seed):
0.553
Sensitivity RNAalifold(20):
0.544
TurboFold(seed):
0.554
Positive Predictive Value RNAalifold(20):
0.646
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
13
TurboFold(seed) vs MXScarna(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
MXScarna(seed):
0.585
Sensitivity TurboFold(seed):
0.598
MXScarna(seed):
0.527
Positive Predictive Value TurboFold(seed):
0.630
MXScarna(seed):
0.658
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.23753225208e-08
|
13
CentroidFold vs TurboFold(seed)
Matthews Correlation Coefficient CentroidFold:
0.629
TurboFold(seed):
0.610
Sensitivity CentroidFold:
0.601
TurboFold(seed):
0.598
Positive Predictive Value CentroidFold:
0.667
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.73552453119e-08
|
9
PPfold(20) vs TurboFold(seed)
Matthews Correlation Coefficient PPfold(20):
0.591
TurboFold(seed):
0.553
Sensitivity PPfold(20):
0.533
TurboFold(seed):
0.554
Positive Predictive Value PPfold(20):
0.662
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
TurboFold(20) vs TurboFold(seed)
Matthews Correlation Coefficient TurboFold(20):
0.562
TurboFold(seed):
0.553
Sensitivity TurboFold(20):
0.554
TurboFold(seed):
0.554
Positive Predictive Value TurboFold(20):
0.578
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
RNASampler(20) vs TurboFold(seed)
Matthews Correlation Coefficient RNASampler(20):
0.565
TurboFold(seed):
0.553
Sensitivity RNASampler(20):
0.518
TurboFold(seed):
0.554
Positive Predictive Value RNASampler(20):
0.623
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
TurboFold(seed) vs MXScarna(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
MXScarna(20):
0.525
Sensitivity TurboFold(seed):
0.554
MXScarna(20):
0.492
Positive Predictive Value TurboFold(seed):
0.560
MXScarna(20):
0.568
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
TurboFold(seed) vs ContextFold
Matthews Correlation Coefficient TurboFold(seed):
0.570
ContextFold:
0.515
Sensitivity TurboFold(seed):
0.564
ContextFold:
0.494
Positive Predictive Value TurboFold(seed):
0.585
ContextFold:
0.545
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
13
IPknot vs TurboFold(seed)
Matthews Correlation Coefficient IPknot:
0.619
TurboFold(seed):
0.610
Sensitivity IPknot:
0.595
TurboFold(seed):
0.598
Positive Predictive Value IPknot:
0.652
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.47747102805e-06
|
13
TurboFold(seed) vs Contrafold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Contrafold:
0.601
Sensitivity TurboFold(seed):
0.598
Contrafold:
0.605
Positive Predictive Value TurboFold(seed):
0.630
Contrafold:
0.607
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 7.17108686704e-05
|
9
TurboFold(seed) vs Carnac(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
Carnac(20):
0.546
Sensitivity TurboFold(seed):
0.554
Carnac(20):
0.349
Positive Predictive Value TurboFold(seed):
0.560
Carnac(20):
0.861
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
Murlet(20) vs TurboFold(seed)
Matthews Correlation Coefficient Murlet(20):
0.583
TurboFold(seed):
0.553
Sensitivity Murlet(20):
0.523
TurboFold(seed):
0.554
Positive Predictive Value Murlet(20):
0.658
TurboFold(seed):
0.560
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
7
PETfold_pre2.0(20) vs TurboFold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.490
TurboFold(seed):
0.468
Sensitivity PETfold_pre2.0(20):
0.465
TurboFold(seed):
0.479
Positive Predictive Value PETfold_pre2.0(20):
0.524
TurboFold(seed):
0.466
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
13
TurboFold(seed) vs Sfold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Sfold:
0.609
Sensitivity TurboFold(seed):
0.598
Sfold:
0.581
Positive Predictive Value TurboFold(seed):
0.630
Sfold:
0.647
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.0294771630115
|
13
TurboFold(seed) vs Pknots
Matthews Correlation Coefficient TurboFold(seed):
0.610
Pknots:
0.584
Sensitivity TurboFold(seed):
0.598
Pknots:
0.632
Positive Predictive Value TurboFold(seed):
0.630
Pknots:
0.548
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.67820377009e-05
|
13
TurboFold(seed) vs MaxExpect
Matthews Correlation Coefficient TurboFold(seed):
0.610
MaxExpect:
0.553
Sensitivity TurboFold(seed):
0.598
MaxExpect:
0.551
Positive Predictive Value TurboFold(seed):
0.630
MaxExpect:
0.564
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
|
-
PknotsRG vs TurboFold(seed)
Matthews Correlation Coefficient PknotsRG:
0.615
TurboFold(seed):
0.610
Sensitivity PknotsRG:
0.659
TurboFold(seed):
0.598
Positive Predictive Value PknotsRG:
0.582
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.000456986317391
|
?
TurboFold(seed) vs Cylofold
Matthews Correlation Coefficient TurboFold(seed):
0.667
Cylofold:
0.662
Sensitivity TurboFold(seed):
0.601
Cylofold:
0.614
Positive Predictive Value TurboFold(seed):
0.754
Cylofold:
0.729
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient TurboFold(seed):
0.575
CentroidHomfold‑LAST:
0.555
Sensitivity TurboFold(seed):
0.568
CentroidHomfold‑LAST:
0.538
Positive Predictive Value TurboFold(seed):
0.593
CentroidHomfold‑LAST:
0.583
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.80976983759e-06
|
+
TurboFold(seed) vs RNASLOpt
Matthews Correlation Coefficient TurboFold(seed):
0.570
RNASLOpt:
0.471
Sensitivity TurboFold(seed):
0.564
RNASLOpt:
0.469
Positive Predictive Value TurboFold(seed):
0.585
RNASLOpt:
0.483
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.68298245606e-09
|
=
McQFold vs TurboFold(seed)
Matthews Correlation Coefficient McQFold:
0.615
TurboFold(seed):
0.610
Sensitivity McQFold:
0.642
TurboFold(seed):
0.598
Positive Predictive Value McQFold:
0.597
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00721642488944
|
+
TurboFold(seed) vs ProbKnot
Matthews Correlation Coefficient TurboFold(seed):
0.610
ProbKnot:
0.544
Sensitivity TurboFold(seed):
0.598
ProbKnot:
0.574
Positive Predictive Value TurboFold(seed):
0.630
ProbKnot:
0.525
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
+
TurboFold(seed) vs UNAFold
Matthews Correlation Coefficient TurboFold(seed):
0.610
UNAFold:
0.529
Sensitivity TurboFold(seed):
0.598
UNAFold:
0.551
Positive Predictive Value TurboFold(seed):
0.630
UNAFold:
0.519
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
+
TurboFold(seed) vs HotKnots
Matthews Correlation Coefficient TurboFold(seed):
0.610
HotKnots:
0.580
Sensitivity TurboFold(seed):
0.598
HotKnots:
0.628
Positive Predictive Value TurboFold(seed):
0.630
HotKnots:
0.544
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.62861298049e-06
|
+
TurboFold(seed) vs RNAshapes
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAshapes:
0.582
Sensitivity TurboFold(seed):
0.598
RNAshapes:
0.605
Positive Predictive Value TurboFold(seed):
0.630
RNAshapes:
0.568
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.12160100812e-08
|
+
TurboFold(seed) vs RNAfold
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAfold:
0.580
Sensitivity TurboFold(seed):
0.598
RNAfold:
0.605
Positive Predictive Value TurboFold(seed):
0.630
RNAfold:
0.565
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
?
Afold vs TurboFold(seed)
Matthews Correlation Coefficient Afold:
0.524
TurboFold(seed):
0.409
Sensitivity Afold:
0.565
TurboFold(seed):
0.424
Positive Predictive Value Afold:
0.495
TurboFold(seed):
0.406
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs RSpredict(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
RSpredict(20):
0.469
Sensitivity TurboFold(seed):
0.554
RSpredict(20):
0.451
Positive Predictive Value TurboFold(seed):
0.560
RSpredict(20):
0.497
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs Multilign(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.667
Multilign(seed):
0.618
Sensitivity TurboFold(seed):
0.634
Multilign(seed):
0.568
Positive Predictive Value TurboFold(seed):
0.709
Multilign(seed):
0.683
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(seed) vs RNAsubopt
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAsubopt:
0.528
Sensitivity TurboFold(seed):
0.598
RNAsubopt:
0.561
Positive Predictive Value TurboFold(seed):
0.630
RNAsubopt:
0.508
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
+
TurboFold(seed) vs Fold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Fold:
0.484
Sensitivity TurboFold(seed):
0.598
Fold:
0.514
Positive Predictive Value TurboFold(seed):
0.630
Fold:
0.468
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
+
TurboFold(seed) vs Vsfold4
Matthews Correlation Coefficient TurboFold(seed):
0.550
Vsfold4:
0.460
Sensitivity TurboFold(seed):
0.548
Vsfold4:
0.457
Positive Predictive Value TurboFold(seed):
0.562
Vsfold4:
0.475
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.09606974296e-09
|
?
TurboFold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.501
RNASampler(seed):
0.488
Sensitivity TurboFold(seed):
0.517
RNASampler(seed):
0.421
Positive Predictive Value TurboFold(seed):
0.495
RNASampler(seed):
0.573
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs Multilign(20)
Matthews Correlation Coefficient TurboFold(seed):
0.563
Multilign(20):
0.500
Sensitivity TurboFold(seed):
0.572
Multilign(20):
0.518
Positive Predictive Value TurboFold(seed):
0.562
Multilign(20):
0.491
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs Mastr(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
Mastr(20):
0.470
Sensitivity TurboFold(seed):
0.554
Mastr(20):
0.287
Positive Predictive Value TurboFold(seed):
0.560
Mastr(20):
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(seed) vs Murlet(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Murlet(seed):
0.526
Sensitivity TurboFold(seed):
0.598
Murlet(seed):
0.341
Positive Predictive Value TurboFold(seed):
0.630
Murlet(seed):
0.821
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.3551590886e-08
|
+
TurboFold(seed) vs Vsfold5
Matthews Correlation Coefficient TurboFold(seed):
0.575
Vsfold5:
0.438
Sensitivity TurboFold(seed):
0.568
Vsfold5:
0.462
Positive Predictive Value TurboFold(seed):
0.593
Vsfold5:
0.429
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
?
Alterna vs TurboFold(seed)
Matthews Correlation Coefficient Alterna:
0.624
TurboFold(seed):
0.594
Sensitivity Alterna:
0.606
TurboFold(seed):
0.563
Positive Predictive Value Alterna:
0.662
TurboFold(seed):
0.645
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs RDfolder
Matthews Correlation Coefficient TurboFold(seed):
0.641
RDfolder:
0.451
Sensitivity TurboFold(seed):
0.577
RDfolder:
0.385
Positive Predictive Value TurboFold(seed):
0.728
RDfolder:
0.556
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(seed) vs MCFold
Matthews Correlation Coefficient TurboFold(seed):
0.556
MCFold:
0.379
Sensitivity TurboFold(seed):
0.551
MCFold:
0.428
Positive Predictive Value TurboFold(seed):
0.570
MCFold:
0.348
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
+
TurboFold(seed) vs RNAwolf
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAwolf:
0.379
Sensitivity TurboFold(seed):
0.598
RNAwolf:
0.395
Positive Predictive Value TurboFold(seed):
0.630
RNAwolf:
0.377
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
+
TurboFold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
RSpredict(seed):
0.278
Sensitivity TurboFold(seed):
0.598
RSpredict(seed):
0.152
Positive Predictive Value TurboFold(seed):
0.630
RSpredict(seed):
0.523
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 7.60513176667e-09
|
+
TurboFold(seed) vs Carnac(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Carnac(seed):
0.277
Sensitivity TurboFold(seed):
0.598
Carnac(seed):
0.078
Positive Predictive Value TurboFold(seed):
0.630
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
?
TurboFold(seed) vs NanoFolder
Matthews Correlation Coefficient TurboFold(seed):
0.448
NanoFolder:
0.318
Sensitivity TurboFold(seed):
0.464
NanoFolder:
0.421
Positive Predictive Value TurboFold(seed):
0.442
NanoFolder:
0.252
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
TurboFold(seed) vs PPfold(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
PPfold(seed):
0.233
Sensitivity TurboFold(seed):
0.598
PPfold(seed):
0.088
Positive Predictive Value TurboFold(seed):
0.630
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.64481516727e-08
|
?
TurboFold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient TurboFold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity TurboFold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value TurboFold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.967
PETfold_2.0(seed):
0.831
Sensitivity TurboFold(seed):
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value TurboFold(seed):
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs DAFS(20)
Matthews Correlation Coefficient TurboFold(seed):
N/A
DAFS(20):
N/A
Sensitivity TurboFold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value TurboFold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
TurboFold(seed) vs CMfinder(20)
Matthews Correlation Coefficient TurboFold(seed):
0.357
CMfinder(20):
0.342
Sensitivity TurboFold(seed):
0.441
CMfinder(20):
0.324
Positive Predictive Value TurboFold(seed):
0.294
CMfinder(20):
0.367
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs TurboFold(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
TurboFold(seed):
0.496
Sensitivity CRWrnafold:
0.524
TurboFold(seed):
0.476
Positive Predictive Value CRWrnafold:
0.516
TurboFold(seed):
0.531
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
TurboFold(seed) vs DAFS(seed)
Matthews Correlation Coefficient TurboFold(seed):
N/A
DAFS(seed):
N/A
Sensitivity TurboFold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value TurboFold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
TurboFold(seed) vs Mastr(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Mastr(seed):
0.060
Sensitivity TurboFold(seed):
0.598
Mastr(seed):
0.010
Positive Predictive Value TurboFold(seed):
0.630
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.50323628132e-08
|
PknotsRG |
29
CentroidAlifold(seed) vs PknotsRG
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
PknotsRG:
0.610
Sensitivity CentroidAlifold(seed):
0.584
PknotsRG:
0.653
Positive Predictive Value CentroidAlifold(seed):
0.900
PknotsRG:
0.577
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
CentroidAlifold(20) vs PknotsRG
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
PknotsRG:
0.598
Sensitivity CentroidAlifold(20):
0.664
PknotsRG:
0.633
Positive Predictive Value CentroidAlifold(20):
0.900
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
15
PETfold_pre2.0(seed) vs PknotsRG
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
PknotsRG:
0.569
Sensitivity PETfold_pre2.0(seed):
0.726
PknotsRG:
0.615
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PknotsRG:
0.536
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
24
RNAalifold(seed) vs PknotsRG
Matthews Correlation Coefficient RNAalifold(seed):
0.644
PknotsRG:
0.624
Sensitivity RNAalifold(seed):
0.478
PknotsRG:
0.668
Positive Predictive Value RNAalifold(seed):
0.874
PknotsRG:
0.589
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 8.64649098287e-07
|
21
RNAalifold(20) vs PknotsRG
Matthews Correlation Coefficient RNAalifold(20):
0.733
PknotsRG:
0.598
Sensitivity RNAalifold(20):
0.654
PknotsRG:
0.633
Positive Predictive Value RNAalifold(20):
0.826
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
28
MXScarna(seed) vs PknotsRG
Matthews Correlation Coefficient MXScarna(seed):
0.687
PknotsRG:
0.610
Sensitivity MXScarna(seed):
0.636
PknotsRG:
0.652
Positive Predictive Value MXScarna(seed):
0.748
PknotsRG:
0.576
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
41
CentroidFold vs PknotsRG
Matthews Correlation Coefficient CentroidFold:
0.597
PknotsRG:
0.481
Sensitivity CentroidFold:
0.585
PknotsRG:
0.529
Positive Predictive Value CentroidFold:
0.609
PknotsRG:
0.437
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs PknotsRG
Matthews Correlation Coefficient PPfold(20):
0.668
PknotsRG:
0.526
Sensitivity PPfold(20):
0.614
PknotsRG:
0.579
Positive Predictive Value PPfold(20):
0.733
PknotsRG:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.39551335374e-08
|
12
TurboFold(20) vs PknotsRG
Matthews Correlation Coefficient TurboFold(20):
0.636
PknotsRG:
0.526
Sensitivity TurboFold(20):
0.629
PknotsRG:
0.579
Positive Predictive Value TurboFold(20):
0.649
PknotsRG:
0.487
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
21
RNASampler(20) vs PknotsRG
Matthews Correlation Coefficient RNASampler(20):
0.692
PknotsRG:
0.598
Sensitivity RNASampler(20):
0.621
PknotsRG:
0.633
Positive Predictive Value RNASampler(20):
0.776
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
MXScarna(20) vs PknotsRG
Matthews Correlation Coefficient MXScarna(20):
0.678
PknotsRG:
0.598
Sensitivity MXScarna(20):
0.640
PknotsRG:
0.633
Positive Predictive Value MXScarna(20):
0.724
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
PknotsRG vs ContextFold
Matthews Correlation Coefficient PknotsRG:
0.473
ContextFold:
0.436
Sensitivity PknotsRG:
0.514
ContextFold:
0.429
Positive Predictive Value PknotsRG:
0.436
ContextFold:
0.444
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.73968271671e-07
|
23
IPknot vs PknotsRG
Matthews Correlation Coefficient IPknot:
0.518
PknotsRG:
0.492
Sensitivity IPknot:
0.468
PknotsRG:
0.531
Positive Predictive Value IPknot:
0.574
PknotsRG:
0.458
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.41251352392e-08
|
45
Contrafold vs PknotsRG
Matthews Correlation Coefficient Contrafold:
0.599
PknotsRG:
0.481
Sensitivity Contrafold:
0.622
PknotsRG:
0.523
Positive Predictive Value Contrafold:
0.577
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs PknotsRG
Matthews Correlation Coefficient Carnac(20):
0.641
PknotsRG:
0.598
Sensitivity Carnac(20):
0.456
PknotsRG:
0.633
Positive Predictive Value Carnac(20):
0.908
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
Murlet(20) vs PknotsRG
Matthews Correlation Coefficient Murlet(20):
0.625
PknotsRG:
0.598
Sensitivity Murlet(20):
0.530
PknotsRG:
0.633
Positive Predictive Value Murlet(20):
0.744
PknotsRG:
0.571
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.88703312273e-08
|
10
PETfold_pre2.0(20) vs PknotsRG
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
PknotsRG:
0.466
Sensitivity PETfold_pre2.0(20):
0.597
PknotsRG:
0.529
Positive Predictive Value PETfold_pre2.0(20):
0.654
PknotsRG:
0.419
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
45
Sfold vs PknotsRG
Matthews Correlation Coefficient Sfold:
0.515
PknotsRG:
0.481
Sensitivity Sfold:
0.517
PknotsRG:
0.523
Positive Predictive Value Sfold:
0.513
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs PknotsRG
Matthews Correlation Coefficient Pknots:
0.648
PknotsRG:
0.634
Sensitivity Pknots:
0.676
PknotsRG:
0.658
Positive Predictive Value Pknots:
0.630
PknotsRG:
0.622
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 8.75723753567e-06
|
38
MaxExpect vs PknotsRG
Matthews Correlation Coefficient MaxExpect:
0.586
PknotsRG:
0.503
Sensitivity MaxExpect:
0.599
PknotsRG:
0.536
Positive Predictive Value MaxExpect:
0.574
PknotsRG:
0.473
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
PknotsRG vs TurboFold(seed)
Matthews Correlation Coefficient PknotsRG:
0.615
TurboFold(seed):
0.610
Sensitivity PknotsRG:
0.659
TurboFold(seed):
0.598
Positive Predictive Value PknotsRG:
0.582
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.000456986317391
|
|
-
Cylofold vs PknotsRG
Matthews Correlation Coefficient Cylofold:
0.669
PknotsRG:
0.658
Sensitivity Cylofold:
0.648
PknotsRG:
0.671
Positive Predictive Value Cylofold:
0.700
PknotsRG:
0.656
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 4.57669612521e-06
|
=
PknotsRG vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PknotsRG:
0.578
CentroidHomfold‑LAST:
0.577
Sensitivity PknotsRG:
0.613
CentroidHomfold‑LAST:
0.565
Positive Predictive Value PknotsRG:
0.558
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.00100125531872
|
=
PknotsRG vs RNASLOpt
Matthews Correlation Coefficient PknotsRG:
0.564
RNASLOpt:
0.558
Sensitivity PknotsRG:
0.606
RNASLOpt:
0.555
Positive Predictive Value PknotsRG:
0.534
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.00856511679236
|
+
PknotsRG vs McQFold
Matthews Correlation Coefficient PknotsRG:
0.481
McQFold:
0.400
Sensitivity PknotsRG:
0.523
McQFold:
0.379
Positive Predictive Value PknotsRG:
0.442
McQFold:
0.422
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
PknotsRG vs ProbKnot
Matthews Correlation Coefficient PknotsRG:
0.519
ProbKnot:
0.495
Sensitivity PknotsRG:
0.566
ProbKnot:
0.531
Positive Predictive Value PknotsRG:
0.479
ProbKnot:
0.463
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
UNAFold vs PknotsRG
Matthews Correlation Coefficient UNAFold:
0.488
PknotsRG:
0.481
Sensitivity UNAFold:
0.524
PknotsRG:
0.523
Positive Predictive Value UNAFold:
0.455
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 4.83792096436e-08
|
+
PknotsRG vs HotKnots
Matthews Correlation Coefficient PknotsRG:
0.599
HotKnots:
0.588
Sensitivity PknotsRG:
0.636
HotKnots:
0.627
Positive Predictive Value PknotsRG:
0.571
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
PknotsRG vs RNAshapes
Matthews Correlation Coefficient PknotsRG:
0.599
RNAshapes:
0.585
Sensitivity PknotsRG:
0.636
RNAshapes:
0.606
Positive Predictive Value PknotsRG:
0.571
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 6.06606238843e-08
|
-
RNAfold vs PknotsRG
Matthews Correlation Coefficient RNAfold:
0.484
PknotsRG:
0.481
Sensitivity RNAfold:
0.525
PknotsRG:
0.523
Positive Predictive Value RNAfold:
0.446
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 1.39704516867e-06
|
-
Afold vs PknotsRG
Matthews Correlation Coefficient Afold:
0.473
PknotsRG:
0.459
Sensitivity Afold:
0.516
PknotsRG:
0.502
Positive Predictive Value Afold:
0.434
PknotsRG:
0.419
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.62644058675e-08
|
+
PknotsRG vs RSpredict(20)
Matthews Correlation Coefficient PknotsRG:
0.598
RSpredict(20):
0.585
Sensitivity PknotsRG:
0.633
RSpredict(20):
0.534
Positive Predictive Value PknotsRG:
0.571
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000981259648556
|
=
Multilign(seed) vs PknotsRG
Matthews Correlation Coefficient Multilign(seed):
0.658
PknotsRG:
0.652
Sensitivity Multilign(seed):
0.608
PknotsRG:
0.665
Positive Predictive Value Multilign(seed):
0.721
PknotsRG:
0.648
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.0227611648726
|
+
PknotsRG vs RNAsubopt
Matthews Correlation Coefficient PknotsRG:
0.599
RNAsubopt:
0.581
Sensitivity PknotsRG:
0.636
RNAsubopt:
0.612
Positive Predictive Value PknotsRG:
0.571
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
+
PknotsRG vs Fold
Matthews Correlation Coefficient PknotsRG:
0.515
Fold:
0.467
Sensitivity PknotsRG:
0.560
Fold:
0.503
Positive Predictive Value PknotsRG:
0.476
Fold:
0.436
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
PknotsRG vs Vsfold4
Matthews Correlation Coefficient PknotsRG:
0.598
Vsfold4:
0.553
Sensitivity PknotsRG:
0.636
Vsfold4:
0.549
Positive Predictive Value PknotsRG:
0.570
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
PknotsRG vs RNASampler(seed)
Matthews Correlation Coefficient PknotsRG:
0.584
RNASampler(seed):
0.563
Sensitivity PknotsRG:
0.633
RNASampler(seed):
0.472
Positive Predictive Value PknotsRG:
0.547
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.37162975768e-06
|
+
PknotsRG vs Multilign(20)
Matthews Correlation Coefficient PknotsRG:
0.556
Multilign(20):
0.517
Sensitivity PknotsRG:
0.609
Multilign(20):
0.530
Positive Predictive Value PknotsRG:
0.519
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
+
PknotsRG vs Mastr(20)
Matthews Correlation Coefficient PknotsRG:
0.598
Mastr(20):
0.508
Sensitivity PknotsRG:
0.633
Mastr(20):
0.329
Positive Predictive Value PknotsRG:
0.571
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
PknotsRG vs Murlet(seed)
Matthews Correlation Coefficient PknotsRG:
0.686
Murlet(seed):
0.534
Sensitivity PknotsRG:
0.710
Murlet(seed):
0.349
Positive Predictive Value PknotsRG:
0.672
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
+
PknotsRG vs Vsfold5
Matthews Correlation Coefficient PknotsRG:
0.598
Vsfold5:
0.523
Sensitivity PknotsRG:
0.634
Vsfold5:
0.527
Positive Predictive Value PknotsRG:
0.571
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
PknotsRG vs Alterna
Matthews Correlation Coefficient PknotsRG:
0.648
Alterna:
0.647
Sensitivity PknotsRG:
0.641
Alterna:
0.636
Positive Predictive Value PknotsRG:
0.670
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0108253790337
|
+
PknotsRG vs RDfolder
Matthews Correlation Coefficient PknotsRG:
0.651
RDfolder:
0.569
Sensitivity PknotsRG:
0.653
RDfolder:
0.510
Positive Predictive Value PknotsRG:
0.663
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
PknotsRG vs MCFold
Matthews Correlation Coefficient PknotsRG:
0.613
MCFold:
0.465
Sensitivity PknotsRG:
0.644
MCFold:
0.510
Positive Predictive Value PknotsRG:
0.593
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
PknotsRG vs RNAwolf
Matthews Correlation Coefficient PknotsRG:
0.492
RNAwolf:
0.332
Sensitivity PknotsRG:
0.531
RNAwolf:
0.344
Positive Predictive Value PknotsRG:
0.458
RNAwolf:
0.323
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
PknotsRG vs RSpredict(seed)
Matthews Correlation Coefficient PknotsRG:
0.610
RSpredict(seed):
0.292
Sensitivity PknotsRG:
0.653
RSpredict(seed):
0.158
Positive Predictive Value PknotsRG:
0.577
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
PknotsRG vs Carnac(seed)
Matthews Correlation Coefficient PknotsRG:
0.686
Carnac(seed):
0.200
Sensitivity PknotsRG:
0.710
Carnac(seed):
0.040
Positive Predictive Value PknotsRG:
0.672
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
PknotsRG vs NanoFolder
Matthews Correlation Coefficient PknotsRG:
0.561
NanoFolder:
0.406
Sensitivity PknotsRG:
0.616
NanoFolder:
0.516
Positive Predictive Value PknotsRG:
0.520
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
+
PknotsRG vs PPfold(seed)
Matthews Correlation Coefficient PknotsRG:
0.597
PPfold(seed):
0.202
Sensitivity PknotsRG:
0.636
PPfold(seed):
0.066
Positive Predictive Value PknotsRG:
0.571
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
?
PknotsRG vs CMfinder(seed)
Matthews Correlation Coefficient PknotsRG:
N/A
CMfinder(seed):
N/A
Sensitivity PknotsRG:
N/A
CMfinder(seed):
N/A
Positive Predictive Value PknotsRG:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PknotsRG vs PETfold_2.0(seed)
Matthews Correlation Coefficient PknotsRG:
0.967
PETfold_2.0(seed):
0.831
Sensitivity PknotsRG:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value PknotsRG:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
PknotsRG vs DAFS(20)
Matthews Correlation Coefficient PknotsRG:
N/A
DAFS(20):
N/A
Sensitivity PknotsRG:
N/A
DAFS(20):
N/A
Positive Predictive Value PknotsRG:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PknotsRG vs PETfold_2.0(20)
Matthews Correlation Coefficient PknotsRG:
N/A
PETfold_2.0(20):
N/A
Sensitivity PknotsRG:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PknotsRG:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs PknotsRG
Matthews Correlation Coefficient CMfinder(20):
0.580
PknotsRG:
0.414
Sensitivity CMfinder(20):
0.500
PknotsRG:
0.480
Positive Predictive Value CMfinder(20):
0.681
PknotsRG:
0.367
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
PknotsRG vs CRWrnafold
Matthews Correlation Coefficient PknotsRG:
0.586
CRWrnafold:
0.502
Sensitivity PknotsRG:
0.616
CRWrnafold:
0.516
Positive Predictive Value PknotsRG:
0.570
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
PknotsRG vs DAFS(seed)
Matthews Correlation Coefficient PknotsRG:
N/A
DAFS(seed):
N/A
Sensitivity PknotsRG:
N/A
DAFS(seed):
N/A
Positive Predictive Value PknotsRG:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
PknotsRG vs Mastr(seed)
Matthews Correlation Coefficient PknotsRG:
0.610
Mastr(seed):
0.036
Sensitivity PknotsRG:
0.653
Mastr(seed):
0.004
Positive Predictive Value PknotsRG:
0.577
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
Cylofold |
12
CentroidAlifold(seed) vs Cylofold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.792
Cylofold:
0.677
Sensitivity CentroidAlifold(seed):
0.656
Cylofold:
0.646
Positive Predictive Value CentroidAlifold(seed):
0.962
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
9
CentroidAlifold(20) vs Cylofold
Matthews Correlation Coefficient CentroidAlifold(20):
0.845
Cylofold:
0.752
Sensitivity CentroidAlifold(20):
0.747
Cylofold:
0.734
Positive Predictive Value CentroidAlifold(20):
0.961
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
8
PETfold_pre2.0(seed) vs Cylofold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.779
Cylofold:
0.634
Sensitivity PETfold_pre2.0(seed):
0.716
Cylofold:
0.596
Positive Predictive Value PETfold_pre2.0(seed):
0.856
Cylofold:
0.690
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
11
RNAalifold(seed) vs Cylofold
Matthews Correlation Coefficient RNAalifold(seed):
0.701
Cylofold:
0.672
Sensitivity RNAalifold(seed):
0.557
Cylofold:
0.638
Positive Predictive Value RNAalifold(seed):
0.889
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.82148498286e-05
|
9
RNAalifold(20) vs Cylofold
Matthews Correlation Coefficient RNAalifold(20):
0.798
Cylofold:
0.752
Sensitivity RNAalifold(20):
0.707
Cylofold:
0.734
Positive Predictive Value RNAalifold(20):
0.905
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
12
MXScarna(seed) vs Cylofold
Matthews Correlation Coefficient MXScarna(seed):
0.687
Cylofold:
0.677
Sensitivity MXScarna(seed):
0.640
Cylofold:
0.646
Positive Predictive Value MXScarna(seed):
0.746
Cylofold:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.000544433348394
|
19
CentroidFold vs Cylofold
Matthews Correlation Coefficient CentroidFold:
0.742
Cylofold:
0.669
Sensitivity CentroidFold:
0.699
Cylofold:
0.648
Positive Predictive Value CentroidFold:
0.796
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.21671975982e-08
|
7
PPfold(20) vs Cylofold
Matthews Correlation Coefficient PPfold(20):
0.826
Cylofold:
0.780
Sensitivity PPfold(20):
0.752
Cylofold:
0.752
Positive Predictive Value PPfold(20):
0.915
Cylofold:
0.819
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
Cylofold vs TurboFold(20)
Matthews Correlation Coefficient Cylofold:
0.780
TurboFold(20):
0.777
Sensitivity Cylofold:
0.752
TurboFold(20):
0.713
Positive Predictive Value Cylofold:
0.819
TurboFold(20):
0.855
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
9
RNASampler(20) vs Cylofold
Matthews Correlation Coefficient RNASampler(20):
0.768
Cylofold:
0.752
Sensitivity RNASampler(20):
0.681
Cylofold:
0.734
Positive Predictive Value RNASampler(20):
0.872
Cylofold:
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
Cylofold vs MXScarna(20)
Matthews Correlation Coefficient Cylofold:
0.752
MXScarna(20):
0.741
Sensitivity Cylofold:
0.734
MXScarna(20):
0.681
Positive Predictive Value Cylofold:
0.778
MXScarna(20):
0.813
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
12
ContextFold vs Cylofold
Matthews Correlation Coefficient ContextFold:
0.683
Cylofold:
0.603
Sensitivity ContextFold:
0.638
Cylofold:
0.583
Positive Predictive Value ContextFold:
0.743
Cylofold:
0.640
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
14
IPknot vs Cylofold
Matthews Correlation Coefficient IPknot:
0.702
Cylofold:
0.639
Sensitivity IPknot:
0.663
Cylofold:
0.615
Positive Predictive Value IPknot:
0.755
Cylofold:
0.678
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
19
Contrafold vs Cylofold
Matthews Correlation Coefficient Contrafold:
0.712
Cylofold:
0.669
Sensitivity Contrafold:
0.708
Cylofold:
0.648
Positive Predictive Value Contrafold:
0.725
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
9
Cylofold vs Carnac(20)
Matthews Correlation Coefficient Cylofold:
0.752
Carnac(20):
0.643
Sensitivity Cylofold:
0.734
Carnac(20):
0.472
Positive Predictive Value Cylofold:
0.778
Carnac(20):
0.885
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
Cylofold vs Murlet(20)
Matthews Correlation Coefficient Cylofold:
0.752
Murlet(20):
0.674
Sensitivity Cylofold:
0.734
Murlet(20):
0.581
Positive Predictive Value Cylofold:
0.778
Murlet(20):
0.792
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
5
PETfold_pre2.0(20) vs Cylofold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.833
Cylofold:
0.772
Sensitivity PETfold_pre2.0(20):
0.769
Cylofold:
0.750
Positive Predictive Value PETfold_pre2.0(20):
0.909
Cylofold:
0.804
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
19
Sfold vs Cylofold
Matthews Correlation Coefficient Sfold:
0.669
Cylofold:
0.669
Sensitivity Sfold:
0.628
Cylofold:
0.648
Positive Predictive Value Sfold:
0.724
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.573619169352
|
19
Cylofold vs Pknots
Matthews Correlation Coefficient Cylofold:
0.669
Pknots:
0.662
Sensitivity Cylofold:
0.648
Pknots:
0.676
Positive Predictive Value Cylofold:
0.700
Pknots:
0.659
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.028625909706
|
19
Cylofold vs MaxExpect
Matthews Correlation Coefficient Cylofold:
0.669
MaxExpect:
0.639
Sensitivity Cylofold:
0.648
MaxExpect:
0.628
Positive Predictive Value Cylofold:
0.700
MaxExpect:
0.661
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
7
TurboFold(seed) vs Cylofold
Matthews Correlation Coefficient TurboFold(seed):
0.667
Cylofold:
0.662
Sensitivity TurboFold(seed):
0.601
Cylofold:
0.614
Positive Predictive Value TurboFold(seed):
0.754
Cylofold:
0.729
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
19
Cylofold vs PknotsRG
Matthews Correlation Coefficient Cylofold:
0.669
PknotsRG:
0.658
Sensitivity Cylofold:
0.648
PknotsRG:
0.671
Positive Predictive Value Cylofold:
0.700
PknotsRG:
0.656
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 4.57669612521e-06
|
|
+
Cylofold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Cylofold:
0.632
CentroidHomfold‑LAST:
0.597
Sensitivity Cylofold:
0.605
CentroidHomfold‑LAST:
0.573
Positive Predictive Value Cylofold:
0.675
CentroidHomfold‑LAST:
0.639
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.79286688101e-07
|
+
Cylofold vs RNASLOpt
Matthews Correlation Coefficient Cylofold:
0.603
RNASLOpt:
0.540
Sensitivity Cylofold:
0.583
RNASLOpt:
0.506
Positive Predictive Value Cylofold:
0.640
RNASLOpt:
0.595
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
-
McQFold vs Cylofold
Matthews Correlation Coefficient McQFold:
0.720
Cylofold:
0.669
Sensitivity McQFold:
0.706
Cylofold:
0.648
Positive Predictive Value McQFold:
0.743
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
+
Cylofold vs ProbKnot
Matthews Correlation Coefficient Cylofold:
0.654
ProbKnot:
0.618
Sensitivity Cylofold:
0.634
ProbKnot:
0.637
Positive Predictive Value Cylofold:
0.685
ProbKnot:
0.611
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
+
Cylofold vs UNAFold
Matthews Correlation Coefficient Cylofold:
0.669
UNAFold:
0.634
Sensitivity Cylofold:
0.648
UNAFold:
0.637
Positive Predictive Value Cylofold:
0.700
UNAFold:
0.643
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
+
Cylofold vs HotKnots
Matthews Correlation Coefficient Cylofold:
0.669
HotKnots:
0.662
Sensitivity Cylofold:
0.648
HotKnots:
0.685
Positive Predictive Value Cylofold:
0.700
HotKnots:
0.651
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.62963406642e-06
|
+
Cylofold vs RNAshapes
Matthews Correlation Coefficient Cylofold:
0.669
RNAshapes:
0.627
Sensitivity Cylofold:
0.648
RNAshapes:
0.625
Positive Predictive Value Cylofold:
0.700
RNAshapes:
0.640
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
+
Cylofold vs RNAfold
Matthews Correlation Coefficient Cylofold:
0.669
RNAfold:
0.609
Sensitivity Cylofold:
0.648
RNAfold:
0.614
Positive Predictive Value Cylofold:
0.700
RNAfold:
0.617
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
+
Cylofold vs Afold
Matthews Correlation Coefficient Cylofold:
0.647
Afold:
0.632
Sensitivity Cylofold:
0.649
Afold:
0.649
Positive Predictive Value Cylofold:
0.655
Afold:
0.627
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.99684630116e-06
|
?
Cylofold vs RSpredict(20)
Matthews Correlation Coefficient Cylofold:
0.752
RSpredict(20):
0.633
Sensitivity Cylofold:
0.734
RSpredict(20):
0.576
Positive Predictive Value Cylofold:
0.778
RSpredict(20):
0.706
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs Cylofold
Matthews Correlation Coefficient Multilign(seed):
0.637
Cylofold:
0.557
Sensitivity Multilign(seed):
0.578
Cylofold:
0.509
Positive Predictive Value Multilign(seed):
0.715
Cylofold:
0.626
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Cylofold vs RNAsubopt
Matthews Correlation Coefficient Cylofold:
0.669
RNAsubopt:
0.647
Sensitivity Cylofold:
0.648
RNAsubopt:
0.653
Positive Predictive Value Cylofold:
0.700
RNAsubopt:
0.653
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 6.51352570602e-08
|
+
Cylofold vs Fold
Matthews Correlation Coefficient Cylofold:
0.669
Fold:
0.588
Sensitivity Cylofold:
0.648
Fold:
0.595
Positive Predictive Value Cylofold:
0.700
Fold:
0.594
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.60448791174e-08
|
+
Cylofold vs Vsfold4
Matthews Correlation Coefficient Cylofold:
0.693
Vsfold4:
0.598
Sensitivity Cylofold:
0.681
Vsfold4:
0.577
Positive Predictive Value Cylofold:
0.716
Vsfold4:
0.632
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
?
Cylofold vs RNASampler(seed)
Matthews Correlation Coefficient Cylofold:
0.614
RNASampler(seed):
0.591
Sensitivity Cylofold:
0.611
RNASampler(seed):
0.468
Positive Predictive Value Cylofold:
0.626
RNASampler(seed):
0.756
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Cylofold vs Multilign(20)
Matthews Correlation Coefficient Cylofold:
0.780
Multilign(20):
0.599
Sensitivity Cylofold:
0.752
Multilign(20):
0.567
Positive Predictive Value Cylofold:
0.819
Multilign(20):
0.650
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
Cylofold vs Mastr(20)
Matthews Correlation Coefficient Cylofold:
0.752
Mastr(20):
0.517
Sensitivity Cylofold:
0.734
Mastr(20):
0.332
Positive Predictive Value Cylofold:
0.778
Mastr(20):
0.817
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
Cylofold vs Murlet(seed)
Matthews Correlation Coefficient Cylofold:
0.672
Murlet(seed):
0.495
Sensitivity Cylofold:
0.638
Murlet(seed):
0.331
Positive Predictive Value Cylofold:
0.718
Murlet(seed):
0.754
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
+
Cylofold vs Vsfold5
Matthews Correlation Coefficient Cylofold:
0.669
Vsfold5:
0.573
Sensitivity Cylofold:
0.648
Vsfold5:
0.568
Positive Predictive Value Cylofold:
0.700
Vsfold5:
0.591
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
?
Cylofold vs Alterna
Matthews Correlation Coefficient Cylofold:
0.690
Alterna:
0.560
Sensitivity Cylofold:
0.657
Alterna:
0.552
Positive Predictive Value Cylofold:
0.739
Alterna:
0.587
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Cylofold vs RDfolder
Matthews Correlation Coefficient Cylofold:
0.680
RDfolder:
0.457
Sensitivity Cylofold:
0.657
RDfolder:
0.402
Positive Predictive Value Cylofold:
0.717
RDfolder:
0.543
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.72523032126e-08
|
+
Cylofold vs MCFold
Matthews Correlation Coefficient Cylofold:
0.678
MCFold:
0.512
Sensitivity Cylofold:
0.659
MCFold:
0.543
Positive Predictive Value Cylofold:
0.706
MCFold:
0.497
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
+
Cylofold vs RNAwolf
Matthews Correlation Coefficient Cylofold:
0.639
RNAwolf:
0.468
Sensitivity Cylofold:
0.615
RNAwolf:
0.455
Positive Predictive Value Cylofold:
0.678
RNAwolf:
0.502
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
+
Cylofold vs RSpredict(seed)
Matthews Correlation Coefficient Cylofold:
0.677
RSpredict(seed):
0.262
Sensitivity Cylofold:
0.646
RSpredict(seed):
0.146
Positive Predictive Value Cylofold:
0.718
RSpredict(seed):
0.489
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
+
Cylofold vs Carnac(seed)
Matthews Correlation Coefficient Cylofold:
0.672
Carnac(seed):
0.117
Sensitivity Cylofold:
0.638
Carnac(seed):
0.014
Positive Predictive Value Cylofold:
0.718
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
?
Cylofold vs NanoFolder
Matthews Correlation Coefficient Cylofold:
0.578
NanoFolder:
0.477
Sensitivity Cylofold:
0.574
NanoFolder:
0.551
Positive Predictive Value Cylofold:
0.600
NanoFolder:
0.434
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Cylofold vs PPfold(seed)
Matthews Correlation Coefficient Cylofold:
0.671
PPfold(seed):
0.136
Sensitivity Cylofold:
0.631
PPfold(seed):
0.025
Positive Predictive Value Cylofold:
0.727
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
?
Cylofold vs CMfinder(seed)
Matthews Correlation Coefficient Cylofold:
N/A
CMfinder(seed):
N/A
Sensitivity Cylofold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Cylofold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Cylofold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Cylofold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Cylofold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Cylofold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Cylofold vs DAFS(20)
Matthews Correlation Coefficient Cylofold:
N/A
DAFS(20):
N/A
Sensitivity Cylofold:
N/A
DAFS(20):
N/A
Positive Predictive Value Cylofold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Cylofold vs PETfold_2.0(20)
Matthews Correlation Coefficient Cylofold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Cylofold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Cylofold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Cylofold vs CMfinder(20)
Matthews Correlation Coefficient Cylofold:
0.838
CMfinder(20):
0.696
Sensitivity Cylofold:
0.822
CMfinder(20):
0.511
Positive Predictive Value Cylofold:
0.860
CMfinder(20):
0.958
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
Cylofold vs CRWrnafold
Matthews Correlation Coefficient Cylofold:
0.624
CRWrnafold:
0.563
Sensitivity Cylofold:
0.619
CRWrnafold:
0.554
Positive Predictive Value Cylofold:
0.647
CRWrnafold:
0.592
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
Cylofold vs DAFS(seed)
Matthews Correlation Coefficient Cylofold:
N/A
DAFS(seed):
N/A
Sensitivity Cylofold:
N/A
DAFS(seed):
N/A
Positive Predictive Value Cylofold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Cylofold vs Mastr(seed)
Matthews Correlation Coefficient Cylofold:
0.677
Mastr(seed):
0.000
Sensitivity Cylofold:
0.646
Mastr(seed):
0.000
Positive Predictive Value Cylofold:
0.718
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
CentroidHomfold‑LAST |
15
CentroidAlifold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidAlifold(seed):
0.728
CentroidHomfold‑LAST:
0.579
Sensitivity CentroidAlifold(seed):
0.565
CentroidHomfold‑LAST:
0.583
Positive Predictive Value CentroidAlifold(seed):
0.945
CentroidHomfold‑LAST:
0.586
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
11
CentroidAlifold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidAlifold(20):
0.740
CentroidHomfold‑LAST:
0.572
Sensitivity CentroidAlifold(20):
0.635
CentroidHomfold‑LAST:
0.578
Positive Predictive Value CentroidAlifold(20):
0.869
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
13
PETfold_pre2.0(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.790
CentroidHomfold‑LAST:
0.543
Sensitivity PETfold_pre2.0(seed):
0.732
CentroidHomfold‑LAST:
0.561
Positive Predictive Value PETfold_pre2.0(seed):
0.858
CentroidHomfold‑LAST:
0.538
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
13
RNAalifold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNAalifold(seed):
0.644
CentroidHomfold‑LAST:
0.585
Sensitivity RNAalifold(seed):
0.481
CentroidHomfold‑LAST:
0.573
Positive Predictive Value RNAalifold(seed):
0.870
CentroidHomfold‑LAST:
0.606
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
11
RNAalifold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNAalifold(20):
0.689
CentroidHomfold‑LAST:
0.572
Sensitivity RNAalifold(20):
0.643
CentroidHomfold‑LAST:
0.578
Positive Predictive Value RNAalifold(20):
0.744
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
14
MXScarna(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient MXScarna(seed):
0.597
CentroidHomfold‑LAST:
0.569
Sensitivity MXScarna(seed):
0.541
CentroidHomfold‑LAST:
0.570
Positive Predictive Value MXScarna(seed):
0.669
CentroidHomfold‑LAST:
0.579
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 5.12463712669e-08
|
19
CentroidFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CentroidFold:
0.624
CentroidHomfold‑LAST:
0.577
Sensitivity CentroidFold:
0.608
CentroidHomfold‑LAST:
0.565
Positive Predictive Value CentroidFold:
0.650
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
11
PPfold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PPfold(20):
0.700
CentroidHomfold‑LAST:
0.572
Sensitivity PPfold(20):
0.652
CentroidHomfold‑LAST:
0.578
Positive Predictive Value PPfold(20):
0.758
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
11
TurboFold(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient TurboFold(20):
0.653
CentroidHomfold‑LAST:
0.572
Sensitivity TurboFold(20):
0.652
CentroidHomfold‑LAST:
0.578
Positive Predictive Value TurboFold(20):
0.661
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
11
RNASampler(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNASampler(20):
0.662
CentroidHomfold‑LAST:
0.572
Sensitivity RNASampler(20):
0.617
CentroidHomfold‑LAST:
0.578
Positive Predictive Value RNASampler(20):
0.717
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.69977563177e-09
|
11
MXScarna(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient MXScarna(20):
0.628
CentroidHomfold‑LAST:
0.572
Sensitivity MXScarna(20):
0.600
CentroidHomfold‑LAST:
0.578
Positive Predictive Value MXScarna(20):
0.667
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.84090256161e-09
|
17
ContextFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient ContextFold:
0.617
CentroidHomfold‑LAST:
0.546
Sensitivity ContextFold:
0.596
CentroidHomfold‑LAST:
0.544
Positive Predictive Value ContextFold:
0.648
CentroidHomfold‑LAST:
0.560
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
19
IPknot vs CentroidHomfold‑LAST
Matthews Correlation Coefficient IPknot:
0.622
CentroidHomfold‑LAST:
0.577
Sensitivity IPknot:
0.605
CentroidHomfold‑LAST:
0.565
Positive Predictive Value IPknot:
0.649
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
19
Contrafold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Contrafold:
0.611
CentroidHomfold‑LAST:
0.577
Sensitivity Contrafold:
0.620
CentroidHomfold‑LAST:
0.565
Positive Predictive Value Contrafold:
0.613
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
11
Carnac(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Carnac(20):
0.608
CentroidHomfold‑LAST:
0.572
Sensitivity Carnac(20):
0.439
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Carnac(20):
0.849
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.79203144115e-08
|
11
Murlet(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Murlet(20):
0.595
CentroidHomfold‑LAST:
0.572
Sensitivity Murlet(20):
0.539
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Murlet(20):
0.667
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.03109540436e-07
|
9
PETfold_pre2.0(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
CentroidHomfold‑LAST:
0.516
Sensitivity PETfold_pre2.0(20):
0.655
CentroidHomfold‑LAST:
0.542
Positive Predictive Value PETfold_pre2.0(20):
0.707
CentroidHomfold‑LAST:
0.500
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
19
CentroidHomfold‑LAST vs Sfold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Sfold:
0.556
Sensitivity CentroidHomfold‑LAST:
0.565
Sfold:
0.542
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Sfold:
0.583
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 5.57076602694e-08
|
19
Pknots vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Pknots:
0.623
CentroidHomfold‑LAST:
0.577
Sensitivity Pknots:
0.646
CentroidHomfold‑LAST:
0.565
Positive Predictive Value Pknots:
0.612
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
19
CentroidHomfold‑LAST vs MaxExpect
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
MaxExpect:
0.505
Sensitivity CentroidHomfold‑LAST:
0.565
MaxExpect:
0.511
Positive Predictive Value CentroidHomfold‑LAST:
0.601
MaxExpect:
0.513
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
11
TurboFold(seed) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient TurboFold(seed):
0.575
CentroidHomfold‑LAST:
0.555
Sensitivity TurboFold(seed):
0.568
CentroidHomfold‑LAST:
0.538
Positive Predictive Value TurboFold(seed):
0.593
CentroidHomfold‑LAST:
0.583
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.80976983759e-06
|
19
PknotsRG vs CentroidHomfold‑LAST
Matthews Correlation Coefficient PknotsRG:
0.578
CentroidHomfold‑LAST:
0.577
Sensitivity PknotsRG:
0.613
CentroidHomfold‑LAST:
0.565
Positive Predictive Value PknotsRG:
0.558
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.00100125531872
|
13
Cylofold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Cylofold:
0.632
CentroidHomfold‑LAST:
0.597
Sensitivity Cylofold:
0.605
CentroidHomfold‑LAST:
0.573
Positive Predictive Value Cylofold:
0.675
CentroidHomfold‑LAST:
0.639
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.79286688101e-07
|
|
=
RNASLOpt vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNASLOpt:
0.550
CentroidHomfold‑LAST:
0.546
Sensitivity RNASLOpt:
0.544
CentroidHomfold‑LAST:
0.544
Positive Predictive Value RNASLOpt:
0.569
CentroidHomfold‑LAST:
0.560
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0356345619152
|
-
McQFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient McQFold:
0.670
CentroidHomfold‑LAST:
0.577
Sensitivity McQFold:
0.686
CentroidHomfold‑LAST:
0.565
Positive Predictive Value McQFold:
0.664
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
+
CentroidHomfold‑LAST vs ProbKnot
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
ProbKnot:
0.512
Sensitivity CentroidHomfold‑LAST:
0.565
ProbKnot:
0.539
Positive Predictive Value CentroidHomfold‑LAST:
0.601
ProbKnot:
0.500
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
+
CentroidHomfold‑LAST vs UNAFold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
UNAFold:
0.494
Sensitivity CentroidHomfold‑LAST:
0.565
UNAFold:
0.514
Positive Predictive Value CentroidHomfold‑LAST:
0.601
UNAFold:
0.488
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
+
CentroidHomfold‑LAST vs HotKnots
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
HotKnots:
0.557
Sensitivity CentroidHomfold‑LAST:
0.565
HotKnots:
0.592
Positive Predictive Value CentroidHomfold‑LAST:
0.601
HotKnots:
0.537
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.06209234089e-07
|
+
CentroidHomfold‑LAST vs RNAshapes
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAshapes:
0.533
Sensitivity CentroidHomfold‑LAST:
0.565
RNAshapes:
0.549
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAshapes:
0.529
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
CentroidHomfold‑LAST vs RNAfold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAfold:
0.516
Sensitivity CentroidHomfold‑LAST:
0.565
RNAfold:
0.537
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAfold:
0.510
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
?
CentroidHomfold‑LAST vs Afold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.592
Afold:
0.494
Sensitivity CentroidHomfold‑LAST:
0.528
Afold:
0.523
Positive Predictive Value CentroidHomfold‑LAST:
0.674
Afold:
0.479
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidHomfold‑LAST vs RSpredict(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.572
RSpredict(20):
0.537
Sensitivity CentroidHomfold‑LAST:
0.578
RSpredict(20):
0.509
Positive Predictive Value CentroidHomfold‑LAST:
0.576
RSpredict(20):
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.38747296323e-06
|
?
CentroidHomfold‑LAST vs Multilign(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.643
Multilign(seed):
0.628
Sensitivity CentroidHomfold‑LAST:
0.600
Multilign(seed):
0.575
Positive Predictive Value CentroidHomfold‑LAST:
0.702
Multilign(seed):
0.697
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidHomfold‑LAST vs RNAsubopt
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAsubopt:
0.531
Sensitivity CentroidHomfold‑LAST:
0.565
RNAsubopt:
0.559
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAsubopt:
0.516
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
+
CentroidHomfold‑LAST vs Fold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Fold:
0.462
Sensitivity CentroidHomfold‑LAST:
0.565
Fold:
0.484
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Fold:
0.456
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
+
CentroidHomfold‑LAST vs Vsfold4
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.598
Vsfold4:
0.506
Sensitivity CentroidHomfold‑LAST:
0.572
Vsfold4:
0.499
Positive Predictive Value CentroidHomfold‑LAST:
0.636
Vsfold4:
0.527
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
?
CentroidHomfold‑LAST vs RNASampler(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNASampler(seed):
0.513
Sensitivity CentroidHomfold‑LAST:
0.549
RNASampler(seed):
0.429
Positive Predictive Value CentroidHomfold‑LAST:
0.613
RNASampler(seed):
0.624
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidHomfold‑LAST vs Multilign(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.572
Multilign(20):
0.517
Sensitivity CentroidHomfold‑LAST:
0.578
Multilign(20):
0.530
Positive Predictive Value CentroidHomfold‑LAST:
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.26036189514e-09
|
=
Mastr(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Mastr(20):
0.577
CentroidHomfold‑LAST:
0.572
Sensitivity Mastr(20):
0.409
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Mastr(20):
0.825
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.226383997251
|
+
CentroidHomfold‑LAST vs Murlet(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.585
Murlet(seed):
0.496
Sensitivity CentroidHomfold‑LAST:
0.573
Murlet(seed):
0.334
Positive Predictive Value CentroidHomfold‑LAST:
0.606
Murlet(seed):
0.748
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
+
CentroidHomfold‑LAST vs Vsfold5
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Vsfold5:
0.501
Sensitivity CentroidHomfold‑LAST:
0.565
Vsfold5:
0.519
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.7968284078e-08
|
?
Alterna vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Alterna:
0.568
CentroidHomfold‑LAST:
0.553
Sensitivity Alterna:
0.549
CentroidHomfold‑LAST:
0.451
Positive Predictive Value Alterna:
0.608
CentroidHomfold‑LAST:
0.698
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
+
CentroidHomfold‑LAST vs RDfolder
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.697
RDfolder:
0.515
Sensitivity CentroidHomfold‑LAST:
0.641
RDfolder:
0.455
Positive Predictive Value CentroidHomfold‑LAST:
0.771
RDfolder:
0.603
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
+
CentroidHomfold‑LAST vs MCFold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.523
MCFold:
0.414
Sensitivity CentroidHomfold‑LAST:
0.520
MCFold:
0.462
Positive Predictive Value CentroidHomfold‑LAST:
0.539
MCFold:
0.385
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
+
CentroidHomfold‑LAST vs RNAwolf
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAwolf:
0.466
Sensitivity CentroidHomfold‑LAST:
0.565
RNAwolf:
0.471
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAwolf:
0.476
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
+
CentroidHomfold‑LAST vs RSpredict(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
RSpredict(seed):
0.240
Sensitivity CentroidHomfold‑LAST:
0.583
RSpredict(seed):
0.132
Positive Predictive Value CentroidHomfold‑LAST:
0.586
RSpredict(seed):
0.454
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.59816551561e-08
|
+
CentroidHomfold‑LAST vs Carnac(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.585
Carnac(seed):
0.279
Sensitivity CentroidHomfold‑LAST:
0.573
Carnac(seed):
0.078
Positive Predictive Value CentroidHomfold‑LAST:
0.606
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
+
CentroidHomfold‑LAST vs NanoFolder
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.604
NanoFolder:
0.396
Sensitivity CentroidHomfold‑LAST:
0.572
NanoFolder:
0.502
Positive Predictive Value CentroidHomfold‑LAST:
0.647
NanoFolder:
0.326
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.29018360962e-08
|
+
CentroidHomfold‑LAST vs PPfold(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
PPfold(seed):
0.220
Sensitivity CentroidHomfold‑LAST:
0.583
PPfold(seed):
0.072
Positive Predictive Value CentroidHomfold‑LAST:
0.586
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
?
CentroidHomfold‑LAST vs CMfinder(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidHomfold‑LAST vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidHomfold‑LAST vs DAFS(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CentroidHomfold‑LAST vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CMfinder(20):
0.580
CentroidHomfold‑LAST:
0.423
Sensitivity CMfinder(20):
0.500
CentroidHomfold‑LAST:
0.490
Positive Predictive Value CMfinder(20):
0.681
CentroidHomfold‑LAST:
0.375
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidHomfold‑LAST vs CRWrnafold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.601
CRWrnafold:
0.502
Sensitivity CentroidHomfold‑LAST:
0.522
CRWrnafold:
0.516
Positive Predictive Value CentroidHomfold‑LAST:
0.703
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
CentroidHomfold‑LAST vs DAFS(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
CentroidHomfold‑LAST vs Mastr(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
Mastr(seed):
0.057
Sensitivity CentroidHomfold‑LAST:
0.583
Mastr(seed):
0.009
Positive Predictive Value CentroidHomfold‑LAST:
0.586
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
RNASLOpt |
15
CentroidAlifold(seed) vs RNASLOpt
Matthews Correlation Coefficient CentroidAlifold(seed):
0.702
RNASLOpt:
0.562
Sensitivity CentroidAlifold(seed):
0.532
RNASLOpt:
0.559
Positive Predictive Value CentroidAlifold(seed):
0.933
RNASLOpt:
0.576
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
10
CentroidAlifold(20) vs RNASLOpt
Matthews Correlation Coefficient CentroidAlifold(20):
0.672
RNASLOpt:
0.480
Sensitivity CentroidAlifold(20):
0.558
RNASLOpt:
0.500
Positive Predictive Value CentroidAlifold(20):
0.816
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
15
PETfold_pre2.0(seed) vs RNASLOpt
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNASLOpt:
0.562
Sensitivity PETfold_pre2.0(seed):
0.726
RNASLOpt:
0.559
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNASLOpt:
0.576
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
13
RNAalifold(seed) vs RNASLOpt
Matthews Correlation Coefficient RNAalifold(seed):
0.631
RNASLOpt:
0.527
Sensitivity RNAalifold(seed):
0.447
RNASLOpt:
0.520
Positive Predictive Value RNAalifold(seed):
0.899
RNASLOpt:
0.544
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
10
RNAalifold(20) vs RNASLOpt
Matthews Correlation Coefficient RNAalifold(20):
0.620
RNASLOpt:
0.480
Sensitivity RNAalifold(20):
0.573
RNASLOpt:
0.500
Positive Predictive Value RNAalifold(20):
0.678
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.45096400029e-08
|
14
MXScarna(seed) vs RNASLOpt
Matthews Correlation Coefficient MXScarna(seed):
0.581
RNASLOpt:
0.541
Sensitivity MXScarna(seed):
0.520
RNASLOpt:
0.536
Positive Predictive Value MXScarna(seed):
0.657
RNASLOpt:
0.557
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 3.36290909588e-08
|
20
CentroidFold vs RNASLOpt
Matthews Correlation Coefficient CentroidFold:
0.620
RNASLOpt:
0.558
Sensitivity CentroidFold:
0.597
RNASLOpt:
0.555
Positive Predictive Value CentroidFold:
0.654
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PPfold(20) vs RNASLOpt
Matthews Correlation Coefficient PPfold(20):
0.624
RNASLOpt:
0.480
Sensitivity PPfold(20):
0.573
RNASLOpt:
0.500
Positive Predictive Value PPfold(20):
0.686
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.55268413083e-08
|
10
TurboFold(20) vs RNASLOpt
Matthews Correlation Coefficient TurboFold(20):
0.596
RNASLOpt:
0.480
Sensitivity TurboFold(20):
0.597
RNASLOpt:
0.500
Positive Predictive Value TurboFold(20):
0.603
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.07229227445e-09
|
10
RNASampler(20) vs RNASLOpt
Matthews Correlation Coefficient RNASampler(20):
0.573
RNASLOpt:
0.480
Sensitivity RNASampler(20):
0.539
RNASLOpt:
0.500
Positive Predictive Value RNASampler(20):
0.617
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
10
MXScarna(20) vs RNASLOpt
Matthews Correlation Coefficient MXScarna(20):
0.550
RNASLOpt:
0.480
Sensitivity MXScarna(20):
0.519
RNASLOpt:
0.500
Positive Predictive Value MXScarna(20):
0.591
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
20
ContextFold vs RNASLOpt
Matthews Correlation Coefficient ContextFold:
0.619
RNASLOpt:
0.558
Sensitivity ContextFold:
0.594
RNASLOpt:
0.555
Positive Predictive Value ContextFold:
0.655
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
IPknot vs RNASLOpt
Matthews Correlation Coefficient IPknot:
0.615
RNASLOpt:
0.558
Sensitivity IPknot:
0.594
RNASLOpt:
0.555
Positive Predictive Value IPknot:
0.646
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
20
Contrafold vs RNASLOpt
Matthews Correlation Coefficient Contrafold:
0.599
RNASLOpt:
0.558
Sensitivity Contrafold:
0.609
RNASLOpt:
0.555
Positive Predictive Value Contrafold:
0.600
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
10
Carnac(20) vs RNASLOpt
Matthews Correlation Coefficient Carnac(20):
0.516
RNASLOpt:
0.480
Sensitivity Carnac(20):
0.345
RNASLOpt:
0.500
Positive Predictive Value Carnac(20):
0.780
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.54877389386e-08
|
10
Murlet(20) vs RNASLOpt
Matthews Correlation Coefficient Murlet(20):
0.513
RNASLOpt:
0.480
Sensitivity Murlet(20):
0.461
RNASLOpt:
0.500
Positive Predictive Value Murlet(20):
0.579
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 3.56259806697e-08
|
10
PETfold_pre2.0(20) vs RNASLOpt
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNASLOpt:
0.480
Sensitivity PETfold_pre2.0(20):
0.597
RNASLOpt:
0.500
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNASLOpt:
0.470
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
20
RNASLOpt vs Sfold
Matthews Correlation Coefficient RNASLOpt:
0.558
Sfold:
0.542
Sensitivity RNASLOpt:
0.555
Sfold:
0.523
Positive Predictive Value RNASLOpt:
0.572
Sfold:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 2.17043408065e-05
|
20
Pknots vs RNASLOpt
Matthews Correlation Coefficient Pknots:
0.568
RNASLOpt:
0.558
Sensitivity Pknots:
0.609
RNASLOpt:
0.555
Positive Predictive Value Pknots:
0.541
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.00371712387624
|
20
RNASLOpt vs MaxExpect
Matthews Correlation Coefficient RNASLOpt:
0.558
MaxExpect:
0.506
Sensitivity RNASLOpt:
0.555
MaxExpect:
0.509
Positive Predictive Value RNASLOpt:
0.572
MaxExpect:
0.516
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
11
TurboFold(seed) vs RNASLOpt
Matthews Correlation Coefficient TurboFold(seed):
0.570
RNASLOpt:
0.471
Sensitivity TurboFold(seed):
0.564
RNASLOpt:
0.469
Positive Predictive Value TurboFold(seed):
0.585
RNASLOpt:
0.483
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.68298245606e-09
|
20
PknotsRG vs RNASLOpt
Matthews Correlation Coefficient PknotsRG:
0.564
RNASLOpt:
0.558
Sensitivity PknotsRG:
0.606
RNASLOpt:
0.555
Positive Predictive Value PknotsRG:
0.534
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.00856511679236
|
12
Cylofold vs RNASLOpt
Matthews Correlation Coefficient Cylofold:
0.603
RNASLOpt:
0.540
Sensitivity Cylofold:
0.583
RNASLOpt:
0.506
Positive Predictive Value Cylofold:
0.640
RNASLOpt:
0.595
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
17
RNASLOpt vs CentroidHomfold‑LAST
Matthews Correlation Coefficient RNASLOpt:
0.550
CentroidHomfold‑LAST:
0.546
Sensitivity RNASLOpt:
0.544
CentroidHomfold‑LAST:
0.544
Positive Predictive Value RNASLOpt:
0.569
CentroidHomfold‑LAST:
0.560
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0356345619152
|
|
-
McQFold vs RNASLOpt
Matthews Correlation Coefficient McQFold:
0.625
RNASLOpt:
0.558
Sensitivity McQFold:
0.638
RNASLOpt:
0.555
Positive Predictive Value McQFold:
0.621
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASLOpt vs ProbKnot
Matthews Correlation Coefficient RNASLOpt:
0.558
ProbKnot:
0.512
Sensitivity RNASLOpt:
0.555
ProbKnot:
0.540
Positive Predictive Value RNASLOpt:
0.572
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
+
RNASLOpt vs UNAFold
Matthews Correlation Coefficient RNASLOpt:
0.558
UNAFold:
0.471
Sensitivity RNASLOpt:
0.555
UNAFold:
0.499
Positive Predictive Value RNASLOpt:
0.572
UNAFold:
0.458
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNASLOpt vs HotKnots
Matthews Correlation Coefficient RNASLOpt:
0.558
HotKnots:
0.512
Sensitivity RNASLOpt:
0.555
HotKnots:
0.560
Positive Predictive Value RNASLOpt:
0.572
HotKnots:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.54865340847e-08
|
+
RNASLOpt vs RNAshapes
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAshapes:
0.508
Sensitivity RNASLOpt:
0.555
RNAshapes:
0.533
Positive Predictive Value RNASLOpt:
0.572
RNAshapes:
0.495
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNASLOpt vs RNAfold
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAfold:
0.493
Sensitivity RNASLOpt:
0.555
RNAfold:
0.521
Positive Predictive Value RNASLOpt:
0.572
RNAfold:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
RNASLOpt vs Afold
Matthews Correlation Coefficient RNASLOpt:
0.547
Afold:
0.436
Sensitivity RNASLOpt:
0.560
Afold:
0.472
Positive Predictive Value RNASLOpt:
0.546
Afold:
0.417
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNASLOpt vs RSpredict(20)
Matthews Correlation Coefficient RNASLOpt:
0.480
RSpredict(20):
0.419
Sensitivity RNASLOpt:
0.500
RSpredict(20):
0.388
Positive Predictive Value RNASLOpt:
0.470
RSpredict(20):
0.462
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.70002765408e-09
|
?
Multilign(seed) vs RNASLOpt
Matthews Correlation Coefficient Multilign(seed):
0.628
RNASLOpt:
0.536
Sensitivity Multilign(seed):
0.575
RNASLOpt:
0.507
Positive Predictive Value Multilign(seed):
0.696
RNASLOpt:
0.577
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNASLOpt vs RNAsubopt
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAsubopt:
0.509
Sensitivity RNASLOpt:
0.555
RNAsubopt:
0.545
Positive Predictive Value RNASLOpt:
0.572
RNAsubopt:
0.487
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
RNASLOpt vs Fold
Matthews Correlation Coefficient RNASLOpt:
0.558
Fold:
0.444
Sensitivity RNASLOpt:
0.555
Fold:
0.474
Positive Predictive Value RNASLOpt:
0.572
Fold:
0.428
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNASLOpt vs Vsfold4
Matthews Correlation Coefficient RNASLOpt:
0.575
Vsfold4:
0.501
Sensitivity RNASLOpt:
0.573
Vsfold4:
0.495
Positive Predictive Value RNASLOpt:
0.588
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.30280588002e-08
|
?
RNASLOpt vs RNASampler(seed)
Matthews Correlation Coefficient RNASLOpt:
0.489
RNASampler(seed):
0.390
Sensitivity RNASLOpt:
0.513
RNASampler(seed):
0.323
Positive Predictive Value RNASLOpt:
0.474
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
RNASLOpt vs Multilign(20)
Matthews Correlation Coefficient RNASLOpt:
0.506
Multilign(20):
0.441
Sensitivity RNASLOpt:
0.525
Multilign(20):
0.458
Positive Predictive Value RNASLOpt:
0.497
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNASLOpt vs Mastr(20)
Matthews Correlation Coefficient RNASLOpt:
0.480
Mastr(20):
0.467
Sensitivity RNASLOpt:
0.500
Mastr(20):
0.272
Positive Predictive Value RNASLOpt:
0.470
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.53906836456e-05
|
+
RNASLOpt vs Murlet(seed)
Matthews Correlation Coefficient RNASLOpt:
0.527
Murlet(seed):
0.473
Sensitivity RNASLOpt:
0.520
Murlet(seed):
0.300
Positive Predictive Value RNASLOpt:
0.544
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
+
RNASLOpt vs Vsfold5
Matthews Correlation Coefficient RNASLOpt:
0.546
Vsfold5:
0.506
Sensitivity RNASLOpt:
0.542
Vsfold5:
0.530
Positive Predictive Value RNASLOpt:
0.563
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
?
RNASLOpt vs Alterna
Matthews Correlation Coefficient RNASLOpt:
0.379
Alterna:
0.362
Sensitivity RNASLOpt:
0.310
Alterna:
0.345
Positive Predictive Value RNASLOpt:
0.500
Alterna:
0.417
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
+
RNASLOpt vs RDfolder
Matthews Correlation Coefficient RNASLOpt:
0.686
RDfolder:
0.491
Sensitivity RNASLOpt:
0.638
RDfolder:
0.443
Positive Predictive Value RNASLOpt:
0.752
RDfolder:
0.566
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
+
RNASLOpt vs MCFold
Matthews Correlation Coefficient RNASLOpt:
0.509
MCFold:
0.370
Sensitivity RNASLOpt:
0.516
MCFold:
0.421
Positive Predictive Value RNASLOpt:
0.513
MCFold:
0.338
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
+
RNASLOpt vs RNAwolf
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAwolf:
0.416
Sensitivity RNASLOpt:
0.555
RNAwolf:
0.430
Positive Predictive Value RNASLOpt:
0.572
RNAwolf:
0.417
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNASLOpt vs RSpredict(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
RSpredict(seed):
0.209
Sensitivity RNASLOpt:
0.559
RSpredict(seed):
0.115
Positive Predictive Value RNASLOpt:
0.576
RSpredict(seed):
0.398
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
+
RNASLOpt vs Carnac(seed)
Matthews Correlation Coefficient RNASLOpt:
0.527
Carnac(seed):
0.276
Sensitivity RNASLOpt:
0.520
Carnac(seed):
0.077
Positive Predictive Value RNASLOpt:
0.544
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
+
RNASLOpt vs NanoFolder
Matthews Correlation Coefficient RNASLOpt:
0.558
NanoFolder:
0.406
Sensitivity RNASLOpt:
0.564
NanoFolder:
0.516
Positive Predictive Value RNASLOpt:
0.562
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
+
RNASLOpt vs PPfold(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
PPfold(seed):
0.218
Sensitivity RNASLOpt:
0.559
PPfold(seed):
0.076
Positive Predictive Value RNASLOpt:
0.576
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 3.21671975982e-08
|
?
CMfinder(seed) vs RNASLOpt
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNASLOpt:
N/A
Sensitivity CMfinder(seed):
N/A
RNASLOpt:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASLOpt vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASLOpt:
0.933
PETfold_2.0(seed):
0.831
Sensitivity RNASLOpt:
0.903
PETfold_2.0(seed):
0.806
Positive Predictive Value RNASLOpt:
0.966
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNASLOpt vs DAFS(20)
Matthews Correlation Coefficient RNASLOpt:
N/A
DAFS(20):
N/A
Sensitivity RNASLOpt:
N/A
DAFS(20):
N/A
Positive Predictive Value RNASLOpt:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs RNASLOpt
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Sensitivity PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNASLOpt
Matthews Correlation Coefficient CMfinder(20):
0.580
RNASLOpt:
0.542
Sensitivity CMfinder(20):
0.500
RNASLOpt:
0.582
Positive Predictive Value CMfinder(20):
0.681
RNASLOpt:
0.514
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RNASLOpt
Matthews Correlation Coefficient CRWrnafold:
0.473
RNASLOpt:
0.449
Sensitivity CRWrnafold:
0.485
RNASLOpt:
0.438
Positive Predictive Value CRWrnafold:
0.477
RNASLOpt:
0.475
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs RNASLOpt
Matthews Correlation Coefficient DAFS(seed):
N/A
RNASLOpt:
N/A
Sensitivity DAFS(seed):
N/A
RNASLOpt:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNASLOpt vs Mastr(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
Mastr(seed):
0.056
Sensitivity RNASLOpt:
0.559
Mastr(seed):
0.009
Positive Predictive Value RNASLOpt:
0.576
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
McQFold |
30
CentroidAlifold(seed) vs McQFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
McQFold:
0.597
Sensitivity CentroidAlifold(seed):
0.672
McQFold:
0.614
Positive Predictive Value CentroidAlifold(seed):
0.908
McQFold:
0.582
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs McQFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
McQFold:
0.613
Sensitivity CentroidAlifold(20):
0.664
McQFold:
0.628
Positive Predictive Value CentroidAlifold(20):
0.900
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
16
PETfold_pre2.0(seed) vs McQFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
McQFold:
0.583
Sensitivity PETfold_pre2.0(seed):
0.802
McQFold:
0.594
Positive Predictive Value PETfold_pre2.0(seed):
0.863
McQFold:
0.572
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
25
RNAalifold(seed) vs McQFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
McQFold:
0.586
Sensitivity RNAalifold(seed):
0.607
McQFold:
0.603
Positive Predictive Value RNAalifold(seed):
0.872
McQFold:
0.571
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
RNAalifold(20) vs McQFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
McQFold:
0.613
Sensitivity RNAalifold(20):
0.654
McQFold:
0.628
Positive Predictive Value RNAalifold(20):
0.826
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
29
MXScarna(seed) vs McQFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
McQFold:
0.592
Sensitivity MXScarna(seed):
0.698
McQFold:
0.609
Positive Predictive Value MXScarna(seed):
0.784
McQFold:
0.578
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
42
CentroidFold vs McQFold
Matthews Correlation Coefficient CentroidFold:
0.611
McQFold:
0.429
Sensitivity CentroidFold:
0.600
McQFold:
0.403
Positive Predictive Value CentroidFold:
0.622
McQFold:
0.457
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
12
PPfold(20) vs McQFold
Matthews Correlation Coefficient PPfold(20):
0.668
McQFold:
0.599
Sensitivity PPfold(20):
0.614
McQFold:
0.641
Positive Predictive Value PPfold(20):
0.733
McQFold:
0.568
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
12
TurboFold(20) vs McQFold
Matthews Correlation Coefficient TurboFold(20):
0.636
McQFold:
0.599
Sensitivity TurboFold(20):
0.629
McQFold:
0.641
Positive Predictive Value TurboFold(20):
0.649
McQFold:
0.568
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
21
RNASampler(20) vs McQFold
Matthews Correlation Coefficient RNASampler(20):
0.692
McQFold:
0.613
Sensitivity RNASampler(20):
0.621
McQFold:
0.628
Positive Predictive Value RNASampler(20):
0.776
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MXScarna(20) vs McQFold
Matthews Correlation Coefficient MXScarna(20):
0.678
McQFold:
0.613
Sensitivity MXScarna(20):
0.640
McQFold:
0.628
Positive Predictive Value MXScarna(20):
0.724
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
22
ContextFold vs McQFold
Matthews Correlation Coefficient ContextFold:
0.596
McQFold:
0.446
Sensitivity ContextFold:
0.588
McQFold:
0.462
Positive Predictive Value ContextFold:
0.604
McQFold:
0.432
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
24
IPknot vs McQFold
Matthews Correlation Coefficient IPknot:
0.600
McQFold:
0.463
Sensitivity IPknot:
0.560
McQFold:
0.478
Positive Predictive Value IPknot:
0.644
McQFold:
0.449
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
46
Contrafold vs McQFold
Matthews Correlation Coefficient Contrafold:
0.610
McQFold:
0.417
Sensitivity Contrafold:
0.632
McQFold:
0.398
Positive Predictive Value Contrafold:
0.589
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs McQFold
Matthews Correlation Coefficient Carnac(20):
0.641
McQFold:
0.613
Sensitivity Carnac(20):
0.456
McQFold:
0.628
Positive Predictive Value Carnac(20):
0.908
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.39132889808e-08
|
21
Murlet(20) vs McQFold
Matthews Correlation Coefficient Murlet(20):
0.625
McQFold:
0.613
Sensitivity Murlet(20):
0.530
McQFold:
0.628
Positive Predictive Value Murlet(20):
0.744
McQFold:
0.605
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 2.50703181085e-05
|
10
PETfold_pre2.0(20) vs McQFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
McQFold:
0.541
Sensitivity PETfold_pre2.0(20):
0.597
McQFold:
0.592
Positive Predictive Value PETfold_pre2.0(20):
0.654
McQFold:
0.502
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
46
Sfold vs McQFold
Matthews Correlation Coefficient Sfold:
0.521
McQFold:
0.417
Sensitivity Sfold:
0.524
McQFold:
0.398
Positive Predictive Value Sfold:
0.519
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
McQFold vs Pknots
Matthews Correlation Coefficient McQFold:
0.680
Pknots:
0.648
Sensitivity McQFold:
0.680
Pknots:
0.676
Positive Predictive Value McQFold:
0.689
Pknots:
0.630
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
MaxExpect vs McQFold
Matthews Correlation Coefficient MaxExpect:
0.589
McQFold:
0.458
Sensitivity MaxExpect:
0.604
McQFold:
0.469
Positive Predictive Value MaxExpect:
0.576
McQFold:
0.447
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
13
McQFold vs TurboFold(seed)
Matthews Correlation Coefficient McQFold:
0.615
TurboFold(seed):
0.610
Sensitivity McQFold:
0.642
TurboFold(seed):
0.598
Positive Predictive Value McQFold:
0.597
TurboFold(seed):
0.630
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00721642488944
|
45
PknotsRG vs McQFold
Matthews Correlation Coefficient PknotsRG:
0.481
McQFold:
0.400
Sensitivity PknotsRG:
0.523
McQFold:
0.379
Positive Predictive Value PknotsRG:
0.442
McQFold:
0.422
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
19
McQFold vs Cylofold
Matthews Correlation Coefficient McQFold:
0.720
Cylofold:
0.669
Sensitivity McQFold:
0.706
Cylofold:
0.648
Positive Predictive Value McQFold:
0.743
Cylofold:
0.700
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
19
McQFold vs CentroidHomfold‑LAST
Matthews Correlation Coefficient McQFold:
0.670
CentroidHomfold‑LAST:
0.577
Sensitivity McQFold:
0.686
CentroidHomfold‑LAST:
0.565
Positive Predictive Value McQFold:
0.664
CentroidHomfold‑LAST:
0.601
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
20
McQFold vs RNASLOpt
Matthews Correlation Coefficient McQFold:
0.625
RNASLOpt:
0.558
Sensitivity McQFold:
0.638
RNASLOpt:
0.555
Positive Predictive Value McQFold:
0.621
RNASLOpt:
0.572
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
|
-
ProbKnot vs McQFold
Matthews Correlation Coefficient ProbKnot:
0.524
McQFold:
0.472
Sensitivity ProbKnot:
0.554
McQFold:
0.493
Positive Predictive Value ProbKnot:
0.497
McQFold:
0.453
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 8.14593558869e-08
|
-
UNAFold vs McQFold
Matthews Correlation Coefficient UNAFold:
0.496
McQFold:
0.417
Sensitivity UNAFold:
0.530
McQFold:
0.398
Positive Predictive Value UNAFold:
0.464
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs HotKnots
Matthews Correlation Coefficient McQFold:
0.625
HotKnots:
0.588
Sensitivity McQFold:
0.641
HotKnots:
0.627
Positive Predictive Value McQFold:
0.616
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.85233844192e-08
|
+
McQFold vs RNAshapes
Matthews Correlation Coefficient McQFold:
0.625
RNAshapes:
0.585
Sensitivity McQFold:
0.641
RNAshapes:
0.606
Positive Predictive Value McQFold:
0.616
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
RNAfold vs McQFold
Matthews Correlation Coefficient RNAfold:
0.492
McQFold:
0.417
Sensitivity RNAfold:
0.531
McQFold:
0.398
Positive Predictive Value RNAfold:
0.456
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
Afold vs McQFold
Matthews Correlation Coefficient Afold:
0.473
McQFold:
0.358
Sensitivity Afold:
0.516
McQFold:
0.337
Positive Predictive Value Afold:
0.434
McQFold:
0.382
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs RSpredict(20)
Matthews Correlation Coefficient McQFold:
0.613
RSpredict(20):
0.585
Sensitivity McQFold:
0.628
RSpredict(20):
0.534
Positive Predictive Value McQFold:
0.605
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.05835476236e-07
|
-
Multilign(seed) vs McQFold
Matthews Correlation Coefficient Multilign(seed):
0.658
McQFold:
0.633
Sensitivity Multilign(seed):
0.608
McQFold:
0.623
Positive Predictive Value Multilign(seed):
0.721
McQFold:
0.653
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.57935810139e-05
|
+
McQFold vs RNAsubopt
Matthews Correlation Coefficient McQFold:
0.625
RNAsubopt:
0.581
Sensitivity McQFold:
0.641
RNAsubopt:
0.612
Positive Predictive Value McQFold:
0.616
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
Fold vs McQFold
Matthews Correlation Coefficient Fold:
0.490
McQFold:
0.482
Sensitivity Fold:
0.523
McQFold:
0.503
Positive Predictive Value Fold:
0.460
McQFold:
0.464
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 7.04732813174e-08
|
+
McQFold vs Vsfold4
Matthews Correlation Coefficient McQFold:
0.623
Vsfold4:
0.553
Sensitivity McQFold:
0.644
Vsfold4:
0.549
Positive Predictive Value McQFold:
0.609
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
RNASampler(seed) vs McQFold
Matthews Correlation Coefficient RNASampler(seed):
0.563
McQFold:
0.562
Sensitivity RNASampler(seed):
0.472
McQFold:
0.601
Positive Predictive Value RNASampler(seed):
0.678
McQFold:
0.534
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.249670901929
|
+
McQFold vs Multilign(20)
Matthews Correlation Coefficient McQFold:
0.632
Multilign(20):
0.517
Sensitivity McQFold:
0.678
Multilign(20):
0.530
Positive Predictive Value McQFold:
0.598
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
+
McQFold vs Mastr(20)
Matthews Correlation Coefficient McQFold:
0.613
Mastr(20):
0.508
Sensitivity McQFold:
0.628
Mastr(20):
0.329
Positive Predictive Value McQFold:
0.605
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
McQFold vs Murlet(seed)
Matthews Correlation Coefficient McQFold:
0.677
Murlet(seed):
0.534
Sensitivity McQFold:
0.683
Murlet(seed):
0.349
Positive Predictive Value McQFold:
0.680
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
McQFold vs Vsfold5
Matthews Correlation Coefficient McQFold:
0.627
Vsfold5:
0.523
Sensitivity McQFold:
0.646
Vsfold5:
0.527
Positive Predictive Value McQFold:
0.616
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs Alterna
Matthews Correlation Coefficient McQFold:
0.717
Alterna:
0.647
Sensitivity McQFold:
0.689
Alterna:
0.636
Positive Predictive Value McQFold:
0.758
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
+
McQFold vs RDfolder
Matthews Correlation Coefficient McQFold:
0.714
RDfolder:
0.569
Sensitivity McQFold:
0.692
RDfolder:
0.510
Positive Predictive Value McQFold:
0.749
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs MCFold
Matthews Correlation Coefficient McQFold:
0.662
MCFold:
0.465
Sensitivity McQFold:
0.669
MCFold:
0.510
Positive Predictive Value McQFold:
0.663
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs RNAwolf
Matthews Correlation Coefficient McQFold:
0.463
RNAwolf:
0.406
Sensitivity McQFold:
0.478
RNAwolf:
0.415
Positive Predictive Value McQFold:
0.449
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
McQFold vs RSpredict(seed)
Matthews Correlation Coefficient McQFold:
0.597
RSpredict(seed):
0.498
Sensitivity McQFold:
0.614
RSpredict(seed):
0.359
Positive Predictive Value McQFold:
0.582
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
McQFold vs Carnac(seed)
Matthews Correlation Coefficient McQFold:
0.627
Carnac(seed):
0.492
Sensitivity McQFold:
0.632
Carnac(seed):
0.259
Positive Predictive Value McQFold:
0.625
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
McQFold vs NanoFolder
Matthews Correlation Coefficient McQFold:
0.575
NanoFolder:
0.406
Sensitivity McQFold:
0.612
NanoFolder:
0.516
Positive Predictive Value McQFold:
0.550
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
+
McQFold vs PPfold(seed)
Matthews Correlation Coefficient McQFold:
0.643
PPfold(seed):
0.202
Sensitivity McQFold:
0.662
PPfold(seed):
0.066
Positive Predictive Value McQFold:
0.634
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
?
McQFold vs CMfinder(seed)
Matthews Correlation Coefficient McQFold:
N/A
CMfinder(seed):
N/A
Sensitivity McQFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value McQFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
McQFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient McQFold:
0.860
PETfold_2.0(seed):
0.831
Sensitivity McQFold:
0.774
PETfold_2.0(seed):
0.806
Positive Predictive Value McQFold:
0.960
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
McQFold vs DAFS(20)
Matthews Correlation Coefficient McQFold:
N/A
DAFS(20):
N/A
Sensitivity McQFold:
N/A
DAFS(20):
N/A
Positive Predictive Value McQFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
McQFold vs PETfold_2.0(20)
Matthews Correlation Coefficient McQFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity McQFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value McQFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs McQFold
Matthews Correlation Coefficient CMfinder(20):
0.580
McQFold:
0.570
Sensitivity CMfinder(20):
0.500
McQFold:
0.643
Positive Predictive Value CMfinder(20):
0.681
McQFold:
0.512
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
McQFold vs CRWrnafold
Matthews Correlation Coefficient McQFold:
0.657
CRWrnafold:
0.502
Sensitivity McQFold:
0.667
CRWrnafold:
0.516
Positive Predictive Value McQFold:
0.658
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
McQFold vs DAFS(seed)
Matthews Correlation Coefficient McQFold:
N/A
DAFS(seed):
N/A
Sensitivity McQFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value McQFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
McQFold vs Mastr(seed)
Matthews Correlation Coefficient McQFold:
0.615
Mastr(seed):
0.036
Sensitivity McQFold:
0.641
Mastr(seed):
0.004
Positive Predictive Value McQFold:
0.597
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
ProbKnot |
23
CentroidAlifold(seed) vs ProbKnot
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
ProbKnot:
0.580
Sensitivity CentroidAlifold(seed):
0.679
ProbKnot:
0.608
Positive Predictive Value CentroidAlifold(seed):
0.899
ProbKnot:
0.554
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
16
CentroidAlifold(20) vs ProbKnot
Matthews Correlation Coefficient CentroidAlifold(20):
0.730
ProbKnot:
0.562
Sensitivity CentroidAlifold(20):
0.611
ProbKnot:
0.600
Positive Predictive Value CentroidAlifold(20):
0.876
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
16
PETfold_pre2.0(seed) vs ProbKnot
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
ProbKnot:
0.577
Sensitivity PETfold_pre2.0(seed):
0.802
ProbKnot:
0.593
Positive Predictive Value PETfold_pre2.0(seed):
0.863
ProbKnot:
0.562
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
21
RNAalifold(seed) vs ProbKnot
Matthews Correlation Coefficient RNAalifold(seed):
0.721
ProbKnot:
0.583
Sensitivity RNAalifold(seed):
0.600
ProbKnot:
0.611
Positive Predictive Value RNAalifold(seed):
0.868
ProbKnot:
0.558
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
16
RNAalifold(20) vs ProbKnot
Matthews Correlation Coefficient RNAalifold(20):
0.683
ProbKnot:
0.562
Sensitivity RNAalifold(20):
0.603
ProbKnot:
0.600
Positive Predictive Value RNAalifold(20):
0.779
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
22
MXScarna(seed) vs ProbKnot
Matthews Correlation Coefficient MXScarna(seed):
0.720
ProbKnot:
0.582
Sensitivity MXScarna(seed):
0.682
ProbKnot:
0.610
Positive Predictive Value MXScarna(seed):
0.760
ProbKnot:
0.557
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
31
CentroidFold vs ProbKnot
Matthews Correlation Coefficient CentroidFold:
0.574
ProbKnot:
0.524
Sensitivity CentroidFold:
0.557
ProbKnot:
0.554
Positive Predictive Value CentroidFold:
0.593
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs ProbKnot
Matthews Correlation Coefficient PPfold(20):
0.668
ProbKnot:
0.483
Sensitivity PPfold(20):
0.614
ProbKnot:
0.525
Positive Predictive Value PPfold(20):
0.733
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.50323628132e-08
|
12
TurboFold(20) vs ProbKnot
Matthews Correlation Coefficient TurboFold(20):
0.636
ProbKnot:
0.483
Sensitivity TurboFold(20):
0.629
ProbKnot:
0.525
Positive Predictive Value TurboFold(20):
0.649
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.93248927742e-08
|
16
RNASampler(20) vs ProbKnot
Matthews Correlation Coefficient RNASampler(20):
0.631
ProbKnot:
0.562
Sensitivity RNASampler(20):
0.562
ProbKnot:
0.600
Positive Predictive Value RNASampler(20):
0.714
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
16
MXScarna(20) vs ProbKnot
Matthews Correlation Coefficient MXScarna(20):
0.639
ProbKnot:
0.562
Sensitivity MXScarna(20):
0.603
ProbKnot:
0.600
Positive Predictive Value MXScarna(20):
0.682
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
22
ContextFold vs ProbKnot
Matthews Correlation Coefficient ContextFold:
0.596
ProbKnot:
0.498
Sensitivity ContextFold:
0.588
ProbKnot:
0.520
Positive Predictive Value ContextFold:
0.604
ProbKnot:
0.477
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
24
IPknot vs ProbKnot
Matthews Correlation Coefficient IPknot:
0.600
ProbKnot:
0.508
Sensitivity IPknot:
0.560
ProbKnot:
0.530
Positive Predictive Value IPknot:
0.644
ProbKnot:
0.488
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
31
Contrafold vs ProbKnot
Matthews Correlation Coefficient Contrafold:
0.554
ProbKnot:
0.524
Sensitivity Contrafold:
0.572
ProbKnot:
0.554
Positive Predictive Value Contrafold:
0.538
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
16
Carnac(20) vs ProbKnot
Matthews Correlation Coefficient Carnac(20):
0.583
ProbKnot:
0.562
Sensitivity Carnac(20):
0.391
ProbKnot:
0.600
Positive Predictive Value Carnac(20):
0.874
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.54671126599e-08
|
16
Murlet(20) vs ProbKnot
Matthews Correlation Coefficient Murlet(20):
0.579
ProbKnot:
0.562
Sensitivity Murlet(20):
0.490
ProbKnot:
0.600
Positive Predictive Value Murlet(20):
0.690
ProbKnot:
0.532
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59391197053e-08
|
10
PETfold_pre2.0(20) vs ProbKnot
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
ProbKnot:
0.421
Sensitivity PETfold_pre2.0(20):
0.597
ProbKnot:
0.466
Positive Predictive Value PETfold_pre2.0(20):
0.654
ProbKnot:
0.390
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.26710183075e-09
|
31
Sfold vs ProbKnot
Matthews Correlation Coefficient Sfold:
0.531
ProbKnot:
0.524
Sensitivity Sfold:
0.537
ProbKnot:
0.554
Positive Predictive Value Sfold:
0.525
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 6.53888633552e-08
|
27
Pknots vs ProbKnot
Matthews Correlation Coefficient Pknots:
0.608
ProbKnot:
0.587
Sensitivity Pknots:
0.646
ProbKnot:
0.618
Positive Predictive Value Pknots:
0.582
ProbKnot:
0.567
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 7.27211512036e-08
|
31
MaxExpect vs ProbKnot
Matthews Correlation Coefficient MaxExpect:
0.528
ProbKnot:
0.524
Sensitivity MaxExpect:
0.548
ProbKnot:
0.554
Positive Predictive Value MaxExpect:
0.511
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs ProbKnot
Matthews Correlation Coefficient TurboFold(seed):
0.610
ProbKnot:
0.544
Sensitivity TurboFold(seed):
0.598
ProbKnot:
0.574
Positive Predictive Value TurboFold(seed):
0.630
ProbKnot:
0.525
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
30
PknotsRG vs ProbKnot
Matthews Correlation Coefficient PknotsRG:
0.519
ProbKnot:
0.495
Sensitivity PknotsRG:
0.566
ProbKnot:
0.531
Positive Predictive Value PknotsRG:
0.479
ProbKnot:
0.463
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
18
Cylofold vs ProbKnot
Matthews Correlation Coefficient Cylofold:
0.654
ProbKnot:
0.618
Sensitivity Cylofold:
0.634
ProbKnot:
0.637
Positive Predictive Value Cylofold:
0.685
ProbKnot:
0.611
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
19
CentroidHomfold‑LAST vs ProbKnot
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
ProbKnot:
0.512
Sensitivity CentroidHomfold‑LAST:
0.565
ProbKnot:
0.539
Positive Predictive Value CentroidHomfold‑LAST:
0.601
ProbKnot:
0.500
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
20
RNASLOpt vs ProbKnot
Matthews Correlation Coefficient RNASLOpt:
0.558
ProbKnot:
0.512
Sensitivity RNASLOpt:
0.555
ProbKnot:
0.540
Positive Predictive Value RNASLOpt:
0.572
ProbKnot:
0.497
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
31
ProbKnot vs McQFold
Matthews Correlation Coefficient ProbKnot:
0.524
McQFold:
0.472
Sensitivity ProbKnot:
0.554
McQFold:
0.493
Positive Predictive Value ProbKnot:
0.497
McQFold:
0.453
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 8.14593558869e-08
|
|
+
ProbKnot vs UNAFold
Matthews Correlation Coefficient ProbKnot:
0.524
UNAFold:
0.508
Sensitivity ProbKnot:
0.554
UNAFold:
0.539
Positive Predictive Value ProbKnot:
0.497
UNAFold:
0.481
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 4.1569883686e-08
|
+
ProbKnot vs HotKnots
Matthews Correlation Coefficient ProbKnot:
0.557
HotKnots:
0.548
Sensitivity ProbKnot:
0.598
HotKnots:
0.601
Positive Predictive Value ProbKnot:
0.526
HotKnots:
0.507
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 2.52036670554e-05
|
+
ProbKnot vs RNAshapes
Matthews Correlation Coefficient ProbKnot:
0.557
RNAshapes:
0.551
Sensitivity ProbKnot:
0.598
RNAshapes:
0.582
Positive Predictive Value ProbKnot:
0.526
RNAshapes:
0.527
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 8.17032057145e-07
|
+
ProbKnot vs RNAfold
Matthews Correlation Coefficient ProbKnot:
0.524
RNAfold:
0.509
Sensitivity ProbKnot:
0.554
RNAfold:
0.544
Positive Predictive Value ProbKnot:
0.497
RNAfold:
0.478
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
ProbKnot vs Afold
Matthews Correlation Coefficient ProbKnot:
0.424
Afold:
0.419
Sensitivity ProbKnot:
0.463
Afold:
0.465
Positive Predictive Value ProbKnot:
0.390
Afold:
0.380
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.42322841337e-08
|
+
ProbKnot vs RSpredict(20)
Matthews Correlation Coefficient ProbKnot:
0.562
RSpredict(20):
0.529
Sensitivity ProbKnot:
0.600
RSpredict(20):
0.488
Positive Predictive Value ProbKnot:
0.532
RSpredict(20):
0.581
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.95402773876e-08
|
-
Multilign(seed) vs ProbKnot
Matthews Correlation Coefficient Multilign(seed):
0.658
ProbKnot:
0.641
Sensitivity Multilign(seed):
0.608
ProbKnot:
0.650
Positive Predictive Value Multilign(seed):
0.721
ProbKnot:
0.643
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.43282458231e-08
|
=
ProbKnot vs RNAsubopt
Matthews Correlation Coefficient ProbKnot:
0.557
RNAsubopt:
0.555
Sensitivity ProbKnot:
0.598
RNAsubopt:
0.597
Positive Predictive Value ProbKnot:
0.526
RNAsubopt:
0.522
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 0.0824697876226
|
+
ProbKnot vs Fold
Matthews Correlation Coefficient ProbKnot:
0.524
Fold:
0.482
Sensitivity ProbKnot:
0.554
Fold:
0.516
Positive Predictive Value ProbKnot:
0.497
Fold:
0.453
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
ProbKnot vs Vsfold4
Matthews Correlation Coefficient ProbKnot:
0.546
Vsfold4:
0.486
Sensitivity ProbKnot:
0.590
Vsfold4:
0.493
Positive Predictive Value ProbKnot:
0.511
Vsfold4:
0.487
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
ProbKnot vs RNASampler(seed)
Matthews Correlation Coefficient ProbKnot:
0.516
RNASampler(seed):
0.501
Sensitivity ProbKnot:
0.575
RNASampler(seed):
0.421
Positive Predictive Value ProbKnot:
0.470
RNASampler(seed):
0.605
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.000845354672286
|
-
Multilign(20) vs ProbKnot
Matthews Correlation Coefficient Multilign(20):
0.517
ProbKnot:
0.483
Sensitivity Multilign(20):
0.530
ProbKnot:
0.526
Positive Predictive Value Multilign(20):
0.515
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.06842734121e-08
|
+
ProbKnot vs Mastr(20)
Matthews Correlation Coefficient ProbKnot:
0.562
Mastr(20):
0.409
Sensitivity ProbKnot:
0.600
Mastr(20):
0.227
Positive Predictive Value ProbKnot:
0.532
Mastr(20):
0.745
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
+
ProbKnot vs Murlet(seed)
Matthews Correlation Coefficient ProbKnot:
0.609
Murlet(seed):
0.503
Sensitivity ProbKnot:
0.639
Murlet(seed):
0.316
Positive Predictive Value ProbKnot:
0.589
Murlet(seed):
0.811
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
+
ProbKnot vs Vsfold5
Matthews Correlation Coefficient ProbKnot:
0.544
Vsfold5:
0.491
Sensitivity ProbKnot:
0.585
Vsfold5:
0.509
Positive Predictive Value ProbKnot:
0.512
Vsfold5:
0.481
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
?
ProbKnot vs Alterna
Matthews Correlation Coefficient ProbKnot:
0.594
Alterna:
0.536
Sensitivity ProbKnot:
0.604
Alterna:
0.525
Positive Predictive Value ProbKnot:
0.604
Alterna:
0.570
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
ProbKnot vs RDfolder
Matthews Correlation Coefficient ProbKnot:
0.609
RDfolder:
0.513
Sensitivity ProbKnot:
0.619
RDfolder:
0.455
Positive Predictive Value ProbKnot:
0.616
RDfolder:
0.600
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
+
ProbKnot vs MCFold
Matthews Correlation Coefficient ProbKnot:
0.511
MCFold:
0.446
Sensitivity ProbKnot:
0.550
MCFold:
0.498
Positive Predictive Value ProbKnot:
0.486
MCFold:
0.411
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
ProbKnot vs RNAwolf
Matthews Correlation Coefficient ProbKnot:
0.508
RNAwolf:
0.406
Sensitivity ProbKnot:
0.530
RNAwolf:
0.415
Positive Predictive Value ProbKnot:
0.488
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
ProbKnot vs RSpredict(seed)
Matthews Correlation Coefficient ProbKnot:
0.580
RSpredict(seed):
0.497
Sensitivity ProbKnot:
0.608
RSpredict(seed):
0.365
Positive Predictive Value ProbKnot:
0.554
RSpredict(seed):
0.678
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
ProbKnot vs Carnac(seed)
Matthews Correlation Coefficient ProbKnot:
0.610
Carnac(seed):
0.521
Sensitivity ProbKnot:
0.627
Carnac(seed):
0.291
Positive Predictive Value ProbKnot:
0.594
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.84041289224e-08
|
+
ProbKnot vs NanoFolder
Matthews Correlation Coefficient ProbKnot:
0.455
NanoFolder:
0.406
Sensitivity ProbKnot:
0.496
NanoFolder:
0.516
Positive Predictive Value ProbKnot:
0.431
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.58270421775e-05
|
+
ProbKnot vs PPfold(seed)
Matthews Correlation Coefficient ProbKnot:
0.565
PPfold(seed):
0.202
Sensitivity ProbKnot:
0.593
PPfold(seed):
0.066
Positive Predictive Value ProbKnot:
0.548
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
ProbKnot vs CMfinder(seed)
Matthews Correlation Coefficient ProbKnot:
N/A
CMfinder(seed):
N/A
Sensitivity ProbKnot:
N/A
CMfinder(seed):
N/A
Positive Predictive Value ProbKnot:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
ProbKnot vs PETfold_2.0(seed)
Matthews Correlation Coefficient ProbKnot:
0.967
PETfold_2.0(seed):
0.831
Sensitivity ProbKnot:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value ProbKnot:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
ProbKnot vs DAFS(20)
Matthews Correlation Coefficient ProbKnot:
N/A
DAFS(20):
N/A
Sensitivity ProbKnot:
N/A
DAFS(20):
N/A
Positive Predictive Value ProbKnot:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
ProbKnot vs PETfold_2.0(20)
Matthews Correlation Coefficient ProbKnot:
N/A
PETfold_2.0(20):
N/A
Sensitivity ProbKnot:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value ProbKnot:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs ProbKnot
Matthews Correlation Coefficient CMfinder(20):
0.580
ProbKnot:
0.363
Sensitivity CMfinder(20):
0.500
ProbKnot:
0.408
Positive Predictive Value CMfinder(20):
0.681
ProbKnot:
0.333
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs ProbKnot
Matthews Correlation Coefficient CRWrnafold:
0.502
ProbKnot:
0.480
Sensitivity CRWrnafold:
0.516
ProbKnot:
0.509
Positive Predictive Value CRWrnafold:
0.503
ProbKnot:
0.468
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
ProbKnot vs DAFS(seed)
Matthews Correlation Coefficient ProbKnot:
N/A
DAFS(seed):
N/A
Sensitivity ProbKnot:
N/A
DAFS(seed):
N/A
Positive Predictive Value ProbKnot:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
ProbKnot vs Mastr(seed)
Matthews Correlation Coefficient ProbKnot:
0.562
Mastr(seed):
0.041
Sensitivity ProbKnot:
0.605
Mastr(seed):
0.005
Positive Predictive Value ProbKnot:
0.528
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
UNAFold |
30
CentroidAlifold(seed) vs UNAFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
UNAFold:
0.577
Sensitivity CentroidAlifold(seed):
0.672
UNAFold:
0.600
Positive Predictive Value CentroidAlifold(seed):
0.908
UNAFold:
0.556
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs UNAFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
UNAFold:
0.581
Sensitivity CentroidAlifold(20):
0.664
UNAFold:
0.602
Positive Predictive Value CentroidAlifold(20):
0.900
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
16
PETfold_pre2.0(seed) vs UNAFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
UNAFold:
0.525
Sensitivity PETfold_pre2.0(seed):
0.802
UNAFold:
0.544
Positive Predictive Value PETfold_pre2.0(seed):
0.863
UNAFold:
0.507
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.40919803867e-08
|
25
RNAalifold(seed) vs UNAFold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
UNAFold:
0.583
Sensitivity RNAalifold(seed):
0.607
UNAFold:
0.606
Positive Predictive Value RNAalifold(seed):
0.872
UNAFold:
0.562
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
RNAalifold(20) vs UNAFold
Matthews Correlation Coefficient RNAalifold(20):
0.733
UNAFold:
0.581
Sensitivity RNAalifold(20):
0.654
UNAFold:
0.602
Positive Predictive Value RNAalifold(20):
0.826
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
29
MXScarna(seed) vs UNAFold
Matthews Correlation Coefficient MXScarna(seed):
0.739
UNAFold:
0.580
Sensitivity MXScarna(seed):
0.698
UNAFold:
0.604
Positive Predictive Value MXScarna(seed):
0.784
UNAFold:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
42
CentroidFold vs UNAFold
Matthews Correlation Coefficient CentroidFold:
0.611
UNAFold:
0.498
Sensitivity CentroidFold:
0.600
UNAFold:
0.538
Positive Predictive Value CentroidFold:
0.622
UNAFold:
0.462
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs UNAFold
Matthews Correlation Coefficient PPfold(20):
0.668
UNAFold:
0.461
Sensitivity PPfold(20):
0.614
UNAFold:
0.498
Positive Predictive Value PPfold(20):
0.733
UNAFold:
0.437
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
12
TurboFold(20) vs UNAFold
Matthews Correlation Coefficient TurboFold(20):
0.636
UNAFold:
0.461
Sensitivity TurboFold(20):
0.629
UNAFold:
0.498
Positive Predictive Value TurboFold(20):
0.649
UNAFold:
0.437
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
21
RNASampler(20) vs UNAFold
Matthews Correlation Coefficient RNASampler(20):
0.692
UNAFold:
0.581
Sensitivity RNASampler(20):
0.621
UNAFold:
0.602
Positive Predictive Value RNASampler(20):
0.776
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MXScarna(20) vs UNAFold
Matthews Correlation Coefficient MXScarna(20):
0.678
UNAFold:
0.581
Sensitivity MXScarna(20):
0.640
UNAFold:
0.602
Positive Predictive Value MXScarna(20):
0.724
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
22
ContextFold vs UNAFold
Matthews Correlation Coefficient ContextFold:
0.596
UNAFold:
0.472
Sensitivity ContextFold:
0.588
UNAFold:
0.499
Positive Predictive Value ContextFold:
0.604
UNAFold:
0.448
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
24
IPknot vs UNAFold
Matthews Correlation Coefficient IPknot:
0.600
UNAFold:
0.486
Sensitivity IPknot:
0.560
UNAFold:
0.511
Positive Predictive Value IPknot:
0.644
UNAFold:
0.463
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
46
Contrafold vs UNAFold
Matthews Correlation Coefficient Contrafold:
0.610
UNAFold:
0.496
Sensitivity Contrafold:
0.632
UNAFold:
0.530
Positive Predictive Value Contrafold:
0.589
UNAFold:
0.464
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs UNAFold
Matthews Correlation Coefficient Carnac(20):
0.641
UNAFold:
0.581
Sensitivity Carnac(20):
0.456
UNAFold:
0.602
Positive Predictive Value Carnac(20):
0.908
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
21
Murlet(20) vs UNAFold
Matthews Correlation Coefficient Murlet(20):
0.625
UNAFold:
0.581
Sensitivity Murlet(20):
0.530
UNAFold:
0.602
Positive Predictive Value Murlet(20):
0.744
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PETfold_pre2.0(20) vs UNAFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
UNAFold:
0.380
Sensitivity PETfold_pre2.0(20):
0.597
UNAFold:
0.422
Positive Predictive Value PETfold_pre2.0(20):
0.654
UNAFold:
0.352
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
46
Sfold vs UNAFold
Matthews Correlation Coefficient Sfold:
0.521
UNAFold:
0.496
Sensitivity Sfold:
0.524
UNAFold:
0.530
Positive Predictive Value Sfold:
0.519
UNAFold:
0.464
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs UNAFold
Matthews Correlation Coefficient Pknots:
0.648
UNAFold:
0.627
Sensitivity Pknots:
0.676
UNAFold:
0.639
Positive Predictive Value Pknots:
0.630
UNAFold:
0.626
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 2.63254822069e-07
|
39
MaxExpect vs UNAFold
Matthews Correlation Coefficient MaxExpect:
0.589
UNAFold:
0.522
Sensitivity MaxExpect:
0.604
UNAFold:
0.546
Positive Predictive Value MaxExpect:
0.576
UNAFold:
0.499
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs UNAFold
Matthews Correlation Coefficient TurboFold(seed):
0.610
UNAFold:
0.529
Sensitivity TurboFold(seed):
0.598
UNAFold:
0.551
Positive Predictive Value TurboFold(seed):
0.630
UNAFold:
0.519
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
45
UNAFold vs PknotsRG
Matthews Correlation Coefficient UNAFold:
0.488
PknotsRG:
0.481
Sensitivity UNAFold:
0.524
PknotsRG:
0.523
Positive Predictive Value UNAFold:
0.455
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 4.83792096436e-08
|
19
Cylofold vs UNAFold
Matthews Correlation Coefficient Cylofold:
0.669
UNAFold:
0.634
Sensitivity Cylofold:
0.648
UNAFold:
0.637
Positive Predictive Value Cylofold:
0.700
UNAFold:
0.643
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
19
CentroidHomfold‑LAST vs UNAFold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
UNAFold:
0.494
Sensitivity CentroidHomfold‑LAST:
0.565
UNAFold:
0.514
Positive Predictive Value CentroidHomfold‑LAST:
0.601
UNAFold:
0.488
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
20
RNASLOpt vs UNAFold
Matthews Correlation Coefficient RNASLOpt:
0.558
UNAFold:
0.471
Sensitivity RNASLOpt:
0.555
UNAFold:
0.499
Positive Predictive Value RNASLOpt:
0.572
UNAFold:
0.458
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
46
UNAFold vs McQFold
Matthews Correlation Coefficient UNAFold:
0.496
McQFold:
0.417
Sensitivity UNAFold:
0.530
McQFold:
0.398
Positive Predictive Value UNAFold:
0.464
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
31
ProbKnot vs UNAFold
Matthews Correlation Coefficient ProbKnot:
0.524
UNAFold:
0.508
Sensitivity ProbKnot:
0.554
UNAFold:
0.539
Positive Predictive Value ProbKnot:
0.497
UNAFold:
0.481
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 4.1569883686e-08
|
|
+
UNAFold vs HotKnots
Matthews Correlation Coefficient UNAFold:
0.595
HotKnots:
0.588
Sensitivity UNAFold:
0.620
HotKnots:
0.627
Positive Predictive Value UNAFold:
0.578
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 6.14125540109e-07
|
+
UNAFold vs RNAshapes
Matthews Correlation Coefficient UNAFold:
0.595
RNAshapes:
0.585
Sensitivity UNAFold:
0.620
RNAshapes:
0.606
Positive Predictive Value UNAFold:
0.578
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
+
UNAFold vs RNAfold
Matthews Correlation Coefficient UNAFold:
0.496
RNAfold:
0.492
Sensitivity UNAFold:
0.530
RNAfold:
0.531
Positive Predictive Value UNAFold:
0.464
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 7.5939721025e-08
|
-
Afold vs UNAFold
Matthews Correlation Coefficient Afold:
0.473
UNAFold:
0.470
Sensitivity Afold:
0.516
UNAFold:
0.508
Positive Predictive Value Afold:
0.434
UNAFold:
0.435
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 0.000127743011131
|
=
RSpredict(20) vs UNAFold
Matthews Correlation Coefficient RSpredict(20):
0.585
UNAFold:
0.581
Sensitivity RSpredict(20):
0.534
UNAFold:
0.602
Positive Predictive Value RSpredict(20):
0.649
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.00213378455536
|
-
Multilign(seed) vs UNAFold
Matthews Correlation Coefficient Multilign(seed):
0.658
UNAFold:
0.588
Sensitivity Multilign(seed):
0.608
UNAFold:
0.592
Positive Predictive Value Multilign(seed):
0.721
UNAFold:
0.595
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
+
UNAFold vs RNAsubopt
Matthews Correlation Coefficient UNAFold:
0.595
RNAsubopt:
0.581
Sensitivity UNAFold:
0.620
RNAsubopt:
0.612
Positive Predictive Value UNAFold:
0.578
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 7.04732813174e-08
|
+
UNAFold vs Fold
Matthews Correlation Coefficient UNAFold:
0.515
Fold:
0.490
Sensitivity UNAFold:
0.546
Fold:
0.523
Positive Predictive Value UNAFold:
0.488
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
UNAFold vs Vsfold4
Matthews Correlation Coefficient UNAFold:
0.596
Vsfold4:
0.553
Sensitivity UNAFold:
0.621
Vsfold4:
0.549
Positive Predictive Value UNAFold:
0.580
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
RNASampler(seed) vs UNAFold
Matthews Correlation Coefficient RNASampler(seed):
0.563
UNAFold:
0.542
Sensitivity RNASampler(seed):
0.472
UNAFold:
0.577
Positive Predictive Value RNASampler(seed):
0.678
UNAFold:
0.517
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
-
Multilign(20) vs UNAFold
Matthews Correlation Coefficient Multilign(20):
0.517
UNAFold:
0.483
Sensitivity Multilign(20):
0.530
UNAFold:
0.517
Positive Predictive Value Multilign(20):
0.515
UNAFold:
0.463
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.47172999197e-08
|
+
UNAFold vs Mastr(20)
Matthews Correlation Coefficient UNAFold:
0.581
Mastr(20):
0.508
Sensitivity UNAFold:
0.602
Mastr(20):
0.329
Positive Predictive Value UNAFold:
0.568
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.00387151331e-07
|
+
UNAFold vs Murlet(seed)
Matthews Correlation Coefficient UNAFold:
0.640
Murlet(seed):
0.534
Sensitivity UNAFold:
0.648
Murlet(seed):
0.349
Positive Predictive Value UNAFold:
0.640
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
UNAFold vs Vsfold5
Matthews Correlation Coefficient UNAFold:
0.593
Vsfold5:
0.523
Sensitivity UNAFold:
0.617
Vsfold5:
0.527
Positive Predictive Value UNAFold:
0.578
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
UNAFold vs Alterna
Matthews Correlation Coefficient UNAFold:
0.720
Alterna:
0.647
Sensitivity UNAFold:
0.706
Alterna:
0.636
Positive Predictive Value UNAFold:
0.746
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
+
UNAFold vs RDfolder
Matthews Correlation Coefficient UNAFold:
0.656
RDfolder:
0.569
Sensitivity UNAFold:
0.649
RDfolder:
0.510
Positive Predictive Value UNAFold:
0.678
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
UNAFold vs MCFold
Matthews Correlation Coefficient UNAFold:
0.583
MCFold:
0.465
Sensitivity UNAFold:
0.601
MCFold:
0.510
Positive Predictive Value UNAFold:
0.577
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
UNAFold vs RNAwolf
Matthews Correlation Coefficient UNAFold:
0.486
RNAwolf:
0.406
Sensitivity UNAFold:
0.511
RNAwolf:
0.415
Positive Predictive Value UNAFold:
0.463
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
UNAFold vs RSpredict(seed)
Matthews Correlation Coefficient UNAFold:
0.577
RSpredict(seed):
0.498
Sensitivity UNAFold:
0.600
RSpredict(seed):
0.359
Positive Predictive Value UNAFold:
0.556
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
UNAFold vs Carnac(seed)
Matthews Correlation Coefficient UNAFold:
0.610
Carnac(seed):
0.492
Sensitivity UNAFold:
0.620
Carnac(seed):
0.259
Positive Predictive Value UNAFold:
0.601
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
=
UNAFold vs NanoFolder
Matthews Correlation Coefficient UNAFold:
0.418
NanoFolder:
0.406
Sensitivity UNAFold:
0.448
NanoFolder:
0.516
Positive Predictive Value UNAFold:
0.404
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.0148632542929
|
+
UNAFold vs PPfold(seed)
Matthews Correlation Coefficient UNAFold:
0.515
PPfold(seed):
0.202
Sensitivity UNAFold:
0.537
PPfold(seed):
0.066
Positive Predictive Value UNAFold:
0.506
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
?
UNAFold vs CMfinder(seed)
Matthews Correlation Coefficient UNAFold:
N/A
CMfinder(seed):
N/A
Sensitivity UNAFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value UNAFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
UNAFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient UNAFold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity UNAFold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value UNAFold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
UNAFold vs DAFS(20)
Matthews Correlation Coefficient UNAFold:
N/A
DAFS(20):
N/A
Sensitivity UNAFold:
N/A
DAFS(20):
N/A
Positive Predictive Value UNAFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
UNAFold vs PETfold_2.0(20)
Matthews Correlation Coefficient UNAFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity UNAFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value UNAFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs UNAFold
Matthews Correlation Coefficient CMfinder(20):
0.580
UNAFold:
0.343
Sensitivity CMfinder(20):
0.500
UNAFold:
0.398
Positive Predictive Value CMfinder(20):
0.681
UNAFold:
0.307
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs UNAFold
Matthews Correlation Coefficient CRWrnafold:
0.502
UNAFold:
0.480
Sensitivity CRWrnafold:
0.516
UNAFold:
0.497
Positive Predictive Value CRWrnafold:
0.503
UNAFold:
0.479
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
UNAFold vs DAFS(seed)
Matthews Correlation Coefficient UNAFold:
N/A
DAFS(seed):
N/A
Sensitivity UNAFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value UNAFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
UNAFold vs Mastr(seed)
Matthews Correlation Coefficient UNAFold:
0.580
Mastr(seed):
0.036
Sensitivity UNAFold:
0.609
Mastr(seed):
0.004
Positive Predictive Value UNAFold:
0.560
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
HotKnots |
29
CentroidAlifold(seed) vs HotKnots
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
HotKnots:
0.575
Sensitivity CentroidAlifold(seed):
0.584
HotKnots:
0.620
Positive Predictive Value CentroidAlifold(seed):
0.900
HotKnots:
0.541
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs HotKnots
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
HotKnots:
0.548
Sensitivity CentroidAlifold(20):
0.664
HotKnots:
0.585
Positive Predictive Value CentroidAlifold(20):
0.900
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
15
PETfold_pre2.0(seed) vs HotKnots
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
HotKnots:
0.517
Sensitivity PETfold_pre2.0(seed):
0.726
HotKnots:
0.565
Positive Predictive Value PETfold_pre2.0(seed):
0.861
HotKnots:
0.485
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
24
RNAalifold(seed) vs HotKnots
Matthews Correlation Coefficient RNAalifold(seed):
0.644
HotKnots:
0.591
Sensitivity RNAalifold(seed):
0.478
HotKnots:
0.639
Positive Predictive Value RNAalifold(seed):
0.874
HotKnots:
0.553
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAalifold(20) vs HotKnots
Matthews Correlation Coefficient RNAalifold(20):
0.733
HotKnots:
0.548
Sensitivity RNAalifold(20):
0.654
HotKnots:
0.585
Positive Predictive Value RNAalifold(20):
0.826
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
28
MXScarna(seed) vs HotKnots
Matthews Correlation Coefficient MXScarna(seed):
0.687
HotKnots:
0.581
Sensitivity MXScarna(seed):
0.636
HotKnots:
0.626
Positive Predictive Value MXScarna(seed):
0.748
HotKnots:
0.546
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
38
CentroidFold vs HotKnots
Matthews Correlation Coefficient CentroidFold:
0.687
HotKnots:
0.589
Sensitivity CentroidFold:
0.678
HotKnots:
0.631
Positive Predictive Value CentroidFold:
0.703
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs HotKnots
Matthews Correlation Coefficient PPfold(20):
0.668
HotKnots:
0.463
Sensitivity PPfold(20):
0.614
HotKnots:
0.514
Positive Predictive Value PPfold(20):
0.733
HotKnots:
0.429
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
12
TurboFold(20) vs HotKnots
Matthews Correlation Coefficient TurboFold(20):
0.636
HotKnots:
0.463
Sensitivity TurboFold(20):
0.629
HotKnots:
0.514
Positive Predictive Value TurboFold(20):
0.649
HotKnots:
0.429
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
21
RNASampler(20) vs HotKnots
Matthews Correlation Coefficient RNASampler(20):
0.692
HotKnots:
0.548
Sensitivity RNASampler(20):
0.621
HotKnots:
0.585
Positive Predictive Value RNASampler(20):
0.776
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
MXScarna(20) vs HotKnots
Matthews Correlation Coefficient MXScarna(20):
0.678
HotKnots:
0.548
Sensitivity MXScarna(20):
0.640
HotKnots:
0.585
Positive Predictive Value MXScarna(20):
0.724
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
20
ContextFold vs HotKnots
Matthews Correlation Coefficient ContextFold:
0.619
HotKnots:
0.512
Sensitivity ContextFold:
0.594
HotKnots:
0.560
Positive Predictive Value ContextFold:
0.655
HotKnots:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
22
IPknot vs HotKnots
Matthews Correlation Coefficient IPknot:
0.637
HotKnots:
0.543
Sensitivity IPknot:
0.613
HotKnots:
0.587
Positive Predictive Value IPknot:
0.672
HotKnots:
0.515
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
41
Contrafold vs HotKnots
Matthews Correlation Coefficient Contrafold:
0.649
HotKnots:
0.588
Sensitivity Contrafold:
0.666
HotKnots:
0.627
Positive Predictive Value Contrafold:
0.638
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs HotKnots
Matthews Correlation Coefficient Carnac(20):
0.641
HotKnots:
0.548
Sensitivity Carnac(20):
0.456
HotKnots:
0.585
Positive Predictive Value Carnac(20):
0.908
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
Murlet(20) vs HotKnots
Matthews Correlation Coefficient Murlet(20):
0.625
HotKnots:
0.548
Sensitivity Murlet(20):
0.530
HotKnots:
0.585
Positive Predictive Value Murlet(20):
0.744
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
10
PETfold_pre2.0(20) vs HotKnots
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
HotKnots:
0.386
Sensitivity PETfold_pre2.0(20):
0.597
HotKnots:
0.442
Positive Predictive Value PETfold_pre2.0(20):
0.654
HotKnots:
0.347
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
41
Sfold vs HotKnots
Matthews Correlation Coefficient Sfold:
0.617
HotKnots:
0.588
Sensitivity Sfold:
0.604
HotKnots:
0.627
Positive Predictive Value Sfold:
0.638
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs HotKnots
Matthews Correlation Coefficient Pknots:
0.648
HotKnots:
0.620
Sensitivity Pknots:
0.676
HotKnots:
0.648
Positive Predictive Value Pknots:
0.630
HotKnots:
0.604
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
36
MaxExpect vs HotKnots
Matthews Correlation Coefficient MaxExpect:
0.601
HotKnots:
0.571
Sensitivity MaxExpect:
0.613
HotKnots:
0.614
Positive Predictive Value MaxExpect:
0.596
HotKnots:
0.538
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs HotKnots
Matthews Correlation Coefficient TurboFold(seed):
0.610
HotKnots:
0.580
Sensitivity TurboFold(seed):
0.598
HotKnots:
0.628
Positive Predictive Value TurboFold(seed):
0.630
HotKnots:
0.544
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.62861298049e-06
|
41
PknotsRG vs HotKnots
Matthews Correlation Coefficient PknotsRG:
0.599
HotKnots:
0.588
Sensitivity PknotsRG:
0.636
HotKnots:
0.627
Positive Predictive Value PknotsRG:
0.571
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
19
Cylofold vs HotKnots
Matthews Correlation Coefficient Cylofold:
0.669
HotKnots:
0.662
Sensitivity Cylofold:
0.648
HotKnots:
0.685
Positive Predictive Value Cylofold:
0.700
HotKnots:
0.651
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.62963406642e-06
|
19
CentroidHomfold‑LAST vs HotKnots
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
HotKnots:
0.557
Sensitivity CentroidHomfold‑LAST:
0.565
HotKnots:
0.592
Positive Predictive Value CentroidHomfold‑LAST:
0.601
HotKnots:
0.537
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.06209234089e-07
|
20
RNASLOpt vs HotKnots
Matthews Correlation Coefficient RNASLOpt:
0.558
HotKnots:
0.512
Sensitivity RNASLOpt:
0.555
HotKnots:
0.560
Positive Predictive Value RNASLOpt:
0.572
HotKnots:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.54865340847e-08
|
41
McQFold vs HotKnots
Matthews Correlation Coefficient McQFold:
0.625
HotKnots:
0.588
Sensitivity McQFold:
0.641
HotKnots:
0.627
Positive Predictive Value McQFold:
0.616
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.85233844192e-08
|
29
ProbKnot vs HotKnots
Matthews Correlation Coefficient ProbKnot:
0.557
HotKnots:
0.548
Sensitivity ProbKnot:
0.598
HotKnots:
0.601
Positive Predictive Value ProbKnot:
0.526
HotKnots:
0.507
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 2.52036670554e-05
|
41
UNAFold vs HotKnots
Matthews Correlation Coefficient UNAFold:
0.595
HotKnots:
0.588
Sensitivity UNAFold:
0.620
HotKnots:
0.627
Positive Predictive Value UNAFold:
0.578
HotKnots:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 6.14125540109e-07
|
|
+
HotKnots vs RNAshapes
Matthews Correlation Coefficient HotKnots:
0.588
RNAshapes:
0.585
Sensitivity HotKnots:
0.627
RNAshapes:
0.606
Positive Predictive Value HotKnots:
0.558
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.00049899371755
|
+
HotKnots vs RNAfold
Matthews Correlation Coefficient HotKnots:
0.588
RNAfold:
0.578
Sensitivity HotKnots:
0.627
RNAfold:
0.607
Positive Predictive Value HotKnots:
0.558
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 8.81311508309e-08
|
+
HotKnots vs Afold
Matthews Correlation Coefficient HotKnots:
0.566
Afold:
0.543
Sensitivity HotKnots:
0.611
Afold:
0.581
Positive Predictive Value HotKnots:
0.532
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
-
RSpredict(20) vs HotKnots
Matthews Correlation Coefficient RSpredict(20):
0.585
HotKnots:
0.548
Sensitivity RSpredict(20):
0.534
HotKnots:
0.585
Positive Predictive Value RSpredict(20):
0.649
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.47879201823e-07
|
-
Multilign(seed) vs HotKnots
Matthews Correlation Coefficient Multilign(seed):
0.658
HotKnots:
0.598
Sensitivity Multilign(seed):
0.608
HotKnots:
0.627
Positive Predictive Value Multilign(seed):
0.721
HotKnots:
0.582
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.26393416207e-08
|
+
HotKnots vs RNAsubopt
Matthews Correlation Coefficient HotKnots:
0.588
RNAsubopt:
0.581
Sensitivity HotKnots:
0.627
RNAsubopt:
0.612
Positive Predictive Value HotKnots:
0.558
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 1.22032703654e-06
|
+
HotKnots vs Fold
Matthews Correlation Coefficient HotKnots:
0.560
Fold:
0.532
Sensitivity HotKnots:
0.611
Fold:
0.567
Positive Predictive Value HotKnots:
0.520
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
HotKnots vs Vsfold4
Matthews Correlation Coefficient HotKnots:
0.598
Vsfold4:
0.553
Sensitivity HotKnots:
0.637
Vsfold4:
0.549
Positive Predictive Value HotKnots:
0.569
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
-
RNASampler(seed) vs HotKnots
Matthews Correlation Coefficient RNASampler(seed):
0.563
HotKnots:
0.527
Sensitivity RNASampler(seed):
0.472
HotKnots:
0.587
Positive Predictive Value RNASampler(seed):
0.678
HotKnots:
0.481
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.36923717189e-08
|
+
HotKnots vs Multilign(20)
Matthews Correlation Coefficient HotKnots:
0.534
Multilign(20):
0.517
Sensitivity HotKnots:
0.578
Multilign(20):
0.530
Positive Predictive Value HotKnots:
0.504
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.76930198676e-06
|
+
HotKnots vs Mastr(20)
Matthews Correlation Coefficient HotKnots:
0.548
Mastr(20):
0.508
Sensitivity HotKnots:
0.585
Mastr(20):
0.329
Positive Predictive Value HotKnots:
0.520
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.97437468777e-06
|
+
HotKnots vs Murlet(seed)
Matthews Correlation Coefficient HotKnots:
0.642
Murlet(seed):
0.534
Sensitivity HotKnots:
0.673
Murlet(seed):
0.349
Positive Predictive Value HotKnots:
0.621
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
HotKnots vs Vsfold5
Matthews Correlation Coefficient HotKnots:
0.598
Vsfold5:
0.523
Sensitivity HotKnots:
0.636
Vsfold5:
0.527
Positive Predictive Value HotKnots:
0.570
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
HotKnots vs Alterna
Matthews Correlation Coefficient HotKnots:
0.725
Alterna:
0.647
Sensitivity HotKnots:
0.715
Alterna:
0.636
Positive Predictive Value HotKnots:
0.749
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
+
HotKnots vs RDfolder
Matthews Correlation Coefficient HotKnots:
0.688
RDfolder:
0.569
Sensitivity HotKnots:
0.690
RDfolder:
0.510
Positive Predictive Value HotKnots:
0.698
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
HotKnots vs MCFold
Matthews Correlation Coefficient HotKnots:
0.576
MCFold:
0.465
Sensitivity HotKnots:
0.613
MCFold:
0.510
Positive Predictive Value HotKnots:
0.553
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
HotKnots vs RNAwolf
Matthews Correlation Coefficient HotKnots:
0.543
RNAwolf:
0.449
Sensitivity HotKnots:
0.587
RNAwolf:
0.461
Positive Predictive Value HotKnots:
0.515
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
HotKnots vs RSpredict(seed)
Matthews Correlation Coefficient HotKnots:
0.575
RSpredict(seed):
0.292
Sensitivity HotKnots:
0.620
RSpredict(seed):
0.158
Positive Predictive Value HotKnots:
0.541
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
HotKnots vs Carnac(seed)
Matthews Correlation Coefficient HotKnots:
0.642
Carnac(seed):
0.200
Sensitivity HotKnots:
0.673
Carnac(seed):
0.040
Positive Predictive Value HotKnots:
0.621
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
HotKnots vs NanoFolder
Matthews Correlation Coefficient HotKnots:
0.506
NanoFolder:
0.406
Sensitivity HotKnots:
0.560
NanoFolder:
0.516
Positive Predictive Value HotKnots:
0.468
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
+
HotKnots vs PPfold(seed)
Matthews Correlation Coefficient HotKnots:
0.555
PPfold(seed):
0.202
Sensitivity HotKnots:
0.595
PPfold(seed):
0.066
Positive Predictive Value HotKnots:
0.527
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
?
HotKnots vs CMfinder(seed)
Matthews Correlation Coefficient HotKnots:
N/A
CMfinder(seed):
N/A
Sensitivity HotKnots:
N/A
CMfinder(seed):
N/A
Positive Predictive Value HotKnots:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
HotKnots vs PETfold_2.0(seed)
Matthews Correlation Coefficient HotKnots:
0.967
PETfold_2.0(seed):
0.831
Sensitivity HotKnots:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value HotKnots:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
HotKnots vs DAFS(20)
Matthews Correlation Coefficient HotKnots:
N/A
DAFS(20):
N/A
Sensitivity HotKnots:
N/A
DAFS(20):
N/A
Positive Predictive Value HotKnots:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
HotKnots vs PETfold_2.0(20)
Matthews Correlation Coefficient HotKnots:
N/A
PETfold_2.0(20):
N/A
Sensitivity HotKnots:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value HotKnots:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs HotKnots
Matthews Correlation Coefficient CMfinder(20):
0.580
HotKnots:
0.346
Sensitivity CMfinder(20):
0.500
HotKnots:
0.398
Positive Predictive Value CMfinder(20):
0.681
HotKnots:
0.312
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
HotKnots vs CRWrnafold
Matthews Correlation Coefficient HotKnots:
0.618
CRWrnafold:
0.502
Sensitivity HotKnots:
0.654
CRWrnafold:
0.516
Positive Predictive Value HotKnots:
0.594
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
HotKnots vs DAFS(seed)
Matthews Correlation Coefficient HotKnots:
N/A
DAFS(seed):
N/A
Sensitivity HotKnots:
N/A
DAFS(seed):
N/A
Positive Predictive Value HotKnots:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
HotKnots vs Mastr(seed)
Matthews Correlation Coefficient HotKnots:
0.575
Mastr(seed):
0.036
Sensitivity HotKnots:
0.620
Mastr(seed):
0.004
Positive Predictive Value HotKnots:
0.541
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
RNAshapes |
29
CentroidAlifold(seed) vs RNAshapes
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
RNAshapes:
0.579
Sensitivity CentroidAlifold(seed):
0.584
RNAshapes:
0.606
Positive Predictive Value CentroidAlifold(seed):
0.900
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
CentroidAlifold(20) vs RNAshapes
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAshapes:
0.576
Sensitivity CentroidAlifold(20):
0.664
RNAshapes:
0.596
Positive Predictive Value CentroidAlifold(20):
0.900
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
15
PETfold_pre2.0(seed) vs RNAshapes
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNAshapes:
0.532
Sensitivity PETfold_pre2.0(seed):
0.726
RNAshapes:
0.559
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAshapes:
0.516
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
24
RNAalifold(seed) vs RNAshapes
Matthews Correlation Coefficient RNAalifold(seed):
0.644
RNAshapes:
0.593
Sensitivity RNAalifold(seed):
0.478
RNAshapes:
0.620
Positive Predictive Value RNAalifold(seed):
0.874
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAalifold(20) vs RNAshapes
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAshapes:
0.576
Sensitivity RNAalifold(20):
0.654
RNAshapes:
0.596
Positive Predictive Value RNAalifold(20):
0.826
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
28
MXScarna(seed) vs RNAshapes
Matthews Correlation Coefficient MXScarna(seed):
0.687
RNAshapes:
0.578
Sensitivity MXScarna(seed):
0.636
RNAshapes:
0.605
Positive Predictive Value MXScarna(seed):
0.748
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
38
CentroidFold vs RNAshapes
Matthews Correlation Coefficient CentroidFold:
0.687
RNAshapes:
0.587
Sensitivity CentroidFold:
0.678
RNAshapes:
0.609
Positive Predictive Value CentroidFold:
0.703
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs RNAshapes
Matthews Correlation Coefficient PPfold(20):
0.668
RNAshapes:
0.491
Sensitivity PPfold(20):
0.614
RNAshapes:
0.529
Positive Predictive Value PPfold(20):
0.733
RNAshapes:
0.466
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
12
TurboFold(20) vs RNAshapes
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAshapes:
0.491
Sensitivity TurboFold(20):
0.629
RNAshapes:
0.529
Positive Predictive Value TurboFold(20):
0.649
RNAshapes:
0.466
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
21
RNASampler(20) vs RNAshapes
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAshapes:
0.576
Sensitivity RNASampler(20):
0.621
RNAshapes:
0.596
Positive Predictive Value RNASampler(20):
0.776
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MXScarna(20) vs RNAshapes
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAshapes:
0.576
Sensitivity MXScarna(20):
0.640
RNAshapes:
0.596
Positive Predictive Value MXScarna(20):
0.724
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
ContextFold vs RNAshapes
Matthews Correlation Coefficient ContextFold:
0.619
RNAshapes:
0.508
Sensitivity ContextFold:
0.594
RNAshapes:
0.533
Positive Predictive Value ContextFold:
0.655
RNAshapes:
0.495
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
IPknot vs RNAshapes
Matthews Correlation Coefficient IPknot:
0.637
RNAshapes:
0.542
Sensitivity IPknot:
0.613
RNAshapes:
0.563
Positive Predictive Value IPknot:
0.672
RNAshapes:
0.533
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
41
Contrafold vs RNAshapes
Matthews Correlation Coefficient Contrafold:
0.649
RNAshapes:
0.585
Sensitivity Contrafold:
0.666
RNAshapes:
0.606
Positive Predictive Value Contrafold:
0.638
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs RNAshapes
Matthews Correlation Coefficient Carnac(20):
0.641
RNAshapes:
0.576
Sensitivity Carnac(20):
0.456
RNAshapes:
0.596
Positive Predictive Value Carnac(20):
0.908
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
21
Murlet(20) vs RNAshapes
Matthews Correlation Coefficient Murlet(20):
0.625
RNAshapes:
0.576
Sensitivity Murlet(20):
0.530
RNAshapes:
0.596
Positive Predictive Value Murlet(20):
0.744
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PETfold_pre2.0(20) vs RNAshapes
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAshapes:
0.416
Sensitivity PETfold_pre2.0(20):
0.597
RNAshapes:
0.461
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAshapes:
0.386
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.4651262096e-08
|
41
Sfold vs RNAshapes
Matthews Correlation Coefficient Sfold:
0.617
RNAshapes:
0.585
Sensitivity Sfold:
0.604
RNAshapes:
0.606
Positive Predictive Value Sfold:
0.638
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs RNAshapes
Matthews Correlation Coefficient Pknots:
0.648
RNAshapes:
0.621
Sensitivity Pknots:
0.676
RNAshapes:
0.628
Positive Predictive Value Pknots:
0.630
RNAshapes:
0.625
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
36
MaxExpect vs RNAshapes
Matthews Correlation Coefficient MaxExpect:
0.601
RNAshapes:
0.576
Sensitivity MaxExpect:
0.613
RNAshapes:
0.599
Positive Predictive Value MaxExpect:
0.596
RNAshapes:
0.560
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs RNAshapes
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAshapes:
0.582
Sensitivity TurboFold(seed):
0.598
RNAshapes:
0.605
Positive Predictive Value TurboFold(seed):
0.630
RNAshapes:
0.568
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.12160100812e-08
|
41
PknotsRG vs RNAshapes
Matthews Correlation Coefficient PknotsRG:
0.599
RNAshapes:
0.585
Sensitivity PknotsRG:
0.636
RNAshapes:
0.606
Positive Predictive Value PknotsRG:
0.571
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 6.06606238843e-08
|
19
Cylofold vs RNAshapes
Matthews Correlation Coefficient Cylofold:
0.669
RNAshapes:
0.627
Sensitivity Cylofold:
0.648
RNAshapes:
0.625
Positive Predictive Value Cylofold:
0.700
RNAshapes:
0.640
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
19
CentroidHomfold‑LAST vs RNAshapes
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAshapes:
0.533
Sensitivity CentroidHomfold‑LAST:
0.565
RNAshapes:
0.549
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAshapes:
0.529
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
20
RNASLOpt vs RNAshapes
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAshapes:
0.508
Sensitivity RNASLOpt:
0.555
RNAshapes:
0.533
Positive Predictive Value RNASLOpt:
0.572
RNAshapes:
0.495
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
41
McQFold vs RNAshapes
Matthews Correlation Coefficient McQFold:
0.625
RNAshapes:
0.585
Sensitivity McQFold:
0.641
RNAshapes:
0.606
Positive Predictive Value McQFold:
0.616
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
29
ProbKnot vs RNAshapes
Matthews Correlation Coefficient ProbKnot:
0.557
RNAshapes:
0.551
Sensitivity ProbKnot:
0.598
RNAshapes:
0.582
Positive Predictive Value ProbKnot:
0.526
RNAshapes:
0.527
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 8.17032057145e-07
|
41
UNAFold vs RNAshapes
Matthews Correlation Coefficient UNAFold:
0.595
RNAshapes:
0.585
Sensitivity UNAFold:
0.620
RNAshapes:
0.606
Positive Predictive Value UNAFold:
0.578
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
41
HotKnots vs RNAshapes
Matthews Correlation Coefficient HotKnots:
0.588
RNAshapes:
0.585
Sensitivity HotKnots:
0.627
RNAshapes:
0.606
Positive Predictive Value HotKnots:
0.558
RNAshapes:
0.573
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.00049899371755
|
|
+
RNAshapes vs RNAfold
Matthews Correlation Coefficient RNAshapes:
0.585
RNAfold:
0.578
Sensitivity RNAshapes:
0.606
RNAfold:
0.607
Positive Predictive Value RNAshapes:
0.573
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 1.27481660653e-07
|
+
RNAshapes vs Afold
Matthews Correlation Coefficient RNAshapes:
0.554
Afold:
0.543
Sensitivity RNAshapes:
0.578
Afold:
0.581
Positive Predictive Value RNAshapes:
0.538
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
-
RSpredict(20) vs RNAshapes
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAshapes:
0.576
Sensitivity RSpredict(20):
0.534
RNAshapes:
0.596
Positive Predictive Value RSpredict(20):
0.649
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000863404212649
|
=
Multilign(seed) vs RNAshapes
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAshapes:
0.645
Sensitivity Multilign(seed):
0.608
RNAshapes:
0.650
Positive Predictive Value Multilign(seed):
0.721
RNAshapes:
0.650
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.0027398973824
|
=
RNAshapes vs RNAsubopt
Matthews Correlation Coefficient RNAshapes:
0.585
RNAsubopt:
0.581
Sensitivity RNAshapes:
0.606
RNAsubopt:
0.612
Positive Predictive Value RNAshapes:
0.573
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.0173545140323
|
+
RNAshapes vs Fold
Matthews Correlation Coefficient RNAshapes:
0.557
Fold:
0.532
Sensitivity RNAshapes:
0.587
Fold:
0.567
Positive Predictive Value RNAshapes:
0.535
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAshapes vs Vsfold4
Matthews Correlation Coefficient RNAshapes:
0.584
Vsfold4:
0.553
Sensitivity RNAshapes:
0.603
Vsfold4:
0.549
Positive Predictive Value RNAshapes:
0.572
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAshapes vs RNASampler(seed)
Matthews Correlation Coefficient RNAshapes:
0.570
RNASampler(seed):
0.563
Sensitivity RNAshapes:
0.605
RNASampler(seed):
0.472
Positive Predictive Value RNAshapes:
0.546
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.000564395793884
|
=
RNAshapes vs Multilign(20)
Matthews Correlation Coefficient RNAshapes:
0.519
Multilign(20):
0.517
Sensitivity RNAshapes:
0.552
Multilign(20):
0.530
Positive Predictive Value RNAshapes:
0.498
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.428395601111
|
+
RNAshapes vs Mastr(20)
Matthews Correlation Coefficient RNAshapes:
0.576
Mastr(20):
0.508
Sensitivity RNAshapes:
0.596
Mastr(20):
0.329
Positive Predictive Value RNAshapes:
0.564
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAshapes vs Murlet(seed)
Matthews Correlation Coefficient RNAshapes:
0.651
Murlet(seed):
0.534
Sensitivity RNAshapes:
0.658
Murlet(seed):
0.349
Positive Predictive Value RNAshapes:
0.652
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAshapes vs Vsfold5
Matthews Correlation Coefficient RNAshapes:
0.584
Vsfold5:
0.523
Sensitivity RNAshapes:
0.602
Vsfold5:
0.527
Positive Predictive Value RNAshapes:
0.574
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAshapes vs Alterna
Matthews Correlation Coefficient RNAshapes:
0.705
Alterna:
0.647
Sensitivity RNAshapes:
0.678
Alterna:
0.636
Positive Predictive Value RNAshapes:
0.745
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
+
RNAshapes vs RDfolder
Matthews Correlation Coefficient RNAshapes:
0.657
RDfolder:
0.569
Sensitivity RNAshapes:
0.639
RDfolder:
0.510
Positive Predictive Value RNAshapes:
0.689
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAshapes vs MCFold
Matthews Correlation Coefficient RNAshapes:
0.584
MCFold:
0.465
Sensitivity RNAshapes:
0.599
MCFold:
0.510
Positive Predictive Value RNAshapes:
0.581
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAshapes vs RNAwolf
Matthews Correlation Coefficient RNAshapes:
0.542
RNAwolf:
0.449
Sensitivity RNAshapes:
0.563
RNAwolf:
0.461
Positive Predictive Value RNAshapes:
0.533
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
RNAshapes vs RSpredict(seed)
Matthews Correlation Coefficient RNAshapes:
0.579
RSpredict(seed):
0.292
Sensitivity RNAshapes:
0.606
RSpredict(seed):
0.158
Positive Predictive Value RNAshapes:
0.560
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
RNAshapes vs Carnac(seed)
Matthews Correlation Coefficient RNAshapes:
0.651
Carnac(seed):
0.200
Sensitivity RNAshapes:
0.658
Carnac(seed):
0.040
Positive Predictive Value RNAshapes:
0.652
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAshapes vs NanoFolder
Matthews Correlation Coefficient RNAshapes:
0.482
NanoFolder:
0.406
Sensitivity RNAshapes:
0.512
NanoFolder:
0.516
Positive Predictive Value RNAshapes:
0.465
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
+
RNAshapes vs PPfold(seed)
Matthews Correlation Coefficient RNAshapes:
0.568
PPfold(seed):
0.202
Sensitivity RNAshapes:
0.590
PPfold(seed):
0.066
Positive Predictive Value RNAshapes:
0.558
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.93248927742e-08
|
?
CMfinder(seed) vs RNAshapes
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAshapes:
N/A
Sensitivity CMfinder(seed):
N/A
RNAshapes:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAshapes:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAshapes vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAshapes:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAshapes:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAshapes:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNAshapes vs DAFS(20)
Matthews Correlation Coefficient RNAshapes:
N/A
DAFS(20):
N/A
Sensitivity RNAshapes:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAshapes:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAshapes vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAshapes:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAshapes:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAshapes:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNAshapes
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAshapes:
0.417
Sensitivity CMfinder(20):
0.500
RNAshapes:
0.480
Positive Predictive Value CMfinder(20):
0.681
RNAshapes:
0.373
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNAshapes vs CRWrnafold
Matthews Correlation Coefficient RNAshapes:
0.526
CRWrnafold:
0.502
Sensitivity RNAshapes:
0.535
CRWrnafold:
0.516
Positive Predictive Value RNAshapes:
0.531
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs RNAshapes
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAshapes:
N/A
Sensitivity DAFS(seed):
N/A
RNAshapes:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAshapes:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAshapes vs Mastr(seed)
Matthews Correlation Coefficient RNAshapes:
0.579
Mastr(seed):
0.036
Sensitivity RNAshapes:
0.606
Mastr(seed):
0.004
Positive Predictive Value RNAshapes:
0.560
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
RNAfold |
30
CentroidAlifold(seed) vs RNAfold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
RNAfold:
0.581
Sensitivity CentroidAlifold(seed):
0.672
RNAfold:
0.609
Positive Predictive Value CentroidAlifold(seed):
0.908
RNAfold:
0.556
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs RNAfold
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAfold:
0.572
Sensitivity CentroidAlifold(20):
0.664
RNAfold:
0.601
Positive Predictive Value CentroidAlifold(20):
0.900
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
16
PETfold_pre2.0(seed) vs RNAfold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
RNAfold:
0.541
Sensitivity PETfold_pre2.0(seed):
0.802
RNAfold:
0.563
Positive Predictive Value PETfold_pre2.0(seed):
0.863
RNAfold:
0.522
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
25
RNAalifold(seed) vs RNAfold
Matthews Correlation Coefficient RNAalifold(seed):
0.728
RNAfold:
0.592
Sensitivity RNAalifold(seed):
0.607
RNAfold:
0.620
Positive Predictive Value RNAalifold(seed):
0.872
RNAfold:
0.567
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
RNAalifold(20) vs RNAfold
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAfold:
0.572
Sensitivity RNAalifold(20):
0.654
RNAfold:
0.601
Positive Predictive Value RNAalifold(20):
0.826
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
29
MXScarna(seed) vs RNAfold
Matthews Correlation Coefficient MXScarna(seed):
0.739
RNAfold:
0.585
Sensitivity MXScarna(seed):
0.698
RNAfold:
0.613
Positive Predictive Value MXScarna(seed):
0.784
RNAfold:
0.560
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
42
CentroidFold vs RNAfold
Matthews Correlation Coefficient CentroidFold:
0.611
RNAfold:
0.491
Sensitivity CentroidFold:
0.600
RNAfold:
0.535
Positive Predictive Value CentroidFold:
0.622
RNAfold:
0.451
Number of pairs reference - predicted secondary structure: 42
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs RNAfold
Matthews Correlation Coefficient PPfold(20):
0.668
RNAfold:
0.468
Sensitivity PPfold(20):
0.614
RNAfold:
0.506
Positive Predictive Value PPfold(20):
0.733
RNAfold:
0.444
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 5.64212886735e-09
|
12
TurboFold(20) vs RNAfold
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAfold:
0.468
Sensitivity TurboFold(20):
0.629
RNAfold:
0.506
Positive Predictive Value TurboFold(20):
0.649
RNAfold:
0.444
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
21
RNASampler(20) vs RNAfold
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAfold:
0.572
Sensitivity RNASampler(20):
0.621
RNAfold:
0.601
Positive Predictive Value RNASampler(20):
0.776
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
MXScarna(20) vs RNAfold
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAfold:
0.572
Sensitivity MXScarna(20):
0.640
RNAfold:
0.601
Positive Predictive Value MXScarna(20):
0.724
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
ContextFold vs RNAfold
Matthews Correlation Coefficient ContextFold:
0.596
RNAfold:
0.474
Sensitivity ContextFold:
0.588
RNAfold:
0.503
Positive Predictive Value ContextFold:
0.604
RNAfold:
0.448
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.6410608252e-08
|
24
IPknot vs RNAfold
Matthews Correlation Coefficient IPknot:
0.600
RNAfold:
0.488
Sensitivity IPknot:
0.560
RNAfold:
0.516
Positive Predictive Value IPknot:
0.644
RNAfold:
0.463
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
46
Contrafold vs RNAfold
Matthews Correlation Coefficient Contrafold:
0.610
RNAfold:
0.492
Sensitivity Contrafold:
0.632
RNAfold:
0.531
Positive Predictive Value Contrafold:
0.589
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs RNAfold
Matthews Correlation Coefficient Carnac(20):
0.641
RNAfold:
0.572
Sensitivity Carnac(20):
0.456
RNAfold:
0.601
Positive Predictive Value Carnac(20):
0.908
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
Murlet(20) vs RNAfold
Matthews Correlation Coefficient Murlet(20):
0.625
RNAfold:
0.572
Sensitivity Murlet(20):
0.530
RNAfold:
0.601
Positive Predictive Value Murlet(20):
0.744
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PETfold_pre2.0(20) vs RNAfold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAfold:
0.389
Sensitivity PETfold_pre2.0(20):
0.597
RNAfold:
0.432
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAfold:
0.360
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.08519761914e-09
|
46
Sfold vs RNAfold
Matthews Correlation Coefficient Sfold:
0.521
RNAfold:
0.492
Sensitivity Sfold:
0.524
RNAfold:
0.531
Positive Predictive Value Sfold:
0.519
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs RNAfold
Matthews Correlation Coefficient Pknots:
0.648
RNAfold:
0.610
Sensitivity Pknots:
0.676
RNAfold:
0.624
Positive Predictive Value Pknots:
0.630
RNAfold:
0.607
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
MaxExpect vs RNAfold
Matthews Correlation Coefficient MaxExpect:
0.589
RNAfold:
0.512
Sensitivity MaxExpect:
0.604
RNAfold:
0.541
Positive Predictive Value MaxExpect:
0.576
RNAfold:
0.486
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs RNAfold
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAfold:
0.580
Sensitivity TurboFold(seed):
0.598
RNAfold:
0.605
Positive Predictive Value TurboFold(seed):
0.630
RNAfold:
0.565
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
45
RNAfold vs PknotsRG
Matthews Correlation Coefficient RNAfold:
0.484
PknotsRG:
0.481
Sensitivity RNAfold:
0.525
PknotsRG:
0.523
Positive Predictive Value RNAfold:
0.446
PknotsRG:
0.442
Number of pairs reference - predicted secondary structure: 45
Wilcoxon single-rank test P-value: 1.39704516867e-06
|
19
Cylofold vs RNAfold
Matthews Correlation Coefficient Cylofold:
0.669
RNAfold:
0.609
Sensitivity Cylofold:
0.648
RNAfold:
0.614
Positive Predictive Value Cylofold:
0.700
RNAfold:
0.617
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
19
CentroidHomfold‑LAST vs RNAfold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAfold:
0.516
Sensitivity CentroidHomfold‑LAST:
0.565
RNAfold:
0.537
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAfold:
0.510
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
20
RNASLOpt vs RNAfold
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAfold:
0.493
Sensitivity RNASLOpt:
0.555
RNAfold:
0.521
Positive Predictive Value RNASLOpt:
0.572
RNAfold:
0.479
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
46
RNAfold vs McQFold
Matthews Correlation Coefficient RNAfold:
0.492
McQFold:
0.417
Sensitivity RNAfold:
0.531
McQFold:
0.398
Positive Predictive Value RNAfold:
0.456
McQFold:
0.438
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
31
ProbKnot vs RNAfold
Matthews Correlation Coefficient ProbKnot:
0.524
RNAfold:
0.509
Sensitivity ProbKnot:
0.554
RNAfold:
0.544
Positive Predictive Value ProbKnot:
0.497
RNAfold:
0.478
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
46
UNAFold vs RNAfold
Matthews Correlation Coefficient UNAFold:
0.496
RNAfold:
0.492
Sensitivity UNAFold:
0.530
RNAfold:
0.531
Positive Predictive Value UNAFold:
0.464
RNAfold:
0.456
Number of pairs reference - predicted secondary structure: 46
Wilcoxon single-rank test P-value: 7.5939721025e-08
|
41
HotKnots vs RNAfold
Matthews Correlation Coefficient HotKnots:
0.588
RNAfold:
0.578
Sensitivity HotKnots:
0.627
RNAfold:
0.607
Positive Predictive Value HotKnots:
0.558
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 8.81311508309e-08
|
41
RNAshapes vs RNAfold
Matthews Correlation Coefficient RNAshapes:
0.585
RNAfold:
0.578
Sensitivity RNAshapes:
0.606
RNAfold:
0.607
Positive Predictive Value RNAshapes:
0.573
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 1.27481660653e-07
|
|
-
Afold vs RNAfold
Matthews Correlation Coefficient Afold:
0.473
RNAfold:
0.466
Sensitivity Afold:
0.516
RNAfold:
0.510
Positive Predictive Value Afold:
0.434
RNAfold:
0.427
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
=
RSpredict(20) vs RNAfold
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAfold:
0.572
Sensitivity RSpredict(20):
0.534
RNAfold:
0.601
Positive Predictive Value RSpredict(20):
0.649
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.00147506668047
|
=
Multilign(seed) vs RNAfold
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAfold:
0.644
Sensitivity Multilign(seed):
0.608
RNAfold:
0.654
Positive Predictive Value Multilign(seed):
0.721
RNAfold:
0.644
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00428277394435
|
=
RNAsubopt vs RNAfold
Matthews Correlation Coefficient RNAsubopt:
0.581
RNAfold:
0.578
Sensitivity RNAsubopt:
0.612
RNAfold:
0.607
Positive Predictive Value RNAsubopt:
0.560
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.00165937258828
|
+
RNAfold vs Fold
Matthews Correlation Coefficient RNAfold:
0.506
Fold:
0.490
Sensitivity RNAfold:
0.540
Fold:
0.523
Positive Predictive Value RNAfold:
0.476
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAfold vs Vsfold4
Matthews Correlation Coefficient RNAfold:
0.575
Vsfold4:
0.553
Sensitivity RNAfold:
0.604
Vsfold4:
0.549
Positive Predictive Value RNAfold:
0.555
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
+
RNAfold vs RNASampler(seed)
Matthews Correlation Coefficient RNAfold:
0.582
RNASampler(seed):
0.563
Sensitivity RNAfold:
0.622
RNASampler(seed):
0.472
Positive Predictive Value RNAfold:
0.551
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47838274392e-05
|
-
Multilign(20) vs RNAfold
Matthews Correlation Coefficient Multilign(20):
0.517
RNAfold:
0.492
Sensitivity Multilign(20):
0.530
RNAfold:
0.526
Positive Predictive Value Multilign(20):
0.515
RNAfold:
0.471
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 6.52786411104e-07
|
+
RNAfold vs Mastr(20)
Matthews Correlation Coefficient RNAfold:
0.572
Mastr(20):
0.508
Sensitivity RNAfold:
0.601
Mastr(20):
0.329
Positive Predictive Value RNAfold:
0.552
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
+
RNAfold vs Murlet(seed)
Matthews Correlation Coefficient RNAfold:
0.667
Murlet(seed):
0.534
Sensitivity RNAfold:
0.680
Murlet(seed):
0.349
Positive Predictive Value RNAfold:
0.662
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAfold vs Vsfold5
Matthews Correlation Coefficient RNAfold:
0.575
Vsfold5:
0.523
Sensitivity RNAfold:
0.603
Vsfold5:
0.527
Positive Predictive Value RNAfold:
0.557
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAfold vs Alterna
Matthews Correlation Coefficient RNAfold:
0.668
Alterna:
0.647
Sensitivity RNAfold:
0.655
Alterna:
0.636
Positive Predictive Value RNAfold:
0.695
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
+
RNAfold vs RDfolder
Matthews Correlation Coefficient RNAfold:
0.619
RDfolder:
0.569
Sensitivity RNAfold:
0.614
RDfolder:
0.510
Positive Predictive Value RNAfold:
0.641
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
+
RNAfold vs MCFold
Matthews Correlation Coefficient RNAfold:
0.582
MCFold:
0.465
Sensitivity RNAfold:
0.601
MCFold:
0.510
Positive Predictive Value RNAfold:
0.574
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAfold vs RNAwolf
Matthews Correlation Coefficient RNAfold:
0.488
RNAwolf:
0.406
Sensitivity RNAfold:
0.516
RNAwolf:
0.415
Positive Predictive Value RNAfold:
0.463
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
RNAfold vs RSpredict(seed)
Matthews Correlation Coefficient RNAfold:
0.581
RSpredict(seed):
0.498
Sensitivity RNAfold:
0.609
RSpredict(seed):
0.359
Positive Predictive Value RNAfold:
0.556
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAfold vs Carnac(seed)
Matthews Correlation Coefficient RNAfold:
0.623
Carnac(seed):
0.492
Sensitivity RNAfold:
0.637
Carnac(seed):
0.259
Positive Predictive Value RNAfold:
0.611
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAfold vs NanoFolder
Matthews Correlation Coefficient RNAfold:
0.457
NanoFolder:
0.406
Sensitivity RNAfold:
0.492
NanoFolder:
0.516
Positive Predictive Value RNAfold:
0.438
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
+
RNAfold vs PPfold(seed)
Matthews Correlation Coefficient RNAfold:
0.553
PPfold(seed):
0.202
Sensitivity RNAfold:
0.578
PPfold(seed):
0.066
Positive Predictive Value RNAfold:
0.539
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
?
CMfinder(seed) vs RNAfold
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAfold:
N/A
Sensitivity CMfinder(seed):
N/A
RNAfold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAfold vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAfold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAfold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAfold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNAfold vs DAFS(20)
Matthews Correlation Coefficient RNAfold:
N/A
DAFS(20):
N/A
Sensitivity RNAfold:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAfold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs RNAfold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
RNAfold:
N/A
Sensitivity PETfold_2.0(20):
N/A
RNAfold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNAfold
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAfold:
0.363
Sensitivity CMfinder(20):
0.500
RNAfold:
0.418
Positive Predictive Value CMfinder(20):
0.681
RNAfold:
0.325
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNAfold vs CRWrnafold
Matthews Correlation Coefficient RNAfold:
0.522
CRWrnafold:
0.502
Sensitivity RNAfold:
0.535
CRWrnafold:
0.516
Positive Predictive Value RNAfold:
0.525
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs RNAfold
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAfold:
N/A
Sensitivity DAFS(seed):
N/A
RNAfold:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAfold vs Mastr(seed)
Matthews Correlation Coefficient RNAfold:
0.589
Mastr(seed):
0.036
Sensitivity RNAfold:
0.625
Mastr(seed):
0.004
Positive Predictive Value RNAfold:
0.562
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
Afold |
16
CentroidAlifold(seed) vs Afold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.670
Afold:
0.539
Sensitivity CentroidAlifold(seed):
0.528
Afold:
0.585
Positive Predictive Value CentroidAlifold(seed):
0.856
Afold:
0.504
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
11
CentroidAlifold(20) vs Afold
Matthews Correlation Coefficient CentroidAlifold(20):
0.737
Afold:
0.547
Sensitivity CentroidAlifold(20):
0.610
Afold:
0.579
Positive Predictive Value CentroidAlifold(20):
0.894
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
5
PETfold_pre2.0(seed) vs Afold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.698
Afold:
0.454
Sensitivity PETfold_pre2.0(seed):
0.624
Afold:
0.495
Positive Predictive Value PETfold_pre2.0(seed):
0.788
Afold:
0.427
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
13
RNAalifold(seed) vs Afold
Matthews Correlation Coefficient RNAalifold(seed):
0.561
Afold:
0.552
Sensitivity RNAalifold(seed):
0.400
Afold:
0.600
Positive Predictive Value RNAalifold(seed):
0.791
Afold:
0.513
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.32823942078e-06
|
11
RNAalifold(20) vs Afold
Matthews Correlation Coefficient RNAalifold(20):
0.675
Afold:
0.547
Sensitivity RNAalifold(20):
0.575
Afold:
0.579
Positive Predictive Value RNAalifold(20):
0.796
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
16
MXScarna(seed) vs Afold
Matthews Correlation Coefficient MXScarna(seed):
0.678
Afold:
0.539
Sensitivity MXScarna(seed):
0.619
Afold:
0.585
Positive Predictive Value MXScarna(seed):
0.747
Afold:
0.504
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
26
CentroidFold vs Afold
Matthews Correlation Coefficient CentroidFold:
0.574
Afold:
0.459
Sensitivity CentroidFold:
0.565
Afold:
0.510
Positive Predictive Value CentroidFold:
0.583
Afold:
0.414
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
4
PPfold(20) vs Afold
Matthews Correlation Coefficient PPfold(20):
0.515
Afold:
0.501
Sensitivity PPfold(20):
0.459
Afold:
0.554
Positive Predictive Value PPfold(20):
0.586
Afold:
0.461
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
4
TurboFold(20) vs Afold
Matthews Correlation Coefficient TurboFold(20):
0.519
Afold:
0.501
Sensitivity TurboFold(20):
0.527
Afold:
0.554
Positive Predictive Value TurboFold(20):
0.520
Afold:
0.461
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
11
RNASampler(20) vs Afold
Matthews Correlation Coefficient RNASampler(20):
0.661
Afold:
0.547
Sensitivity RNASampler(20):
0.582
Afold:
0.579
Positive Predictive Value RNASampler(20):
0.755
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.69265863073e-08
|
11
MXScarna(20) vs Afold
Matthews Correlation Coefficient MXScarna(20):
0.645
Afold:
0.547
Sensitivity MXScarna(20):
0.597
Afold:
0.579
Positive Predictive Value MXScarna(20):
0.701
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
10
Afold vs ContextFold
Matthews Correlation Coefficient Afold:
0.373
ContextFold:
0.332
Sensitivity Afold:
0.410
ContextFold:
0.333
Positive Predictive Value Afold:
0.342
ContextFold:
0.333
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00890162725214
|
11
IPknot vs Afold
Matthews Correlation Coefficient IPknot:
0.442
Afold:
0.394
Sensitivity IPknot:
0.384
Afold:
0.429
Positive Predictive Value IPknot:
0.510
Afold:
0.363
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62930789924e-09
|
30
Contrafold vs Afold
Matthews Correlation Coefficient Contrafold:
0.585
Afold:
0.473
Sensitivity Contrafold:
0.610
Afold:
0.516
Positive Predictive Value Contrafold:
0.562
Afold:
0.434
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
Carnac(20) vs Afold
Matthews Correlation Coefficient Carnac(20):
0.648
Afold:
0.547
Sensitivity Carnac(20):
0.443
Afold:
0.579
Positive Predictive Value Carnac(20):
0.953
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.01312059156e-09
|
11
Murlet(20) vs Afold
Matthews Correlation Coefficient Murlet(20):
0.582
Afold:
0.547
Sensitivity Murlet(20):
0.472
Afold:
0.579
Positive Predictive Value Murlet(20):
0.725
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.71031696622e-08
|
3
PETfold_pre2.0(20) vs Afold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.428
Afold:
0.353
Sensitivity PETfold_pre2.0(20):
0.400
Afold:
0.420
Positive Predictive Value PETfold_pre2.0(20):
0.465
Afold:
0.304
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
30
Sfold vs Afold
Matthews Correlation Coefficient Sfold:
0.494
Afold:
0.473
Sensitivity Sfold:
0.500
Afold:
0.516
Positive Predictive Value Sfold:
0.488
Afold:
0.434
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
24
Pknots vs Afold
Matthews Correlation Coefficient Pknots:
0.687
Afold:
0.594
Sensitivity Pknots:
0.712
Afold:
0.609
Positive Predictive Value Pknots:
0.673
Afold:
0.592
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
23
MaxExpect vs Afold
Matthews Correlation Coefficient MaxExpect:
0.568
Afold:
0.487
Sensitivity MaxExpect:
0.588
Afold:
0.520
Positive Predictive Value MaxExpect:
0.550
Afold:
0.457
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
5
Afold vs TurboFold(seed)
Matthews Correlation Coefficient Afold:
0.524
TurboFold(seed):
0.409
Sensitivity Afold:
0.565
TurboFold(seed):
0.424
Positive Predictive Value Afold:
0.495
TurboFold(seed):
0.406
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
30
Afold vs PknotsRG
Matthews Correlation Coefficient Afold:
0.473
PknotsRG:
0.459
Sensitivity Afold:
0.516
PknotsRG:
0.502
Positive Predictive Value Afold:
0.434
PknotsRG:
0.419
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.62644058675e-08
|
10
Cylofold vs Afold
Matthews Correlation Coefficient Cylofold:
0.647
Afold:
0.632
Sensitivity Cylofold:
0.649
Afold:
0.649
Positive Predictive Value Cylofold:
0.655
Afold:
0.627
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.99684630116e-06
|
9
CentroidHomfold‑LAST vs Afold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.592
Afold:
0.494
Sensitivity CentroidHomfold‑LAST:
0.528
Afold:
0.523
Positive Predictive Value CentroidHomfold‑LAST:
0.674
Afold:
0.479
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
RNASLOpt vs Afold
Matthews Correlation Coefficient RNASLOpt:
0.547
Afold:
0.436
Sensitivity RNASLOpt:
0.560
Afold:
0.472
Positive Predictive Value RNASLOpt:
0.546
Afold:
0.417
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
30
Afold vs McQFold
Matthews Correlation Coefficient Afold:
0.473
McQFold:
0.358
Sensitivity Afold:
0.516
McQFold:
0.337
Positive Predictive Value Afold:
0.434
McQFold:
0.382
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
16
ProbKnot vs Afold
Matthews Correlation Coefficient ProbKnot:
0.424
Afold:
0.419
Sensitivity ProbKnot:
0.463
Afold:
0.465
Positive Predictive Value ProbKnot:
0.390
Afold:
0.380
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.42322841337e-08
|
30
Afold vs UNAFold
Matthews Correlation Coefficient Afold:
0.473
UNAFold:
0.470
Sensitivity Afold:
0.516
UNAFold:
0.508
Positive Predictive Value Afold:
0.434
UNAFold:
0.435
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 0.000127743011131
|
26
HotKnots vs Afold
Matthews Correlation Coefficient HotKnots:
0.566
Afold:
0.543
Sensitivity HotKnots:
0.611
Afold:
0.581
Positive Predictive Value HotKnots:
0.532
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
26
RNAshapes vs Afold
Matthews Correlation Coefficient RNAshapes:
0.554
Afold:
0.543
Sensitivity RNAshapes:
0.578
Afold:
0.581
Positive Predictive Value RNAshapes:
0.538
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
30
Afold vs RNAfold
Matthews Correlation Coefficient Afold:
0.473
RNAfold:
0.466
Sensitivity Afold:
0.516
RNAfold:
0.510
Positive Predictive Value Afold:
0.434
RNAfold:
0.427
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
|
-
RSpredict(20) vs Afold
Matthews Correlation Coefficient RSpredict(20):
0.585
Afold:
0.547
Sensitivity RSpredict(20):
0.553
Afold:
0.579
Positive Predictive Value RSpredict(20):
0.624
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
?
Multilign(seed) vs Afold
Matthews Correlation Coefficient Multilign(seed):
0.615
Afold:
0.587
Sensitivity Multilign(seed):
0.578
Afold:
0.600
Positive Predictive Value Multilign(seed):
0.667
Afold:
0.587
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
-
RNAsubopt vs Afold
Matthews Correlation Coefficient RNAsubopt:
0.569
Afold:
0.543
Sensitivity RNAsubopt:
0.603
Afold:
0.581
Positive Predictive Value RNAsubopt:
0.544
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
Afold vs Fold
Matthews Correlation Coefficient Afold:
0.435
Fold:
0.412
Sensitivity Afold:
0.481
Fold:
0.450
Positive Predictive Value Afold:
0.396
Fold:
0.378
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
+
Afold vs Vsfold4
Matthews Correlation Coefficient Afold:
0.543
Vsfold4:
0.535
Sensitivity Afold:
0.581
Vsfold4:
0.535
Positive Predictive Value Afold:
0.514
Vsfold4:
0.542
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 9.09278102266e-06
|
?
Afold vs RNASampler(seed)
Matthews Correlation Coefficient Afold:
0.590
RNASampler(seed):
0.572
Sensitivity Afold:
0.622
RNASampler(seed):
0.492
Positive Predictive Value Afold:
0.569
RNASampler(seed):
0.674
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Afold vs Multilign(20)
Matthews Correlation Coefficient Afold:
0.501
Multilign(20):
0.385
Sensitivity Afold:
0.554
Multilign(20):
0.419
Positive Predictive Value Afold:
0.461
Multilign(20):
0.365
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
=
Afold vs Mastr(20)
Matthews Correlation Coefficient Afold:
0.547
Mastr(20):
0.526
Sensitivity Afold:
0.579
Mastr(20):
0.333
Positive Predictive Value Afold:
0.524
Mastr(20):
0.835
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.00607931304316
|
+
Afold vs Murlet(seed)
Matthews Correlation Coefficient Afold:
0.657
Murlet(seed):
0.525
Sensitivity Afold:
0.664
Murlet(seed):
0.355
Positive Predictive Value Afold:
0.659
Murlet(seed):
0.788
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
+
Afold vs Vsfold5
Matthews Correlation Coefficient Afold:
0.543
Vsfold5:
0.512
Sensitivity Afold:
0.581
Vsfold5:
0.517
Positive Predictive Value Afold:
0.514
Vsfold5:
0.515
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 4.98094999346e-07
|
+
Afold vs Alterna
Matthews Correlation Coefficient Afold:
0.685
Alterna:
0.682
Sensitivity Afold:
0.678
Alterna:
0.668
Positive Predictive Value Afold:
0.705
Alterna:
0.710
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 0.000163747891751
|
+
Afold vs RDfolder
Matthews Correlation Coefficient Afold:
0.651
RDfolder:
0.583
Sensitivity Afold:
0.645
RDfolder:
0.528
Positive Predictive Value Afold:
0.672
RDfolder:
0.663
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
+
Afold vs MCFold
Matthews Correlation Coefficient Afold:
0.559
MCFold:
0.472
Sensitivity Afold:
0.582
MCFold:
0.520
Positive Predictive Value Afold:
0.549
MCFold:
0.444
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
+
Afold vs RNAwolf
Matthews Correlation Coefficient Afold:
0.394
RNAwolf:
0.281
Sensitivity Afold:
0.429
RNAwolf:
0.293
Positive Predictive Value Afold:
0.363
RNAwolf:
0.271
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
+
Afold vs RSpredict(seed)
Matthews Correlation Coefficient Afold:
0.539
RSpredict(seed):
0.354
Sensitivity Afold:
0.585
RSpredict(seed):
0.210
Positive Predictive Value Afold:
0.504
RSpredict(seed):
0.604
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
+
Afold vs Carnac(seed)
Matthews Correlation Coefficient Afold:
0.657
Carnac(seed):
0.123
Sensitivity Afold:
0.664
Carnac(seed):
0.015
Positive Predictive Value Afold:
0.659
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
?
Afold vs NanoFolder
Matthews Correlation Coefficient Afold:
0.404
NanoFolder:
0.338
Sensitivity Afold:
0.444
NanoFolder:
0.438
Positive Predictive Value Afold:
0.381
NanoFolder:
0.276
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Afold vs PPfold(seed)
Matthews Correlation Coefficient Afold:
0.529
PPfold(seed):
0.171
Sensitivity Afold:
0.560
PPfold(seed):
0.056
Positive Predictive Value Afold:
0.511
PPfold(seed):
0.538
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
CMfinder(seed) vs Afold
Matthews Correlation Coefficient CMfinder(seed):
N/A
Afold:
N/A
Sensitivity CMfinder(seed):
N/A
Afold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Afold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Afold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Afold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Afold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Afold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Afold vs DAFS(20)
Matthews Correlation Coefficient Afold:
N/A
DAFS(20):
N/A
Sensitivity Afold:
N/A
DAFS(20):
N/A
Positive Predictive Value Afold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Afold vs PETfold_2.0(20)
Matthews Correlation Coefficient Afold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Afold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Afold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Afold vs CMfinder(20)
Matthews Correlation Coefficient Afold:
0.258
CMfinder(20):
0.145
Sensitivity Afold:
0.333
CMfinder(20):
0.133
Positive Predictive Value Afold:
0.208
CMfinder(20):
0.167
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Afold vs CRWrnafold
Matthews Correlation Coefficient Afold:
0.477
CRWrnafold:
0.343
Sensitivity Afold:
0.520
CRWrnafold:
0.373
Positive Predictive Value Afold:
0.448
CRWrnafold:
0.329
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Afold
Matthews Correlation Coefficient DAFS(seed):
N/A
Afold:
N/A
Sensitivity DAFS(seed):
N/A
Afold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Afold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Afold vs Mastr(seed)
Matthews Correlation Coefficient Afold:
0.539
Mastr(seed):
0.000
Sensitivity Afold:
0.585
Mastr(seed):
0.000
Positive Predictive Value Afold:
0.504
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
RSpredict(20) |
21
CentroidAlifold(seed) vs RSpredict(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
RSpredict(20):
0.585
Sensitivity CentroidAlifold(seed):
0.575
RSpredict(20):
0.534
Positive Predictive Value CentroidAlifold(seed):
0.930
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
CentroidAlifold(20) vs RSpredict(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RSpredict(20):
0.585
Sensitivity CentroidAlifold(20):
0.664
RSpredict(20):
0.534
Positive Predictive Value CentroidAlifold(20):
0.900
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
11
PETfold_pre2.0(seed) vs RSpredict(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
RSpredict(20):
0.558
Sensitivity PETfold_pre2.0(seed):
0.751
RSpredict(20):
0.511
Positive Predictive Value PETfold_pre2.0(seed):
0.859
RSpredict(20):
0.611
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.10032755566e-08
|
17
RNAalifold(seed) vs RSpredict(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
RSpredict(20):
0.529
Sensitivity RNAalifold(seed):
0.487
RSpredict(20):
0.475
Positive Predictive Value RNAalifold(seed):
0.927
RSpredict(20):
0.597
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.54229534325e-08
|
21
RNAalifold(20) vs RSpredict(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RSpredict(20):
0.585
Sensitivity RNAalifold(20):
0.654
RSpredict(20):
0.534
Positive Predictive Value RNAalifold(20):
0.826
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
20
MXScarna(seed) vs RSpredict(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
RSpredict(20):
0.576
Sensitivity MXScarna(seed):
0.646
RSpredict(20):
0.523
Positive Predictive Value MXScarna(seed):
0.779
RSpredict(20):
0.642
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
CentroidFold vs RSpredict(20)
Matthews Correlation Coefficient CentroidFold:
0.667
RSpredict(20):
0.585
Sensitivity CentroidFold:
0.649
RSpredict(20):
0.534
Positive Predictive Value CentroidFold:
0.692
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
12
PPfold(20) vs RSpredict(20)
Matthews Correlation Coefficient PPfold(20):
0.668
RSpredict(20):
0.515
Sensitivity PPfold(20):
0.614
RSpredict(20):
0.486
Positive Predictive Value PPfold(20):
0.733
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
12
TurboFold(20) vs RSpredict(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
RSpredict(20):
0.515
Sensitivity TurboFold(20):
0.629
RSpredict(20):
0.486
Positive Predictive Value TurboFold(20):
0.649
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
21
RNASampler(20) vs RSpredict(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
RSpredict(20):
0.585
Sensitivity RNASampler(20):
0.621
RSpredict(20):
0.534
Positive Predictive Value RNASampler(20):
0.776
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
MXScarna(20) vs RSpredict(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
RSpredict(20):
0.585
Sensitivity MXScarna(20):
0.640
RSpredict(20):
0.534
Positive Predictive Value MXScarna(20):
0.724
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
10
ContextFold vs RSpredict(20)
Matthews Correlation Coefficient ContextFold:
0.558
RSpredict(20):
0.419
Sensitivity ContextFold:
0.544
RSpredict(20):
0.388
Positive Predictive Value ContextFold:
0.580
RSpredict(20):
0.462
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.70625200892e-09
|
12
IPknot vs RSpredict(20)
Matthews Correlation Coefficient IPknot:
0.536
RSpredict(20):
0.515
Sensitivity IPknot:
0.525
RSpredict(20):
0.486
Positive Predictive Value IPknot:
0.557
RSpredict(20):
0.555
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.17141857566e-06
|
21
Contrafold vs RSpredict(20)
Matthews Correlation Coefficient Contrafold:
0.608
RSpredict(20):
0.585
Sensitivity Contrafold:
0.621
RSpredict(20):
0.534
Positive Predictive Value Contrafold:
0.601
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.90849426981e-06
|
21
Carnac(20) vs RSpredict(20)
Matthews Correlation Coefficient Carnac(20):
0.641
RSpredict(20):
0.585
Sensitivity Carnac(20):
0.456
RSpredict(20):
0.534
Positive Predictive Value Carnac(20):
0.908
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
21
Murlet(20) vs RSpredict(20)
Matthews Correlation Coefficient Murlet(20):
0.625
RSpredict(20):
0.585
Sensitivity Murlet(20):
0.530
RSpredict(20):
0.534
Positive Predictive Value Murlet(20):
0.744
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
11
PETfold_pre2.0(20) vs RSpredict(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.718
RSpredict(20):
0.558
Sensitivity PETfold_pre2.0(20):
0.682
RSpredict(20):
0.511
Positive Predictive Value PETfold_pre2.0(20):
0.758
RSpredict(20):
0.611
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
21
Sfold vs RSpredict(20)
Matthews Correlation Coefficient Sfold:
0.609
RSpredict(20):
0.585
Sensitivity Sfold:
0.583
RSpredict(20):
0.534
Positive Predictive Value Sfold:
0.642
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.18380060481e-06
|
20
Pknots vs RSpredict(20)
Matthews Correlation Coefficient Pknots:
0.590
RSpredict(20):
0.579
Sensitivity Pknots:
0.630
RSpredict(20):
0.527
Positive Predictive Value Pknots:
0.561
RSpredict(20):
0.645
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 7.70630550616e-06
|
21
MaxExpect vs RSpredict(20)
Matthews Correlation Coefficient MaxExpect:
0.608
RSpredict(20):
0.585
Sensitivity MaxExpect:
0.611
RSpredict(20):
0.534
Positive Predictive Value MaxExpect:
0.612
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 7.82343438163e-08
|
9
TurboFold(seed) vs RSpredict(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
RSpredict(20):
0.469
Sensitivity TurboFold(seed):
0.554
RSpredict(20):
0.451
Positive Predictive Value TurboFold(seed):
0.560
RSpredict(20):
0.497
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
21
PknotsRG vs RSpredict(20)
Matthews Correlation Coefficient PknotsRG:
0.598
RSpredict(20):
0.585
Sensitivity PknotsRG:
0.633
RSpredict(20):
0.534
Positive Predictive Value PknotsRG:
0.571
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000981259648556
|
9
Cylofold vs RSpredict(20)
Matthews Correlation Coefficient Cylofold:
0.752
RSpredict(20):
0.633
Sensitivity Cylofold:
0.734
RSpredict(20):
0.576
Positive Predictive Value Cylofold:
0.778
RSpredict(20):
0.706
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
CentroidHomfold‑LAST vs RSpredict(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.572
RSpredict(20):
0.537
Sensitivity CentroidHomfold‑LAST:
0.578
RSpredict(20):
0.509
Positive Predictive Value CentroidHomfold‑LAST:
0.576
RSpredict(20):
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.38747296323e-06
|
10
RNASLOpt vs RSpredict(20)
Matthews Correlation Coefficient RNASLOpt:
0.480
RSpredict(20):
0.419
Sensitivity RNASLOpt:
0.500
RSpredict(20):
0.388
Positive Predictive Value RNASLOpt:
0.470
RSpredict(20):
0.462
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.70002765408e-09
|
21
McQFold vs RSpredict(20)
Matthews Correlation Coefficient McQFold:
0.613
RSpredict(20):
0.585
Sensitivity McQFold:
0.628
RSpredict(20):
0.534
Positive Predictive Value McQFold:
0.605
RSpredict(20):
0.649
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.05835476236e-07
|
16
ProbKnot vs RSpredict(20)
Matthews Correlation Coefficient ProbKnot:
0.562
RSpredict(20):
0.529
Sensitivity ProbKnot:
0.600
RSpredict(20):
0.488
Positive Predictive Value ProbKnot:
0.532
RSpredict(20):
0.581
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.95402773876e-08
|
21
RSpredict(20) vs UNAFold
Matthews Correlation Coefficient RSpredict(20):
0.585
UNAFold:
0.581
Sensitivity RSpredict(20):
0.534
UNAFold:
0.602
Positive Predictive Value RSpredict(20):
0.649
UNAFold:
0.568
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.00213378455536
|
21
RSpredict(20) vs HotKnots
Matthews Correlation Coefficient RSpredict(20):
0.585
HotKnots:
0.548
Sensitivity RSpredict(20):
0.534
HotKnots:
0.585
Positive Predictive Value RSpredict(20):
0.649
HotKnots:
0.520
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.47879201823e-07
|
21
RSpredict(20) vs RNAshapes
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAshapes:
0.576
Sensitivity RSpredict(20):
0.534
RNAshapes:
0.596
Positive Predictive Value RSpredict(20):
0.649
RNAshapes:
0.564
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000863404212649
|
21
RSpredict(20) vs RNAfold
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAfold:
0.572
Sensitivity RSpredict(20):
0.534
RNAfold:
0.601
Positive Predictive Value RSpredict(20):
0.649
RNAfold:
0.552
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.00147506668047
|
11
RSpredict(20) vs Afold
Matthews Correlation Coefficient RSpredict(20):
0.585
Afold:
0.547
Sensitivity RSpredict(20):
0.553
Afold:
0.579
Positive Predictive Value RSpredict(20):
0.624
Afold:
0.524
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.74569091494e-09
|
|
?
Multilign(seed) vs RSpredict(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
RSpredict(20):
0.521
Sensitivity Multilign(seed):
0.587
RSpredict(20):
0.484
Positive Predictive Value Multilign(seed):
0.673
RSpredict(20):
0.570
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
RSpredict(20) vs RNAsubopt
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAsubopt:
0.564
Sensitivity RSpredict(20):
0.534
RNAsubopt:
0.596
Positive Predictive Value RSpredict(20):
0.649
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000125008035357
|
=
RSpredict(20) vs Fold
Matthews Correlation Coefficient RSpredict(20):
0.529
Fold:
0.526
Sensitivity RSpredict(20):
0.488
Fold:
0.562
Positive Predictive Value RSpredict(20):
0.581
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 0.00262814042589
|
+
RSpredict(20) vs Vsfold4
Matthews Correlation Coefficient RSpredict(20):
0.598
Vsfold4:
0.537
Sensitivity RSpredict(20):
0.545
Vsfold4:
0.531
Positive Predictive Value RSpredict(20):
0.663
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.50294594097e-08
|
?
RNASampler(seed) vs RSpredict(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
RSpredict(20):
0.518
Sensitivity RNASampler(seed):
0.525
RSpredict(20):
0.558
Positive Predictive Value RNASampler(seed):
0.638
RSpredict(20):
0.488
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RSpredict(20) vs Multilign(20)
Matthews Correlation Coefficient RSpredict(20):
0.537
Multilign(20):
0.517
Sensitivity RSpredict(20):
0.509
Multilign(20):
0.530
Positive Predictive Value RSpredict(20):
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.3949608788e-07
|
+
RSpredict(20) vs Mastr(20)
Matthews Correlation Coefficient RSpredict(20):
0.585
Mastr(20):
0.508
Sensitivity RSpredict(20):
0.534
Mastr(20):
0.329
Positive Predictive Value RSpredict(20):
0.649
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
-
Murlet(seed) vs RSpredict(20)
Matthews Correlation Coefficient Murlet(seed):
0.564
RSpredict(20):
0.508
Sensitivity Murlet(seed):
0.366
RSpredict(20):
0.453
Positive Predictive Value Murlet(seed):
0.876
RSpredict(20):
0.579
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
+
RSpredict(20) vs Vsfold5
Matthews Correlation Coefficient RSpredict(20):
0.598
Vsfold5:
0.493
Sensitivity RSpredict(20):
0.545
Vsfold5:
0.493
Positive Predictive Value RSpredict(20):
0.663
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
?
RSpredict(20) vs Alterna
Matthews Correlation Coefficient RSpredict(20):
0.828
Alterna:
0.593
Sensitivity RSpredict(20):
0.760
Alterna:
0.596
Positive Predictive Value RSpredict(20):
0.909
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
RSpredict(20) vs RDfolder
Matthews Correlation Coefficient RSpredict(20):
0.760
RDfolder:
0.641
Sensitivity RSpredict(20):
0.678
RDfolder:
0.585
Positive Predictive Value RSpredict(20):
0.863
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
+
RSpredict(20) vs MCFold
Matthews Correlation Coefficient RSpredict(20):
0.622
MCFold:
0.453
Sensitivity RSpredict(20):
0.595
MCFold:
0.507
Positive Predictive Value RSpredict(20):
0.658
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
+
RSpredict(20) vs RNAwolf
Matthews Correlation Coefficient RSpredict(20):
0.515
RNAwolf:
0.396
Sensitivity RSpredict(20):
0.486
RNAwolf:
0.425
Positive Predictive Value RSpredict(20):
0.555
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
+
RSpredict(20) vs RSpredict(seed)
Matthews Correlation Coefficient RSpredict(20):
0.613
RSpredict(seed):
0.425
Sensitivity RSpredict(20):
0.558
RSpredict(seed):
0.259
Positive Predictive Value RSpredict(20):
0.676
RSpredict(seed):
0.701
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RSpredict(20) vs Carnac(seed)
Matthews Correlation Coefficient RSpredict(20):
0.508
Carnac(seed):
0.000
Sensitivity RSpredict(20):
0.453
Carnac(seed):
0.000
Positive Predictive Value RSpredict(20):
0.579
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
?
RSpredict(20) vs NanoFolder
Matthews Correlation Coefficient RSpredict(20):
0.373
NanoFolder:
0.314
Sensitivity RSpredict(20):
0.368
NanoFolder:
0.427
Positive Predictive Value RSpredict(20):
0.387
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
RSpredict(20) vs PPfold(seed)
Matthews Correlation Coefficient RSpredict(20):
0.515
PPfold(seed):
0.073
Sensitivity RSpredict(20):
0.486
PPfold(seed):
0.019
Positive Predictive Value RSpredict(20):
0.555
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
?
RSpredict(20) vs CMfinder(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
CMfinder(seed):
N/A
Sensitivity RSpredict(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RSpredict(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RSpredict(20) vs DAFS(20)
Matthews Correlation Coefficient RSpredict(20):
N/A
DAFS(20):
N/A
Sensitivity RSpredict(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RSpredict(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RSpredict(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RSpredict(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
RSpredict(20):
0.491
Sensitivity CMfinder(20):
0.500
RSpredict(20):
0.480
Positive Predictive Value CMfinder(20):
0.681
RSpredict(20):
0.511
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RSpredict(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
RSpredict(20):
0.494
Sensitivity CRWrnafold:
0.611
RSpredict(20):
0.454
Positive Predictive Value CRWrnafold:
0.584
RSpredict(20):
0.551
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RSpredict(20) vs DAFS(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
DAFS(seed):
N/A
Sensitivity RSpredict(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RSpredict(20) vs Mastr(seed)
Matthews Correlation Coefficient RSpredict(20):
0.585
Mastr(seed):
0.000
Sensitivity RSpredict(20):
0.534
Mastr(seed):
0.000
Positive Predictive Value RSpredict(20):
0.649
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
Multilign(seed) |
10
CentroidAlifold(seed) vs Multilign(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.761
Multilign(seed):
0.658
Sensitivity CentroidAlifold(seed):
0.619
Multilign(seed):
0.608
Positive Predictive Value CentroidAlifold(seed):
0.942
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.45186852942e-09
|
5
CentroidAlifold(20) vs Multilign(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.706
Multilign(seed):
0.625
Sensitivity CentroidAlifold(20):
0.571
Multilign(seed):
0.587
Positive Predictive Value CentroidAlifold(20):
0.878
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
8
PETfold_pre2.0(seed) vs Multilign(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.766
Multilign(seed):
0.628
Sensitivity PETfold_pre2.0(seed):
0.686
Multilign(seed):
0.575
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Multilign(seed):
0.696
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
10
Multilign(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAalifold(seed):
0.641
Sensitivity Multilign(seed):
0.608
RNAalifold(seed):
0.485
Positive Predictive Value Multilign(seed):
0.721
RNAalifold(seed):
0.857
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00176439510334
|
5
RNAalifold(20) vs Multilign(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.689
Multilign(seed):
0.625
Sensitivity RNAalifold(20):
0.635
Multilign(seed):
0.587
Positive Predictive Value RNAalifold(20):
0.755
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
10
Multilign(seed) vs MXScarna(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
MXScarna(seed):
0.631
Sensitivity Multilign(seed):
0.608
MXScarna(seed):
0.577
Positive Predictive Value Multilign(seed):
0.721
MXScarna(seed):
0.701
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.19583565668e-08
|
10
CentroidFold vs Multilign(seed)
Matthews Correlation Coefficient CentroidFold:
0.721
Multilign(seed):
0.658
Sensitivity CentroidFold:
0.662
Multilign(seed):
0.608
Positive Predictive Value CentroidFold:
0.793
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
5
PPfold(20) vs Multilign(seed)
Matthews Correlation Coefficient PPfold(20):
0.673
Multilign(seed):
0.625
Sensitivity PPfold(20):
0.611
Multilign(seed):
0.587
Positive Predictive Value PPfold(20):
0.748
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Multilign(seed) vs TurboFold(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
TurboFold(20):
0.619
Sensitivity Multilign(seed):
0.587
TurboFold(20):
0.595
Positive Predictive Value Multilign(seed):
0.673
TurboFold(20):
0.652
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Multilign(seed) vs RNASampler(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
RNASampler(20):
0.611
Sensitivity Multilign(seed):
0.587
RNASampler(20):
0.548
Positive Predictive Value Multilign(seed):
0.673
RNASampler(20):
0.690
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Multilign(seed) vs MXScarna(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
MXScarna(20):
0.602
Sensitivity Multilign(seed):
0.587
MXScarna(20):
0.571
Positive Predictive Value Multilign(seed):
0.673
MXScarna(20):
0.643
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
8
Multilign(seed) vs ContextFold
Matthews Correlation Coefficient Multilign(seed):
0.628
ContextFold:
0.588
Sensitivity Multilign(seed):
0.575
ContextFold:
0.565
Positive Predictive Value Multilign(seed):
0.696
ContextFold:
0.622
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
10
IPknot vs Multilign(seed)
Matthews Correlation Coefficient IPknot:
0.715
Multilign(seed):
0.658
Sensitivity IPknot:
0.665
Multilign(seed):
0.608
Positive Predictive Value IPknot:
0.776
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
10
Contrafold vs Multilign(seed)
Matthews Correlation Coefficient Contrafold:
0.692
Multilign(seed):
0.658
Sensitivity Contrafold:
0.673
Multilign(seed):
0.608
Positive Predictive Value Contrafold:
0.720
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.12364306555e-08
|
5
Multilign(seed) vs Carnac(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
Carnac(20):
0.616
Sensitivity Multilign(seed):
0.587
Carnac(20):
0.444
Positive Predictive Value Multilign(seed):
0.673
Carnac(20):
0.862
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Murlet(20) vs Multilign(seed)
Matthews Correlation Coefficient Murlet(20):
0.682
Multilign(seed):
0.625
Sensitivity Murlet(20):
0.619
Multilign(seed):
0.587
Positive Predictive Value Murlet(20):
0.757
Multilign(seed):
0.673
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
3
PETfold_pre2.0(20) vs Multilign(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.553
Multilign(seed):
0.517
Sensitivity PETfold_pre2.0(20):
0.521
Multilign(seed):
0.479
Positive Predictive Value PETfold_pre2.0(20):
0.594
Multilign(seed):
0.565
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
10
Sfold vs Multilign(seed)
Matthews Correlation Coefficient Sfold:
0.664
Multilign(seed):
0.658
Sensitivity Sfold:
0.627
Multilign(seed):
0.608
Positive Predictive Value Sfold:
0.712
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.95715734741e-05
|
10
Multilign(seed) vs Pknots
Matthews Correlation Coefficient Multilign(seed):
0.658
Pknots:
0.599
Sensitivity Multilign(seed):
0.608
Pknots:
0.631
Positive Predictive Value Multilign(seed):
0.721
Pknots:
0.580
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.47054079186e-08
|
10
MaxExpect vs Multilign(seed)
Matthews Correlation Coefficient MaxExpect:
0.660
Multilign(seed):
0.658
Sensitivity MaxExpect:
0.635
Multilign(seed):
0.608
Positive Predictive Value MaxExpect:
0.696
Multilign(seed):
0.721
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00166418410914
|
9
TurboFold(seed) vs Multilign(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.667
Multilign(seed):
0.618
Sensitivity TurboFold(seed):
0.634
Multilign(seed):
0.568
Positive Predictive Value TurboFold(seed):
0.709
Multilign(seed):
0.683
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
10
Multilign(seed) vs PknotsRG
Matthews Correlation Coefficient Multilign(seed):
0.658
PknotsRG:
0.652
Sensitivity Multilign(seed):
0.608
PknotsRG:
0.665
Positive Predictive Value Multilign(seed):
0.721
PknotsRG:
0.648
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.0227611648726
|
6
Multilign(seed) vs Cylofold
Matthews Correlation Coefficient Multilign(seed):
0.637
Cylofold:
0.557
Sensitivity Multilign(seed):
0.578
Cylofold:
0.509
Positive Predictive Value Multilign(seed):
0.715
Cylofold:
0.626
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
CentroidHomfold‑LAST vs Multilign(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.643
Multilign(seed):
0.628
Sensitivity CentroidHomfold‑LAST:
0.600
Multilign(seed):
0.575
Positive Predictive Value CentroidHomfold‑LAST:
0.702
Multilign(seed):
0.697
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
Multilign(seed) vs RNASLOpt
Matthews Correlation Coefficient Multilign(seed):
0.628
RNASLOpt:
0.536
Sensitivity Multilign(seed):
0.575
RNASLOpt:
0.507
Positive Predictive Value Multilign(seed):
0.696
RNASLOpt:
0.577
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
10
Multilign(seed) vs McQFold
Matthews Correlation Coefficient Multilign(seed):
0.658
McQFold:
0.633
Sensitivity Multilign(seed):
0.608
McQFold:
0.623
Positive Predictive Value Multilign(seed):
0.721
McQFold:
0.653
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.57935810139e-05
|
10
Multilign(seed) vs ProbKnot
Matthews Correlation Coefficient Multilign(seed):
0.658
ProbKnot:
0.641
Sensitivity Multilign(seed):
0.608
ProbKnot:
0.650
Positive Predictive Value Multilign(seed):
0.721
ProbKnot:
0.643
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.43282458231e-08
|
10
Multilign(seed) vs UNAFold
Matthews Correlation Coefficient Multilign(seed):
0.658
UNAFold:
0.588
Sensitivity Multilign(seed):
0.608
UNAFold:
0.592
Positive Predictive Value Multilign(seed):
0.721
UNAFold:
0.595
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
10
Multilign(seed) vs HotKnots
Matthews Correlation Coefficient Multilign(seed):
0.658
HotKnots:
0.598
Sensitivity Multilign(seed):
0.608
HotKnots:
0.627
Positive Predictive Value Multilign(seed):
0.721
HotKnots:
0.582
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 5.26393416207e-08
|
10
Multilign(seed) vs RNAshapes
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAshapes:
0.645
Sensitivity Multilign(seed):
0.608
RNAshapes:
0.650
Positive Predictive Value Multilign(seed):
0.721
RNAshapes:
0.650
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.0027398973824
|
10
Multilign(seed) vs RNAfold
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAfold:
0.644
Sensitivity Multilign(seed):
0.608
RNAfold:
0.654
Positive Predictive Value Multilign(seed):
0.721
RNAfold:
0.644
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.00428277394435
|
4
Multilign(seed) vs Afold
Matthews Correlation Coefficient Multilign(seed):
0.615
Afold:
0.587
Sensitivity Multilign(seed):
0.578
Afold:
0.600
Positive Predictive Value Multilign(seed):
0.667
Afold:
0.587
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
5
Multilign(seed) vs RSpredict(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
RSpredict(20):
0.521
Sensitivity Multilign(seed):
0.587
RSpredict(20):
0.484
Positive Predictive Value Multilign(seed):
0.673
RSpredict(20):
0.570
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
|
+
Multilign(seed) vs RNAsubopt
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAsubopt:
0.630
Sensitivity Multilign(seed):
0.608
RNAsubopt:
0.642
Positive Predictive Value Multilign(seed):
0.721
RNAsubopt:
0.628
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.64079570066e-08
|
+
Multilign(seed) vs Fold
Matthews Correlation Coefficient Multilign(seed):
0.658
Fold:
0.598
Sensitivity Multilign(seed):
0.608
Fold:
0.612
Positive Predictive Value Multilign(seed):
0.721
Fold:
0.596
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.45186852942e-09
|
?
Multilign(seed) vs Vsfold4
Matthews Correlation Coefficient Multilign(seed):
0.678
Vsfold4:
0.489
Sensitivity Multilign(seed):
0.634
Vsfold4:
0.477
Positive Predictive Value Multilign(seed):
0.736
Vsfold4:
0.519
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs RNASampler(seed)
Matthews Correlation Coefficient Multilign(seed):
0.642
RNASampler(seed):
0.519
Sensitivity Multilign(seed):
0.599
RNASampler(seed):
0.407
Positive Predictive Value Multilign(seed):
0.696
RNASampler(seed):
0.673
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs Multilign(20)
Matthews Correlation Coefficient Multilign(seed):
0.659
Multilign(20):
0.578
Sensitivity Multilign(seed):
0.629
Multilign(20):
0.588
Positive Predictive Value Multilign(seed):
0.701
Multilign(20):
0.582
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs Mastr(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
Mastr(20):
0.531
Sensitivity Multilign(seed):
0.587
Mastr(20):
0.381
Positive Predictive Value Multilign(seed):
0.673
Mastr(20):
0.750
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
Multilign(seed) vs Murlet(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Murlet(seed):
0.495
Sensitivity Multilign(seed):
0.608
Murlet(seed):
0.323
Positive Predictive Value Multilign(seed):
0.721
Murlet(seed):
0.771
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.61680779366e-09
|
?
Multilign(seed) vs Vsfold5
Matthews Correlation Coefficient Multilign(seed):
0.628
Vsfold5:
0.447
Sensitivity Multilign(seed):
0.575
Vsfold5:
0.450
Positive Predictive Value Multilign(seed):
0.697
Vsfold5:
0.462
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Alterna vs Multilign(seed)
Matthews Correlation Coefficient Alterna:
0.624
Multilign(seed):
0.589
Sensitivity Alterna:
0.606
Multilign(seed):
0.549
Positive Predictive Value Alterna:
0.662
Multilign(seed):
0.650
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs RDfolder
Matthews Correlation Coefficient Multilign(seed):
0.704
RDfolder:
0.403
Sensitivity Multilign(seed):
0.654
RDfolder:
0.353
Positive Predictive Value Multilign(seed):
0.770
RDfolder:
0.485
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs MCFold
Matthews Correlation Coefficient Multilign(seed):
0.528
MCFold:
0.423
Sensitivity Multilign(seed):
0.479
MCFold:
0.455
Positive Predictive Value Multilign(seed):
0.593
MCFold:
0.406
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Multilign(seed) vs RNAwolf
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAwolf:
0.452
Sensitivity Multilign(seed):
0.608
RNAwolf:
0.458
Positive Predictive Value Multilign(seed):
0.721
RNAwolf:
0.461
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
+
Multilign(seed) vs RSpredict(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
RSpredict(seed):
0.321
Sensitivity Multilign(seed):
0.608
RSpredict(seed):
0.188
Positive Predictive Value Multilign(seed):
0.721
RSpredict(seed):
0.563
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.84765843136e-09
|
+
Multilign(seed) vs Carnac(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Carnac(seed):
0.296
Sensitivity Multilign(seed):
0.608
Carnac(seed):
0.088
Positive Predictive Value Multilign(seed):
0.721
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
?
Multilign(seed) vs NanoFolder
Matthews Correlation Coefficient Multilign(seed):
0.637
NanoFolder:
0.319
Sensitivity Multilign(seed):
0.588
NanoFolder:
0.387
Positive Predictive Value Multilign(seed):
0.700
NanoFolder:
0.284
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
+
Multilign(seed) vs PPfold(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
PPfold(seed):
0.258
Sensitivity Multilign(seed):
0.608
PPfold(seed):
0.088
Positive Predictive Value Multilign(seed):
0.721
PPfold(seed):
0.767
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
?
Multilign(seed) vs CMfinder(seed)
Matthews Correlation Coefficient Multilign(seed):
N/A
CMfinder(seed):
N/A
Sensitivity Multilign(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Multilign(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Multilign(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Multilign(seed):
0.967
PETfold_2.0(seed):
0.831
Sensitivity Multilign(seed):
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Multilign(seed):
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs DAFS(20)
Matthews Correlation Coefficient Multilign(seed):
N/A
DAFS(20):
N/A
Sensitivity Multilign(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Multilign(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Multilign(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Multilign(seed) vs CMfinder(20)
Matthews Correlation Coefficient Multilign(seed):
0.189
CMfinder(20):
0.145
Sensitivity Multilign(seed):
0.200
CMfinder(20):
0.133
Positive Predictive Value Multilign(seed):
0.188
CMfinder(20):
0.167
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs CRWrnafold
Matthews Correlation Coefficient Multilign(seed):
0.540
CRWrnafold:
0.513
Sensitivity Multilign(seed):
0.500
CRWrnafold:
0.513
Positive Predictive Value Multilign(seed):
0.603
CRWrnafold:
0.534
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(seed) vs DAFS(seed)
Matthews Correlation Coefficient Multilign(seed):
N/A
DAFS(seed):
N/A
Sensitivity Multilign(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value Multilign(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Multilign(seed) vs Mastr(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Mastr(seed):
0.064
Sensitivity Multilign(seed):
0.608
Mastr(seed):
0.012
Positive Predictive Value Multilign(seed):
0.721
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
RNAsubopt |
29
CentroidAlifold(seed) vs RNAsubopt
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
RNAsubopt:
0.573
Sensitivity CentroidAlifold(seed):
0.584
RNAsubopt:
0.610
Positive Predictive Value CentroidAlifold(seed):
0.900
RNAsubopt:
0.546
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
CentroidAlifold(20) vs RNAsubopt
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RNAsubopt:
0.564
Sensitivity CentroidAlifold(20):
0.664
RNAsubopt:
0.596
Positive Predictive Value CentroidAlifold(20):
0.900
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
15
PETfold_pre2.0(seed) vs RNAsubopt
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
RNAsubopt:
0.523
Sensitivity PETfold_pre2.0(seed):
0.726
RNAsubopt:
0.562
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RNAsubopt:
0.497
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
24
RNAalifold(seed) vs RNAsubopt
Matthews Correlation Coefficient RNAalifold(seed):
0.644
RNAsubopt:
0.593
Sensitivity RNAalifold(seed):
0.478
RNAsubopt:
0.630
Positive Predictive Value RNAalifold(seed):
0.874
RNAsubopt:
0.565
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAalifold(20) vs RNAsubopt
Matthews Correlation Coefficient RNAalifold(20):
0.733
RNAsubopt:
0.564
Sensitivity RNAalifold(20):
0.654
RNAsubopt:
0.596
Positive Predictive Value RNAalifold(20):
0.826
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
28
MXScarna(seed) vs RNAsubopt
Matthews Correlation Coefficient MXScarna(seed):
0.687
RNAsubopt:
0.572
Sensitivity MXScarna(seed):
0.636
RNAsubopt:
0.607
Positive Predictive Value MXScarna(seed):
0.748
RNAsubopt:
0.545
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
38
CentroidFold vs RNAsubopt
Matthews Correlation Coefficient CentroidFold:
0.687
RNAsubopt:
0.583
Sensitivity CentroidFold:
0.678
RNAsubopt:
0.615
Positive Predictive Value CentroidFold:
0.703
RNAsubopt:
0.559
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs RNAsubopt
Matthews Correlation Coefficient PPfold(20):
0.668
RNAsubopt:
0.489
Sensitivity PPfold(20):
0.614
RNAsubopt:
0.537
Positive Predictive Value PPfold(20):
0.733
RNAsubopt:
0.456
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
12
TurboFold(20) vs RNAsubopt
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAsubopt:
0.489
Sensitivity TurboFold(20):
0.629
RNAsubopt:
0.537
Positive Predictive Value TurboFold(20):
0.649
RNAsubopt:
0.456
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
21
RNASampler(20) vs RNAsubopt
Matthews Correlation Coefficient RNASampler(20):
0.692
RNAsubopt:
0.564
Sensitivity RNASampler(20):
0.621
RNAsubopt:
0.596
Positive Predictive Value RNASampler(20):
0.776
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
MXScarna(20) vs RNAsubopt
Matthews Correlation Coefficient MXScarna(20):
0.678
RNAsubopt:
0.564
Sensitivity MXScarna(20):
0.640
RNAsubopt:
0.596
Positive Predictive Value MXScarna(20):
0.724
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
20
ContextFold vs RNAsubopt
Matthews Correlation Coefficient ContextFold:
0.619
RNAsubopt:
0.509
Sensitivity ContextFold:
0.594
RNAsubopt:
0.545
Positive Predictive Value ContextFold:
0.655
RNAsubopt:
0.487
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
IPknot vs RNAsubopt
Matthews Correlation Coefficient IPknot:
0.637
RNAsubopt:
0.540
Sensitivity IPknot:
0.613
RNAsubopt:
0.571
Positive Predictive Value IPknot:
0.672
RNAsubopt:
0.522
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
41
Contrafold vs RNAsubopt
Matthews Correlation Coefficient Contrafold:
0.649
RNAsubopt:
0.581
Sensitivity Contrafold:
0.666
RNAsubopt:
0.612
Positive Predictive Value Contrafold:
0.638
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Carnac(20) vs RNAsubopt
Matthews Correlation Coefficient Carnac(20):
0.641
RNAsubopt:
0.564
Sensitivity Carnac(20):
0.456
RNAsubopt:
0.596
Positive Predictive Value Carnac(20):
0.908
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
21
Murlet(20) vs RNAsubopt
Matthews Correlation Coefficient Murlet(20):
0.625
RNAsubopt:
0.564
Sensitivity Murlet(20):
0.530
RNAsubopt:
0.596
Positive Predictive Value Murlet(20):
0.744
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PETfold_pre2.0(20) vs RNAsubopt
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAsubopt:
0.420
Sensitivity PETfold_pre2.0(20):
0.597
RNAsubopt:
0.476
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAsubopt:
0.381
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
41
Sfold vs RNAsubopt
Matthews Correlation Coefficient Sfold:
0.617
RNAsubopt:
0.581
Sensitivity Sfold:
0.604
RNAsubopt:
0.612
Positive Predictive Value Sfold:
0.638
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
Pknots vs RNAsubopt
Matthews Correlation Coefficient Pknots:
0.648
RNAsubopt:
0.608
Sensitivity Pknots:
0.676
RNAsubopt:
0.626
Positive Predictive Value Pknots:
0.630
RNAsubopt:
0.602
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
36
MaxExpect vs RNAsubopt
Matthews Correlation Coefficient MaxExpect:
0.601
RNAsubopt:
0.573
Sensitivity MaxExpect:
0.613
RNAsubopt:
0.607
Positive Predictive Value MaxExpect:
0.596
RNAsubopt:
0.548
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs RNAsubopt
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAsubopt:
0.528
Sensitivity TurboFold(seed):
0.598
RNAsubopt:
0.561
Positive Predictive Value TurboFold(seed):
0.630
RNAsubopt:
0.508
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
41
PknotsRG vs RNAsubopt
Matthews Correlation Coefficient PknotsRG:
0.599
RNAsubopt:
0.581
Sensitivity PknotsRG:
0.636
RNAsubopt:
0.612
Positive Predictive Value PknotsRG:
0.571
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
19
Cylofold vs RNAsubopt
Matthews Correlation Coefficient Cylofold:
0.669
RNAsubopt:
0.647
Sensitivity Cylofold:
0.648
RNAsubopt:
0.653
Positive Predictive Value Cylofold:
0.700
RNAsubopt:
0.653
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 6.51352570602e-08
|
19
CentroidHomfold‑LAST vs RNAsubopt
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAsubopt:
0.531
Sensitivity CentroidHomfold‑LAST:
0.565
RNAsubopt:
0.559
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAsubopt:
0.516
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
20
RNASLOpt vs RNAsubopt
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAsubopt:
0.509
Sensitivity RNASLOpt:
0.555
RNAsubopt:
0.545
Positive Predictive Value RNASLOpt:
0.572
RNAsubopt:
0.487
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
41
McQFold vs RNAsubopt
Matthews Correlation Coefficient McQFold:
0.625
RNAsubopt:
0.581
Sensitivity McQFold:
0.641
RNAsubopt:
0.612
Positive Predictive Value McQFold:
0.616
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
29
ProbKnot vs RNAsubopt
Matthews Correlation Coefficient ProbKnot:
0.557
RNAsubopt:
0.555
Sensitivity ProbKnot:
0.598
RNAsubopt:
0.597
Positive Predictive Value ProbKnot:
0.526
RNAsubopt:
0.522
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 0.0824697876226
|
41
UNAFold vs RNAsubopt
Matthews Correlation Coefficient UNAFold:
0.595
RNAsubopt:
0.581
Sensitivity UNAFold:
0.620
RNAsubopt:
0.612
Positive Predictive Value UNAFold:
0.578
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 7.04732813174e-08
|
41
HotKnots vs RNAsubopt
Matthews Correlation Coefficient HotKnots:
0.588
RNAsubopt:
0.581
Sensitivity HotKnots:
0.627
RNAsubopt:
0.612
Positive Predictive Value HotKnots:
0.558
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 1.22032703654e-06
|
41
RNAshapes vs RNAsubopt
Matthews Correlation Coefficient RNAshapes:
0.585
RNAsubopt:
0.581
Sensitivity RNAshapes:
0.606
RNAsubopt:
0.612
Positive Predictive Value RNAshapes:
0.573
RNAsubopt:
0.560
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.0173545140323
|
41
RNAsubopt vs RNAfold
Matthews Correlation Coefficient RNAsubopt:
0.581
RNAfold:
0.578
Sensitivity RNAsubopt:
0.612
RNAfold:
0.607
Positive Predictive Value RNAsubopt:
0.560
RNAfold:
0.558
Number of pairs reference - predicted secondary structure: 41
Wilcoxon single-rank test P-value: 0.00165937258828
|
26
RNAsubopt vs Afold
Matthews Correlation Coefficient RNAsubopt:
0.569
Afold:
0.543
Sensitivity RNAsubopt:
0.603
Afold:
0.581
Positive Predictive Value RNAsubopt:
0.544
Afold:
0.514
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
RSpredict(20) vs RNAsubopt
Matthews Correlation Coefficient RSpredict(20):
0.585
RNAsubopt:
0.564
Sensitivity RSpredict(20):
0.534
RNAsubopt:
0.596
Positive Predictive Value RSpredict(20):
0.649
RNAsubopt:
0.542
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 0.000125008035357
|
10
Multilign(seed) vs RNAsubopt
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAsubopt:
0.630
Sensitivity Multilign(seed):
0.608
RNAsubopt:
0.642
Positive Predictive Value Multilign(seed):
0.721
RNAsubopt:
0.628
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.64079570066e-08
|
|
+
RNAsubopt vs Fold
Matthews Correlation Coefficient RNAsubopt:
0.571
Fold:
0.532
Sensitivity RNAsubopt:
0.612
Fold:
0.567
Positive Predictive Value RNAsubopt:
0.539
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAsubopt vs Vsfold4
Matthews Correlation Coefficient RNAsubopt:
0.579
Vsfold4:
0.553
Sensitivity RNAsubopt:
0.609
Vsfold4:
0.549
Positive Predictive Value RNAsubopt:
0.557
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
RNAsubopt vs RNASampler(seed)
Matthews Correlation Coefficient RNAsubopt:
0.564
RNASampler(seed):
0.563
Sensitivity RNAsubopt:
0.608
RNASampler(seed):
0.472
Positive Predictive Value RNAsubopt:
0.530
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.424373435549
|
=
Multilign(20) vs RNAsubopt
Matthews Correlation Coefficient Multilign(20):
0.517
RNAsubopt:
0.515
Sensitivity Multilign(20):
0.530
RNAsubopt:
0.561
Positive Predictive Value Multilign(20):
0.515
RNAsubopt:
0.483
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.436769378506
|
+
RNAsubopt vs Mastr(20)
Matthews Correlation Coefficient RNAsubopt:
0.564
Mastr(20):
0.508
Sensitivity RNAsubopt:
0.596
Mastr(20):
0.329
Positive Predictive Value RNAsubopt:
0.542
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.50294594097e-08
|
+
RNAsubopt vs Murlet(seed)
Matthews Correlation Coefficient RNAsubopt:
0.639
Murlet(seed):
0.534
Sensitivity RNAsubopt:
0.657
Murlet(seed):
0.349
Positive Predictive Value RNAsubopt:
0.630
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAsubopt vs Vsfold5
Matthews Correlation Coefficient RNAsubopt:
0.579
Vsfold5:
0.523
Sensitivity RNAsubopt:
0.608
Vsfold5:
0.527
Positive Predictive Value RNAsubopt:
0.558
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
=
Alterna vs RNAsubopt
Matthews Correlation Coefficient Alterna:
0.647
RNAsubopt:
0.645
Sensitivity Alterna:
0.636
RNAsubopt:
0.633
Positive Predictive Value Alterna:
0.674
RNAsubopt:
0.673
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0265004568535
|
+
RNAsubopt vs RDfolder
Matthews Correlation Coefficient RNAsubopt:
0.640
RDfolder:
0.569
Sensitivity RNAsubopt:
0.635
RDfolder:
0.510
Positive Predictive Value RNAsubopt:
0.660
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAsubopt vs MCFold
Matthews Correlation Coefficient RNAsubopt:
0.547
MCFold:
0.465
Sensitivity RNAsubopt:
0.571
MCFold:
0.510
Positive Predictive Value RNAsubopt:
0.536
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
RNAsubopt vs RNAwolf
Matthews Correlation Coefficient RNAsubopt:
0.540
RNAwolf:
0.449
Sensitivity RNAsubopt:
0.571
RNAwolf:
0.461
Positive Predictive Value RNAsubopt:
0.522
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
RNAsubopt vs RSpredict(seed)
Matthews Correlation Coefficient RNAsubopt:
0.573
RSpredict(seed):
0.292
Sensitivity RNAsubopt:
0.610
RSpredict(seed):
0.158
Positive Predictive Value RNAsubopt:
0.546
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAsubopt vs Carnac(seed)
Matthews Correlation Coefficient RNAsubopt:
0.639
Carnac(seed):
0.200
Sensitivity RNAsubopt:
0.657
Carnac(seed):
0.040
Positive Predictive Value RNAsubopt:
0.630
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
RNAsubopt vs NanoFolder
Matthews Correlation Coefficient RNAsubopt:
0.479
NanoFolder:
0.406
Sensitivity RNAsubopt:
0.524
NanoFolder:
0.516
Positive Predictive Value RNAsubopt:
0.450
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.06866544104e-08
|
+
RNAsubopt vs PPfold(seed)
Matthews Correlation Coefficient RNAsubopt:
0.558
PPfold(seed):
0.202
Sensitivity RNAsubopt:
0.590
PPfold(seed):
0.066
Positive Predictive Value RNAsubopt:
0.537
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.43573297697e-08
|
?
CMfinder(seed) vs RNAsubopt
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAsubopt:
N/A
Sensitivity CMfinder(seed):
N/A
RNAsubopt:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAsubopt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAsubopt vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAsubopt:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAsubopt:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAsubopt:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNAsubopt vs DAFS(20)
Matthews Correlation Coefficient RNAsubopt:
N/A
DAFS(20):
N/A
Sensitivity RNAsubopt:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAsubopt:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAsubopt vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNAsubopt
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAsubopt:
0.423
Sensitivity CMfinder(20):
0.500
RNAsubopt:
0.500
Positive Predictive Value CMfinder(20):
0.681
RNAsubopt:
0.368
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RNAsubopt
Matthews Correlation Coefficient CRWrnafold:
0.502
RNAsubopt:
0.460
Sensitivity CRWrnafold:
0.516
RNAsubopt:
0.478
Positive Predictive Value CRWrnafold:
0.503
RNAsubopt:
0.458
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs RNAsubopt
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAsubopt:
N/A
Sensitivity DAFS(seed):
N/A
RNAsubopt:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAsubopt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAsubopt vs Mastr(seed)
Matthews Correlation Coefficient RNAsubopt:
0.573
Mastr(seed):
0.036
Sensitivity RNAsubopt:
0.610
Mastr(seed):
0.004
Positive Predictive Value RNAsubopt:
0.546
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
Fold |
23
CentroidAlifold(seed) vs Fold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
Fold:
0.540
Sensitivity CentroidAlifold(seed):
0.679
Fold:
0.574
Positive Predictive Value CentroidAlifold(seed):
0.899
Fold:
0.511
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
16
CentroidAlifold(20) vs Fold
Matthews Correlation Coefficient CentroidAlifold(20):
0.730
Fold:
0.526
Sensitivity CentroidAlifold(20):
0.611
Fold:
0.562
Positive Predictive Value CentroidAlifold(20):
0.876
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
16
PETfold_pre2.0(seed) vs Fold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
Fold:
0.517
Sensitivity PETfold_pre2.0(seed):
0.802
Fold:
0.544
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Fold:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
21
RNAalifold(seed) vs Fold
Matthews Correlation Coefficient RNAalifold(seed):
0.721
Fold:
0.542
Sensitivity RNAalifold(seed):
0.600
Fold:
0.575
Positive Predictive Value RNAalifold(seed):
0.868
Fold:
0.512
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
16
RNAalifold(20) vs Fold
Matthews Correlation Coefficient RNAalifold(20):
0.683
Fold:
0.526
Sensitivity RNAalifold(20):
0.603
Fold:
0.562
Positive Predictive Value RNAalifold(20):
0.779
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.89169006118e-08
|
22
MXScarna(seed) vs Fold
Matthews Correlation Coefficient MXScarna(seed):
0.720
Fold:
0.542
Sensitivity MXScarna(seed):
0.682
Fold:
0.574
Positive Predictive Value MXScarna(seed):
0.760
Fold:
0.512
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
32
CentroidFold vs Fold
Matthews Correlation Coefficient CentroidFold:
0.583
Fold:
0.490
Sensitivity CentroidFold:
0.566
Fold:
0.523
Positive Predictive Value CentroidFold:
0.602
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs Fold
Matthews Correlation Coefficient PPfold(20):
0.668
Fold:
0.414
Sensitivity PPfold(20):
0.614
Fold:
0.456
Positive Predictive Value PPfold(20):
0.733
Fold:
0.388
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
12
TurboFold(20) vs Fold
Matthews Correlation Coefficient TurboFold(20):
0.636
Fold:
0.414
Sensitivity TurboFold(20):
0.629
Fold:
0.456
Positive Predictive Value TurboFold(20):
0.649
Fold:
0.388
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
16
RNASampler(20) vs Fold
Matthews Correlation Coefficient RNASampler(20):
0.631
Fold:
0.526
Sensitivity RNASampler(20):
0.562
Fold:
0.562
Positive Predictive Value RNASampler(20):
0.714
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
16
MXScarna(20) vs Fold
Matthews Correlation Coefficient MXScarna(20):
0.639
Fold:
0.526
Sensitivity MXScarna(20):
0.603
Fold:
0.562
Positive Predictive Value MXScarna(20):
0.682
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.91763127434e-08
|
22
ContextFold vs Fold
Matthews Correlation Coefficient ContextFold:
0.596
Fold:
0.446
Sensitivity ContextFold:
0.588
Fold:
0.476
Positive Predictive Value ContextFold:
0.604
Fold:
0.418
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
24
IPknot vs Fold
Matthews Correlation Coefficient IPknot:
0.600
Fold:
0.459
Sensitivity IPknot:
0.560
Fold:
0.489
Positive Predictive Value IPknot:
0.644
Fold:
0.433
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
32
Contrafold vs Fold
Matthews Correlation Coefficient Contrafold:
0.563
Fold:
0.490
Sensitivity Contrafold:
0.580
Fold:
0.523
Positive Predictive Value Contrafold:
0.547
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
16
Carnac(20) vs Fold
Matthews Correlation Coefficient Carnac(20):
0.583
Fold:
0.526
Sensitivity Carnac(20):
0.391
Fold:
0.562
Positive Predictive Value Carnac(20):
0.874
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
16
Murlet(20) vs Fold
Matthews Correlation Coefficient Murlet(20):
0.579
Fold:
0.526
Sensitivity Murlet(20):
0.490
Fold:
0.562
Positive Predictive Value Murlet(20):
0.690
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
10
PETfold_pre2.0(20) vs Fold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Fold:
0.334
Sensitivity PETfold_pre2.0(20):
0.597
Fold:
0.379
Positive Predictive Value PETfold_pre2.0(20):
0.654
Fold:
0.306
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.05024866538e-09
|
32
Sfold vs Fold
Matthews Correlation Coefficient Sfold:
0.533
Fold:
0.490
Sensitivity Sfold:
0.539
Fold:
0.523
Positive Predictive Value Sfold:
0.529
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
28
Pknots vs Fold
Matthews Correlation Coefficient Pknots:
0.626
Fold:
0.554
Sensitivity Pknots:
0.663
Fold:
0.579
Positive Predictive Value Pknots:
0.601
Fold:
0.540
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
32
MaxExpect vs Fold
Matthews Correlation Coefficient MaxExpect:
0.535
Fold:
0.490
Sensitivity MaxExpect:
0.555
Fold:
0.523
Positive Predictive Value MaxExpect:
0.518
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
TurboFold(seed) vs Fold
Matthews Correlation Coefficient TurboFold(seed):
0.610
Fold:
0.484
Sensitivity TurboFold(seed):
0.598
Fold:
0.514
Positive Predictive Value TurboFold(seed):
0.630
Fold:
0.468
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
31
PknotsRG vs Fold
Matthews Correlation Coefficient PknotsRG:
0.515
Fold:
0.467
Sensitivity PknotsRG:
0.560
Fold:
0.503
Positive Predictive Value PknotsRG:
0.476
Fold:
0.436
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
19
Cylofold vs Fold
Matthews Correlation Coefficient Cylofold:
0.669
Fold:
0.588
Sensitivity Cylofold:
0.648
Fold:
0.595
Positive Predictive Value Cylofold:
0.700
Fold:
0.594
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.60448791174e-08
|
19
CentroidHomfold‑LAST vs Fold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Fold:
0.462
Sensitivity CentroidHomfold‑LAST:
0.565
Fold:
0.484
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Fold:
0.456
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
20
RNASLOpt vs Fold
Matthews Correlation Coefficient RNASLOpt:
0.558
Fold:
0.444
Sensitivity RNASLOpt:
0.555
Fold:
0.474
Positive Predictive Value RNASLOpt:
0.572
Fold:
0.428
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
32
Fold vs McQFold
Matthews Correlation Coefficient Fold:
0.490
McQFold:
0.482
Sensitivity Fold:
0.523
McQFold:
0.503
Positive Predictive Value Fold:
0.460
McQFold:
0.464
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 7.04732813174e-08
|
31
ProbKnot vs Fold
Matthews Correlation Coefficient ProbKnot:
0.524
Fold:
0.482
Sensitivity ProbKnot:
0.554
Fold:
0.516
Positive Predictive Value ProbKnot:
0.497
Fold:
0.453
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
32
UNAFold vs Fold
Matthews Correlation Coefficient UNAFold:
0.515
Fold:
0.490
Sensitivity UNAFold:
0.546
Fold:
0.523
Positive Predictive Value UNAFold:
0.488
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
30
HotKnots vs Fold
Matthews Correlation Coefficient HotKnots:
0.560
Fold:
0.532
Sensitivity HotKnots:
0.611
Fold:
0.567
Positive Predictive Value HotKnots:
0.520
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
30
RNAshapes vs Fold
Matthews Correlation Coefficient RNAshapes:
0.557
Fold:
0.532
Sensitivity RNAshapes:
0.587
Fold:
0.567
Positive Predictive Value RNAshapes:
0.535
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
32
RNAfold vs Fold
Matthews Correlation Coefficient RNAfold:
0.506
Fold:
0.490
Sensitivity RNAfold:
0.540
Fold:
0.523
Positive Predictive Value RNAfold:
0.476
Fold:
0.460
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
17
Afold vs Fold
Matthews Correlation Coefficient Afold:
0.435
Fold:
0.412
Sensitivity Afold:
0.481
Fold:
0.450
Positive Predictive Value Afold:
0.396
Fold:
0.378
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
16
RSpredict(20) vs Fold
Matthews Correlation Coefficient RSpredict(20):
0.529
Fold:
0.526
Sensitivity RSpredict(20):
0.488
Fold:
0.562
Positive Predictive Value RSpredict(20):
0.581
Fold:
0.499
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 0.00262814042589
|
10
Multilign(seed) vs Fold
Matthews Correlation Coefficient Multilign(seed):
0.658
Fold:
0.598
Sensitivity Multilign(seed):
0.608
Fold:
0.612
Positive Predictive Value Multilign(seed):
0.721
Fold:
0.596
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.45186852942e-09
|
30
RNAsubopt vs Fold
Matthews Correlation Coefficient RNAsubopt:
0.571
Fold:
0.532
Sensitivity RNAsubopt:
0.612
Fold:
0.567
Positive Predictive Value RNAsubopt:
0.539
Fold:
0.507
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
|
+
Fold vs Vsfold4
Matthews Correlation Coefficient Fold:
0.530
Vsfold4:
0.507
Sensitivity Fold:
0.563
Vsfold4:
0.513
Positive Predictive Value Fold:
0.506
Vsfold4:
0.508
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.92687381315e-08
|
-
RNASampler(seed) vs Fold
Matthews Correlation Coefficient RNASampler(seed):
0.501
Fold:
0.474
Sensitivity RNASampler(seed):
0.421
Fold:
0.528
Positive Predictive Value RNASampler(seed):
0.605
Fold:
0.435
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14531876181e-08
|
-
Multilign(20) vs Fold
Matthews Correlation Coefficient Multilign(20):
0.517
Fold:
0.435
Sensitivity Multilign(20):
0.530
Fold:
0.470
Positive Predictive Value Multilign(20):
0.515
Fold:
0.415
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.32883086441e-08
|
+
Fold vs Mastr(20)
Matthews Correlation Coefficient Fold:
0.526
Mastr(20):
0.409
Sensitivity Fold:
0.562
Mastr(20):
0.227
Positive Predictive Value Fold:
0.499
Mastr(20):
0.745
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.78993384543e-08
|
+
Fold vs Murlet(seed)
Matthews Correlation Coefficient Fold:
0.561
Murlet(seed):
0.503
Sensitivity Fold:
0.589
Murlet(seed):
0.316
Positive Predictive Value Fold:
0.544
Murlet(seed):
0.811
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
+
Fold vs Vsfold5
Matthews Correlation Coefficient Fold:
0.527
Vsfold5:
0.499
Sensitivity Fold:
0.559
Vsfold5:
0.514
Positive Predictive Value Fold:
0.504
Vsfold5:
0.493
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
Fold vs Alterna
Matthews Correlation Coefficient Fold:
0.589
Alterna:
0.560
Sensitivity Fold:
0.582
Alterna:
0.552
Positive Predictive Value Fold:
0.614
Alterna:
0.587
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Fold vs RDfolder
Matthews Correlation Coefficient Fold:
0.575
RDfolder:
0.510
Sensitivity Fold:
0.572
RDfolder:
0.455
Positive Predictive Value Fold:
0.595
RDfolder:
0.592
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 3.415269236e-08
|
+
Fold vs MCFold
Matthews Correlation Coefficient Fold:
0.449
MCFold:
0.446
Sensitivity Fold:
0.483
MCFold:
0.498
Positive Predictive Value Fold:
0.429
MCFold:
0.411
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 0.000918214104114
|
+
Fold vs RNAwolf
Matthews Correlation Coefficient Fold:
0.459
RNAwolf:
0.406
Sensitivity Fold:
0.489
RNAwolf:
0.415
Positive Predictive Value Fold:
0.433
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Fold vs RSpredict(seed)
Matthews Correlation Coefficient Fold:
0.540
RSpredict(seed):
0.497
Sensitivity Fold:
0.574
RSpredict(seed):
0.365
Positive Predictive Value Fold:
0.511
RSpredict(seed):
0.678
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
+
Fold vs Carnac(seed)
Matthews Correlation Coefficient Fold:
0.560
Carnac(seed):
0.521
Sensitivity Fold:
0.585
Carnac(seed):
0.291
Positive Predictive Value Fold:
0.538
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.57327336088e-08
|
+
Fold vs NanoFolder
Matthews Correlation Coefficient Fold:
0.433
NanoFolder:
0.406
Sensitivity Fold:
0.464
NanoFolder:
0.516
Positive Predictive Value Fold:
0.417
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00091553769281
|
+
Fold vs PPfold(seed)
Matthews Correlation Coefficient Fold:
0.506
PPfold(seed):
0.202
Sensitivity Fold:
0.534
PPfold(seed):
0.066
Positive Predictive Value Fold:
0.491
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
?
Fold vs CMfinder(seed)
Matthews Correlation Coefficient Fold:
N/A
CMfinder(seed):
N/A
Sensitivity Fold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Fold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Fold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Fold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Fold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Fold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Fold vs DAFS(20)
Matthews Correlation Coefficient Fold:
N/A
DAFS(20):
N/A
Sensitivity Fold:
N/A
DAFS(20):
N/A
Positive Predictive Value Fold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Fold vs PETfold_2.0(20)
Matthews Correlation Coefficient Fold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Fold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Fold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Fold
Matthews Correlation Coefficient CMfinder(20):
0.580
Fold:
0.316
Sensitivity CMfinder(20):
0.500
Fold:
0.367
Positive Predictive Value CMfinder(20):
0.681
Fold:
0.283
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Fold
Matthews Correlation Coefficient CRWrnafold:
0.502
Fold:
0.409
Sensitivity CRWrnafold:
0.516
Fold:
0.421
Positive Predictive Value CRWrnafold:
0.503
Fold:
0.414
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Fold vs DAFS(seed)
Matthews Correlation Coefficient Fold:
N/A
DAFS(seed):
N/A
Sensitivity Fold:
N/A
DAFS(seed):
N/A
Positive Predictive Value Fold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Fold vs Mastr(seed)
Matthews Correlation Coefficient Fold:
0.529
Mastr(seed):
0.041
Sensitivity Fold:
0.569
Mastr(seed):
0.005
Positive Predictive Value Fold:
0.499
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
Vsfold4 |
26
CentroidAlifold(seed) vs Vsfold4
Matthews Correlation Coefficient CentroidAlifold(seed):
0.720
Vsfold4:
0.542
Sensitivity CentroidAlifold(seed):
0.579
Vsfold4:
0.545
Positive Predictive Value CentroidAlifold(seed):
0.898
Vsfold4:
0.546
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
20
CentroidAlifold(20) vs Vsfold4
Matthews Correlation Coefficient CentroidAlifold(20):
0.786
Vsfold4:
0.537
Sensitivity CentroidAlifold(20):
0.683
Vsfold4:
0.531
Positive Predictive Value CentroidAlifold(20):
0.908
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
12
PETfold_pre2.0(seed) vs Vsfold4
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.786
Vsfold4:
0.538
Sensitivity PETfold_pre2.0(seed):
0.726
Vsfold4:
0.536
Positive Predictive Value PETfold_pre2.0(seed):
0.855
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
21
RNAalifold(seed) vs Vsfold4
Matthews Correlation Coefficient RNAalifold(seed):
0.637
Vsfold4:
0.519
Sensitivity RNAalifold(seed):
0.473
Vsfold4:
0.522
Positive Predictive Value RNAalifold(seed):
0.863
Vsfold4:
0.523
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
20
RNAalifold(20) vs Vsfold4
Matthews Correlation Coefficient RNAalifold(20):
0.747
Vsfold4:
0.537
Sensitivity RNAalifold(20):
0.667
Vsfold4:
0.531
Positive Predictive Value RNAalifold(20):
0.842
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
25
MXScarna(seed) vs Vsfold4
Matthews Correlation Coefficient MXScarna(seed):
0.687
Vsfold4:
0.544
Sensitivity MXScarna(seed):
0.636
Vsfold4:
0.546
Positive Predictive Value MXScarna(seed):
0.747
Vsfold4:
0.549
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
35
CentroidFold vs Vsfold4
Matthews Correlation Coefficient CentroidFold:
0.680
Vsfold4:
0.547
Sensitivity CentroidFold:
0.677
Vsfold4:
0.545
Positive Predictive Value CentroidFold:
0.689
Vsfold4:
0.557
Number of pairs reference - predicted secondary structure: 35
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
PPfold(20) vs Vsfold4
Matthews Correlation Coefficient PPfold(20):
0.700
Vsfold4:
0.526
Sensitivity PPfold(20):
0.652
Vsfold4:
0.535
Positive Predictive Value PPfold(20):
0.758
Vsfold4:
0.528
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
11
TurboFold(20) vs Vsfold4
Matthews Correlation Coefficient TurboFold(20):
0.653
Vsfold4:
0.526
Sensitivity TurboFold(20):
0.652
Vsfold4:
0.535
Positive Predictive Value TurboFold(20):
0.661
Vsfold4:
0.528
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
20
RNASampler(20) vs Vsfold4
Matthews Correlation Coefficient RNASampler(20):
0.710
Vsfold4:
0.537
Sensitivity RNASampler(20):
0.638
Vsfold4:
0.531
Positive Predictive Value RNASampler(20):
0.796
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
20
MXScarna(20) vs Vsfold4
Matthews Correlation Coefficient MXScarna(20):
0.694
Vsfold4:
0.537
Sensitivity MXScarna(20):
0.658
Vsfold4:
0.531
Positive Predictive Value MXScarna(20):
0.738
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
17
ContextFold vs Vsfold4
Matthews Correlation Coefficient ContextFold:
0.625
Vsfold4:
0.501
Sensitivity ContextFold:
0.601
Vsfold4:
0.495
Positive Predictive Value ContextFold:
0.659
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
19
IPknot vs Vsfold4
Matthews Correlation Coefficient IPknot:
0.608
Vsfold4:
0.504
Sensitivity IPknot:
0.596
Vsfold4:
0.497
Positive Predictive Value IPknot:
0.630
Vsfold4:
0.524
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
38
Contrafold vs Vsfold4
Matthews Correlation Coefficient Contrafold:
0.645
Vsfold4:
0.553
Sensitivity Contrafold:
0.665
Vsfold4:
0.549
Positive Predictive Value Contrafold:
0.632
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
20
Carnac(20) vs Vsfold4
Matthews Correlation Coefficient Carnac(20):
0.653
Vsfold4:
0.537
Sensitivity Carnac(20):
0.469
Vsfold4:
0.531
Positive Predictive Value Carnac(20):
0.915
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
Murlet(20) vs Vsfold4
Matthews Correlation Coefficient Murlet(20):
0.637
Vsfold4:
0.537
Sensitivity Murlet(20):
0.538
Vsfold4:
0.531
Positive Predictive Value Murlet(20):
0.760
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
9
PETfold_pre2.0(20) vs Vsfold4
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Vsfold4:
0.527
Sensitivity PETfold_pre2.0(20):
0.655
Vsfold4:
0.542
Positive Predictive Value PETfold_pre2.0(20):
0.707
Vsfold4:
0.522
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
38
Sfold vs Vsfold4
Matthews Correlation Coefficient Sfold:
0.609
Vsfold4:
0.553
Sensitivity Sfold:
0.601
Vsfold4:
0.549
Positive Predictive Value Sfold:
0.624
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
36
Pknots vs Vsfold4
Matthews Correlation Coefficient Pknots:
0.666
Vsfold4:
0.600
Sensitivity Pknots:
0.689
Vsfold4:
0.581
Positive Predictive Value Pknots:
0.653
Vsfold4:
0.631
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
33
MaxExpect vs Vsfold4
Matthews Correlation Coefficient MaxExpect:
0.593
Vsfold4:
0.523
Sensitivity MaxExpect:
0.611
Vsfold4:
0.522
Positive Predictive Value MaxExpect:
0.582
Vsfold4:
0.532
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
10
TurboFold(seed) vs Vsfold4
Matthews Correlation Coefficient TurboFold(seed):
0.550
Vsfold4:
0.460
Sensitivity TurboFold(seed):
0.548
Vsfold4:
0.457
Positive Predictive Value TurboFold(seed):
0.562
Vsfold4:
0.475
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 4.09606974296e-09
|
38
PknotsRG vs Vsfold4
Matthews Correlation Coefficient PknotsRG:
0.598
Vsfold4:
0.553
Sensitivity PknotsRG:
0.636
Vsfold4:
0.549
Positive Predictive Value PknotsRG:
0.570
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
18
Cylofold vs Vsfold4
Matthews Correlation Coefficient Cylofold:
0.693
Vsfold4:
0.598
Sensitivity Cylofold:
0.681
Vsfold4:
0.577
Positive Predictive Value Cylofold:
0.716
Vsfold4:
0.632
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
18
CentroidHomfold‑LAST vs Vsfold4
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.598
Vsfold4:
0.506
Sensitivity CentroidHomfold‑LAST:
0.572
Vsfold4:
0.499
Positive Predictive Value CentroidHomfold‑LAST:
0.636
Vsfold4:
0.527
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
17
RNASLOpt vs Vsfold4
Matthews Correlation Coefficient RNASLOpt:
0.575
Vsfold4:
0.501
Sensitivity RNASLOpt:
0.573
Vsfold4:
0.495
Positive Predictive Value RNASLOpt:
0.588
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.30280588002e-08
|
38
McQFold vs Vsfold4
Matthews Correlation Coefficient McQFold:
0.623
Vsfold4:
0.553
Sensitivity McQFold:
0.644
Vsfold4:
0.549
Positive Predictive Value McQFold:
0.609
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
26
ProbKnot vs Vsfold4
Matthews Correlation Coefficient ProbKnot:
0.546
Vsfold4:
0.486
Sensitivity ProbKnot:
0.590
Vsfold4:
0.493
Positive Predictive Value ProbKnot:
0.511
Vsfold4:
0.487
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
38
UNAFold vs Vsfold4
Matthews Correlation Coefficient UNAFold:
0.596
Vsfold4:
0.553
Sensitivity UNAFold:
0.621
Vsfold4:
0.549
Positive Predictive Value UNAFold:
0.580
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
38
HotKnots vs Vsfold4
Matthews Correlation Coefficient HotKnots:
0.598
Vsfold4:
0.553
Sensitivity HotKnots:
0.637
Vsfold4:
0.549
Positive Predictive Value HotKnots:
0.569
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
38
RNAshapes vs Vsfold4
Matthews Correlation Coefficient RNAshapes:
0.584
Vsfold4:
0.553
Sensitivity RNAshapes:
0.603
Vsfold4:
0.549
Positive Predictive Value RNAshapes:
0.572
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
38
RNAfold vs Vsfold4
Matthews Correlation Coefficient RNAfold:
0.575
Vsfold4:
0.553
Sensitivity RNAfold:
0.604
Vsfold4:
0.549
Positive Predictive Value RNAfold:
0.555
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 5.21776328505e-08
|
26
Afold vs Vsfold4
Matthews Correlation Coefficient Afold:
0.543
Vsfold4:
0.535
Sensitivity Afold:
0.581
Vsfold4:
0.535
Positive Predictive Value Afold:
0.514
Vsfold4:
0.542
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 9.09278102266e-06
|
20
RSpredict(20) vs Vsfold4
Matthews Correlation Coefficient RSpredict(20):
0.598
Vsfold4:
0.537
Sensitivity RSpredict(20):
0.545
Vsfold4:
0.531
Positive Predictive Value RSpredict(20):
0.663
Vsfold4:
0.551
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.50294594097e-08
|
7
Multilign(seed) vs Vsfold4
Matthews Correlation Coefficient Multilign(seed):
0.678
Vsfold4:
0.489
Sensitivity Multilign(seed):
0.634
Vsfold4:
0.477
Positive Predictive Value Multilign(seed):
0.736
Vsfold4:
0.519
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
38
RNAsubopt vs Vsfold4
Matthews Correlation Coefficient RNAsubopt:
0.579
Vsfold4:
0.553
Sensitivity RNAsubopt:
0.609
Vsfold4:
0.549
Positive Predictive Value RNAsubopt:
0.557
Vsfold4:
0.565
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
27
Fold vs Vsfold4
Matthews Correlation Coefficient Fold:
0.530
Vsfold4:
0.507
Sensitivity Fold:
0.563
Vsfold4:
0.513
Positive Predictive Value Fold:
0.506
Vsfold4:
0.508
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.92687381315e-08
|
|
-
RNASampler(seed) vs Vsfold4
Matthews Correlation Coefficient RNASampler(seed):
0.581
Vsfold4:
0.514
Sensitivity RNASampler(seed):
0.490
Vsfold4:
0.518
Positive Predictive Value RNASampler(seed):
0.696
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
=
Vsfold4 vs Multilign(20)
Matthews Correlation Coefficient Vsfold4:
0.526
Multilign(20):
0.517
Sensitivity Vsfold4:
0.535
Multilign(20):
0.530
Positive Predictive Value Vsfold4:
0.528
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.00216473880436
|
=
Vsfold4 vs Mastr(20)
Matthews Correlation Coefficient Vsfold4:
0.537
Mastr(20):
0.521
Sensitivity Vsfold4:
0.531
Mastr(20):
0.346
Positive Predictive Value Vsfold4:
0.551
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.0115067390742
|
+
Vsfold4 vs Murlet(seed)
Matthews Correlation Coefficient Vsfold4:
0.585
Murlet(seed):
0.533
Sensitivity Vsfold4:
0.567
Murlet(seed):
0.352
Positive Predictive Value Vsfold4:
0.614
Murlet(seed):
0.816
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
+
Vsfold4 vs Vsfold5
Matthews Correlation Coefficient Vsfold4:
0.553
Vsfold5:
0.533
Sensitivity Vsfold4:
0.549
Vsfold5:
0.539
Positive Predictive Value Vsfold4:
0.565
Vsfold5:
0.536
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
+
Vsfold4 vs Alterna
Matthews Correlation Coefficient Vsfold4:
0.660
Alterna:
0.647
Sensitivity Vsfold4:
0.624
Alterna:
0.636
Positive Predictive Value Vsfold4:
0.713
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 7.28379249865e-05
|
+
Vsfold4 vs RDfolder
Matthews Correlation Coefficient Vsfold4:
0.654
RDfolder:
0.569
Sensitivity Vsfold4:
0.620
RDfolder:
0.510
Positive Predictive Value Vsfold4:
0.705
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Vsfold4 vs MCFold
Matthews Correlation Coefficient Vsfold4:
0.567
MCFold:
0.489
Sensitivity Vsfold4:
0.552
MCFold:
0.536
Positive Predictive Value Vsfold4:
0.594
MCFold:
0.460
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Vsfold4 vs RNAwolf
Matthews Correlation Coefficient Vsfold4:
0.504
RNAwolf:
0.488
Sensitivity Vsfold4:
0.497
RNAwolf:
0.497
Positive Predictive Value Vsfold4:
0.524
RNAwolf:
0.492
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 6.52442735156e-07
|
+
Vsfold4 vs RSpredict(seed)
Matthews Correlation Coefficient Vsfold4:
0.542
RSpredict(seed):
0.293
Sensitivity Vsfold4:
0.545
RSpredict(seed):
0.159
Positive Predictive Value Vsfold4:
0.546
RSpredict(seed):
0.550
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
Vsfold4 vs Carnac(seed)
Matthews Correlation Coefficient Vsfold4:
0.585
Carnac(seed):
0.218
Sensitivity Vsfold4:
0.567
Carnac(seed):
0.048
Positive Predictive Value Vsfold4:
0.614
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
+
Vsfold4 vs NanoFolder
Matthews Correlation Coefficient Vsfold4:
0.440
NanoFolder:
0.406
Sensitivity Vsfold4:
0.440
NanoFolder:
0.516
Positive Predictive Value Vsfold4:
0.453
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 8.58621006346e-05
|
+
Vsfold4 vs PPfold(seed)
Matthews Correlation Coefficient Vsfold4:
0.535
PPfold(seed):
0.230
Sensitivity Vsfold4:
0.531
PPfold(seed):
0.079
Positive Predictive Value Vsfold4:
0.551
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
?
Vsfold4 vs CMfinder(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
CMfinder(seed):
N/A
Sensitivity Vsfold4:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold4 vs PETfold_2.0(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold4 vs DAFS(20)
Matthews Correlation Coefficient Vsfold4:
N/A
DAFS(20):
N/A
Sensitivity Vsfold4:
N/A
DAFS(20):
N/A
Positive Predictive Value Vsfold4:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold4 vs PETfold_2.0(20)
Matthews Correlation Coefficient Vsfold4:
N/A
PETfold_2.0(20):
N/A
Sensitivity Vsfold4:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Vsfold4:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Vsfold4
Matthews Correlation Coefficient CMfinder(20):
0.580
Vsfold4:
0.506
Sensitivity CMfinder(20):
0.500
Vsfold4:
0.551
Positive Predictive Value CMfinder(20):
0.681
Vsfold4:
0.474
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Vsfold4
Matthews Correlation Coefficient CRWrnafold:
0.502
Vsfold4:
0.417
Sensitivity CRWrnafold:
0.516
Vsfold4:
0.409
Positive Predictive Value CRWrnafold:
0.503
Vsfold4:
0.442
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Vsfold4 vs DAFS(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
DAFS(seed):
N/A
Sensitivity Vsfold4:
N/A
DAFS(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Vsfold4 vs Mastr(seed)
Matthews Correlation Coefficient Vsfold4:
0.542
Mastr(seed):
0.039
Sensitivity Vsfold4:
0.545
Mastr(seed):
0.004
Positive Predictive Value Vsfold4:
0.546
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
RNASampler(seed) |
12
CentroidAlifold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.736
RNASampler(seed):
0.563
Sensitivity CentroidAlifold(seed):
0.584
RNASampler(seed):
0.472
Positive Predictive Value CentroidAlifold(seed):
0.933
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
8
CentroidAlifold(20) vs RNASampler(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.622
RNASampler(seed):
0.576
Sensitivity CentroidAlifold(20):
0.497
RNASampler(seed):
0.525
Positive Predictive Value CentroidAlifold(20):
0.783
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
PETfold_pre2.0(seed) vs RNASampler(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.737
RNASampler(seed):
0.390
Sensitivity PETfold_pre2.0(seed):
0.652
RNASampler(seed):
0.323
Positive Predictive Value PETfold_pre2.0(seed):
0.837
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
RNAalifold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.594
RNASampler(seed):
0.563
Sensitivity RNAalifold(seed):
0.423
RNASampler(seed):
0.472
Positive Predictive Value RNAalifold(seed):
0.840
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
8
RNAalifold(20) vs RNASampler(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.576
RNASampler(seed):
0.576
Sensitivity RNAalifold(20):
0.558
RNASampler(seed):
0.525
Positive Predictive Value RNAalifold(20):
0.601
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
12
MXScarna(seed) vs RNASampler(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.577
RNASampler(seed):
0.563
Sensitivity MXScarna(seed):
0.514
RNASampler(seed):
0.472
Positive Predictive Value MXScarna(seed):
0.656
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.06545072292e-07
|
12
CentroidFold vs RNASampler(seed)
Matthews Correlation Coefficient CentroidFold:
0.647
RNASampler(seed):
0.563
Sensitivity CentroidFold:
0.622
RNASampler(seed):
0.472
Positive Predictive Value CentroidFold:
0.679
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.79203144115e-08
|
6
RNASampler(seed) vs PPfold(20)
Matthews Correlation Coefficient RNASampler(seed):
0.526
PPfold(20):
0.521
Sensitivity RNASampler(seed):
0.478
PPfold(20):
0.478
Positive Predictive Value RNASampler(seed):
0.586
PPfold(20):
0.575
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
RNASampler(seed) vs TurboFold(20)
Matthews Correlation Coefficient RNASampler(seed):
0.526
TurboFold(20):
0.515
Sensitivity RNASampler(seed):
0.478
TurboFold(20):
0.537
Positive Predictive Value RNASampler(seed):
0.586
TurboFold(20):
0.500
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
RNASampler(seed) vs RNASampler(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
RNASampler(20):
0.554
Sensitivity RNASampler(seed):
0.525
RNASampler(20):
0.530
Positive Predictive Value RNASampler(seed):
0.638
RNASampler(20):
0.585
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
RNASampler(seed) vs MXScarna(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
MXScarna(20):
0.552
Sensitivity RNASampler(seed):
0.525
MXScarna(20):
0.536
Positive Predictive Value RNASampler(seed):
0.638
MXScarna(20):
0.574
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
ContextFold vs RNASampler(seed)
Matthews Correlation Coefficient ContextFold:
0.477
RNASampler(seed):
0.390
Sensitivity ContextFold:
0.475
RNASampler(seed):
0.323
Positive Predictive Value ContextFold:
0.487
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
9
IPknot vs RNASampler(seed)
Matthews Correlation Coefficient IPknot:
0.598
RNASampler(seed):
0.497
Sensitivity IPknot:
0.583
RNASampler(seed):
0.412
Positive Predictive Value IPknot:
0.621
RNASampler(seed):
0.608
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
12
Contrafold vs RNASampler(seed)
Matthews Correlation Coefficient Contrafold:
0.612
RNASampler(seed):
0.563
Sensitivity Contrafold:
0.626
RNASampler(seed):
0.472
Positive Predictive Value Contrafold:
0.605
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
8
Carnac(20) vs RNASampler(seed)
Matthews Correlation Coefficient Carnac(20):
0.644
RNASampler(seed):
0.576
Sensitivity Carnac(20):
0.448
RNASampler(seed):
0.525
Positive Predictive Value Carnac(20):
0.931
RNASampler(seed):
0.638
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
RNASampler(seed) vs Murlet(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
Murlet(20):
0.552
Sensitivity RNASampler(seed):
0.525
Murlet(20):
0.514
Positive Predictive Value RNASampler(seed):
0.638
Murlet(20):
0.600
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
4
RNASampler(seed) vs PETfold_pre2.0(20)
Matthews Correlation Coefficient RNASampler(seed):
0.367
PETfold_pre2.0(20):
0.316
Sensitivity RNASampler(seed):
0.349
PETfold_pre2.0(20):
0.313
Positive Predictive Value RNASampler(seed):
0.392
PETfold_pre2.0(20):
0.325
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
12
Sfold vs RNASampler(seed)
Matthews Correlation Coefficient Sfold:
0.610
RNASampler(seed):
0.563
Sensitivity Sfold:
0.601
RNASampler(seed):
0.472
Positive Predictive Value Sfold:
0.625
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
12
Pknots vs RNASampler(seed)
Matthews Correlation Coefficient Pknots:
0.594
RNASampler(seed):
0.563
Sensitivity Pknots:
0.661
RNASampler(seed):
0.472
Positive Predictive Value Pknots:
0.542
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.02976601485e-08
|
11
MaxExpect vs RNASampler(seed)
Matthews Correlation Coefficient MaxExpect:
0.561
RNASampler(seed):
0.540
Sensitivity MaxExpect:
0.578
RNASampler(seed):
0.457
Positive Predictive Value MaxExpect:
0.552
RNASampler(seed):
0.646
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.91187318367e-05
|
8
TurboFold(seed) vs RNASampler(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.501
RNASampler(seed):
0.488
Sensitivity TurboFold(seed):
0.517
RNASampler(seed):
0.421
Positive Predictive Value TurboFold(seed):
0.495
RNASampler(seed):
0.573
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
12
PknotsRG vs RNASampler(seed)
Matthews Correlation Coefficient PknotsRG:
0.584
RNASampler(seed):
0.563
Sensitivity PknotsRG:
0.633
RNASampler(seed):
0.472
Positive Predictive Value PknotsRG:
0.547
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.37162975768e-06
|
5
Cylofold vs RNASampler(seed)
Matthews Correlation Coefficient Cylofold:
0.614
RNASampler(seed):
0.591
Sensitivity Cylofold:
0.611
RNASampler(seed):
0.468
Positive Predictive Value Cylofold:
0.626
RNASampler(seed):
0.756
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
8
CentroidHomfold‑LAST vs RNASampler(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNASampler(seed):
0.513
Sensitivity CentroidHomfold‑LAST:
0.549
RNASampler(seed):
0.429
Positive Predictive Value CentroidHomfold‑LAST:
0.613
RNASampler(seed):
0.624
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
RNASLOpt vs RNASampler(seed)
Matthews Correlation Coefficient RNASLOpt:
0.489
RNASampler(seed):
0.390
Sensitivity RNASLOpt:
0.513
RNASampler(seed):
0.323
Positive Predictive Value RNASLOpt:
0.474
RNASampler(seed):
0.481
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
RNASampler(seed) vs McQFold
Matthews Correlation Coefficient RNASampler(seed):
0.563
McQFold:
0.562
Sensitivity RNASampler(seed):
0.472
McQFold:
0.601
Positive Predictive Value RNASampler(seed):
0.678
McQFold:
0.534
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.249670901929
|
10
ProbKnot vs RNASampler(seed)
Matthews Correlation Coefficient ProbKnot:
0.516
RNASampler(seed):
0.501
Sensitivity ProbKnot:
0.575
RNASampler(seed):
0.421
Positive Predictive Value ProbKnot:
0.470
RNASampler(seed):
0.605
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 0.000845354672286
|
12
RNASampler(seed) vs UNAFold
Matthews Correlation Coefficient RNASampler(seed):
0.563
UNAFold:
0.542
Sensitivity RNASampler(seed):
0.472
UNAFold:
0.577
Positive Predictive Value RNASampler(seed):
0.678
UNAFold:
0.517
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
12
RNASampler(seed) vs HotKnots
Matthews Correlation Coefficient RNASampler(seed):
0.563
HotKnots:
0.527
Sensitivity RNASampler(seed):
0.472
HotKnots:
0.587
Positive Predictive Value RNASampler(seed):
0.678
HotKnots:
0.481
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.36923717189e-08
|
12
RNAshapes vs RNASampler(seed)
Matthews Correlation Coefficient RNAshapes:
0.570
RNASampler(seed):
0.563
Sensitivity RNAshapes:
0.605
RNASampler(seed):
0.472
Positive Predictive Value RNAshapes:
0.546
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.000564395793884
|
12
RNAfold vs RNASampler(seed)
Matthews Correlation Coefficient RNAfold:
0.582
RNASampler(seed):
0.563
Sensitivity RNAfold:
0.622
RNASampler(seed):
0.472
Positive Predictive Value RNAfold:
0.551
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.47838274392e-05
|
8
Afold vs RNASampler(seed)
Matthews Correlation Coefficient Afold:
0.590
RNASampler(seed):
0.572
Sensitivity Afold:
0.622
RNASampler(seed):
0.492
Positive Predictive Value Afold:
0.569
RNASampler(seed):
0.674
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
RNASampler(seed) vs RSpredict(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
RSpredict(20):
0.518
Sensitivity RNASampler(seed):
0.525
RSpredict(20):
0.558
Positive Predictive Value RNASampler(seed):
0.638
RSpredict(20):
0.488
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
Multilign(seed) vs RNASampler(seed)
Matthews Correlation Coefficient Multilign(seed):
0.642
RNASampler(seed):
0.519
Sensitivity Multilign(seed):
0.599
RNASampler(seed):
0.407
Positive Predictive Value Multilign(seed):
0.696
RNASampler(seed):
0.673
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
RNAsubopt vs RNASampler(seed)
Matthews Correlation Coefficient RNAsubopt:
0.564
RNASampler(seed):
0.563
Sensitivity RNAsubopt:
0.608
RNASampler(seed):
0.472
Positive Predictive Value RNAsubopt:
0.530
RNASampler(seed):
0.678
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.424373435549
|
10
RNASampler(seed) vs Fold
Matthews Correlation Coefficient RNASampler(seed):
0.501
Fold:
0.474
Sensitivity RNASampler(seed):
0.421
Fold:
0.528
Positive Predictive Value RNASampler(seed):
0.605
Fold:
0.435
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14531876181e-08
|
11
RNASampler(seed) vs Vsfold4
Matthews Correlation Coefficient RNASampler(seed):
0.581
Vsfold4:
0.514
Sensitivity RNASampler(seed):
0.490
Vsfold4:
0.518
Positive Predictive Value RNASampler(seed):
0.696
Vsfold4:
0.520
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
|
?
RNASampler(seed) vs Multilign(20)
Matthews Correlation Coefficient RNASampler(seed):
0.558
Multilign(20):
0.471
Sensitivity RNASampler(seed):
0.523
Multilign(20):
0.523
Positive Predictive Value RNASampler(seed):
0.602
Multilign(20):
0.431
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs Mastr(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
Mastr(20):
0.520
Sensitivity RNASampler(seed):
0.525
Mastr(20):
0.315
Positive Predictive Value RNASampler(seed):
0.638
Mastr(20):
0.864
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(seed) vs Murlet(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Murlet(seed):
0.498
Sensitivity RNASampler(seed):
0.472
Murlet(seed):
0.322
Positive Predictive Value RNASampler(seed):
0.678
Murlet(seed):
0.780
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
+
RNASampler(seed) vs Vsfold5
Matthews Correlation Coefficient RNASampler(seed):
0.581
Vsfold5:
0.569
Sensitivity RNASampler(seed):
0.490
Vsfold5:
0.603
Positive Predictive Value RNASampler(seed):
0.696
Vsfold5:
0.546
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 5.83740878464e-05
|
?
Alterna vs RNASampler(seed)
Matthews Correlation Coefficient Alterna:
0.732
RNASampler(seed):
0.710
Sensitivity Alterna:
0.702
RNASampler(seed):
0.589
Positive Predictive Value Alterna:
0.777
RNASampler(seed):
0.869
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs RDfolder
Matthews Correlation Coefficient RNASampler(seed):
0.688
RDfolder:
0.515
Sensitivity RNASampler(seed):
0.541
RDfolder:
0.446
Positive Predictive Value RNASampler(seed):
0.885
RDfolder:
0.614
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(seed) vs MCFold
Matthews Correlation Coefficient RNASampler(seed):
0.562
MCFold:
0.449
Sensitivity RNASampler(seed):
0.486
MCFold:
0.514
Positive Predictive Value RNASampler(seed):
0.658
MCFold:
0.401
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
?
RNASampler(seed) vs RNAwolf
Matthews Correlation Coefficient RNASampler(seed):
0.497
RNAwolf:
0.424
Sensitivity RNASampler(seed):
0.412
RNAwolf:
0.464
Positive Predictive Value RNASampler(seed):
0.608
RNAwolf:
0.397
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RNASampler(seed) vs RSpredict(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
RSpredict(seed):
0.356
Sensitivity RNASampler(seed):
0.472
RSpredict(seed):
0.224
Positive Predictive Value RNASampler(seed):
0.678
RSpredict(seed):
0.577
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
+
RNASampler(seed) vs Carnac(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Carnac(seed):
0.282
Sensitivity RNASampler(seed):
0.472
Carnac(seed):
0.080
Positive Predictive Value RNASampler(seed):
0.678
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.24270395587e-08
|
?
RNASampler(seed) vs NanoFolder
Matthews Correlation Coefficient RNASampler(seed):
0.390
NanoFolder:
0.244
Sensitivity RNASampler(seed):
0.326
NanoFolder:
0.333
Positive Predictive Value RNASampler(seed):
0.477
NanoFolder:
0.191
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs PPfold(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.497
PPfold(seed):
0.277
Sensitivity RNASampler(seed):
0.412
PPfold(seed):
0.123
Positive Predictive Value RNASampler(seed):
0.608
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RNASampler(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(seed) vs DAFS(20)
Matthews Correlation Coefficient RNASampler(seed):
N/A
DAFS(20):
N/A
Sensitivity RNASampler(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RNASampler(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNASampler(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNASampler(seed)
Matthews Correlation Coefficient CMfinder(20):
0.342
RNASampler(seed):
0.340
Sensitivity CMfinder(20):
0.324
RNASampler(seed):
0.353
Positive Predictive Value CMfinder(20):
0.367
RNASampler(seed):
0.333
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs CRWrnafold
Matthews Correlation Coefficient RNASampler(seed):
0.423
CRWrnafold:
0.322
Sensitivity RNASampler(seed):
0.358
CRWrnafold:
0.358
Positive Predictive Value RNASampler(seed):
0.511
CRWrnafold:
0.304
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
RNASampler(seed) vs DAFS(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
DAFS(seed):
N/A
Sensitivity RNASampler(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNASampler(seed) vs Mastr(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Mastr(seed):
0.061
Sensitivity RNASampler(seed):
0.472
Mastr(seed):
0.010
Positive Predictive Value RNASampler(seed):
0.678
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
Multilign(20) |
11
CentroidAlifold(seed) vs Multilign(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.733
Multilign(20):
0.517
Sensitivity CentroidAlifold(seed):
0.565
Multilign(20):
0.530
Positive Predictive Value CentroidAlifold(seed):
0.956
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
11
CentroidAlifold(20) vs Multilign(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.740
Multilign(20):
0.517
Sensitivity CentroidAlifold(20):
0.635
Multilign(20):
0.530
Positive Predictive Value CentroidAlifold(20):
0.869
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.62913390836e-08
|
9
PETfold_pre2.0(seed) vs Multilign(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.818
Multilign(20):
0.441
Sensitivity PETfold_pre2.0(seed):
0.780
Multilign(20):
0.458
Positive Predictive Value PETfold_pre2.0(seed):
0.863
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
9
RNAalifold(seed) vs Multilign(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.684
Multilign(20):
0.459
Sensitivity RNAalifold(seed):
0.500
Multilign(20):
0.468
Positive Predictive Value RNAalifold(seed):
0.941
Multilign(20):
0.461
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
RNAalifold(20) vs Multilign(20)
Matthews Correlation Coefficient RNAalifold(20):
0.689
Multilign(20):
0.517
Sensitivity RNAalifold(20):
0.643
Multilign(20):
0.530
Positive Predictive Value RNAalifold(20):
0.744
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.69265863073e-08
|
10
MXScarna(seed) vs Multilign(20)
Matthews Correlation Coefficient MXScarna(seed):
0.623
Multilign(20):
0.481
Sensitivity MXScarna(seed):
0.569
Multilign(20):
0.493
Positive Predictive Value MXScarna(seed):
0.690
Multilign(20):
0.481
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.06761512825e-08
|
11
CentroidFold vs Multilign(20)
Matthews Correlation Coefficient CentroidFold:
0.579
Multilign(20):
0.517
Sensitivity CentroidFold:
0.591
Multilign(20):
0.530
Positive Predictive Value CentroidFold:
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
11
PPfold(20) vs Multilign(20)
Matthews Correlation Coefficient PPfold(20):
0.700
Multilign(20):
0.517
Sensitivity PPfold(20):
0.652
Multilign(20):
0.530
Positive Predictive Value PPfold(20):
0.758
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
11
TurboFold(20) vs Multilign(20)
Matthews Correlation Coefficient TurboFold(20):
0.653
Multilign(20):
0.517
Sensitivity TurboFold(20):
0.652
Multilign(20):
0.530
Positive Predictive Value TurboFold(20):
0.661
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
11
RNASampler(20) vs Multilign(20)
Matthews Correlation Coefficient RNASampler(20):
0.662
Multilign(20):
0.517
Sensitivity RNASampler(20):
0.617
Multilign(20):
0.530
Positive Predictive Value RNASampler(20):
0.717
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
11
MXScarna(20) vs Multilign(20)
Matthews Correlation Coefficient MXScarna(20):
0.628
Multilign(20):
0.517
Sensitivity MXScarna(20):
0.600
Multilign(20):
0.530
Positive Predictive Value MXScarna(20):
0.667
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
9
ContextFold vs Multilign(20)
Matthews Correlation Coefficient ContextFold:
0.576
Multilign(20):
0.441
Sensitivity ContextFold:
0.565
Multilign(20):
0.458
Positive Predictive Value ContextFold:
0.595
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
IPknot vs Multilign(20)
Matthews Correlation Coefficient IPknot:
0.541
Multilign(20):
0.517
Sensitivity IPknot:
0.548
Multilign(20):
0.530
Positive Predictive Value IPknot:
0.545
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.39318217748e-06
|
11
Contrafold vs Multilign(20)
Matthews Correlation Coefficient Contrafold:
0.567
Multilign(20):
0.517
Sensitivity Contrafold:
0.596
Multilign(20):
0.530
Positive Predictive Value Contrafold:
0.550
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.52220743227e-08
|
11
Carnac(20) vs Multilign(20)
Matthews Correlation Coefficient Carnac(20):
0.608
Multilign(20):
0.517
Sensitivity Carnac(20):
0.439
Multilign(20):
0.530
Positive Predictive Value Carnac(20):
0.849
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.1568170475e-08
|
11
Murlet(20) vs Multilign(20)
Matthews Correlation Coefficient Murlet(20):
0.595
Multilign(20):
0.517
Sensitivity Murlet(20):
0.539
Multilign(20):
0.530
Positive Predictive Value Murlet(20):
0.667
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 7.93000771886e-09
|
9
PETfold_pre2.0(20) vs Multilign(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Multilign(20):
0.441
Sensitivity PETfold_pre2.0(20):
0.655
Multilign(20):
0.458
Positive Predictive Value PETfold_pre2.0(20):
0.707
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
Sfold vs Multilign(20)
Matthews Correlation Coefficient Sfold:
0.539
Multilign(20):
0.517
Sensitivity Sfold:
0.535
Multilign(20):
0.530
Positive Predictive Value Sfold:
0.554
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.59167096901e-06
|
11
Pknots vs Multilign(20)
Matthews Correlation Coefficient Pknots:
0.581
Multilign(20):
0.517
Sensitivity Pknots:
0.613
Multilign(20):
0.530
Positive Predictive Value Pknots:
0.560
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
11
Multilign(20) vs MaxExpect
Matthews Correlation Coefficient Multilign(20):
0.517
MaxExpect:
0.483
Sensitivity Multilign(20):
0.530
MaxExpect:
0.504
Positive Predictive Value Multilign(20):
0.515
MaxExpect:
0.473
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.28800897435e-08
|
8
TurboFold(seed) vs Multilign(20)
Matthews Correlation Coefficient TurboFold(seed):
0.563
Multilign(20):
0.500
Sensitivity TurboFold(seed):
0.572
Multilign(20):
0.518
Positive Predictive Value TurboFold(seed):
0.562
Multilign(20):
0.491
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
11
PknotsRG vs Multilign(20)
Matthews Correlation Coefficient PknotsRG:
0.556
Multilign(20):
0.517
Sensitivity PknotsRG:
0.609
Multilign(20):
0.530
Positive Predictive Value PknotsRG:
0.519
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
7
Cylofold vs Multilign(20)
Matthews Correlation Coefficient Cylofold:
0.780
Multilign(20):
0.599
Sensitivity Cylofold:
0.752
Multilign(20):
0.567
Positive Predictive Value Cylofold:
0.819
Multilign(20):
0.650
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
11
CentroidHomfold‑LAST vs Multilign(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.572
Multilign(20):
0.517
Sensitivity CentroidHomfold‑LAST:
0.578
Multilign(20):
0.530
Positive Predictive Value CentroidHomfold‑LAST:
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 9.26036189514e-09
|
9
RNASLOpt vs Multilign(20)
Matthews Correlation Coefficient RNASLOpt:
0.506
Multilign(20):
0.441
Sensitivity RNASLOpt:
0.525
Multilign(20):
0.458
Positive Predictive Value RNASLOpt:
0.497
Multilign(20):
0.435
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
McQFold vs Multilign(20)
Matthews Correlation Coefficient McQFold:
0.632
Multilign(20):
0.517
Sensitivity McQFold:
0.678
Multilign(20):
0.530
Positive Predictive Value McQFold:
0.598
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.89649746203e-08
|
11
Multilign(20) vs ProbKnot
Matthews Correlation Coefficient Multilign(20):
0.517
ProbKnot:
0.483
Sensitivity Multilign(20):
0.530
ProbKnot:
0.526
Positive Predictive Value Multilign(20):
0.515
ProbKnot:
0.455
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.06842734121e-08
|
11
Multilign(20) vs UNAFold
Matthews Correlation Coefficient Multilign(20):
0.517
UNAFold:
0.483
Sensitivity Multilign(20):
0.530
UNAFold:
0.517
Positive Predictive Value Multilign(20):
0.515
UNAFold:
0.463
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 3.47172999197e-08
|
11
HotKnots vs Multilign(20)
Matthews Correlation Coefficient HotKnots:
0.534
Multilign(20):
0.517
Sensitivity HotKnots:
0.578
Multilign(20):
0.530
Positive Predictive Value HotKnots:
0.504
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.76930198676e-06
|
11
RNAshapes vs Multilign(20)
Matthews Correlation Coefficient RNAshapes:
0.519
Multilign(20):
0.517
Sensitivity RNAshapes:
0.552
Multilign(20):
0.530
Positive Predictive Value RNAshapes:
0.498
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.428395601111
|
11
Multilign(20) vs RNAfold
Matthews Correlation Coefficient Multilign(20):
0.517
RNAfold:
0.492
Sensitivity Multilign(20):
0.530
RNAfold:
0.526
Positive Predictive Value Multilign(20):
0.515
RNAfold:
0.471
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 6.52786411104e-07
|
4
Afold vs Multilign(20)
Matthews Correlation Coefficient Afold:
0.501
Multilign(20):
0.385
Sensitivity Afold:
0.554
Multilign(20):
0.419
Positive Predictive Value Afold:
0.461
Multilign(20):
0.365
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
11
RSpredict(20) vs Multilign(20)
Matthews Correlation Coefficient RSpredict(20):
0.537
Multilign(20):
0.517
Sensitivity RSpredict(20):
0.509
Multilign(20):
0.530
Positive Predictive Value RSpredict(20):
0.576
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.3949608788e-07
|
4
Multilign(seed) vs Multilign(20)
Matthews Correlation Coefficient Multilign(seed):
0.659
Multilign(20):
0.578
Sensitivity Multilign(seed):
0.629
Multilign(20):
0.588
Positive Predictive Value Multilign(seed):
0.701
Multilign(20):
0.582
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
11
Multilign(20) vs RNAsubopt
Matthews Correlation Coefficient Multilign(20):
0.517
RNAsubopt:
0.515
Sensitivity Multilign(20):
0.530
RNAsubopt:
0.561
Positive Predictive Value Multilign(20):
0.515
RNAsubopt:
0.483
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.436769378506
|
11
Multilign(20) vs Fold
Matthews Correlation Coefficient Multilign(20):
0.517
Fold:
0.435
Sensitivity Multilign(20):
0.530
Fold:
0.470
Positive Predictive Value Multilign(20):
0.515
Fold:
0.415
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.32883086441e-08
|
11
Vsfold4 vs Multilign(20)
Matthews Correlation Coefficient Vsfold4:
0.526
Multilign(20):
0.517
Sensitivity Vsfold4:
0.535
Multilign(20):
0.530
Positive Predictive Value Vsfold4:
0.528
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.00216473880436
|
5
RNASampler(seed) vs Multilign(20)
Matthews Correlation Coefficient RNASampler(seed):
0.558
Multilign(20):
0.471
Sensitivity RNASampler(seed):
0.523
Multilign(20):
0.523
Positive Predictive Value RNASampler(seed):
0.602
Multilign(20):
0.431
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
|
-
Mastr(20) vs Multilign(20)
Matthews Correlation Coefficient Mastr(20):
0.577
Multilign(20):
0.517
Sensitivity Mastr(20):
0.409
Multilign(20):
0.530
Positive Predictive Value Mastr(20):
0.825
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
?
Murlet(seed) vs Multilign(20)
Matthews Correlation Coefficient Murlet(seed):
0.542
Multilign(20):
0.459
Sensitivity Murlet(seed):
0.358
Multilign(20):
0.468
Positive Predictive Value Murlet(seed):
0.829
Multilign(20):
0.461
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
=
Multilign(20) vs Vsfold5
Matthews Correlation Coefficient Multilign(20):
0.517
Vsfold5:
0.504
Sensitivity Multilign(20):
0.530
Vsfold5:
0.539
Positive Predictive Value Multilign(20):
0.515
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.0165984560054
|
?
Multilign(20) vs Alterna
Matthews Correlation Coefficient Multilign(20):
0.784
Alterna:
0.673
Sensitivity Multilign(20):
0.774
Alterna:
0.660
Positive Predictive Value Multilign(20):
0.804
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(20) vs RDfolder
Matthews Correlation Coefficient Multilign(20):
0.707
RDfolder:
0.608
Sensitivity Multilign(20):
0.684
RDfolder:
0.533
Positive Predictive Value Multilign(20):
0.743
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Multilign(20) vs MCFold
Matthews Correlation Coefficient Multilign(20):
0.508
MCFold:
0.424
Sensitivity Multilign(20):
0.527
MCFold:
0.488
Positive Predictive Value Multilign(20):
0.500
MCFold:
0.381
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.20383511129e-08
|
+
Multilign(20) vs RNAwolf
Matthews Correlation Coefficient Multilign(20):
0.517
RNAwolf:
0.446
Sensitivity Multilign(20):
0.530
RNAwolf:
0.465
Positive Predictive Value Multilign(20):
0.515
RNAwolf:
0.440
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.27752322258e-08
|
+
Multilign(20) vs RSpredict(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
RSpredict(seed):
0.278
Sensitivity Multilign(20):
0.530
RSpredict(seed):
0.139
Positive Predictive Value Multilign(20):
0.515
RSpredict(seed):
0.571
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
?
Multilign(20) vs Carnac(seed)
Matthews Correlation Coefficient Multilign(20):
0.459
Carnac(seed):
0.000
Sensitivity Multilign(20):
0.468
Carnac(seed):
0.000
Positive Predictive Value Multilign(20):
0.461
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
Multilign(20) vs NanoFolder
Matthews Correlation Coefficient Multilign(20):
0.457
NanoFolder:
0.314
Sensitivity Multilign(20):
0.496
NanoFolder:
0.427
Positive Predictive Value Multilign(20):
0.430
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Multilign(20) vs PPfold(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
PPfold(seed):
0.058
Sensitivity Multilign(20):
0.530
PPfold(seed):
0.013
Positive Predictive Value Multilign(20):
0.515
PPfold(seed):
0.273
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
?
CMfinder(seed) vs Multilign(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Multilign(20):
N/A
Sensitivity CMfinder(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs Multilign(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Multilign(20) vs DAFS(20)
Matthews Correlation Coefficient Multilign(20):
N/A
DAFS(20):
N/A
Sensitivity Multilign(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Multilign(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs Multilign(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Multilign(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
Multilign(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Multilign(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
Multilign(20):
0.438
Sensitivity CMfinder(20):
0.500
Multilign(20):
0.469
Positive Predictive Value CMfinder(20):
0.681
Multilign(20):
0.418
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Multilign(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Multilign(20):
0.510
Sensitivity CRWrnafold:
0.611
Multilign(20):
0.509
Positive Predictive Value CRWrnafold:
0.584
Multilign(20):
0.524
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Multilign(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
Multilign(20):
N/A
Sensitivity DAFS(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Multilign(20) vs Mastr(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
Mastr(seed):
0.000
Sensitivity Multilign(20):
0.530
Mastr(seed):
0.000
Positive Predictive Value Multilign(20):
0.515
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.38080110441e-09
|
Mastr(20) |
21
CentroidAlifold(seed) vs Mastr(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.730
Mastr(20):
0.508
Sensitivity CentroidAlifold(seed):
0.575
Mastr(20):
0.329
Positive Predictive Value CentroidAlifold(seed):
0.930
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
CentroidAlifold(20) vs Mastr(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Mastr(20):
0.508
Sensitivity CentroidAlifold(20):
0.664
Mastr(20):
0.329
Positive Predictive Value CentroidAlifold(20):
0.900
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.81788725234e-08
|
10
PETfold_pre2.0(seed) vs Mastr(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.803
Mastr(20):
0.467
Sensitivity PETfold_pre2.0(seed):
0.752
Mastr(20):
0.272
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 3.37653953513e-09
|
17
RNAalifold(seed) vs Mastr(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.670
Mastr(20):
0.412
Sensitivity RNAalifold(seed):
0.487
Mastr(20):
0.234
Positive Predictive Value RNAalifold(seed):
0.927
Mastr(20):
0.731
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.51155234096e-08
|
21
RNAalifold(20) vs Mastr(20)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Mastr(20):
0.508
Sensitivity RNAalifold(20):
0.654
Mastr(20):
0.329
Positive Predictive Value RNAalifold(20):
0.826
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
20
MXScarna(seed) vs Mastr(20)
Matthews Correlation Coefficient MXScarna(seed):
0.707
Mastr(20):
0.490
Sensitivity MXScarna(seed):
0.646
Mastr(20):
0.308
Positive Predictive Value MXScarna(seed):
0.779
Mastr(20):
0.786
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
CentroidFold vs Mastr(20)
Matthews Correlation Coefficient CentroidFold:
0.667
Mastr(20):
0.508
Sensitivity CentroidFold:
0.649
Mastr(20):
0.329
Positive Predictive Value CentroidFold:
0.692
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
12
PPfold(20) vs Mastr(20)
Matthews Correlation Coefficient PPfold(20):
0.668
Mastr(20):
0.544
Sensitivity PPfold(20):
0.614
Mastr(20):
0.363
Positive Predictive Value PPfold(20):
0.733
Mastr(20):
0.825
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.96907987703e-08
|
12
TurboFold(20) vs Mastr(20)
Matthews Correlation Coefficient TurboFold(20):
0.636
Mastr(20):
0.544
Sensitivity TurboFold(20):
0.629
Mastr(20):
0.363
Positive Predictive Value TurboFold(20):
0.649
Mastr(20):
0.825
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.72523032126e-08
|
21
RNASampler(20) vs Mastr(20)
Matthews Correlation Coefficient RNASampler(20):
0.692
Mastr(20):
0.508
Sensitivity RNASampler(20):
0.621
Mastr(20):
0.329
Positive Predictive Value RNASampler(20):
0.776
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
21
MXScarna(20) vs Mastr(20)
Matthews Correlation Coefficient MXScarna(20):
0.678
Mastr(20):
0.508
Sensitivity MXScarna(20):
0.640
Mastr(20):
0.329
Positive Predictive Value MXScarna(20):
0.724
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
10
ContextFold vs Mastr(20)
Matthews Correlation Coefficient ContextFold:
0.558
Mastr(20):
0.467
Sensitivity ContextFold:
0.544
Mastr(20):
0.272
Positive Predictive Value ContextFold:
0.580
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.14531876181e-08
|
12
Mastr(20) vs IPknot
Matthews Correlation Coefficient Mastr(20):
0.544
IPknot:
0.536
Sensitivity Mastr(20):
0.363
IPknot:
0.525
Positive Predictive Value Mastr(20):
0.825
IPknot:
0.557
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 0.0268470467617
|
21
Contrafold vs Mastr(20)
Matthews Correlation Coefficient Contrafold:
0.608
Mastr(20):
0.508
Sensitivity Contrafold:
0.621
Mastr(20):
0.329
Positive Predictive Value Contrafold:
0.601
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
21
Carnac(20) vs Mastr(20)
Matthews Correlation Coefficient Carnac(20):
0.641
Mastr(20):
0.508
Sensitivity Carnac(20):
0.456
Mastr(20):
0.329
Positive Predictive Value Carnac(20):
0.908
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
Murlet(20) vs Mastr(20)
Matthews Correlation Coefficient Murlet(20):
0.625
Mastr(20):
0.508
Sensitivity Murlet(20):
0.530
Mastr(20):
0.329
Positive Predictive Value Murlet(20):
0.744
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
10
PETfold_pre2.0(20) vs Mastr(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Mastr(20):
0.467
Sensitivity PETfold_pre2.0(20):
0.597
Mastr(20):
0.272
Positive Predictive Value PETfold_pre2.0(20):
0.654
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
21
Sfold vs Mastr(20)
Matthews Correlation Coefficient Sfold:
0.609
Mastr(20):
0.508
Sensitivity Sfold:
0.583
Mastr(20):
0.329
Positive Predictive Value Sfold:
0.642
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
20
Pknots vs Mastr(20)
Matthews Correlation Coefficient Pknots:
0.590
Mastr(20):
0.555
Sensitivity Pknots:
0.630
Mastr(20):
0.393
Positive Predictive Value Pknots:
0.561
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.52941956893e-07
|
21
MaxExpect vs Mastr(20)
Matthews Correlation Coefficient MaxExpect:
0.608
Mastr(20):
0.508
Sensitivity MaxExpect:
0.611
Mastr(20):
0.329
Positive Predictive Value MaxExpect:
0.612
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
9
TurboFold(seed) vs Mastr(20)
Matthews Correlation Coefficient TurboFold(seed):
0.553
Mastr(20):
0.470
Sensitivity TurboFold(seed):
0.554
Mastr(20):
0.287
Positive Predictive Value TurboFold(seed):
0.560
Mastr(20):
0.778
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
21
PknotsRG vs Mastr(20)
Matthews Correlation Coefficient PknotsRG:
0.598
Mastr(20):
0.508
Sensitivity PknotsRG:
0.633
Mastr(20):
0.329
Positive Predictive Value PknotsRG:
0.571
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
9
Cylofold vs Mastr(20)
Matthews Correlation Coefficient Cylofold:
0.752
Mastr(20):
0.517
Sensitivity Cylofold:
0.734
Mastr(20):
0.332
Positive Predictive Value Cylofold:
0.778
Mastr(20):
0.817
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
Mastr(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Mastr(20):
0.577
CentroidHomfold‑LAST:
0.572
Sensitivity Mastr(20):
0.409
CentroidHomfold‑LAST:
0.578
Positive Predictive Value Mastr(20):
0.825
CentroidHomfold‑LAST:
0.576
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.226383997251
|
10
RNASLOpt vs Mastr(20)
Matthews Correlation Coefficient RNASLOpt:
0.480
Mastr(20):
0.467
Sensitivity RNASLOpt:
0.500
Mastr(20):
0.272
Positive Predictive Value RNASLOpt:
0.470
Mastr(20):
0.812
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.53906836456e-05
|
21
McQFold vs Mastr(20)
Matthews Correlation Coefficient McQFold:
0.613
Mastr(20):
0.508
Sensitivity McQFold:
0.628
Mastr(20):
0.329
Positive Predictive Value McQFold:
0.605
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
ProbKnot vs Mastr(20)
Matthews Correlation Coefficient ProbKnot:
0.562
Mastr(20):
0.409
Sensitivity ProbKnot:
0.600
Mastr(20):
0.227
Positive Predictive Value ProbKnot:
0.532
Mastr(20):
0.745
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
21
UNAFold vs Mastr(20)
Matthews Correlation Coefficient UNAFold:
0.581
Mastr(20):
0.508
Sensitivity UNAFold:
0.602
Mastr(20):
0.329
Positive Predictive Value UNAFold:
0.568
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 1.00387151331e-07
|
21
HotKnots vs Mastr(20)
Matthews Correlation Coefficient HotKnots:
0.548
Mastr(20):
0.508
Sensitivity HotKnots:
0.585
Mastr(20):
0.329
Positive Predictive Value HotKnots:
0.520
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.97437468777e-06
|
21
RNAshapes vs Mastr(20)
Matthews Correlation Coefficient RNAshapes:
0.576
Mastr(20):
0.508
Sensitivity RNAshapes:
0.596
Mastr(20):
0.329
Positive Predictive Value RNAshapes:
0.564
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAfold vs Mastr(20)
Matthews Correlation Coefficient RNAfold:
0.572
Mastr(20):
0.508
Sensitivity RNAfold:
0.601
Mastr(20):
0.329
Positive Predictive Value RNAfold:
0.552
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
11
Afold vs Mastr(20)
Matthews Correlation Coefficient Afold:
0.547
Mastr(20):
0.526
Sensitivity Afold:
0.579
Mastr(20):
0.333
Positive Predictive Value Afold:
0.524
Mastr(20):
0.835
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.00607931304316
|
21
RSpredict(20) vs Mastr(20)
Matthews Correlation Coefficient RSpredict(20):
0.585
Mastr(20):
0.508
Sensitivity RSpredict(20):
0.534
Mastr(20):
0.329
Positive Predictive Value RSpredict(20):
0.649
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
5
Multilign(seed) vs Mastr(20)
Matthews Correlation Coefficient Multilign(seed):
0.625
Mastr(20):
0.531
Sensitivity Multilign(seed):
0.587
Mastr(20):
0.381
Positive Predictive Value Multilign(seed):
0.673
Mastr(20):
0.750
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
21
RNAsubopt vs Mastr(20)
Matthews Correlation Coefficient RNAsubopt:
0.564
Mastr(20):
0.508
Sensitivity RNAsubopt:
0.596
Mastr(20):
0.329
Positive Predictive Value RNAsubopt:
0.542
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.50294594097e-08
|
16
Fold vs Mastr(20)
Matthews Correlation Coefficient Fold:
0.526
Mastr(20):
0.409
Sensitivity Fold:
0.562
Mastr(20):
0.227
Positive Predictive Value Fold:
0.499
Mastr(20):
0.745
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.78993384543e-08
|
20
Vsfold4 vs Mastr(20)
Matthews Correlation Coefficient Vsfold4:
0.537
Mastr(20):
0.521
Sensitivity Vsfold4:
0.531
Mastr(20):
0.346
Positive Predictive Value Vsfold4:
0.551
Mastr(20):
0.793
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.0115067390742
|
8
RNASampler(seed) vs Mastr(20)
Matthews Correlation Coefficient RNASampler(seed):
0.576
Mastr(20):
0.520
Sensitivity RNASampler(seed):
0.525
Mastr(20):
0.315
Positive Predictive Value RNASampler(seed):
0.638
Mastr(20):
0.864
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
11
Mastr(20) vs Multilign(20)
Matthews Correlation Coefficient Mastr(20):
0.577
Multilign(20):
0.517
Sensitivity Mastr(20):
0.409
Multilign(20):
0.530
Positive Predictive Value Mastr(20):
0.825
Multilign(20):
0.515
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.47941000302e-08
|
|
-
Murlet(seed) vs Mastr(20)
Matthews Correlation Coefficient Murlet(seed):
0.564
Mastr(20):
0.457
Sensitivity Murlet(seed):
0.366
Mastr(20):
0.290
Positive Predictive Value Murlet(seed):
0.876
Mastr(20):
0.731
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
+
Mastr(20) vs Vsfold5
Matthews Correlation Coefficient Mastr(20):
0.521
Vsfold5:
0.493
Sensitivity Mastr(20):
0.346
Vsfold5:
0.493
Positive Predictive Value Mastr(20):
0.793
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 2.51034769273e-06
|
?
Mastr(20) vs Alterna
Matthews Correlation Coefficient Mastr(20):
0.783
Alterna:
0.593
Sensitivity Mastr(20):
0.725
Alterna:
0.596
Positive Predictive Value Mastr(20):
0.855
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Mastr(20) vs RDfolder
Matthews Correlation Coefficient Mastr(20):
0.744
RDfolder:
0.641
Sensitivity Mastr(20):
0.667
RDfolder:
0.585
Positive Predictive Value Mastr(20):
0.841
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
+
Mastr(20) vs MCFold
Matthews Correlation Coefficient Mastr(20):
0.591
MCFold:
0.453
Sensitivity Mastr(20):
0.405
MCFold:
0.507
Positive Predictive Value Mastr(20):
0.872
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
+
Mastr(20) vs RNAwolf
Matthews Correlation Coefficient Mastr(20):
0.544
RNAwolf:
0.396
Sensitivity Mastr(20):
0.363
RNAwolf:
0.425
Positive Predictive Value Mastr(20):
0.825
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
+
Mastr(20) vs RSpredict(seed)
Matthews Correlation Coefficient Mastr(20):
0.508
RSpredict(seed):
0.296
Sensitivity Mastr(20):
0.329
RSpredict(seed):
0.148
Positive Predictive Value Mastr(20):
0.793
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
+
Mastr(20) vs Carnac(seed)
Matthews Correlation Coefficient Mastr(20):
0.457
Carnac(seed):
0.000
Sensitivity Mastr(20):
0.290
Carnac(seed):
0.000
Positive Predictive Value Mastr(20):
0.731
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
?
Mastr(20) vs NanoFolder
Matthews Correlation Coefficient Mastr(20):
0.452
NanoFolder:
0.314
Sensitivity Mastr(20):
0.282
NanoFolder:
0.427
Positive Predictive Value Mastr(20):
0.733
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
+
Mastr(20) vs PPfold(seed)
Matthews Correlation Coefficient Mastr(20):
0.544
PPfold(seed):
0.073
Sensitivity Mastr(20):
0.363
PPfold(seed):
0.019
Positive Predictive Value Mastr(20):
0.825
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
?
Mastr(20) vs CMfinder(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
CMfinder(seed):
N/A
Sensitivity Mastr(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(20) vs DAFS(20)
Matthews Correlation Coefficient Mastr(20):
N/A
DAFS(20):
N/A
Sensitivity Mastr(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Mastr(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Mastr(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Mastr(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Mastr(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(20) vs CMfinder(20)
Matthews Correlation Coefficient Mastr(20):
0.590
CMfinder(20):
0.580
Sensitivity Mastr(20):
0.388
CMfinder(20):
0.500
Positive Predictive Value Mastr(20):
0.905
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Mastr(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Mastr(20):
0.502
Sensitivity CRWrnafold:
0.611
Mastr(20):
0.361
Positive Predictive Value CRWrnafold:
0.584
Mastr(20):
0.709
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
Mastr(20) vs DAFS(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
DAFS(seed):
N/A
Sensitivity Mastr(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Mastr(20) vs Mastr(seed)
Matthews Correlation Coefficient Mastr(20):
0.508
Mastr(seed):
0.000
Sensitivity Mastr(20):
0.329
Mastr(seed):
0.000
Positive Predictive Value Mastr(20):
0.793
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
Murlet(seed) |
22
CentroidAlifold(seed) vs Murlet(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.795
Murlet(seed):
0.534
Sensitivity CentroidAlifold(seed):
0.669
Murlet(seed):
0.349
Positive Predictive Value CentroidAlifold(seed):
0.950
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
CentroidAlifold(20) vs Murlet(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.753
Murlet(seed):
0.564
Sensitivity CentroidAlifold(20):
0.641
Murlet(seed):
0.366
Positive Predictive Value CentroidAlifold(20):
0.890
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
13
PETfold_pre2.0(seed) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.769
Murlet(seed):
0.473
Sensitivity PETfold_pre2.0(seed):
0.697
Murlet(seed):
0.300
Positive Predictive Value PETfold_pre2.0(seed):
0.853
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
22
RNAalifold(seed) vs Murlet(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.695
Murlet(seed):
0.534
Sensitivity RNAalifold(seed):
0.532
Murlet(seed):
0.349
Positive Predictive Value RNAalifold(seed):
0.915
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
RNAalifold(20) vs Murlet(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.705
Murlet(seed):
0.564
Sensitivity RNAalifold(20):
0.636
Murlet(seed):
0.366
Positive Predictive Value RNAalifold(20):
0.788
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.91763127434e-08
|
22
MXScarna(seed) vs Murlet(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.668
Murlet(seed):
0.534
Sensitivity MXScarna(seed):
0.611
Murlet(seed):
0.349
Positive Predictive Value MXScarna(seed):
0.738
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
22
CentroidFold vs Murlet(seed)
Matthews Correlation Coefficient CentroidFold:
0.741
Murlet(seed):
0.534
Sensitivity CentroidFold:
0.706
Murlet(seed):
0.349
Positive Predictive Value CentroidFold:
0.783
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
PPfold(20) vs Murlet(seed)
Matthews Correlation Coefficient PPfold(20):
0.618
Murlet(seed):
0.535
Sensitivity PPfold(20):
0.557
Murlet(seed):
0.342
Positive Predictive Value PPfold(20):
0.693
Murlet(seed):
0.843
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.05690340753e-08
|
10
TurboFold(20) vs Murlet(seed)
Matthews Correlation Coefficient TurboFold(20):
0.601
Murlet(seed):
0.535
Sensitivity TurboFold(20):
0.589
Murlet(seed):
0.342
Positive Predictive Value TurboFold(20):
0.620
Murlet(seed):
0.843
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.46357340646e-08
|
16
RNASampler(20) vs Murlet(seed)
Matthews Correlation Coefficient RNASampler(20):
0.675
Murlet(seed):
0.564
Sensitivity RNASampler(20):
0.606
Murlet(seed):
0.366
Positive Predictive Value RNASampler(20):
0.759
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
16
MXScarna(20) vs Murlet(seed)
Matthews Correlation Coefficient MXScarna(20):
0.659
Murlet(seed):
0.564
Sensitivity MXScarna(20):
0.619
Murlet(seed):
0.366
Positive Predictive Value MXScarna(20):
0.708
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
13
ContextFold vs Murlet(seed)
Matthews Correlation Coefficient ContextFold:
0.574
Murlet(seed):
0.473
Sensitivity ContextFold:
0.550
Murlet(seed):
0.300
Positive Predictive Value ContextFold:
0.609
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
15
IPknot vs Murlet(seed)
Matthews Correlation Coefficient IPknot:
0.658
Murlet(seed):
0.493
Sensitivity IPknot:
0.632
Murlet(seed):
0.320
Positive Predictive Value IPknot:
0.693
Murlet(seed):
0.769
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.86109605532e-08
|
22
Contrafold vs Murlet(seed)
Matthews Correlation Coefficient Contrafold:
0.711
Murlet(seed):
0.534
Sensitivity Contrafold:
0.710
Murlet(seed):
0.349
Positive Predictive Value Contrafold:
0.720
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
Carnac(20) vs Murlet(seed)
Matthews Correlation Coefficient Carnac(20):
0.629
Murlet(seed):
0.564
Sensitivity Carnac(20):
0.426
Murlet(seed):
0.366
Positive Predictive Value Carnac(20):
0.935
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
16
Murlet(20) vs Murlet(seed)
Matthews Correlation Coefficient Murlet(20):
0.619
Murlet(seed):
0.564
Sensitivity Murlet(20):
0.527
Murlet(seed):
0.366
Positive Predictive Value Murlet(20):
0.734
Murlet(seed):
0.876
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
8
PETfold_pre2.0(20) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.547
Murlet(seed):
0.515
Sensitivity PETfold_pre2.0(20):
0.518
Murlet(seed):
0.313
Positive Predictive Value PETfold_pre2.0(20):
0.585
Murlet(seed):
0.852
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
22
Sfold vs Murlet(seed)
Matthews Correlation Coefficient Sfold:
0.699
Murlet(seed):
0.534
Sensitivity Sfold:
0.664
Murlet(seed):
0.349
Positive Predictive Value Sfold:
0.744
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
22
Pknots vs Murlet(seed)
Matthews Correlation Coefficient Pknots:
0.641
Murlet(seed):
0.534
Sensitivity Pknots:
0.673
Murlet(seed):
0.349
Positive Predictive Value Pknots:
0.620
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MaxExpect vs Murlet(seed)
Matthews Correlation Coefficient MaxExpect:
0.656
Murlet(seed):
0.529
Sensitivity MaxExpect:
0.647
Murlet(seed):
0.346
Positive Predictive Value MaxExpect:
0.673
Murlet(seed):
0.819
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
13
TurboFold(seed) vs Murlet(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Murlet(seed):
0.526
Sensitivity TurboFold(seed):
0.598
Murlet(seed):
0.341
Positive Predictive Value TurboFold(seed):
0.630
Murlet(seed):
0.821
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.3551590886e-08
|
22
PknotsRG vs Murlet(seed)
Matthews Correlation Coefficient PknotsRG:
0.686
Murlet(seed):
0.534
Sensitivity PknotsRG:
0.710
Murlet(seed):
0.349
Positive Predictive Value PknotsRG:
0.672
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 4.73774540578e-08
|
11
Cylofold vs Murlet(seed)
Matthews Correlation Coefficient Cylofold:
0.672
Murlet(seed):
0.495
Sensitivity Cylofold:
0.638
Murlet(seed):
0.331
Positive Predictive Value Cylofold:
0.718
Murlet(seed):
0.754
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
13
CentroidHomfold‑LAST vs Murlet(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.585
Murlet(seed):
0.496
Sensitivity CentroidHomfold‑LAST:
0.573
Murlet(seed):
0.334
Positive Predictive Value CentroidHomfold‑LAST:
0.606
Murlet(seed):
0.748
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
13
RNASLOpt vs Murlet(seed)
Matthews Correlation Coefficient RNASLOpt:
0.527
Murlet(seed):
0.473
Sensitivity RNASLOpt:
0.520
Murlet(seed):
0.300
Positive Predictive Value RNASLOpt:
0.544
Murlet(seed):
0.756
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
22
McQFold vs Murlet(seed)
Matthews Correlation Coefficient McQFold:
0.677
Murlet(seed):
0.534
Sensitivity McQFold:
0.683
Murlet(seed):
0.349
Positive Predictive Value McQFold:
0.680
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
18
ProbKnot vs Murlet(seed)
Matthews Correlation Coefficient ProbKnot:
0.609
Murlet(seed):
0.503
Sensitivity ProbKnot:
0.639
Murlet(seed):
0.316
Positive Predictive Value ProbKnot:
0.589
Murlet(seed):
0.811
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
22
UNAFold vs Murlet(seed)
Matthews Correlation Coefficient UNAFold:
0.640
Murlet(seed):
0.534
Sensitivity UNAFold:
0.648
Murlet(seed):
0.349
Positive Predictive Value UNAFold:
0.640
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
22
HotKnots vs Murlet(seed)
Matthews Correlation Coefficient HotKnots:
0.642
Murlet(seed):
0.534
Sensitivity HotKnots:
0.673
Murlet(seed):
0.349
Positive Predictive Value HotKnots:
0.621
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
RNAshapes vs Murlet(seed)
Matthews Correlation Coefficient RNAshapes:
0.651
Murlet(seed):
0.534
Sensitivity RNAshapes:
0.658
Murlet(seed):
0.349
Positive Predictive Value RNAshapes:
0.652
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
RNAfold vs Murlet(seed)
Matthews Correlation Coefficient RNAfold:
0.667
Murlet(seed):
0.534
Sensitivity RNAfold:
0.680
Murlet(seed):
0.349
Positive Predictive Value RNAfold:
0.662
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
11
Afold vs Murlet(seed)
Matthews Correlation Coefficient Afold:
0.657
Murlet(seed):
0.525
Sensitivity Afold:
0.664
Murlet(seed):
0.355
Positive Predictive Value Afold:
0.659
Murlet(seed):
0.788
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
16
Murlet(seed) vs RSpredict(20)
Matthews Correlation Coefficient Murlet(seed):
0.564
RSpredict(20):
0.508
Sensitivity Murlet(seed):
0.366
RSpredict(20):
0.453
Positive Predictive Value Murlet(seed):
0.876
RSpredict(20):
0.579
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.77512146924e-08
|
10
Multilign(seed) vs Murlet(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Murlet(seed):
0.495
Sensitivity Multilign(seed):
0.608
Murlet(seed):
0.323
Positive Predictive Value Multilign(seed):
0.721
Murlet(seed):
0.771
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.61680779366e-09
|
22
RNAsubopt vs Murlet(seed)
Matthews Correlation Coefficient RNAsubopt:
0.639
Murlet(seed):
0.534
Sensitivity RNAsubopt:
0.657
Murlet(seed):
0.349
Positive Predictive Value RNAsubopt:
0.630
Murlet(seed):
0.828
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
18
Fold vs Murlet(seed)
Matthews Correlation Coefficient Fold:
0.561
Murlet(seed):
0.503
Sensitivity Fold:
0.589
Murlet(seed):
0.316
Positive Predictive Value Fold:
0.544
Murlet(seed):
0.811
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
19
Vsfold4 vs Murlet(seed)
Matthews Correlation Coefficient Vsfold4:
0.585
Murlet(seed):
0.533
Sensitivity Vsfold4:
0.567
Murlet(seed):
0.352
Positive Predictive Value Vsfold4:
0.614
Murlet(seed):
0.816
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
12
RNASampler(seed) vs Murlet(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Murlet(seed):
0.498
Sensitivity RNASampler(seed):
0.472
Murlet(seed):
0.322
Positive Predictive Value RNASampler(seed):
0.678
Murlet(seed):
0.780
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
9
Murlet(seed) vs Multilign(20)
Matthews Correlation Coefficient Murlet(seed):
0.542
Multilign(20):
0.459
Sensitivity Murlet(seed):
0.358
Multilign(20):
0.468
Positive Predictive Value Murlet(seed):
0.829
Multilign(20):
0.461
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
16
Murlet(seed) vs Mastr(20)
Matthews Correlation Coefficient Murlet(seed):
0.564
Mastr(20):
0.457
Sensitivity Murlet(seed):
0.366
Mastr(20):
0.290
Positive Predictive Value Murlet(seed):
0.876
Mastr(20):
0.731
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
|
=
Vsfold5 vs Murlet(seed)
Matthews Correlation Coefficient Vsfold5:
0.547
Murlet(seed):
0.540
Sensitivity Vsfold5:
0.545
Murlet(seed):
0.360
Positive Predictive Value Vsfold5:
0.560
Murlet(seed):
0.821
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.301153582462
|
?
Alterna vs Murlet(seed)
Matthews Correlation Coefficient Alterna:
0.729
Murlet(seed):
0.560
Sensitivity Alterna:
0.701
Murlet(seed):
0.424
Positive Predictive Value Alterna:
0.770
Murlet(seed):
0.758
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(seed) vs RDfolder
Matthews Correlation Coefficient Murlet(seed):
0.567
RDfolder:
0.548
Sensitivity Murlet(seed):
0.409
RDfolder:
0.483
Positive Predictive Value Murlet(seed):
0.803
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.59472650156e-07
|
+
Murlet(seed) vs MCFold
Matthews Correlation Coefficient Murlet(seed):
0.529
MCFold:
0.471
Sensitivity Murlet(seed):
0.352
MCFold:
0.516
Positive Predictive Value Murlet(seed):
0.806
MCFold:
0.442
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.12160100812e-08
|
+
Murlet(seed) vs RNAwolf
Matthews Correlation Coefficient Murlet(seed):
0.493
RNAwolf:
0.418
Sensitivity Murlet(seed):
0.320
RNAwolf:
0.431
Positive Predictive Value Murlet(seed):
0.769
RNAwolf:
0.420
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
+
Murlet(seed) vs RSpredict(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
RSpredict(seed):
0.339
Sensitivity Murlet(seed):
0.349
RSpredict(seed):
0.194
Positive Predictive Value Murlet(seed):
0.828
RSpredict(seed):
0.608
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
+
Murlet(seed) vs Carnac(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
Carnac(seed):
0.200
Sensitivity Murlet(seed):
0.349
Carnac(seed):
0.040
Positive Predictive Value Murlet(seed):
0.828
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
?
Murlet(seed) vs NanoFolder
Matthews Correlation Coefficient Murlet(seed):
0.473
NanoFolder:
0.295
Sensitivity Murlet(seed):
0.301
NanoFolder:
0.382
Positive Predictive Value Murlet(seed):
0.754
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
Murlet(seed) vs PPfold(seed)
Matthews Correlation Coefficient Murlet(seed):
0.493
PPfold(seed):
0.214
Sensitivity Murlet(seed):
0.320
PPfold(seed):
0.074
Positive Predictive Value Murlet(seed):
0.769
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
?
CMfinder(seed) vs Murlet(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Murlet(seed):
N/A
Sensitivity CMfinder(seed):
N/A
Murlet(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Murlet(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Murlet(seed):
0.475
Sensitivity PETfold_2.0(seed):
0.806
Murlet(seed):
0.258
Positive Predictive Value PETfold_2.0(seed):
0.862
Murlet(seed):
0.889
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Murlet(seed) vs DAFS(20)
Matthews Correlation Coefficient Murlet(seed):
N/A
DAFS(20):
N/A
Sensitivity Murlet(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Murlet(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Murlet(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Murlet(seed)
Matthews Correlation Coefficient CMfinder(20):
0.385
Murlet(seed):
0.341
Sensitivity CMfinder(20):
0.310
Murlet(seed):
0.207
Positive Predictive Value CMfinder(20):
0.486
Murlet(seed):
0.571
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Murlet(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Murlet(seed):
0.510
Sensitivity CRWrnafold:
0.524
Murlet(seed):
0.349
Positive Predictive Value CRWrnafold:
0.516
Murlet(seed):
0.759
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Murlet(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
Murlet(seed):
N/A
Sensitivity DAFS(seed):
N/A
Murlet(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
Murlet(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Murlet(seed) vs Mastr(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
Mastr(seed):
0.043
Sensitivity Murlet(seed):
0.349
Mastr(seed):
0.005
Positive Predictive Value Murlet(seed):
0.828
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
Vsfold5 |
27
CentroidAlifold(seed) vs Vsfold5
Matthews Correlation Coefficient CentroidAlifold(seed):
0.723
Vsfold5:
0.514
Sensitivity CentroidAlifold(seed):
0.584
Vsfold5:
0.521
Positive Predictive Value CentroidAlifold(seed):
0.899
Vsfold5:
0.516
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
20
CentroidAlifold(20) vs Vsfold5
Matthews Correlation Coefficient CentroidAlifold(20):
0.786
Vsfold5:
0.493
Sensitivity CentroidAlifold(20):
0.683
Vsfold5:
0.493
Positive Predictive Value CentroidAlifold(20):
0.908
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
13
PETfold_pre2.0(seed) vs Vsfold5
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.790
Vsfold5:
0.524
Sensitivity PETfold_pre2.0(seed):
0.732
Vsfold5:
0.550
Positive Predictive Value PETfold_pre2.0(seed):
0.858
Vsfold5:
0.510
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
22
RNAalifold(seed) vs Vsfold5
Matthews Correlation Coefficient RNAalifold(seed):
0.644
Vsfold5:
0.490
Sensitivity RNAalifold(seed):
0.482
Vsfold5:
0.497
Positive Predictive Value RNAalifold(seed):
0.865
Vsfold5:
0.491
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
RNAalifold(20) vs Vsfold5
Matthews Correlation Coefficient RNAalifold(20):
0.747
Vsfold5:
0.493
Sensitivity RNAalifold(20):
0.667
Vsfold5:
0.493
Positive Predictive Value RNAalifold(20):
0.842
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
26
MXScarna(seed) vs Vsfold5
Matthews Correlation Coefficient MXScarna(seed):
0.687
Vsfold5:
0.511
Sensitivity MXScarna(seed):
0.637
Vsfold5:
0.517
Positive Predictive Value MXScarna(seed):
0.746
Vsfold5:
0.513
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
36
CentroidFold vs Vsfold5
Matthews Correlation Coefficient CentroidFold:
0.683
Vsfold5:
0.517
Sensitivity CentroidFold:
0.678
Vsfold5:
0.522
Positive Predictive Value CentroidFold:
0.694
Vsfold5:
0.520
Number of pairs reference - predicted secondary structure: 36
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
PPfold(20) vs Vsfold5
Matthews Correlation Coefficient PPfold(20):
0.700
Vsfold5:
0.504
Sensitivity PPfold(20):
0.652
Vsfold5:
0.539
Positive Predictive Value PPfold(20):
0.758
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
11
TurboFold(20) vs Vsfold5
Matthews Correlation Coefficient TurboFold(20):
0.653
Vsfold5:
0.504
Sensitivity TurboFold(20):
0.652
Vsfold5:
0.539
Positive Predictive Value TurboFold(20):
0.661
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
20
RNASampler(20) vs Vsfold5
Matthews Correlation Coefficient RNASampler(20):
0.710
Vsfold5:
0.493
Sensitivity RNASampler(20):
0.638
Vsfold5:
0.493
Positive Predictive Value RNASampler(20):
0.796
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
MXScarna(20) vs Vsfold5
Matthews Correlation Coefficient MXScarna(20):
0.694
Vsfold5:
0.493
Sensitivity MXScarna(20):
0.658
Vsfold5:
0.493
Positive Predictive Value MXScarna(20):
0.738
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
18
ContextFold vs Vsfold5
Matthews Correlation Coefficient ContextFold:
0.608
Vsfold5:
0.506
Sensitivity ContextFold:
0.585
Vsfold5:
0.530
Positive Predictive Value ContextFold:
0.644
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
20
IPknot vs Vsfold5
Matthews Correlation Coefficient IPknot:
0.619
Vsfold5:
0.504
Sensitivity IPknot:
0.604
Vsfold5:
0.525
Positive Predictive Value IPknot:
0.645
Vsfold5:
0.498
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
39
Contrafold vs Vsfold5
Matthews Correlation Coefficient Contrafold:
0.647
Vsfold5:
0.523
Sensitivity Contrafold:
0.666
Vsfold5:
0.527
Positive Predictive Value Contrafold:
0.635
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
20
Carnac(20) vs Vsfold5
Matthews Correlation Coefficient Carnac(20):
0.653
Vsfold5:
0.493
Sensitivity Carnac(20):
0.469
Vsfold5:
0.493
Positive Predictive Value Carnac(20):
0.915
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
20
Murlet(20) vs Vsfold5
Matthews Correlation Coefficient Murlet(20):
0.637
Vsfold5:
0.493
Sensitivity Murlet(20):
0.538
Vsfold5:
0.493
Positive Predictive Value Murlet(20):
0.760
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 4.89920829651e-08
|
9
PETfold_pre2.0(20) vs Vsfold5
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.678
Vsfold5:
0.508
Sensitivity PETfold_pre2.0(20):
0.655
Vsfold5:
0.554
Positive Predictive Value PETfold_pre2.0(20):
0.707
Vsfold5:
0.476
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
39
Sfold vs Vsfold5
Matthews Correlation Coefficient Sfold:
0.611
Vsfold5:
0.523
Sensitivity Sfold:
0.600
Vsfold5:
0.527
Positive Predictive Value Sfold:
0.630
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
37
Pknots vs Vsfold5
Matthews Correlation Coefficient Pknots:
0.663
Vsfold5:
0.565
Sensitivity Pknots:
0.684
Vsfold5:
0.563
Positive Predictive Value Pknots:
0.652
Vsfold5:
0.578
Number of pairs reference - predicted secondary structure: 37
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
34
MaxExpect vs Vsfold5
Matthews Correlation Coefficient MaxExpect:
0.590
Vsfold5:
0.492
Sensitivity MaxExpect:
0.606
Vsfold5:
0.498
Positive Predictive Value MaxExpect:
0.582
Vsfold5:
0.495
Number of pairs reference - predicted secondary structure: 34
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
TurboFold(seed) vs Vsfold5
Matthews Correlation Coefficient TurboFold(seed):
0.575
Vsfold5:
0.438
Sensitivity TurboFold(seed):
0.568
Vsfold5:
0.462
Positive Predictive Value TurboFold(seed):
0.593
Vsfold5:
0.429
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
39
PknotsRG vs Vsfold5
Matthews Correlation Coefficient PknotsRG:
0.598
Vsfold5:
0.523
Sensitivity PknotsRG:
0.634
Vsfold5:
0.527
Positive Predictive Value PknotsRG:
0.571
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
19
Cylofold vs Vsfold5
Matthews Correlation Coefficient Cylofold:
0.669
Vsfold5:
0.573
Sensitivity Cylofold:
0.648
Vsfold5:
0.568
Positive Predictive Value Cylofold:
0.700
Vsfold5:
0.591
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.10198558684e-08
|
19
CentroidHomfold‑LAST vs Vsfold5
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
Vsfold5:
0.501
Sensitivity CentroidHomfold‑LAST:
0.565
Vsfold5:
0.519
Positive Predictive Value CentroidHomfold‑LAST:
0.601
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.7968284078e-08
|
18
RNASLOpt vs Vsfold5
Matthews Correlation Coefficient RNASLOpt:
0.546
Vsfold5:
0.506
Sensitivity RNASLOpt:
0.542
Vsfold5:
0.530
Positive Predictive Value RNASLOpt:
0.563
Vsfold5:
0.496
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
39
McQFold vs Vsfold5
Matthews Correlation Coefficient McQFold:
0.627
Vsfold5:
0.523
Sensitivity McQFold:
0.646
Vsfold5:
0.527
Positive Predictive Value McQFold:
0.616
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
27
ProbKnot vs Vsfold5
Matthews Correlation Coefficient ProbKnot:
0.544
Vsfold5:
0.491
Sensitivity ProbKnot:
0.585
Vsfold5:
0.509
Positive Predictive Value ProbKnot:
0.512
Vsfold5:
0.481
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
39
UNAFold vs Vsfold5
Matthews Correlation Coefficient UNAFold:
0.593
Vsfold5:
0.523
Sensitivity UNAFold:
0.617
Vsfold5:
0.527
Positive Predictive Value UNAFold:
0.578
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
HotKnots vs Vsfold5
Matthews Correlation Coefficient HotKnots:
0.598
Vsfold5:
0.523
Sensitivity HotKnots:
0.636
Vsfold5:
0.527
Positive Predictive Value HotKnots:
0.570
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
RNAshapes vs Vsfold5
Matthews Correlation Coefficient RNAshapes:
0.584
Vsfold5:
0.523
Sensitivity RNAshapes:
0.602
Vsfold5:
0.527
Positive Predictive Value RNAshapes:
0.574
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
39
RNAfold vs Vsfold5
Matthews Correlation Coefficient RNAfold:
0.575
Vsfold5:
0.523
Sensitivity RNAfold:
0.603
Vsfold5:
0.527
Positive Predictive Value RNAfold:
0.557
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
26
Afold vs Vsfold5
Matthews Correlation Coefficient Afold:
0.543
Vsfold5:
0.512
Sensitivity Afold:
0.581
Vsfold5:
0.517
Positive Predictive Value Afold:
0.514
Vsfold5:
0.515
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 4.98094999346e-07
|
20
RSpredict(20) vs Vsfold5
Matthews Correlation Coefficient RSpredict(20):
0.598
Vsfold5:
0.493
Sensitivity RSpredict(20):
0.545
Vsfold5:
0.493
Positive Predictive Value RSpredict(20):
0.663
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
8
Multilign(seed) vs Vsfold5
Matthews Correlation Coefficient Multilign(seed):
0.628
Vsfold5:
0.447
Sensitivity Multilign(seed):
0.575
Vsfold5:
0.450
Positive Predictive Value Multilign(seed):
0.697
Vsfold5:
0.462
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
39
RNAsubopt vs Vsfold5
Matthews Correlation Coefficient RNAsubopt:
0.579
Vsfold5:
0.523
Sensitivity RNAsubopt:
0.608
Vsfold5:
0.527
Positive Predictive Value RNAsubopt:
0.558
Vsfold5:
0.527
Number of pairs reference - predicted secondary structure: 39
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
28
Fold vs Vsfold5
Matthews Correlation Coefficient Fold:
0.527
Vsfold5:
0.499
Sensitivity Fold:
0.559
Vsfold5:
0.514
Positive Predictive Value Fold:
0.504
Vsfold5:
0.493
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
38
Vsfold4 vs Vsfold5
Matthews Correlation Coefficient Vsfold4:
0.553
Vsfold5:
0.533
Sensitivity Vsfold4:
0.549
Vsfold5:
0.539
Positive Predictive Value Vsfold4:
0.565
Vsfold5:
0.536
Number of pairs reference - predicted secondary structure: 38
Wilcoxon single-rank test P-value: 4.48494289621e-08
|
11
RNASampler(seed) vs Vsfold5
Matthews Correlation Coefficient RNASampler(seed):
0.581
Vsfold5:
0.569
Sensitivity RNASampler(seed):
0.490
Vsfold5:
0.603
Positive Predictive Value RNASampler(seed):
0.696
Vsfold5:
0.546
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 5.83740878464e-05
|
11
Multilign(20) vs Vsfold5
Matthews Correlation Coefficient Multilign(20):
0.517
Vsfold5:
0.504
Sensitivity Multilign(20):
0.530
Vsfold5:
0.539
Positive Predictive Value Multilign(20):
0.515
Vsfold5:
0.482
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 0.0165984560054
|
20
Mastr(20) vs Vsfold5
Matthews Correlation Coefficient Mastr(20):
0.521
Vsfold5:
0.493
Sensitivity Mastr(20):
0.346
Vsfold5:
0.493
Positive Predictive Value Mastr(20):
0.793
Vsfold5:
0.502
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 2.51034769273e-06
|
20
Vsfold5 vs Murlet(seed)
Matthews Correlation Coefficient Vsfold5:
0.547
Murlet(seed):
0.540
Sensitivity Vsfold5:
0.545
Murlet(seed):
0.360
Positive Predictive Value Vsfold5:
0.560
Murlet(seed):
0.821
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 0.301153582462
|
|
-
Alterna vs Vsfold5
Matthews Correlation Coefficient Alterna:
0.647
Vsfold5:
0.568
Sensitivity Alterna:
0.636
Vsfold5:
0.537
Positive Predictive Value Alterna:
0.674
Vsfold5:
0.621
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
+
Vsfold5 vs RDfolder
Matthews Correlation Coefficient Vsfold5:
0.595
RDfolder:
0.569
Sensitivity Vsfold5:
0.576
RDfolder:
0.510
Positive Predictive Value Vsfold5:
0.632
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.55261613711e-07
|
+
Vsfold5 vs MCFold
Matthews Correlation Coefficient Vsfold5:
0.551
MCFold:
0.472
Sensitivity Vsfold5:
0.556
MCFold:
0.518
Positive Predictive Value Vsfold5:
0.559
MCFold:
0.446
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
+
Vsfold5 vs RNAwolf
Matthews Correlation Coefficient Vsfold5:
0.504
RNAwolf:
0.458
Sensitivity Vsfold5:
0.525
RNAwolf:
0.463
Positive Predictive Value Vsfold5:
0.498
RNAwolf:
0.467
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
+
Vsfold5 vs RSpredict(seed)
Matthews Correlation Coefficient Vsfold5:
0.514
RSpredict(seed):
0.285
Sensitivity Vsfold5:
0.521
RSpredict(seed):
0.153
Positive Predictive Value Vsfold5:
0.516
RSpredict(seed):
0.542
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
Vsfold5 vs Carnac(seed)
Matthews Correlation Coefficient Vsfold5:
0.547
Carnac(seed):
0.212
Sensitivity Vsfold5:
0.545
Carnac(seed):
0.045
Positive Predictive Value Vsfold5:
0.560
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
+
Vsfold5 vs NanoFolder
Matthews Correlation Coefficient Vsfold5:
0.490
NanoFolder:
0.406
Sensitivity Vsfold5:
0.528
NanoFolder:
0.516
Positive Predictive Value Vsfold5:
0.466
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
+
Vsfold5 vs PPfold(seed)
Matthews Correlation Coefficient Vsfold5:
0.519
PPfold(seed):
0.220
Sensitivity Vsfold5:
0.541
PPfold(seed):
0.072
Positive Predictive Value Vsfold5:
0.510
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
?
Vsfold5 vs CMfinder(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
CMfinder(seed):
N/A
Sensitivity Vsfold5:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold5 vs PETfold_2.0(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold5 vs DAFS(20)
Matthews Correlation Coefficient Vsfold5:
N/A
DAFS(20):
N/A
Sensitivity Vsfold5:
N/A
DAFS(20):
N/A
Positive Predictive Value Vsfold5:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Vsfold5 vs PETfold_2.0(20)
Matthews Correlation Coefficient Vsfold5:
N/A
PETfold_2.0(20):
N/A
Sensitivity Vsfold5:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Vsfold5:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Vsfold5
Matthews Correlation Coefficient CMfinder(20):
0.580
Vsfold5:
0.489
Sensitivity CMfinder(20):
0.500
Vsfold5:
0.551
Positive Predictive Value CMfinder(20):
0.681
Vsfold5:
0.443
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Vsfold5
Matthews Correlation Coefficient CRWrnafold:
0.502
Vsfold5:
0.395
Sensitivity CRWrnafold:
0.516
Vsfold5:
0.403
Positive Predictive Value CRWrnafold:
0.503
Vsfold5:
0.405
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
Vsfold5 vs DAFS(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
DAFS(seed):
N/A
Sensitivity Vsfold5:
N/A
DAFS(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Vsfold5 vs Mastr(seed)
Matthews Correlation Coefficient Vsfold5:
0.514
Mastr(seed):
0.038
Sensitivity Vsfold5:
0.521
Mastr(seed):
0.004
Positive Predictive Value Vsfold5:
0.516
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
Alterna |
10
CentroidAlifold(seed) vs Alterna
Matthews Correlation Coefficient CentroidAlifold(seed):
0.772
Alterna:
0.657
Sensitivity CentroidAlifold(seed):
0.618
Alterna:
0.651
Positive Predictive Value CentroidAlifold(seed):
0.974
Alterna:
0.677
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.08932646657e-08
|
7
CentroidAlifold(20) vs Alterna
Matthews Correlation Coefficient CentroidAlifold(20):
0.900
Alterna:
0.593
Sensitivity CentroidAlifold(20):
0.836
Alterna:
0.596
Positive Predictive Value CentroidAlifold(20):
0.973
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
1
Alterna vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient Alterna:
0.471
PETfold_pre2.0(seed):
0.411
Sensitivity Alterna:
0.444
PETfold_pre2.0(seed):
0.333
Positive Predictive Value Alterna:
0.533
PETfold_pre2.0(seed):
0.545
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
7
Alterna vs RNAalifold(seed)
Matthews Correlation Coefficient Alterna:
0.729
RNAalifold(seed):
0.686
Sensitivity Alterna:
0.701
RNAalifold(seed):
0.593
Positive Predictive Value Alterna:
0.770
RNAalifold(seed):
0.808
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
RNAalifold(20) vs Alterna
Matthews Correlation Coefficient RNAalifold(20):
0.891
Alterna:
0.593
Sensitivity RNAalifold(20):
0.836
Alterna:
0.596
Positive Predictive Value RNAalifold(20):
0.953
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
10
MXScarna(seed) vs Alterna
Matthews Correlation Coefficient MXScarna(seed):
0.789
Alterna:
0.657
Sensitivity MXScarna(seed):
0.726
Alterna:
0.651
Positive Predictive Value MXScarna(seed):
0.866
Alterna:
0.677
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.16590079822e-09
|
14
CentroidFold vs Alterna
Matthews Correlation Coefficient CentroidFold:
0.823
Alterna:
0.638
Sensitivity CentroidFold:
0.786
Alterna:
0.633
Positive Predictive Value CentroidFold:
0.870
Alterna:
0.658
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
2
PPfold(20) vs Alterna
Matthews Correlation Coefficient PPfold(20):
0.836
Alterna:
0.673
Sensitivity PPfold(20):
0.774
Alterna:
0.660
Positive Predictive Value PPfold(20):
0.911
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
2
TurboFold(20) vs Alterna
Matthews Correlation Coefficient TurboFold(20):
0.797
Alterna:
0.673
Sensitivity TurboFold(20):
0.755
Alterna:
0.660
Positive Predictive Value TurboFold(20):
0.851
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
7
RNASampler(20) vs Alterna
Matthews Correlation Coefficient RNASampler(20):
0.903
Alterna:
0.593
Sensitivity RNASampler(20):
0.825
Alterna:
0.596
Positive Predictive Value RNASampler(20):
0.993
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
MXScarna(20) vs Alterna
Matthews Correlation Coefficient MXScarna(20):
0.819
Alterna:
0.593
Sensitivity MXScarna(20):
0.778
Alterna:
0.596
Positive Predictive Value MXScarna(20):
0.869
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
2
ContextFold vs Alterna
Matthews Correlation Coefficient ContextFold:
0.659
Alterna:
0.362
Sensitivity ContextFold:
0.621
Alterna:
0.345
Positive Predictive Value ContextFold:
0.720
Alterna:
0.417
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
4
IPknot vs Alterna
Matthews Correlation Coefficient IPknot:
0.640
Alterna:
0.568
Sensitivity IPknot:
0.585
Alterna:
0.549
Positive Predictive Value IPknot:
0.716
Alterna:
0.608
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
17
Contrafold vs Alterna
Matthews Correlation Coefficient Contrafold:
0.757
Alterna:
0.647
Sensitivity Contrafold:
0.737
Alterna:
0.636
Positive Predictive Value Contrafold:
0.789
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
7
Carnac(20) vs Alterna
Matthews Correlation Coefficient Carnac(20):
0.828
Alterna:
0.593
Sensitivity Carnac(20):
0.702
Alterna:
0.596
Positive Predictive Value Carnac(20):
0.984
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
Murlet(20) vs Alterna
Matthews Correlation Coefficient Murlet(20):
0.808
Alterna:
0.593
Sensitivity Murlet(20):
0.708
Alterna:
0.596
Positive Predictive Value Murlet(20):
0.931
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
0
PETfold_pre2.0(20) vs Alterna
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
Alterna:
N/A
Sensitivity PETfold_pre2.0(20):
N/A
Alterna:
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
17
Sfold vs Alterna
Matthews Correlation Coefficient Sfold:
0.715
Alterna:
0.647
Sensitivity Sfold:
0.681
Alterna:
0.636
Positive Predictive Value Sfold:
0.763
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
17
Pknots vs Alterna
Matthews Correlation Coefficient Pknots:
0.748
Alterna:
0.647
Sensitivity Pknots:
0.746
Alterna:
0.636
Positive Predictive Value Pknots:
0.761
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.16042554876e-08
|
12
MaxExpect vs Alterna
Matthews Correlation Coefficient MaxExpect:
0.711
Alterna:
0.584
Sensitivity MaxExpect:
0.689
Alterna:
0.582
Positive Predictive Value MaxExpect:
0.745
Alterna:
0.604
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 9.16590079822e-09
|
3
Alterna vs TurboFold(seed)
Matthews Correlation Coefficient Alterna:
0.624
TurboFold(seed):
0.594
Sensitivity Alterna:
0.606
TurboFold(seed):
0.563
Positive Predictive Value Alterna:
0.662
TurboFold(seed):
0.645
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
17
PknotsRG vs Alterna
Matthews Correlation Coefficient PknotsRG:
0.648
Alterna:
0.647
Sensitivity PknotsRG:
0.641
Alterna:
0.636
Positive Predictive Value PknotsRG:
0.670
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0108253790337
|
6
Cylofold vs Alterna
Matthews Correlation Coefficient Cylofold:
0.690
Alterna:
0.560
Sensitivity Cylofold:
0.657
Alterna:
0.552
Positive Predictive Value Cylofold:
0.739
Alterna:
0.587
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
4
Alterna vs CentroidHomfold‑LAST
Matthews Correlation Coefficient Alterna:
0.568
CentroidHomfold‑LAST:
0.553
Sensitivity Alterna:
0.549
CentroidHomfold‑LAST:
0.451
Positive Predictive Value Alterna:
0.608
CentroidHomfold‑LAST:
0.698
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
2
RNASLOpt vs Alterna
Matthews Correlation Coefficient RNASLOpt:
0.379
Alterna:
0.362
Sensitivity RNASLOpt:
0.310
Alterna:
0.345
Positive Predictive Value RNASLOpt:
0.500
Alterna:
0.417
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
17
McQFold vs Alterna
Matthews Correlation Coefficient McQFold:
0.717
Alterna:
0.647
Sensitivity McQFold:
0.689
Alterna:
0.636
Positive Predictive Value McQFold:
0.758
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
5
ProbKnot vs Alterna
Matthews Correlation Coefficient ProbKnot:
0.594
Alterna:
0.536
Sensitivity ProbKnot:
0.604
Alterna:
0.525
Positive Predictive Value ProbKnot:
0.604
Alterna:
0.570
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
17
UNAFold vs Alterna
Matthews Correlation Coefficient UNAFold:
0.720
Alterna:
0.647
Sensitivity UNAFold:
0.706
Alterna:
0.636
Positive Predictive Value UNAFold:
0.746
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
17
HotKnots vs Alterna
Matthews Correlation Coefficient HotKnots:
0.725
Alterna:
0.647
Sensitivity HotKnots:
0.715
Alterna:
0.636
Positive Predictive Value HotKnots:
0.749
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
17
RNAshapes vs Alterna
Matthews Correlation Coefficient RNAshapes:
0.705
Alterna:
0.647
Sensitivity RNAshapes:
0.678
Alterna:
0.636
Positive Predictive Value RNAshapes:
0.745
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
17
RNAfold vs Alterna
Matthews Correlation Coefficient RNAfold:
0.668
Alterna:
0.647
Sensitivity RNAfold:
0.655
Alterna:
0.636
Positive Predictive Value RNAfold:
0.695
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
14
Afold vs Alterna
Matthews Correlation Coefficient Afold:
0.685
Alterna:
0.682
Sensitivity Afold:
0.678
Alterna:
0.668
Positive Predictive Value Afold:
0.705
Alterna:
0.710
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 0.000163747891751
|
7
RSpredict(20) vs Alterna
Matthews Correlation Coefficient RSpredict(20):
0.828
Alterna:
0.593
Sensitivity RSpredict(20):
0.760
Alterna:
0.596
Positive Predictive Value RSpredict(20):
0.909
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
3
Alterna vs Multilign(seed)
Matthews Correlation Coefficient Alterna:
0.624
Multilign(seed):
0.589
Sensitivity Alterna:
0.606
Multilign(seed):
0.549
Positive Predictive Value Alterna:
0.662
Multilign(seed):
0.650
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
17
Alterna vs RNAsubopt
Matthews Correlation Coefficient Alterna:
0.647
RNAsubopt:
0.645
Sensitivity Alterna:
0.636
RNAsubopt:
0.633
Positive Predictive Value Alterna:
0.674
RNAsubopt:
0.673
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 0.0265004568535
|
6
Fold vs Alterna
Matthews Correlation Coefficient Fold:
0.589
Alterna:
0.560
Sensitivity Fold:
0.582
Alterna:
0.552
Positive Predictive Value Fold:
0.614
Alterna:
0.587
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
17
Vsfold4 vs Alterna
Matthews Correlation Coefficient Vsfold4:
0.660
Alterna:
0.647
Sensitivity Vsfold4:
0.624
Alterna:
0.636
Positive Predictive Value Vsfold4:
0.713
Alterna:
0.674
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 7.28379249865e-05
|
5
Alterna vs RNASampler(seed)
Matthews Correlation Coefficient Alterna:
0.732
RNASampler(seed):
0.710
Sensitivity Alterna:
0.702
RNASampler(seed):
0.589
Positive Predictive Value Alterna:
0.777
RNASampler(seed):
0.869
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
2
Multilign(20) vs Alterna
Matthews Correlation Coefficient Multilign(20):
0.784
Alterna:
0.673
Sensitivity Multilign(20):
0.774
Alterna:
0.660
Positive Predictive Value Multilign(20):
0.804
Alterna:
0.700
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
7
Mastr(20) vs Alterna
Matthews Correlation Coefficient Mastr(20):
0.783
Alterna:
0.593
Sensitivity Mastr(20):
0.725
Alterna:
0.596
Positive Predictive Value Mastr(20):
0.855
Alterna:
0.607
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
Alterna vs Murlet(seed)
Matthews Correlation Coefficient Alterna:
0.729
Murlet(seed):
0.560
Sensitivity Alterna:
0.701
Murlet(seed):
0.424
Positive Predictive Value Alterna:
0.770
Murlet(seed):
0.758
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
17
Alterna vs Vsfold5
Matthews Correlation Coefficient Alterna:
0.647
Vsfold5:
0.568
Sensitivity Alterna:
0.636
Vsfold5:
0.537
Positive Predictive Value Alterna:
0.674
Vsfold5:
0.621
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
|
+
Alterna vs RDfolder
Matthews Correlation Coefficient Alterna:
0.647
RDfolder:
0.566
Sensitivity Alterna:
0.636
RDfolder:
0.503
Positive Predictive Value Alterna:
0.674
RDfolder:
0.657
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
+
Alterna vs MCFold
Matthews Correlation Coefficient Alterna:
0.649
MCFold:
0.521
Sensitivity Alterna:
0.636
MCFold:
0.548
Positive Predictive Value Alterna:
0.678
MCFold:
0.516
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
?
RNAwolf vs Alterna
Matthews Correlation Coefficient RNAwolf:
0.583
Alterna:
0.568
Sensitivity RNAwolf:
0.585
Alterna:
0.549
Positive Predictive Value RNAwolf:
0.600
Alterna:
0.608
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
+
Alterna vs RSpredict(seed)
Matthews Correlation Coefficient Alterna:
0.657
RSpredict(seed):
0.464
Sensitivity Alterna:
0.651
RSpredict(seed):
0.299
Positive Predictive Value Alterna:
0.677
RSpredict(seed):
0.742
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
?
Alterna vs Carnac(seed)
Matthews Correlation Coefficient Alterna:
0.729
Carnac(seed):
0.149
Sensitivity Alterna:
0.701
Carnac(seed):
0.023
Positive Predictive Value Alterna:
0.770
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
NanoFolder vs Alterna
Matthews Correlation Coefficient NanoFolder:
0.536
Alterna:
0.471
Sensitivity NanoFolder:
0.611
Alterna:
0.444
Positive Predictive Value NanoFolder:
0.500
Alterna:
0.533
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Alterna vs PPfold(seed)
Matthews Correlation Coefficient Alterna:
0.624
PPfold(seed):
0.247
Sensitivity Alterna:
0.606
PPfold(seed):
0.085
Positive Predictive Value Alterna:
0.662
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
CMfinder(seed) vs Alterna
Matthews Correlation Coefficient CMfinder(seed):
N/A
Alterna:
N/A
Sensitivity CMfinder(seed):
N/A
Alterna:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Alterna vs PETfold_2.0(seed)
Matthews Correlation Coefficient Alterna:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Alterna:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Alterna:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Alterna vs DAFS(20)
Matthews Correlation Coefficient Alterna:
N/A
DAFS(20):
N/A
Sensitivity Alterna:
N/A
DAFS(20):
N/A
Positive Predictive Value Alterna:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Alterna vs PETfold_2.0(20)
Matthews Correlation Coefficient Alterna:
N/A
PETfold_2.0(20):
N/A
Sensitivity Alterna:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Alterna:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Alterna vs CMfinder(20)
Matthews Correlation Coefficient Alterna:
N/A
CMfinder(20):
N/A
Sensitivity Alterna:
N/A
CMfinder(20):
N/A
Positive Predictive Value Alterna:
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Alterna vs CRWrnafold
Matthews Correlation Coefficient Alterna:
0.462
CRWrnafold:
0.394
Sensitivity Alterna:
0.448
CRWrnafold:
0.397
Positive Predictive Value Alterna:
0.500
CRWrnafold:
0.418
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Alterna
Matthews Correlation Coefficient DAFS(seed):
N/A
Alterna:
N/A
Sensitivity DAFS(seed):
N/A
Alterna:
N/A
Positive Predictive Value DAFS(seed):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Alterna vs Mastr(seed)
Matthews Correlation Coefficient Alterna:
0.657
Mastr(seed):
0.000
Sensitivity Alterna:
0.651
Mastr(seed):
0.000
Positive Predictive Value Alterna:
0.677
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
RDfolder |
16
CentroidAlifold(seed) vs RDfolder
Matthews Correlation Coefficient CentroidAlifold(seed):
0.759
RDfolder:
0.594
Sensitivity CentroidAlifold(seed):
0.598
RDfolder:
0.544
Positive Predictive Value CentroidAlifold(seed):
0.974
RDfolder:
0.666
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
12
CentroidAlifold(20) vs RDfolder
Matthews Correlation Coefficient CentroidAlifold(20):
0.884
RDfolder:
0.641
Sensitivity CentroidAlifold(20):
0.815
RDfolder:
0.585
Positive Predictive Value CentroidAlifold(20):
0.965
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.01499922709e-08
|
7
PETfold_pre2.0(seed) vs RDfolder
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.771
RDfolder:
0.456
Sensitivity PETfold_pre2.0(seed):
0.713
RDfolder:
0.420
Positive Predictive Value PETfold_pre2.0(seed):
0.843
RDfolder:
0.516
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
11
RNAalifold(seed) vs RDfolder
Matthews Correlation Coefficient RNAalifold(seed):
0.699
RDfolder:
0.548
Sensitivity RNAalifold(seed):
0.576
RDfolder:
0.483
Positive Predictive Value RNAalifold(seed):
0.861
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
12
RNAalifold(20) vs RDfolder
Matthews Correlation Coefficient RNAalifold(20):
0.859
RDfolder:
0.641
Sensitivity RNAalifold(20):
0.781
RDfolder:
0.585
Positive Predictive Value RNAalifold(20):
0.950
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
15
MXScarna(seed) vs RDfolder
Matthews Correlation Coefficient MXScarna(seed):
0.763
RDfolder:
0.584
Sensitivity MXScarna(seed):
0.701
RDfolder:
0.531
Positive Predictive Value MXScarna(seed):
0.841
RDfolder:
0.660
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
22
CentroidFold vs RDfolder
Matthews Correlation Coefficient CentroidFold:
0.777
RDfolder:
0.558
Sensitivity CentroidFold:
0.748
RDfolder:
0.502
Positive Predictive Value CentroidFold:
0.817
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
7
PPfold(20) vs RDfolder
Matthews Correlation Coefficient PPfold(20):
0.829
RDfolder:
0.608
Sensitivity PPfold(20):
0.770
RDfolder:
0.533
Positive Predictive Value PPfold(20):
0.900
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
7
TurboFold(20) vs RDfolder
Matthews Correlation Coefficient TurboFold(20):
0.768
RDfolder:
0.608
Sensitivity TurboFold(20):
0.717
RDfolder:
0.533
Positive Predictive Value TurboFold(20):
0.832
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
RNASampler(20) vs RDfolder
Matthews Correlation Coefficient RNASampler(20):
0.868
RDfolder:
0.641
Sensitivity RNASampler(20):
0.789
RDfolder:
0.585
Positive Predictive Value RNASampler(20):
0.959
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
12
MXScarna(20) vs RDfolder
Matthews Correlation Coefficient MXScarna(20):
0.789
RDfolder:
0.641
Sensitivity MXScarna(20):
0.737
RDfolder:
0.585
Positive Predictive Value MXScarna(20):
0.854
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
10
ContextFold vs RDfolder
Matthews Correlation Coefficient ContextFold:
0.760
RDfolder:
0.491
Sensitivity ContextFold:
0.703
RDfolder:
0.443
Positive Predictive Value ContextFold:
0.833
RDfolder:
0.566
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.35568223474e-09
|
12
IPknot vs RDfolder
Matthews Correlation Coefficient IPknot:
0.635
RDfolder:
0.521
Sensitivity IPknot:
0.597
RDfolder:
0.458
Positive Predictive Value IPknot:
0.693
RDfolder:
0.612
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
25
Contrafold vs RDfolder
Matthews Correlation Coefficient Contrafold:
0.734
RDfolder:
0.569
Sensitivity Contrafold:
0.722
RDfolder:
0.510
Positive Predictive Value Contrafold:
0.759
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
12
Carnac(20) vs RDfolder
Matthews Correlation Coefficient Carnac(20):
0.745
RDfolder:
0.641
Sensitivity Carnac(20):
0.619
RDfolder:
0.585
Positive Predictive Value Carnac(20):
0.908
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
12
Murlet(20) vs RDfolder
Matthews Correlation Coefficient Murlet(20):
0.777
RDfolder:
0.641
Sensitivity Murlet(20):
0.670
RDfolder:
0.585
Positive Predictive Value Murlet(20):
0.910
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
5
PETfold_pre2.0(20) vs RDfolder
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.826
RDfolder:
0.595
Sensitivity PETfold_pre2.0(20):
0.778
RDfolder:
0.545
Positive Predictive Value PETfold_pre2.0(20):
0.885
RDfolder:
0.667
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
25
Sfold vs RDfolder
Matthews Correlation Coefficient Sfold:
0.665
RDfolder:
0.569
Sensitivity Sfold:
0.629
RDfolder:
0.510
Positive Predictive Value Sfold:
0.717
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
25
Pknots vs RDfolder
Matthews Correlation Coefficient Pknots:
0.729
RDfolder:
0.569
Sensitivity Pknots:
0.733
RDfolder:
0.510
Positive Predictive Value Pknots:
0.736
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
20
MaxExpect vs RDfolder
Matthews Correlation Coefficient MaxExpect:
0.674
RDfolder:
0.535
Sensitivity MaxExpect:
0.661
RDfolder:
0.479
Positive Predictive Value MaxExpect:
0.702
RDfolder:
0.617
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
6
TurboFold(seed) vs RDfolder
Matthews Correlation Coefficient TurboFold(seed):
0.641
RDfolder:
0.451
Sensitivity TurboFold(seed):
0.577
RDfolder:
0.385
Positive Predictive Value TurboFold(seed):
0.728
RDfolder:
0.556
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
25
PknotsRG vs RDfolder
Matthews Correlation Coefficient PknotsRG:
0.651
RDfolder:
0.569
Sensitivity PknotsRG:
0.653
RDfolder:
0.510
Positive Predictive Value PknotsRG:
0.663
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
12
Cylofold vs RDfolder
Matthews Correlation Coefficient Cylofold:
0.680
RDfolder:
0.457
Sensitivity Cylofold:
0.657
RDfolder:
0.402
Positive Predictive Value Cylofold:
0.717
RDfolder:
0.543
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.72523032126e-08
|
11
CentroidHomfold‑LAST vs RDfolder
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.697
RDfolder:
0.515
Sensitivity CentroidHomfold‑LAST:
0.641
RDfolder:
0.455
Positive Predictive Value CentroidHomfold‑LAST:
0.771
RDfolder:
0.603
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
10
RNASLOpt vs RDfolder
Matthews Correlation Coefficient RNASLOpt:
0.686
RDfolder:
0.491
Sensitivity RNASLOpt:
0.638
RDfolder:
0.443
Positive Predictive Value RNASLOpt:
0.752
RDfolder:
0.566
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.21584974784e-08
|
25
McQFold vs RDfolder
Matthews Correlation Coefficient McQFold:
0.714
RDfolder:
0.569
Sensitivity McQFold:
0.692
RDfolder:
0.510
Positive Predictive Value McQFold:
0.749
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
13
ProbKnot vs RDfolder
Matthews Correlation Coefficient ProbKnot:
0.609
RDfolder:
0.513
Sensitivity ProbKnot:
0.619
RDfolder:
0.455
Positive Predictive Value ProbKnot:
0.616
RDfolder:
0.600
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
25
UNAFold vs RDfolder
Matthews Correlation Coefficient UNAFold:
0.656
RDfolder:
0.569
Sensitivity UNAFold:
0.649
RDfolder:
0.510
Positive Predictive Value UNAFold:
0.678
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
25
HotKnots vs RDfolder
Matthews Correlation Coefficient HotKnots:
0.688
RDfolder:
0.569
Sensitivity HotKnots:
0.690
RDfolder:
0.510
Positive Predictive Value HotKnots:
0.698
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
25
RNAshapes vs RDfolder
Matthews Correlation Coefficient RNAshapes:
0.657
RDfolder:
0.569
Sensitivity RNAshapes:
0.639
RDfolder:
0.510
Positive Predictive Value RNAshapes:
0.689
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
25
RNAfold vs RDfolder
Matthews Correlation Coefficient RNAfold:
0.619
RDfolder:
0.569
Sensitivity RNAfold:
0.614
RDfolder:
0.510
Positive Predictive Value RNAfold:
0.641
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
18
Afold vs RDfolder
Matthews Correlation Coefficient Afold:
0.651
RDfolder:
0.583
Sensitivity Afold:
0.645
RDfolder:
0.528
Positive Predictive Value Afold:
0.672
RDfolder:
0.663
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.02344513449e-08
|
12
RSpredict(20) vs RDfolder
Matthews Correlation Coefficient RSpredict(20):
0.760
RDfolder:
0.641
Sensitivity RSpredict(20):
0.678
RDfolder:
0.585
Positive Predictive Value RSpredict(20):
0.863
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
5
Multilign(seed) vs RDfolder
Matthews Correlation Coefficient Multilign(seed):
0.704
RDfolder:
0.403
Sensitivity Multilign(seed):
0.654
RDfolder:
0.353
Positive Predictive Value Multilign(seed):
0.770
RDfolder:
0.485
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
25
RNAsubopt vs RDfolder
Matthews Correlation Coefficient RNAsubopt:
0.640
RDfolder:
0.569
Sensitivity RNAsubopt:
0.635
RDfolder:
0.510
Positive Predictive Value RNAsubopt:
0.660
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
14
Fold vs RDfolder
Matthews Correlation Coefficient Fold:
0.575
RDfolder:
0.510
Sensitivity Fold:
0.572
RDfolder:
0.455
Positive Predictive Value Fold:
0.595
RDfolder:
0.592
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 3.415269236e-08
|
25
Vsfold4 vs RDfolder
Matthews Correlation Coefficient Vsfold4:
0.654
RDfolder:
0.569
Sensitivity Vsfold4:
0.620
RDfolder:
0.510
Positive Predictive Value Vsfold4:
0.705
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
6
RNASampler(seed) vs RDfolder
Matthews Correlation Coefficient RNASampler(seed):
0.688
RDfolder:
0.515
Sensitivity RNASampler(seed):
0.541
RDfolder:
0.446
Positive Predictive Value RNASampler(seed):
0.885
RDfolder:
0.614
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
7
Multilign(20) vs RDfolder
Matthews Correlation Coefficient Multilign(20):
0.707
RDfolder:
0.608
Sensitivity Multilign(20):
0.684
RDfolder:
0.533
Positive Predictive Value Multilign(20):
0.743
RDfolder:
0.711
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
Mastr(20) vs RDfolder
Matthews Correlation Coefficient Mastr(20):
0.744
RDfolder:
0.641
Sensitivity Mastr(20):
0.667
RDfolder:
0.585
Positive Predictive Value Mastr(20):
0.841
RDfolder:
0.718
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
11
Murlet(seed) vs RDfolder
Matthews Correlation Coefficient Murlet(seed):
0.567
RDfolder:
0.548
Sensitivity Murlet(seed):
0.409
RDfolder:
0.483
Positive Predictive Value Murlet(seed):
0.803
RDfolder:
0.640
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.59472650156e-07
|
25
Vsfold5 vs RDfolder
Matthews Correlation Coefficient Vsfold5:
0.595
RDfolder:
0.569
Sensitivity Vsfold5:
0.576
RDfolder:
0.510
Positive Predictive Value Vsfold5:
0.632
RDfolder:
0.653
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.55261613711e-07
|
17
Alterna vs RDfolder
Matthews Correlation Coefficient Alterna:
0.647
RDfolder:
0.566
Sensitivity Alterna:
0.636
RDfolder:
0.503
Positive Predictive Value Alterna:
0.674
RDfolder:
0.657
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.1413769576e-08
|
|
+
RDfolder vs MCFold
Matthews Correlation Coefficient RDfolder:
0.610
MCFold:
0.516
Sensitivity RDfolder:
0.542
MCFold:
0.547
Positive Predictive Value RDfolder:
0.703
MCFold:
0.508
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
-
RNAwolf vs RDfolder
Matthews Correlation Coefficient RNAwolf:
0.555
RDfolder:
0.521
Sensitivity RNAwolf:
0.546
RDfolder:
0.458
Positive Predictive Value RNAwolf:
0.583
RDfolder:
0.612
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.02430207705e-07
|
+
RDfolder vs RSpredict(seed)
Matthews Correlation Coefficient RDfolder:
0.594
RSpredict(seed):
0.409
Sensitivity RDfolder:
0.544
RSpredict(seed):
0.257
Positive Predictive Value RDfolder:
0.666
RSpredict(seed):
0.671
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
+
RDfolder vs Carnac(seed)
Matthews Correlation Coefficient RDfolder:
0.548
Carnac(seed):
0.121
Sensitivity RDfolder:
0.483
Carnac(seed):
0.015
Positive Predictive Value RDfolder:
0.640
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.01312059156e-09
|
?
NanoFolder vs RDfolder
Matthews Correlation Coefficient NanoFolder:
0.483
RDfolder:
0.470
Sensitivity NanoFolder:
0.558
RDfolder:
0.435
Positive Predictive Value NanoFolder:
0.440
RDfolder:
0.531
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
RDfolder vs PPfold(seed)
Matthews Correlation Coefficient RDfolder:
0.498
PPfold(seed):
0.146
Sensitivity RDfolder:
0.443
PPfold(seed):
0.030
Positive Predictive Value RDfolder:
0.581
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
RDfolder vs CMfinder(seed)
Matthews Correlation Coefficient RDfolder:
N/A
CMfinder(seed):
N/A
Sensitivity RDfolder:
N/A
CMfinder(seed):
N/A
Positive Predictive Value RDfolder:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RDfolder vs PETfold_2.0(seed)
Matthews Correlation Coefficient RDfolder:
N/A
PETfold_2.0(seed):
N/A
Sensitivity RDfolder:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RDfolder:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RDfolder vs DAFS(20)
Matthews Correlation Coefficient RDfolder:
N/A
DAFS(20):
N/A
Sensitivity RDfolder:
N/A
DAFS(20):
N/A
Positive Predictive Value RDfolder:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RDfolder vs PETfold_2.0(20)
Matthews Correlation Coefficient RDfolder:
N/A
PETfold_2.0(20):
N/A
Sensitivity RDfolder:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RDfolder:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RDfolder
Matthews Correlation Coefficient CMfinder(20):
0.826
RDfolder:
0.791
Sensitivity CMfinder(20):
0.775
RDfolder:
0.775
Positive Predictive Value CMfinder(20):
0.886
RDfolder:
0.816
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RDfolder
Matthews Correlation Coefficient CRWrnafold:
0.580
RDfolder:
0.310
Sensitivity CRWrnafold:
0.556
RDfolder:
0.256
Positive Predictive Value CRWrnafold:
0.625
RDfolder:
0.405
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
RDfolder vs DAFS(seed)
Matthews Correlation Coefficient RDfolder:
N/A
DAFS(seed):
N/A
Sensitivity RDfolder:
N/A
DAFS(seed):
N/A
Positive Predictive Value RDfolder:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RDfolder vs Mastr(seed)
Matthews Correlation Coefficient RDfolder:
0.594
Mastr(seed):
0.000
Sensitivity RDfolder:
0.544
Mastr(seed):
0.000
Positive Predictive Value RDfolder:
0.666
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
MCFold |
23
CentroidAlifold(seed) vs MCFold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.741
MCFold:
0.483
Sensitivity CentroidAlifold(seed):
0.579
MCFold:
0.530
Positive Predictive Value CentroidAlifold(seed):
0.954
MCFold:
0.452
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
18
CentroidAlifold(20) vs MCFold
Matthews Correlation Coefficient CentroidAlifold(20):
0.784
MCFold:
0.453
Sensitivity CentroidAlifold(20):
0.690
MCFold:
0.507
Positive Predictive Value CentroidAlifold(20):
0.895
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.48104284388e-08
|
12
PETfold_pre2.0(seed) vs MCFold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.772
MCFold:
0.364
Sensitivity PETfold_pre2.0(seed):
0.709
MCFold:
0.417
Positive Predictive Value PETfold_pre2.0(seed):
0.845
MCFold:
0.330
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.82627677697e-08
|
18
RNAalifold(seed) vs MCFold
Matthews Correlation Coefficient RNAalifold(seed):
0.670
MCFold:
0.471
Sensitivity RNAalifold(seed):
0.509
MCFold:
0.516
Positive Predictive Value RNAalifold(seed):
0.888
MCFold:
0.442
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
18
RNAalifold(20) vs MCFold
Matthews Correlation Coefficient RNAalifold(20):
0.743
MCFold:
0.453
Sensitivity RNAalifold(20):
0.695
MCFold:
0.507
Positive Predictive Value RNAalifold(20):
0.800
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
22
MXScarna(seed) vs MCFold
Matthews Correlation Coefficient MXScarna(seed):
0.684
MCFold:
0.480
Sensitivity MXScarna(seed):
0.623
MCFold:
0.526
Positive Predictive Value MXScarna(seed):
0.758
MCFold:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
30
CentroidFold vs MCFold
Matthews Correlation Coefficient CentroidFold:
0.695
MCFold:
0.467
Sensitivity CentroidFold:
0.669
MCFold:
0.512
Positive Predictive Value CentroidFold:
0.730
MCFold:
0.439
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
PPfold(20) vs MCFold
Matthews Correlation Coefficient PPfold(20):
0.641
MCFold:
0.409
Sensitivity PPfold(20):
0.587
MCFold:
0.470
Positive Predictive Value PPfold(20):
0.707
MCFold:
0.367
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
11
TurboFold(20) vs MCFold
Matthews Correlation Coefficient TurboFold(20):
0.633
MCFold:
0.409
Sensitivity TurboFold(20):
0.635
MCFold:
0.470
Positive Predictive Value TurboFold(20):
0.638
MCFold:
0.367
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.79651608537e-09
|
18
RNASampler(20) vs MCFold
Matthews Correlation Coefficient RNASampler(20):
0.724
MCFold:
0.453
Sensitivity RNASampler(20):
0.676
MCFold:
0.507
Positive Predictive Value RNASampler(20):
0.780
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
18
MXScarna(20) vs MCFold
Matthews Correlation Coefficient MXScarna(20):
0.691
MCFold:
0.453
Sensitivity MXScarna(20):
0.652
MCFold:
0.507
Positive Predictive Value MXScarna(20):
0.739
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
17
ContextFold vs MCFold
Matthews Correlation Coefficient ContextFold:
0.564
MCFold:
0.370
Sensitivity ContextFold:
0.541
MCFold:
0.421
Positive Predictive Value ContextFold:
0.598
MCFold:
0.338
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
19
IPknot vs MCFold
Matthews Correlation Coefficient IPknot:
0.592
MCFold:
0.404
Sensitivity IPknot:
0.566
MCFold:
0.453
Positive Predictive Value IPknot:
0.628
MCFold:
0.374
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 1.26497248087e-08
|
33
Contrafold vs MCFold
Matthews Correlation Coefficient Contrafold:
0.639
MCFold:
0.465
Sensitivity Contrafold:
0.646
MCFold:
0.510
Positive Predictive Value Contrafold:
0.643
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
18
Carnac(20) vs MCFold
Matthews Correlation Coefficient Carnac(20):
0.683
MCFold:
0.453
Sensitivity Carnac(20):
0.510
MCFold:
0.507
Positive Predictive Value Carnac(20):
0.922
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.86595104665e-08
|
18
Murlet(20) vs MCFold
Matthews Correlation Coefficient Murlet(20):
0.640
MCFold:
0.453
Sensitivity Murlet(20):
0.569
MCFold:
0.507
Positive Predictive Value Murlet(20):
0.726
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.57237423209e-08
|
9
PETfold_pre2.0(20) vs MCFold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.581
MCFold:
0.352
Sensitivity PETfold_pre2.0(20):
0.559
MCFold:
0.418
Positive Predictive Value PETfold_pre2.0(20):
0.611
MCFold:
0.307
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
33
Sfold vs MCFold
Matthews Correlation Coefficient Sfold:
0.620
MCFold:
0.465
Sensitivity Sfold:
0.593
MCFold:
0.510
Positive Predictive Value Sfold:
0.658
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
33
Pknots vs MCFold
Matthews Correlation Coefficient Pknots:
0.616
MCFold:
0.465
Sensitivity Pknots:
0.651
MCFold:
0.510
Positive Predictive Value Pknots:
0.593
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
28
MaxExpect vs MCFold
Matthews Correlation Coefficient MaxExpect:
0.571
MCFold:
0.436
Sensitivity MaxExpect:
0.573
MCFold:
0.482
Positive Predictive Value MaxExpect:
0.580
MCFold:
0.408
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
11
TurboFold(seed) vs MCFold
Matthews Correlation Coefficient TurboFold(seed):
0.556
MCFold:
0.379
Sensitivity TurboFold(seed):
0.551
MCFold:
0.428
Positive Predictive Value TurboFold(seed):
0.570
MCFold:
0.348
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
33
PknotsRG vs MCFold
Matthews Correlation Coefficient PknotsRG:
0.613
MCFold:
0.465
Sensitivity PknotsRG:
0.644
MCFold:
0.510
Positive Predictive Value PknotsRG:
0.593
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
15
Cylofold vs MCFold
Matthews Correlation Coefficient Cylofold:
0.678
MCFold:
0.512
Sensitivity Cylofold:
0.659
MCFold:
0.543
Positive Predictive Value Cylofold:
0.706
MCFold:
0.497
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.30549897711e-08
|
17
CentroidHomfold‑LAST vs MCFold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.523
MCFold:
0.414
Sensitivity CentroidHomfold‑LAST:
0.520
MCFold:
0.462
Positive Predictive Value CentroidHomfold‑LAST:
0.539
MCFold:
0.385
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
17
RNASLOpt vs MCFold
Matthews Correlation Coefficient RNASLOpt:
0.509
MCFold:
0.370
Sensitivity RNASLOpt:
0.516
MCFold:
0.421
Positive Predictive Value RNASLOpt:
0.513
MCFold:
0.338
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
33
McQFold vs MCFold
Matthews Correlation Coefficient McQFold:
0.662
MCFold:
0.465
Sensitivity McQFold:
0.669
MCFold:
0.510
Positive Predictive Value McQFold:
0.663
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
22
ProbKnot vs MCFold
Matthews Correlation Coefficient ProbKnot:
0.511
MCFold:
0.446
Sensitivity ProbKnot:
0.550
MCFold:
0.498
Positive Predictive Value ProbKnot:
0.486
MCFold:
0.411
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
33
UNAFold vs MCFold
Matthews Correlation Coefficient UNAFold:
0.583
MCFold:
0.465
Sensitivity UNAFold:
0.601
MCFold:
0.510
Positive Predictive Value UNAFold:
0.577
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
33
HotKnots vs MCFold
Matthews Correlation Coefficient HotKnots:
0.576
MCFold:
0.465
Sensitivity HotKnots:
0.613
MCFold:
0.510
Positive Predictive Value HotKnots:
0.553
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
33
RNAshapes vs MCFold
Matthews Correlation Coefficient RNAshapes:
0.584
MCFold:
0.465
Sensitivity RNAshapes:
0.599
MCFold:
0.510
Positive Predictive Value RNAshapes:
0.581
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
33
RNAfold vs MCFold
Matthews Correlation Coefficient RNAfold:
0.582
MCFold:
0.465
Sensitivity RNAfold:
0.601
MCFold:
0.510
Positive Predictive Value RNAfold:
0.574
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
Afold vs MCFold
Matthews Correlation Coefficient Afold:
0.559
MCFold:
0.472
Sensitivity Afold:
0.582
MCFold:
0.520
Positive Predictive Value Afold:
0.549
MCFold:
0.444
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
18
RSpredict(20) vs MCFold
Matthews Correlation Coefficient RSpredict(20):
0.622
MCFold:
0.453
Sensitivity RSpredict(20):
0.595
MCFold:
0.507
Positive Predictive Value RSpredict(20):
0.658
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
7
Multilign(seed) vs MCFold
Matthews Correlation Coefficient Multilign(seed):
0.528
MCFold:
0.423
Sensitivity Multilign(seed):
0.479
MCFold:
0.455
Positive Predictive Value Multilign(seed):
0.593
MCFold:
0.406
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
33
RNAsubopt vs MCFold
Matthews Correlation Coefficient RNAsubopt:
0.547
MCFold:
0.465
Sensitivity RNAsubopt:
0.571
MCFold:
0.510
Positive Predictive Value RNAsubopt:
0.536
MCFold:
0.438
Number of pairs reference - predicted secondary structure: 33
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
22
Fold vs MCFold
Matthews Correlation Coefficient Fold:
0.449
MCFold:
0.446
Sensitivity Fold:
0.483
MCFold:
0.498
Positive Predictive Value Fold:
0.429
MCFold:
0.411
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 0.000918214104114
|
31
Vsfold4 vs MCFold
Matthews Correlation Coefficient Vsfold4:
0.567
MCFold:
0.489
Sensitivity Vsfold4:
0.552
MCFold:
0.536
Positive Predictive Value Vsfold4:
0.594
MCFold:
0.460
Number of pairs reference - predicted secondary structure: 31
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
11
RNASampler(seed) vs MCFold
Matthews Correlation Coefficient RNASampler(seed):
0.562
MCFold:
0.449
Sensitivity RNASampler(seed):
0.486
MCFold:
0.514
Positive Predictive Value RNASampler(seed):
0.658
MCFold:
0.401
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.70887622364e-08
|
10
Multilign(20) vs MCFold
Matthews Correlation Coefficient Multilign(20):
0.508
MCFold:
0.424
Sensitivity Multilign(20):
0.527
MCFold:
0.488
Positive Predictive Value Multilign(20):
0.500
MCFold:
0.381
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.20383511129e-08
|
18
Mastr(20) vs MCFold
Matthews Correlation Coefficient Mastr(20):
0.591
MCFold:
0.453
Sensitivity Mastr(20):
0.405
MCFold:
0.507
Positive Predictive Value Mastr(20):
0.872
MCFold:
0.417
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.39090039918e-08
|
18
Murlet(seed) vs MCFold
Matthews Correlation Coefficient Murlet(seed):
0.529
MCFold:
0.471
Sensitivity Murlet(seed):
0.352
MCFold:
0.516
Positive Predictive Value Murlet(seed):
0.806
MCFold:
0.442
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.12160100812e-08
|
32
Vsfold5 vs MCFold
Matthews Correlation Coefficient Vsfold5:
0.551
MCFold:
0.472
Sensitivity Vsfold5:
0.556
MCFold:
0.518
Positive Predictive Value Vsfold5:
0.559
MCFold:
0.446
Number of pairs reference - predicted secondary structure: 32
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
16
Alterna vs MCFold
Matthews Correlation Coefficient Alterna:
0.649
MCFold:
0.521
Sensitivity Alterna:
0.636
MCFold:
0.548
Positive Predictive Value Alterna:
0.678
MCFold:
0.516
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.9966815982e-08
|
22
RDfolder vs MCFold
Matthews Correlation Coefficient RDfolder:
0.610
MCFold:
0.516
Sensitivity RDfolder:
0.542
MCFold:
0.547
Positive Predictive Value RDfolder:
0.703
MCFold:
0.508
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
|
=
RNAwolf vs MCFold
Matthews Correlation Coefficient RNAwolf:
0.412
MCFold:
0.404
Sensitivity RNAwolf:
0.431
MCFold:
0.453
Positive Predictive Value RNAwolf:
0.409
MCFold:
0.374
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.00169878283304
|
+
MCFold vs RSpredict(seed)
Matthews Correlation Coefficient MCFold:
0.483
RSpredict(seed):
0.289
Sensitivity MCFold:
0.530
RSpredict(seed):
0.157
Positive Predictive Value MCFold:
0.452
RSpredict(seed):
0.548
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
+
MCFold vs Carnac(seed)
Matthews Correlation Coefficient MCFold:
0.471
Carnac(seed):
0.228
Sensitivity MCFold:
0.516
Carnac(seed):
0.053
Positive Predictive Value MCFold:
0.442
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.30280588002e-08
|
-
NanoFolder vs MCFold
Matthews Correlation Coefficient NanoFolder:
0.444
MCFold:
0.375
Sensitivity NanoFolder:
0.585
MCFold:
0.441
Positive Predictive Value NanoFolder:
0.348
MCFold:
0.332
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
+
MCFold vs PPfold(seed)
Matthews Correlation Coefficient MCFold:
0.407
PPfold(seed):
0.232
Sensitivity MCFold:
0.457
PPfold(seed):
0.087
Positive Predictive Value MCFold:
0.375
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
?
CMfinder(seed) vs MCFold
Matthews Correlation Coefficient CMfinder(seed):
N/A
MCFold:
N/A
Sensitivity CMfinder(seed):
N/A
MCFold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs MCFold
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
MCFold:
N/A
Sensitivity PETfold_2.0(seed):
N/A
MCFold:
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
MCFold vs DAFS(20)
Matthews Correlation Coefficient MCFold:
N/A
DAFS(20):
N/A
Sensitivity MCFold:
N/A
DAFS(20):
N/A
Positive Predictive Value MCFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs MCFold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MCFold:
N/A
Sensitivity PETfold_2.0(20):
N/A
MCFold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs MCFold
Matthews Correlation Coefficient CMfinder(20):
0.580
MCFold:
0.358
Sensitivity CMfinder(20):
0.500
MCFold:
0.439
Positive Predictive Value CMfinder(20):
0.681
MCFold:
0.303
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs MCFold
Matthews Correlation Coefficient CRWrnafold:
0.459
MCFold:
0.434
Sensitivity CRWrnafold:
0.477
MCFold:
0.469
Positive Predictive Value CRWrnafold:
0.456
MCFold:
0.418
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs MCFold
Matthews Correlation Coefficient DAFS(seed):
N/A
MCFold:
N/A
Sensitivity DAFS(seed):
N/A
MCFold:
N/A
Positive Predictive Value DAFS(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
MCFold vs Mastr(seed)
Matthews Correlation Coefficient MCFold:
0.483
Mastr(seed):
0.044
Sensitivity MCFold:
0.530
Mastr(seed):
0.006
Positive Predictive Value MCFold:
0.452
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
RNAwolf |
18
CentroidAlifold(seed) vs RNAwolf
Matthews Correlation Coefficient CentroidAlifold(seed):
0.811
RNAwolf:
0.506
Sensitivity CentroidAlifold(seed):
0.711
RNAwolf:
0.509
Positive Predictive Value CentroidAlifold(seed):
0.927
RNAwolf:
0.504
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
12
CentroidAlifold(20) vs RNAwolf
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
RNAwolf:
0.396
Sensitivity CentroidAlifold(20):
0.598
RNAwolf:
0.425
Positive Predictive Value CentroidAlifold(20):
0.852
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.66062906821e-08
|
16
PETfold_pre2.0(seed) vs RNAwolf
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.831
RNAwolf:
0.491
Sensitivity PETfold_pre2.0(seed):
0.802
RNAwolf:
0.496
Positive Predictive Value PETfold_pre2.0(seed):
0.863
RNAwolf:
0.488
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.80908287419e-08
|
16
RNAalifold(seed) vs RNAwolf
Matthews Correlation Coefficient RNAalifold(seed):
0.764
RNAwolf:
0.494
Sensitivity RNAalifold(seed):
0.667
RNAwolf:
0.497
Positive Predictive Value RNAalifold(seed):
0.876
RNAwolf:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
12
RNAalifold(20) vs RNAwolf
Matthews Correlation Coefficient RNAalifold(20):
0.664
RNAwolf:
0.396
Sensitivity RNAalifold(20):
0.618
RNAwolf:
0.425
Positive Predictive Value RNAalifold(20):
0.721
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
17
MXScarna(seed) vs RNAwolf
Matthews Correlation Coefficient MXScarna(seed):
0.732
RNAwolf:
0.495
Sensitivity MXScarna(seed):
0.692
RNAwolf:
0.499
Positive Predictive Value MXScarna(seed):
0.776
RNAwolf:
0.494
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
24
CentroidFold vs RNAwolf
Matthews Correlation Coefficient CentroidFold:
0.564
RNAwolf:
0.406
Sensitivity CentroidFold:
0.537
RNAwolf:
0.415
Positive Predictive Value CentroidFold:
0.593
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
12
PPfold(20) vs RNAwolf
Matthews Correlation Coefficient PPfold(20):
0.668
RNAwolf:
0.396
Sensitivity PPfold(20):
0.614
RNAwolf:
0.425
Positive Predictive Value PPfold(20):
0.733
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.26346675981e-08
|
12
TurboFold(20) vs RNAwolf
Matthews Correlation Coefficient TurboFold(20):
0.636
RNAwolf:
0.396
Sensitivity TurboFold(20):
0.629
RNAwolf:
0.425
Positive Predictive Value TurboFold(20):
0.649
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
12
RNASampler(20) vs RNAwolf
Matthews Correlation Coefficient RNASampler(20):
0.628
RNAwolf:
0.396
Sensitivity RNASampler(20):
0.583
RNAwolf:
0.425
Positive Predictive Value RNASampler(20):
0.683
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.5281770229e-09
|
12
MXScarna(20) vs RNAwolf
Matthews Correlation Coefficient MXScarna(20):
0.600
RNAwolf:
0.396
Sensitivity MXScarna(20):
0.568
RNAwolf:
0.425
Positive Predictive Value MXScarna(20):
0.642
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
22
ContextFold vs RNAwolf
Matthews Correlation Coefficient ContextFold:
0.596
RNAwolf:
0.392
Sensitivity ContextFold:
0.588
RNAwolf:
0.402
Positive Predictive Value ContextFold:
0.604
RNAwolf:
0.385
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
24
IPknot vs RNAwolf
Matthews Correlation Coefficient IPknot:
0.600
RNAwolf:
0.406
Sensitivity IPknot:
0.560
RNAwolf:
0.415
Positive Predictive Value IPknot:
0.644
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
24
Contrafold vs RNAwolf
Matthews Correlation Coefficient Contrafold:
0.546
RNAwolf:
0.406
Sensitivity Contrafold:
0.555
RNAwolf:
0.415
Positive Predictive Value Contrafold:
0.539
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
12
Carnac(20) vs RNAwolf
Matthews Correlation Coefficient Carnac(20):
0.585
RNAwolf:
0.396
Sensitivity Carnac(20):
0.413
RNAwolf:
0.425
Positive Predictive Value Carnac(20):
0.836
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
12
Murlet(20) vs RNAwolf
Matthews Correlation Coefficient Murlet(20):
0.576
RNAwolf:
0.396
Sensitivity Murlet(20):
0.521
RNAwolf:
0.425
Positive Predictive Value Murlet(20):
0.646
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
10
PETfold_pre2.0(20) vs RNAwolf
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
RNAwolf:
0.323
Sensitivity PETfold_pre2.0(20):
0.597
RNAwolf:
0.354
Positive Predictive Value PETfold_pre2.0(20):
0.654
RNAwolf:
0.305
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.24019667966e-08
|
24
Sfold vs RNAwolf
Matthews Correlation Coefficient Sfold:
0.513
RNAwolf:
0.406
Sensitivity Sfold:
0.517
RNAwolf:
0.415
Positive Predictive Value Sfold:
0.509
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 4.98172311752e-08
|
22
Pknots vs RNAwolf
Matthews Correlation Coefficient Pknots:
0.597
RNAwolf:
0.449
Sensitivity Pknots:
0.632
RNAwolf:
0.461
Positive Predictive Value Pknots:
0.574
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
24
MaxExpect vs RNAwolf
Matthews Correlation Coefficient MaxExpect:
0.511
RNAwolf:
0.406
Sensitivity MaxExpect:
0.525
RNAwolf:
0.415
Positive Predictive Value MaxExpect:
0.500
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
13
TurboFold(seed) vs RNAwolf
Matthews Correlation Coefficient TurboFold(seed):
0.610
RNAwolf:
0.379
Sensitivity TurboFold(seed):
0.598
RNAwolf:
0.395
Positive Predictive Value TurboFold(seed):
0.630
RNAwolf:
0.377
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.91441904741e-08
|
23
PknotsRG vs RNAwolf
Matthews Correlation Coefficient PknotsRG:
0.492
RNAwolf:
0.332
Sensitivity PknotsRG:
0.531
RNAwolf:
0.344
Positive Predictive Value PknotsRG:
0.458
RNAwolf:
0.323
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
14
Cylofold vs RNAwolf
Matthews Correlation Coefficient Cylofold:
0.639
RNAwolf:
0.468
Sensitivity Cylofold:
0.615
RNAwolf:
0.455
Positive Predictive Value Cylofold:
0.678
RNAwolf:
0.502
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
19
CentroidHomfold‑LAST vs RNAwolf
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.577
RNAwolf:
0.466
Sensitivity CentroidHomfold‑LAST:
0.565
RNAwolf:
0.471
Positive Predictive Value CentroidHomfold‑LAST:
0.601
RNAwolf:
0.476
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
20
RNASLOpt vs RNAwolf
Matthews Correlation Coefficient RNASLOpt:
0.558
RNAwolf:
0.416
Sensitivity RNASLOpt:
0.555
RNAwolf:
0.430
Positive Predictive Value RNASLOpt:
0.572
RNAwolf:
0.417
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
24
McQFold vs RNAwolf
Matthews Correlation Coefficient McQFold:
0.463
RNAwolf:
0.406
Sensitivity McQFold:
0.478
RNAwolf:
0.415
Positive Predictive Value McQFold:
0.449
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
24
ProbKnot vs RNAwolf
Matthews Correlation Coefficient ProbKnot:
0.508
RNAwolf:
0.406
Sensitivity ProbKnot:
0.530
RNAwolf:
0.415
Positive Predictive Value ProbKnot:
0.488
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
24
UNAFold vs RNAwolf
Matthews Correlation Coefficient UNAFold:
0.486
RNAwolf:
0.406
Sensitivity UNAFold:
0.511
RNAwolf:
0.415
Positive Predictive Value UNAFold:
0.463
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
22
HotKnots vs RNAwolf
Matthews Correlation Coefficient HotKnots:
0.543
RNAwolf:
0.449
Sensitivity HotKnots:
0.587
RNAwolf:
0.461
Positive Predictive Value HotKnots:
0.515
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
22
RNAshapes vs RNAwolf
Matthews Correlation Coefficient RNAshapes:
0.542
RNAwolf:
0.449
Sensitivity RNAshapes:
0.563
RNAwolf:
0.461
Positive Predictive Value RNAshapes:
0.533
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
24
RNAfold vs RNAwolf
Matthews Correlation Coefficient RNAfold:
0.488
RNAwolf:
0.406
Sensitivity RNAfold:
0.516
RNAwolf:
0.415
Positive Predictive Value RNAfold:
0.463
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
11
Afold vs RNAwolf
Matthews Correlation Coefficient Afold:
0.394
RNAwolf:
0.281
Sensitivity Afold:
0.429
RNAwolf:
0.293
Positive Predictive Value Afold:
0.363
RNAwolf:
0.271
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.87872347734e-08
|
12
RSpredict(20) vs RNAwolf
Matthews Correlation Coefficient RSpredict(20):
0.515
RNAwolf:
0.396
Sensitivity RSpredict(20):
0.486
RNAwolf:
0.425
Positive Predictive Value RSpredict(20):
0.555
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
10
Multilign(seed) vs RNAwolf
Matthews Correlation Coefficient Multilign(seed):
0.658
RNAwolf:
0.452
Sensitivity Multilign(seed):
0.608
RNAwolf:
0.458
Positive Predictive Value Multilign(seed):
0.721
RNAwolf:
0.461
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
22
RNAsubopt vs RNAwolf
Matthews Correlation Coefficient RNAsubopt:
0.540
RNAwolf:
0.449
Sensitivity RNAsubopt:
0.571
RNAwolf:
0.461
Positive Predictive Value RNAsubopt:
0.522
RNAwolf:
0.451
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
24
Fold vs RNAwolf
Matthews Correlation Coefficient Fold:
0.459
RNAwolf:
0.406
Sensitivity Fold:
0.489
RNAwolf:
0.415
Positive Predictive Value Fold:
0.433
RNAwolf:
0.399
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
19
Vsfold4 vs RNAwolf
Matthews Correlation Coefficient Vsfold4:
0.504
RNAwolf:
0.488
Sensitivity Vsfold4:
0.497
RNAwolf:
0.497
Positive Predictive Value Vsfold4:
0.524
RNAwolf:
0.492
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 6.52442735156e-07
|
9
RNASampler(seed) vs RNAwolf
Matthews Correlation Coefficient RNASampler(seed):
0.497
RNAwolf:
0.424
Sensitivity RNASampler(seed):
0.412
RNAwolf:
0.464
Positive Predictive Value RNASampler(seed):
0.608
RNAwolf:
0.397
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
Multilign(20) vs RNAwolf
Matthews Correlation Coefficient Multilign(20):
0.517
RNAwolf:
0.446
Sensitivity Multilign(20):
0.530
RNAwolf:
0.465
Positive Predictive Value Multilign(20):
0.515
RNAwolf:
0.440
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.27752322258e-08
|
12
Mastr(20) vs RNAwolf
Matthews Correlation Coefficient Mastr(20):
0.544
RNAwolf:
0.396
Sensitivity Mastr(20):
0.363
RNAwolf:
0.425
Positive Predictive Value Mastr(20):
0.825
RNAwolf:
0.381
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.28439804626e-08
|
15
Murlet(seed) vs RNAwolf
Matthews Correlation Coefficient Murlet(seed):
0.493
RNAwolf:
0.418
Sensitivity Murlet(seed):
0.320
RNAwolf:
0.431
Positive Predictive Value Murlet(seed):
0.769
RNAwolf:
0.420
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.08252958266e-08
|
20
Vsfold5 vs RNAwolf
Matthews Correlation Coefficient Vsfold5:
0.504
RNAwolf:
0.458
Sensitivity Vsfold5:
0.525
RNAwolf:
0.463
Positive Predictive Value Vsfold5:
0.498
RNAwolf:
0.467
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
4
RNAwolf vs Alterna
Matthews Correlation Coefficient RNAwolf:
0.583
Alterna:
0.568
Sensitivity RNAwolf:
0.585
Alterna:
0.549
Positive Predictive Value RNAwolf:
0.600
Alterna:
0.608
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
12
RNAwolf vs RDfolder
Matthews Correlation Coefficient RNAwolf:
0.555
RDfolder:
0.521
Sensitivity RNAwolf:
0.546
RDfolder:
0.458
Positive Predictive Value RNAwolf:
0.583
RDfolder:
0.612
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 3.02430207705e-07
|
19
RNAwolf vs MCFold
Matthews Correlation Coefficient RNAwolf:
0.412
MCFold:
0.404
Sensitivity RNAwolf:
0.431
MCFold:
0.453
Positive Predictive Value RNAwolf:
0.409
MCFold:
0.374
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 0.00169878283304
|
|
-
RSpredict(seed) vs RNAwolf
Matthews Correlation Coefficient RSpredict(seed):
0.570
RNAwolf:
0.506
Sensitivity RSpredict(seed):
0.458
RNAwolf:
0.509
Positive Predictive Value RSpredict(seed):
0.711
RNAwolf:
0.504
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 0.000258331514164
|
-
Carnac(seed) vs RNAwolf
Matthews Correlation Coefficient Carnac(seed):
0.556
RNAwolf:
0.494
Sensitivity Carnac(seed):
0.332
RNAwolf:
0.497
Positive Predictive Value Carnac(seed):
0.934
RNAwolf:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 4.98334164692e-07
|
+
RNAwolf vs NanoFolder
Matthews Correlation Coefficient RNAwolf:
0.452
NanoFolder:
0.406
Sensitivity RNAwolf:
0.468
NanoFolder:
0.516
Positive Predictive Value RNAwolf:
0.450
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 6.61597961434e-08
|
+
RNAwolf vs PPfold(seed)
Matthews Correlation Coefficient RNAwolf:
0.450
PPfold(seed):
0.202
Sensitivity RNAwolf:
0.463
PPfold(seed):
0.066
Positive Predictive Value RNAwolf:
0.449
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.24519439238e-08
|
?
CMfinder(seed) vs RNAwolf
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAwolf:
N/A
Sensitivity CMfinder(seed):
N/A
RNAwolf:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAwolf:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs RNAwolf
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RNAwolf:
0.811
Sensitivity PETfold_2.0(seed):
0.806
RNAwolf:
0.774
Positive Predictive Value PETfold_2.0(seed):
0.862
RNAwolf:
0.857
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RNAwolf vs DAFS(20)
Matthews Correlation Coefficient RNAwolf:
N/A
DAFS(20):
N/A
Sensitivity RNAwolf:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAwolf:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RNAwolf vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAwolf:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAwolf:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAwolf:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RNAwolf
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAwolf:
0.452
Sensitivity CMfinder(20):
0.500
RNAwolf:
0.500
Positive Predictive Value CMfinder(20):
0.681
RNAwolf:
0.419
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RNAwolf
Matthews Correlation Coefficient CRWrnafold:
0.502
RNAwolf:
0.372
Sensitivity CRWrnafold:
0.516
RNAwolf:
0.377
Positive Predictive Value CRWrnafold:
0.503
RNAwolf:
0.385
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs RNAwolf
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAwolf:
N/A
Sensitivity DAFS(seed):
N/A
RNAwolf:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAwolf:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RNAwolf vs Mastr(seed)
Matthews Correlation Coefficient RNAwolf:
0.450
Mastr(seed):
0.052
Sensitivity RNAwolf:
0.463
Mastr(seed):
0.008
Positive Predictive Value RNAwolf:
0.449
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.78993384543e-08
|
RSpredict(seed) |
30
CentroidAlifold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.781
RSpredict(seed):
0.498
Sensitivity CentroidAlifold(seed):
0.672
RSpredict(seed):
0.359
Positive Predictive Value CentroidAlifold(seed):
0.908
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
CentroidAlifold(20) vs RSpredict(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
RSpredict(seed):
0.296
Sensitivity CentroidAlifold(20):
0.664
RSpredict(seed):
0.148
Positive Predictive Value CentroidAlifold(20):
0.900
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
17
PETfold_pre2.0(seed) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.824
RSpredict(seed):
0.590
Sensitivity PETfold_pre2.0(seed):
0.789
RSpredict(seed):
0.482
Positive Predictive Value PETfold_pre2.0(seed):
0.861
RSpredict(seed):
0.723
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.48104284388e-08
|
25
RNAalifold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.728
RSpredict(seed):
0.523
Sensitivity RNAalifold(seed):
0.607
RSpredict(seed):
0.388
Positive Predictive Value RNAalifold(seed):
0.872
RSpredict(seed):
0.707
Number of pairs reference - predicted secondary structure: 25
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
RNAalifold(20) vs RSpredict(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
RSpredict(seed):
0.296
Sensitivity RNAalifold(20):
0.654
RSpredict(seed):
0.148
Positive Predictive Value RNAalifold(20):
0.826
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
29
MXScarna(seed) vs RSpredict(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.739
RSpredict(seed):
0.503
Sensitivity MXScarna(seed):
0.698
RSpredict(seed):
0.364
Positive Predictive Value MXScarna(seed):
0.784
RSpredict(seed):
0.698
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
30
CentroidFold vs RSpredict(seed)
Matthews Correlation Coefficient CentroidFold:
0.687
RSpredict(seed):
0.498
Sensitivity CentroidFold:
0.681
RSpredict(seed):
0.359
Positive Predictive Value CentroidFold:
0.694
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
12
PPfold(20) vs RSpredict(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
RSpredict(seed):
0.261
Sensitivity PPfold(20):
0.614
RSpredict(seed):
0.131
Positive Predictive Value PPfold(20):
0.733
RSpredict(seed):
0.531
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
12
TurboFold(20) vs RSpredict(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
RSpredict(seed):
0.261
Sensitivity TurboFold(20):
0.629
RSpredict(seed):
0.131
Positive Predictive Value TurboFold(20):
0.649
RSpredict(seed):
0.531
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
21
RNASampler(20) vs RSpredict(seed)
Matthews Correlation Coefficient RNASampler(20):
0.692
RSpredict(seed):
0.296
Sensitivity RNASampler(20):
0.621
RSpredict(seed):
0.148
Positive Predictive Value RNASampler(20):
0.776
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
MXScarna(20) vs RSpredict(seed)
Matthews Correlation Coefficient MXScarna(20):
0.678
RSpredict(seed):
0.296
Sensitivity MXScarna(20):
0.640
RSpredict(seed):
0.148
Positive Predictive Value MXScarna(20):
0.724
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
16
ContextFold vs RSpredict(seed)
Matthews Correlation Coefficient ContextFold:
0.766
RSpredict(seed):
0.572
Sensitivity ContextFold:
0.747
RSpredict(seed):
0.467
Positive Predictive Value ContextFold:
0.785
RSpredict(seed):
0.702
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.27388928538e-08
|
18
IPknot vs RSpredict(seed)
Matthews Correlation Coefficient IPknot:
0.700
RSpredict(seed):
0.570
Sensitivity IPknot:
0.683
RSpredict(seed):
0.458
Positive Predictive Value IPknot:
0.718
RSpredict(seed):
0.711
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.73174208038e-08
|
30
Contrafold vs RSpredict(seed)
Matthews Correlation Coefficient Contrafold:
0.659
RSpredict(seed):
0.498
Sensitivity Contrafold:
0.678
RSpredict(seed):
0.359
Positive Predictive Value Contrafold:
0.642
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
21
Carnac(20) vs RSpredict(seed)
Matthews Correlation Coefficient Carnac(20):
0.641
RSpredict(seed):
0.296
Sensitivity Carnac(20):
0.456
RSpredict(seed):
0.148
Positive Predictive Value Carnac(20):
0.908
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
21
Murlet(20) vs RSpredict(seed)
Matthews Correlation Coefficient Murlet(20):
0.625
RSpredict(seed):
0.296
Sensitivity Murlet(20):
0.530
RSpredict(seed):
0.148
Positive Predictive Value Murlet(20):
0.744
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
11
PETfold_pre2.0(20) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.718
RSpredict(seed):
0.471
Sensitivity PETfold_pre2.0(20):
0.682
RSpredict(seed):
0.321
Positive Predictive Value PETfold_pre2.0(20):
0.758
RSpredict(seed):
0.694
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.50834591464e-08
|
30
Sfold vs RSpredict(seed)
Matthews Correlation Coefficient Sfold:
0.604
RSpredict(seed):
0.498
Sensitivity Sfold:
0.600
RSpredict(seed):
0.359
Positive Predictive Value Sfold:
0.610
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
27
Pknots vs RSpredict(seed)
Matthews Correlation Coefficient Pknots:
0.659
RSpredict(seed):
0.307
Sensitivity Pknots:
0.690
RSpredict(seed):
0.170
Positive Predictive Value Pknots:
0.638
RSpredict(seed):
0.573
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
28
MaxExpect vs RSpredict(seed)
Matthews Correlation Coefficient MaxExpect:
0.598
RSpredict(seed):
0.499
Sensitivity MaxExpect:
0.614
RSpredict(seed):
0.362
Positive Predictive Value MaxExpect:
0.584
RSpredict(seed):
0.690
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
13
TurboFold(seed) vs RSpredict(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
RSpredict(seed):
0.278
Sensitivity TurboFold(seed):
0.598
RSpredict(seed):
0.152
Positive Predictive Value TurboFold(seed):
0.630
RSpredict(seed):
0.523
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 7.60513176667e-09
|
29
PknotsRG vs RSpredict(seed)
Matthews Correlation Coefficient PknotsRG:
0.610
RSpredict(seed):
0.292
Sensitivity PknotsRG:
0.653
RSpredict(seed):
0.158
Positive Predictive Value PknotsRG:
0.577
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
12
Cylofold vs RSpredict(seed)
Matthews Correlation Coefficient Cylofold:
0.677
RSpredict(seed):
0.262
Sensitivity Cylofold:
0.646
RSpredict(seed):
0.146
Positive Predictive Value Cylofold:
0.718
RSpredict(seed):
0.489
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
15
CentroidHomfold‑LAST vs RSpredict(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
RSpredict(seed):
0.240
Sensitivity CentroidHomfold‑LAST:
0.583
RSpredict(seed):
0.132
Positive Predictive Value CentroidHomfold‑LAST:
0.586
RSpredict(seed):
0.454
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.59816551561e-08
|
15
RNASLOpt vs RSpredict(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
RSpredict(seed):
0.209
Sensitivity RNASLOpt:
0.559
RSpredict(seed):
0.115
Positive Predictive Value RNASLOpt:
0.576
RSpredict(seed):
0.398
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
30
McQFold vs RSpredict(seed)
Matthews Correlation Coefficient McQFold:
0.597
RSpredict(seed):
0.498
Sensitivity McQFold:
0.614
RSpredict(seed):
0.359
Positive Predictive Value McQFold:
0.582
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
23
ProbKnot vs RSpredict(seed)
Matthews Correlation Coefficient ProbKnot:
0.580
RSpredict(seed):
0.497
Sensitivity ProbKnot:
0.608
RSpredict(seed):
0.365
Positive Predictive Value ProbKnot:
0.554
RSpredict(seed):
0.678
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
30
UNAFold vs RSpredict(seed)
Matthews Correlation Coefficient UNAFold:
0.577
RSpredict(seed):
0.498
Sensitivity UNAFold:
0.600
RSpredict(seed):
0.359
Positive Predictive Value UNAFold:
0.556
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
29
HotKnots vs RSpredict(seed)
Matthews Correlation Coefficient HotKnots:
0.575
RSpredict(seed):
0.292
Sensitivity HotKnots:
0.620
RSpredict(seed):
0.158
Positive Predictive Value HotKnots:
0.541
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
29
RNAshapes vs RSpredict(seed)
Matthews Correlation Coefficient RNAshapes:
0.579
RSpredict(seed):
0.292
Sensitivity RNAshapes:
0.606
RSpredict(seed):
0.158
Positive Predictive Value RNAshapes:
0.560
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
30
RNAfold vs RSpredict(seed)
Matthews Correlation Coefficient RNAfold:
0.581
RSpredict(seed):
0.498
Sensitivity RNAfold:
0.609
RSpredict(seed):
0.359
Positive Predictive Value RNAfold:
0.556
RSpredict(seed):
0.693
Number of pairs reference - predicted secondary structure: 30
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
16
Afold vs RSpredict(seed)
Matthews Correlation Coefficient Afold:
0.539
RSpredict(seed):
0.354
Sensitivity Afold:
0.585
RSpredict(seed):
0.210
Positive Predictive Value Afold:
0.504
RSpredict(seed):
0.604
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.07760058607e-08
|
22
RSpredict(20) vs RSpredict(seed)
Matthews Correlation Coefficient RSpredict(20):
0.613
RSpredict(seed):
0.425
Sensitivity RSpredict(20):
0.558
RSpredict(seed):
0.259
Positive Predictive Value RSpredict(20):
0.676
RSpredict(seed):
0.701
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
10
Multilign(seed) vs RSpredict(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
RSpredict(seed):
0.321
Sensitivity Multilign(seed):
0.608
RSpredict(seed):
0.188
Positive Predictive Value Multilign(seed):
0.721
RSpredict(seed):
0.563
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 7.84765843136e-09
|
29
RNAsubopt vs RSpredict(seed)
Matthews Correlation Coefficient RNAsubopt:
0.573
RSpredict(seed):
0.292
Sensitivity RNAsubopt:
0.610
RSpredict(seed):
0.158
Positive Predictive Value RNAsubopt:
0.546
RSpredict(seed):
0.551
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
23
Fold vs RSpredict(seed)
Matthews Correlation Coefficient Fold:
0.540
RSpredict(seed):
0.497
Sensitivity Fold:
0.574
RSpredict(seed):
0.365
Positive Predictive Value Fold:
0.511
RSpredict(seed):
0.678
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.59469103578e-08
|
26
Vsfold4 vs RSpredict(seed)
Matthews Correlation Coefficient Vsfold4:
0.542
RSpredict(seed):
0.293
Sensitivity Vsfold4:
0.545
RSpredict(seed):
0.159
Positive Predictive Value Vsfold4:
0.546
RSpredict(seed):
0.550
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
12
RNASampler(seed) vs RSpredict(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
RSpredict(seed):
0.356
Sensitivity RNASampler(seed):
0.472
RSpredict(seed):
0.224
Positive Predictive Value RNASampler(seed):
0.678
RSpredict(seed):
0.577
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
11
Multilign(20) vs RSpredict(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
RSpredict(seed):
0.278
Sensitivity Multilign(20):
0.530
RSpredict(seed):
0.139
Positive Predictive Value Multilign(20):
0.515
RSpredict(seed):
0.571
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
21
Mastr(20) vs RSpredict(seed)
Matthews Correlation Coefficient Mastr(20):
0.508
RSpredict(seed):
0.296
Sensitivity Mastr(20):
0.329
RSpredict(seed):
0.148
Positive Predictive Value Mastr(20):
0.793
RSpredict(seed):
0.601
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
22
Murlet(seed) vs RSpredict(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
RSpredict(seed):
0.339
Sensitivity Murlet(seed):
0.349
RSpredict(seed):
0.194
Positive Predictive Value Murlet(seed):
0.828
RSpredict(seed):
0.608
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
27
Vsfold5 vs RSpredict(seed)
Matthews Correlation Coefficient Vsfold5:
0.514
RSpredict(seed):
0.285
Sensitivity Vsfold5:
0.521
RSpredict(seed):
0.153
Positive Predictive Value Vsfold5:
0.516
RSpredict(seed):
0.542
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
10
Alterna vs RSpredict(seed)
Matthews Correlation Coefficient Alterna:
0.657
RSpredict(seed):
0.464
Sensitivity Alterna:
0.651
RSpredict(seed):
0.299
Positive Predictive Value Alterna:
0.677
RSpredict(seed):
0.742
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.25253056981e-08
|
16
RDfolder vs RSpredict(seed)
Matthews Correlation Coefficient RDfolder:
0.594
RSpredict(seed):
0.409
Sensitivity RDfolder:
0.544
RSpredict(seed):
0.257
Positive Predictive Value RDfolder:
0.666
RSpredict(seed):
0.671
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
23
MCFold vs RSpredict(seed)
Matthews Correlation Coefficient MCFold:
0.483
RSpredict(seed):
0.289
Sensitivity MCFold:
0.530
RSpredict(seed):
0.157
Positive Predictive Value MCFold:
0.452
RSpredict(seed):
0.548
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
18
RSpredict(seed) vs RNAwolf
Matthews Correlation Coefficient RSpredict(seed):
0.570
RNAwolf:
0.506
Sensitivity RSpredict(seed):
0.458
RNAwolf:
0.509
Positive Predictive Value RSpredict(seed):
0.711
RNAwolf:
0.504
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 0.000258331514164
|
|
+
RSpredict(seed) vs Carnac(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.558
Carnac(seed):
0.492
Sensitivity RSpredict(seed):
0.431
Carnac(seed):
0.259
Positive Predictive Value RSpredict(seed):
0.724
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
?
NanoFolder vs RSpredict(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
RSpredict(seed):
0.203
Sensitivity NanoFolder:
0.438
RSpredict(seed):
0.120
Positive Predictive Value NanoFolder:
0.277
RSpredict(seed):
0.359
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
+
RSpredict(seed) vs PPfold(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.261
PPfold(seed):
0.202
Sensitivity RSpredict(seed):
0.145
PPfold(seed):
0.066
Positive Predictive Value RSpredict(seed):
0.487
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
?
RSpredict(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RSpredict(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RSpredict(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RSpredict(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RSpredict(seed):
0.566
Sensitivity PETfold_2.0(seed):
0.806
RSpredict(seed):
0.355
Positive Predictive Value PETfold_2.0(seed):
0.862
RSpredict(seed):
0.917
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
RSpredict(seed) vs DAFS(20)
Matthews Correlation Coefficient RSpredict(seed):
N/A
DAFS(20):
N/A
Sensitivity RSpredict(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RSpredict(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
RSpredict(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs RSpredict(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
RSpredict(seed):
0.047
Sensitivity CMfinder(20):
0.500
RSpredict(seed):
0.020
Positive Predictive Value CMfinder(20):
0.681
RSpredict(seed):
0.125
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs RSpredict(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
RSpredict(seed):
0.178
Sensitivity CRWrnafold:
0.524
RSpredict(seed):
0.095
Positive Predictive Value CRWrnafold:
0.516
RSpredict(seed):
0.353
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
RSpredict(seed) vs DAFS(seed)
Matthews Correlation Coefficient RSpredict(seed):
N/A
DAFS(seed):
N/A
Sensitivity RSpredict(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RSpredict(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
RSpredict(seed) vs Mastr(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.292
Mastr(seed):
0.036
Sensitivity RSpredict(seed):
0.158
Mastr(seed):
0.004
Positive Predictive Value RSpredict(seed):
0.551
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
Carnac(seed) |
23
CentroidAlifold(seed) vs Carnac(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.834
Carnac(seed):
0.492
Sensitivity CentroidAlifold(seed):
0.744
Carnac(seed):
0.259
Positive Predictive Value CentroidAlifold(seed):
0.935
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
16
CentroidAlifold(20) vs Carnac(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.753
Carnac(seed):
0.000
Sensitivity CentroidAlifold(20):
0.641
Carnac(seed):
0.000
Positive Predictive Value CentroidAlifold(20):
0.890
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
14
PETfold_pre2.0(seed) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.826
Carnac(seed):
0.577
Sensitivity PETfold_pre2.0(seed):
0.794
Carnac(seed):
0.357
Positive Predictive Value PETfold_pre2.0(seed):
0.860
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
23
RNAalifold(seed) vs Carnac(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.765
Carnac(seed):
0.492
Sensitivity RNAalifold(seed):
0.658
Carnac(seed):
0.259
Positive Predictive Value RNAalifold(seed):
0.891
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
16
RNAalifold(20) vs Carnac(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.705
Carnac(seed):
0.000
Sensitivity RNAalifold(20):
0.636
Carnac(seed):
0.000
Positive Predictive Value RNAalifold(20):
0.788
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
23
MXScarna(seed) vs Carnac(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.741
Carnac(seed):
0.492
Sensitivity MXScarna(seed):
0.698
Carnac(seed):
0.259
Positive Predictive Value MXScarna(seed):
0.787
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
23
CentroidFold vs Carnac(seed)
Matthews Correlation Coefficient CentroidFold:
0.724
Carnac(seed):
0.492
Sensitivity CentroidFold:
0.701
Carnac(seed):
0.259
Positive Predictive Value CentroidFold:
0.748
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
10
PPfold(20) vs Carnac(seed)
Matthews Correlation Coefficient PPfold(20):
0.618
Carnac(seed):
0.000
Sensitivity PPfold(20):
0.557
Carnac(seed):
0.000
Positive Predictive Value PPfold(20):
0.693
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.19192530585e-08
|
10
TurboFold(20) vs Carnac(seed)
Matthews Correlation Coefficient TurboFold(20):
0.601
Carnac(seed):
0.000
Sensitivity TurboFold(20):
0.589
Carnac(seed):
0.000
Positive Predictive Value TurboFold(20):
0.620
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 8.18166149643e-09
|
16
RNASampler(20) vs Carnac(seed)
Matthews Correlation Coefficient RNASampler(20):
0.675
Carnac(seed):
0.000
Sensitivity RNASampler(20):
0.606
Carnac(seed):
0.000
Positive Predictive Value RNASampler(20):
0.759
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.18846395401e-08
|
16
MXScarna(20) vs Carnac(seed)
Matthews Correlation Coefficient MXScarna(20):
0.659
Carnac(seed):
0.000
Sensitivity MXScarna(20):
0.619
Carnac(seed):
0.000
Positive Predictive Value MXScarna(20):
0.708
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 1.55268413083e-08
|
14
ContextFold vs Carnac(seed)
Matthews Correlation Coefficient ContextFold:
0.759
Carnac(seed):
0.577
Sensitivity ContextFold:
0.740
Carnac(seed):
0.357
Positive Predictive Value ContextFold:
0.780
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.18141491686e-08
|
16
IPknot vs Carnac(seed)
Matthews Correlation Coefficient IPknot:
0.709
Carnac(seed):
0.556
Sensitivity IPknot:
0.690
Carnac(seed):
0.332
Positive Predictive Value IPknot:
0.729
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
23
Contrafold vs Carnac(seed)
Matthews Correlation Coefficient Contrafold:
0.709
Carnac(seed):
0.492
Sensitivity Contrafold:
0.713
Carnac(seed):
0.259
Positive Predictive Value Contrafold:
0.707
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
16
Carnac(20) vs Carnac(seed)
Matthews Correlation Coefficient Carnac(20):
0.629
Carnac(seed):
0.000
Sensitivity Carnac(20):
0.426
Carnac(seed):
0.000
Positive Predictive Value Carnac(20):
0.935
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
16
Murlet(20) vs Carnac(seed)
Matthews Correlation Coefficient Murlet(20):
0.619
Carnac(seed):
0.000
Sensitivity Murlet(20):
0.527
Carnac(seed):
0.000
Positive Predictive Value Murlet(20):
0.734
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
8
PETfold_pre2.0(20) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.547
Carnac(seed):
0.000
Sensitivity PETfold_pre2.0(20):
0.518
Carnac(seed):
0.000
Positive Predictive Value PETfold_pre2.0(20):
0.585
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
23
Sfold vs Carnac(seed)
Matthews Correlation Coefficient Sfold:
0.644
Carnac(seed):
0.492
Sensitivity Sfold:
0.630
Carnac(seed):
0.259
Positive Predictive Value Sfold:
0.660
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
22
Pknots vs Carnac(seed)
Matthews Correlation Coefficient Pknots:
0.641
Carnac(seed):
0.200
Sensitivity Pknots:
0.673
Carnac(seed):
0.040
Positive Predictive Value Pknots:
0.620
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
22
MaxExpect vs Carnac(seed)
Matthews Correlation Coefficient MaxExpect:
0.634
Carnac(seed):
0.499
Sensitivity MaxExpect:
0.638
Carnac(seed):
0.267
Positive Predictive Value MaxExpect:
0.632
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
13
TurboFold(seed) vs Carnac(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Carnac(seed):
0.277
Sensitivity TurboFold(seed):
0.598
Carnac(seed):
0.078
Positive Predictive Value TurboFold(seed):
0.630
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.43692248862e-08
|
22
PknotsRG vs Carnac(seed)
Matthews Correlation Coefficient PknotsRG:
0.686
Carnac(seed):
0.200
Sensitivity PknotsRG:
0.710
Carnac(seed):
0.040
Positive Predictive Value PknotsRG:
0.672
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
11
Cylofold vs Carnac(seed)
Matthews Correlation Coefficient Cylofold:
0.672
Carnac(seed):
0.117
Sensitivity Cylofold:
0.638
Carnac(seed):
0.014
Positive Predictive Value Cylofold:
0.718
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
13
CentroidHomfold‑LAST vs Carnac(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.585
Carnac(seed):
0.279
Sensitivity CentroidHomfold‑LAST:
0.573
Carnac(seed):
0.078
Positive Predictive Value CentroidHomfold‑LAST:
0.606
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
13
RNASLOpt vs Carnac(seed)
Matthews Correlation Coefficient RNASLOpt:
0.527
Carnac(seed):
0.276
Sensitivity RNASLOpt:
0.520
Carnac(seed):
0.077
Positive Predictive Value RNASLOpt:
0.544
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
23
McQFold vs Carnac(seed)
Matthews Correlation Coefficient McQFold:
0.627
Carnac(seed):
0.492
Sensitivity McQFold:
0.632
Carnac(seed):
0.259
Positive Predictive Value McQFold:
0.625
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
19
ProbKnot vs Carnac(seed)
Matthews Correlation Coefficient ProbKnot:
0.610
Carnac(seed):
0.521
Sensitivity ProbKnot:
0.627
Carnac(seed):
0.291
Positive Predictive Value ProbKnot:
0.594
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.84041289224e-08
|
23
UNAFold vs Carnac(seed)
Matthews Correlation Coefficient UNAFold:
0.610
Carnac(seed):
0.492
Sensitivity UNAFold:
0.620
Carnac(seed):
0.259
Positive Predictive Value UNAFold:
0.601
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
22
HotKnots vs Carnac(seed)
Matthews Correlation Coefficient HotKnots:
0.642
Carnac(seed):
0.200
Sensitivity HotKnots:
0.673
Carnac(seed):
0.040
Positive Predictive Value HotKnots:
0.621
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
22
RNAshapes vs Carnac(seed)
Matthews Correlation Coefficient RNAshapes:
0.651
Carnac(seed):
0.200
Sensitivity RNAshapes:
0.658
Carnac(seed):
0.040
Positive Predictive Value RNAshapes:
0.652
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
23
RNAfold vs Carnac(seed)
Matthews Correlation Coefficient RNAfold:
0.623
Carnac(seed):
0.492
Sensitivity RNAfold:
0.637
Carnac(seed):
0.259
Positive Predictive Value RNAfold:
0.611
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
11
Afold vs Carnac(seed)
Matthews Correlation Coefficient Afold:
0.657
Carnac(seed):
0.123
Sensitivity Afold:
0.664
Carnac(seed):
0.015
Positive Predictive Value Afold:
0.659
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
16
RSpredict(20) vs Carnac(seed)
Matthews Correlation Coefficient RSpredict(20):
0.508
Carnac(seed):
0.000
Sensitivity RSpredict(20):
0.453
Carnac(seed):
0.000
Positive Predictive Value RSpredict(20):
0.579
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
10
Multilign(seed) vs Carnac(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Carnac(seed):
0.296
Sensitivity Multilign(seed):
0.608
Carnac(seed):
0.088
Positive Predictive Value Multilign(seed):
0.721
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.52299983238e-08
|
22
RNAsubopt vs Carnac(seed)
Matthews Correlation Coefficient RNAsubopt:
0.639
Carnac(seed):
0.200
Sensitivity RNAsubopt:
0.657
Carnac(seed):
0.040
Positive Predictive Value RNAsubopt:
0.630
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
19
Fold vs Carnac(seed)
Matthews Correlation Coefficient Fold:
0.560
Carnac(seed):
0.521
Sensitivity Fold:
0.585
Carnac(seed):
0.291
Positive Predictive Value Fold:
0.538
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 3.57327336088e-08
|
19
Vsfold4 vs Carnac(seed)
Matthews Correlation Coefficient Vsfold4:
0.585
Carnac(seed):
0.218
Sensitivity Vsfold4:
0.567
Carnac(seed):
0.048
Positive Predictive Value Vsfold4:
0.614
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 19
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
12
RNASampler(seed) vs Carnac(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Carnac(seed):
0.282
Sensitivity RNASampler(seed):
0.472
Carnac(seed):
0.080
Positive Predictive Value RNASampler(seed):
0.678
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.24270395587e-08
|
9
Multilign(20) vs Carnac(seed)
Matthews Correlation Coefficient Multilign(20):
0.459
Carnac(seed):
0.000
Sensitivity Multilign(20):
0.468
Carnac(seed):
0.000
Positive Predictive Value Multilign(20):
0.461
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
16
Mastr(20) vs Carnac(seed)
Matthews Correlation Coefficient Mastr(20):
0.457
Carnac(seed):
0.000
Sensitivity Mastr(20):
0.290
Carnac(seed):
0.000
Positive Predictive Value Mastr(20):
0.731
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 3.05041766982e-08
|
22
Murlet(seed) vs Carnac(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
Carnac(seed):
0.200
Sensitivity Murlet(seed):
0.349
Carnac(seed):
0.040
Positive Predictive Value Murlet(seed):
0.828
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
20
Vsfold5 vs Carnac(seed)
Matthews Correlation Coefficient Vsfold5:
0.547
Carnac(seed):
0.212
Sensitivity Vsfold5:
0.545
Carnac(seed):
0.045
Positive Predictive Value Vsfold5:
0.560
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 20
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
7
Alterna vs Carnac(seed)
Matthews Correlation Coefficient Alterna:
0.729
Carnac(seed):
0.149
Sensitivity Alterna:
0.701
Carnac(seed):
0.023
Positive Predictive Value Alterna:
0.770
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
11
RDfolder vs Carnac(seed)
Matthews Correlation Coefficient RDfolder:
0.548
Carnac(seed):
0.121
Sensitivity RDfolder:
0.483
Carnac(seed):
0.015
Positive Predictive Value RDfolder:
0.640
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 8.01312059156e-09
|
18
MCFold vs Carnac(seed)
Matthews Correlation Coefficient MCFold:
0.471
Carnac(seed):
0.228
Sensitivity MCFold:
0.516
Carnac(seed):
0.053
Positive Predictive Value MCFold:
0.442
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 18
Wilcoxon single-rank test P-value: 3.30280588002e-08
|
16
Carnac(seed) vs RNAwolf
Matthews Correlation Coefficient Carnac(seed):
0.556
RNAwolf:
0.494
Sensitivity Carnac(seed):
0.332
RNAwolf:
0.497
Positive Predictive Value Carnac(seed):
0.934
RNAwolf:
0.493
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 4.98334164692e-07
|
23
RSpredict(seed) vs Carnac(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.558
Carnac(seed):
0.492
Sensitivity RSpredict(seed):
0.431
Carnac(seed):
0.259
Positive Predictive Value RSpredict(seed):
0.724
Carnac(seed):
0.934
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
|
?
Carnac(seed) vs NanoFolder
Matthews Correlation Coefficient Carnac(seed):
0.363
NanoFolder:
0.295
Sensitivity Carnac(seed):
0.133
NanoFolder:
0.382
Positive Predictive Value Carnac(seed):
1.000
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
+
Carnac(seed) vs PPfold(seed)
Matthews Correlation Coefficient Carnac(seed):
0.254
PPfold(seed):
0.214
Sensitivity Carnac(seed):
0.065
PPfold(seed):
0.074
Positive Predictive Value Carnac(seed):
1.000
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.15369476696e-07
|
?
CMfinder(seed) vs Carnac(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Carnac(seed):
N/A
Sensitivity CMfinder(seed):
N/A
Carnac(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Carnac(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
Carnac(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
Carnac(seed) vs DAFS(20)
Matthews Correlation Coefficient Carnac(seed):
N/A
DAFS(20):
N/A
Sensitivity Carnac(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Carnac(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Carnac(seed)
Matthews Correlation Coefficient CMfinder(20):
0.385
Carnac(seed):
0.000
Sensitivity CMfinder(20):
0.310
Carnac(seed):
0.000
Positive Predictive Value CMfinder(20):
0.486
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs Carnac(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Carnac(seed):
0.177
Sensitivity CRWrnafold:
0.524
Carnac(seed):
0.032
Positive Predictive Value CRWrnafold:
0.516
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
DAFS(seed) vs Carnac(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
Carnac(seed):
N/A
Sensitivity DAFS(seed):
N/A
Carnac(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
Carnac(seed) vs Mastr(seed)
Matthews Correlation Coefficient Carnac(seed):
0.200
Mastr(seed):
0.043
Sensitivity Carnac(seed):
0.040
Mastr(seed):
0.005
Positive Predictive Value Carnac(seed):
1.000
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.25173280392e-08
|
NanoFolder |
9
CentroidAlifold(seed) vs NanoFolder
Matthews Correlation Coefficient CentroidAlifold(seed):
0.677
NanoFolder:
0.340
Sensitivity CentroidAlifold(seed):
0.495
NanoFolder:
0.438
Positive Predictive Value CentroidAlifold(seed):
0.931
NanoFolder:
0.277
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
6
CentroidAlifold(20) vs NanoFolder
Matthews Correlation Coefficient CentroidAlifold(20):
0.622
NanoFolder:
0.314
Sensitivity CentroidAlifold(20):
0.513
NanoFolder:
0.427
Positive Predictive Value CentroidAlifold(20):
0.759
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
9
PETfold_pre2.0(seed) vs NanoFolder
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.768
NanoFolder:
0.340
Sensitivity PETfold_pre2.0(seed):
0.703
NanoFolder:
0.438
Positive Predictive Value PETfold_pre2.0(seed):
0.844
NanoFolder:
0.277
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
8
RNAalifold(seed) vs NanoFolder
Matthews Correlation Coefficient RNAalifold(seed):
0.562
NanoFolder:
0.295
Sensitivity RNAalifold(seed):
0.382
NanoFolder:
0.382
Positive Predictive Value RNAalifold(seed):
0.835
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
6
RNAalifold(20) vs NanoFolder
Matthews Correlation Coefficient RNAalifold(20):
0.572
NanoFolder:
0.314
Sensitivity RNAalifold(20):
0.556
NanoFolder:
0.427
Positive Predictive Value RNAalifold(20):
0.596
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
MXScarna(seed) vs NanoFolder
Matthews Correlation Coefficient MXScarna(seed):
0.498
NanoFolder:
0.295
Sensitivity MXScarna(seed):
0.445
NanoFolder:
0.382
Positive Predictive Value MXScarna(seed):
0.566
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
13
CentroidFold vs NanoFolder
Matthews Correlation Coefficient CentroidFold:
0.564
NanoFolder:
0.406
Sensitivity CentroidFold:
0.560
NanoFolder:
0.516
Positive Predictive Value CentroidFold:
0.579
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.61939086268e-08
|
6
PPfold(20) vs NanoFolder
Matthews Correlation Coefficient PPfold(20):
0.574
NanoFolder:
0.314
Sensitivity PPfold(20):
0.547
NanoFolder:
0.427
Positive Predictive Value PPfold(20):
0.610
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
TurboFold(20) vs NanoFolder
Matthews Correlation Coefficient TurboFold(20):
0.519
NanoFolder:
0.314
Sensitivity TurboFold(20):
0.547
NanoFolder:
0.427
Positive Predictive Value TurboFold(20):
0.500
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
RNASampler(20) vs NanoFolder
Matthews Correlation Coefficient RNASampler(20):
0.547
NanoFolder:
0.314
Sensitivity RNASampler(20):
0.538
NanoFolder:
0.427
Positive Predictive Value RNASampler(20):
0.563
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
MXScarna(20) vs NanoFolder
Matthews Correlation Coefficient MXScarna(20):
0.535
NanoFolder:
0.314
Sensitivity MXScarna(20):
0.538
NanoFolder:
0.427
Positive Predictive Value MXScarna(20):
0.538
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
13
ContextFold vs NanoFolder
Matthews Correlation Coefficient ContextFold:
0.570
NanoFolder:
0.406
Sensitivity ContextFold:
0.556
NanoFolder:
0.516
Positive Predictive Value ContextFold:
0.594
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.49381627234e-08
|
13
IPknot vs NanoFolder
Matthews Correlation Coefficient IPknot:
0.567
NanoFolder:
0.406
Sensitivity IPknot:
0.564
NanoFolder:
0.516
Positive Predictive Value IPknot:
0.580
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
13
Contrafold vs NanoFolder
Matthews Correlation Coefficient Contrafold:
0.552
NanoFolder:
0.406
Sensitivity Contrafold:
0.572
NanoFolder:
0.516
Positive Predictive Value Contrafold:
0.544
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
6
Carnac(20) vs NanoFolder
Matthews Correlation Coefficient Carnac(20):
0.551
NanoFolder:
0.314
Sensitivity Carnac(20):
0.376
NanoFolder:
0.427
Positive Predictive Value Carnac(20):
0.815
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
Murlet(20) vs NanoFolder
Matthews Correlation Coefficient Murlet(20):
0.574
NanoFolder:
0.314
Sensitivity Murlet(20):
0.538
NanoFolder:
0.427
Positive Predictive Value Murlet(20):
0.618
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
PETfold_pre2.0(20) vs NanoFolder
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.588
NanoFolder:
0.314
Sensitivity PETfold_pre2.0(20):
0.581
NanoFolder:
0.427
Positive Predictive Value PETfold_pre2.0(20):
0.602
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
13
Sfold vs NanoFolder
Matthews Correlation Coefficient Sfold:
0.462
NanoFolder:
0.406
Sensitivity Sfold:
0.456
NanoFolder:
0.516
Positive Predictive Value Sfold:
0.481
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.1022514496e-08
|
13
Pknots vs NanoFolder
Matthews Correlation Coefficient Pknots:
0.551
NanoFolder:
0.406
Sensitivity Pknots:
0.596
NanoFolder:
0.516
Positive Predictive Value Pknots:
0.519
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.02510705504e-08
|
13
MaxExpect vs NanoFolder
Matthews Correlation Coefficient MaxExpect:
0.453
NanoFolder:
0.406
Sensitivity MaxExpect:
0.476
NanoFolder:
0.516
Positive Predictive Value MaxExpect:
0.444
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.60861252569e-06
|
7
TurboFold(seed) vs NanoFolder
Matthews Correlation Coefficient TurboFold(seed):
0.448
NanoFolder:
0.318
Sensitivity TurboFold(seed):
0.464
NanoFolder:
0.421
Positive Predictive Value TurboFold(seed):
0.442
NanoFolder:
0.252
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
13
PknotsRG vs NanoFolder
Matthews Correlation Coefficient PknotsRG:
0.561
NanoFolder:
0.406
Sensitivity PknotsRG:
0.616
NanoFolder:
0.516
Positive Predictive Value PknotsRG:
0.520
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
7
Cylofold vs NanoFolder
Matthews Correlation Coefficient Cylofold:
0.578
NanoFolder:
0.477
Sensitivity Cylofold:
0.574
NanoFolder:
0.551
Positive Predictive Value Cylofold:
0.600
NanoFolder:
0.434
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
12
CentroidHomfold‑LAST vs NanoFolder
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.604
NanoFolder:
0.396
Sensitivity CentroidHomfold‑LAST:
0.572
NanoFolder:
0.502
Positive Predictive Value CentroidHomfold‑LAST:
0.647
NanoFolder:
0.326
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.29018360962e-08
|
13
RNASLOpt vs NanoFolder
Matthews Correlation Coefficient RNASLOpt:
0.558
NanoFolder:
0.406
Sensitivity RNASLOpt:
0.564
NanoFolder:
0.516
Positive Predictive Value RNASLOpt:
0.562
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.64318034126e-08
|
13
McQFold vs NanoFolder
Matthews Correlation Coefficient McQFold:
0.575
NanoFolder:
0.406
Sensitivity McQFold:
0.612
NanoFolder:
0.516
Positive Predictive Value McQFold:
0.550
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
13
ProbKnot vs NanoFolder
Matthews Correlation Coefficient ProbKnot:
0.455
NanoFolder:
0.406
Sensitivity ProbKnot:
0.496
NanoFolder:
0.516
Positive Predictive Value ProbKnot:
0.431
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.58270421775e-05
|
13
UNAFold vs NanoFolder
Matthews Correlation Coefficient UNAFold:
0.418
NanoFolder:
0.406
Sensitivity UNAFold:
0.448
NanoFolder:
0.516
Positive Predictive Value UNAFold:
0.404
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.0148632542929
|
13
HotKnots vs NanoFolder
Matthews Correlation Coefficient HotKnots:
0.506
NanoFolder:
0.406
Sensitivity HotKnots:
0.560
NanoFolder:
0.516
Positive Predictive Value HotKnots:
0.468
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 5.40200680498e-09
|
13
RNAshapes vs NanoFolder
Matthews Correlation Coefficient RNAshapes:
0.482
NanoFolder:
0.406
Sensitivity RNAshapes:
0.512
NanoFolder:
0.516
Positive Predictive Value RNAshapes:
0.465
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.52609899389e-08
|
13
RNAfold vs NanoFolder
Matthews Correlation Coefficient RNAfold:
0.457
NanoFolder:
0.406
Sensitivity RNAfold:
0.492
NanoFolder:
0.516
Positive Predictive Value RNAfold:
0.438
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.58287649515e-08
|
8
Afold vs NanoFolder
Matthews Correlation Coefficient Afold:
0.404
NanoFolder:
0.338
Sensitivity Afold:
0.444
NanoFolder:
0.438
Positive Predictive Value Afold:
0.381
NanoFolder:
0.276
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
6
RSpredict(20) vs NanoFolder
Matthews Correlation Coefficient RSpredict(20):
0.373
NanoFolder:
0.314
Sensitivity RSpredict(20):
0.368
NanoFolder:
0.427
Positive Predictive Value RSpredict(20):
0.387
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
5
Multilign(seed) vs NanoFolder
Matthews Correlation Coefficient Multilign(seed):
0.637
NanoFolder:
0.319
Sensitivity Multilign(seed):
0.588
NanoFolder:
0.387
Positive Predictive Value Multilign(seed):
0.700
NanoFolder:
0.284
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
13
RNAsubopt vs NanoFolder
Matthews Correlation Coefficient RNAsubopt:
0.479
NanoFolder:
0.406
Sensitivity RNAsubopt:
0.524
NanoFolder:
0.516
Positive Predictive Value RNAsubopt:
0.450
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 3.06866544104e-08
|
13
Fold vs NanoFolder
Matthews Correlation Coefficient Fold:
0.433
NanoFolder:
0.406
Sensitivity Fold:
0.464
NanoFolder:
0.516
Positive Predictive Value Fold:
0.417
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 0.00091553769281
|
13
Vsfold4 vs NanoFolder
Matthews Correlation Coefficient Vsfold4:
0.440
NanoFolder:
0.406
Sensitivity Vsfold4:
0.440
NanoFolder:
0.516
Positive Predictive Value Vsfold4:
0.453
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 8.58621006346e-05
|
6
RNASampler(seed) vs NanoFolder
Matthews Correlation Coefficient RNASampler(seed):
0.390
NanoFolder:
0.244
Sensitivity RNASampler(seed):
0.326
NanoFolder:
0.333
Positive Predictive Value RNASampler(seed):
0.477
NanoFolder:
0.191
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
Multilign(20) vs NanoFolder
Matthews Correlation Coefficient Multilign(20):
0.457
NanoFolder:
0.314
Sensitivity Multilign(20):
0.496
NanoFolder:
0.427
Positive Predictive Value Multilign(20):
0.430
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
Mastr(20) vs NanoFolder
Matthews Correlation Coefficient Mastr(20):
0.452
NanoFolder:
0.314
Sensitivity Mastr(20):
0.282
NanoFolder:
0.427
Positive Predictive Value Mastr(20):
0.733
NanoFolder:
0.242
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
Murlet(seed) vs NanoFolder
Matthews Correlation Coefficient Murlet(seed):
0.473
NanoFolder:
0.295
Sensitivity Murlet(seed):
0.301
NanoFolder:
0.382
Positive Predictive Value Murlet(seed):
0.754
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
13
Vsfold5 vs NanoFolder
Matthews Correlation Coefficient Vsfold5:
0.490
NanoFolder:
0.406
Sensitivity Vsfold5:
0.528
NanoFolder:
0.516
Positive Predictive Value Vsfold5:
0.466
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.20167918023e-08
|
1
NanoFolder vs Alterna
Matthews Correlation Coefficient NanoFolder:
0.536
Alterna:
0.471
Sensitivity NanoFolder:
0.611
Alterna:
0.444
Positive Predictive Value NanoFolder:
0.500
Alterna:
0.533
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
7
NanoFolder vs RDfolder
Matthews Correlation Coefficient NanoFolder:
0.483
RDfolder:
0.470
Sensitivity NanoFolder:
0.558
RDfolder:
0.435
Positive Predictive Value NanoFolder:
0.440
RDfolder:
0.531
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
11
NanoFolder vs MCFold
Matthews Correlation Coefficient NanoFolder:
0.444
MCFold:
0.375
Sensitivity NanoFolder:
0.585
MCFold:
0.441
Positive Predictive Value NanoFolder:
0.348
MCFold:
0.332
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
13
RNAwolf vs NanoFolder
Matthews Correlation Coefficient RNAwolf:
0.452
NanoFolder:
0.406
Sensitivity RNAwolf:
0.468
NanoFolder:
0.516
Positive Predictive Value RNAwolf:
0.450
NanoFolder:
0.333
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 6.61597961434e-08
|
9
NanoFolder vs RSpredict(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
RSpredict(seed):
0.203
Sensitivity NanoFolder:
0.438
RSpredict(seed):
0.120
Positive Predictive Value NanoFolder:
0.277
RSpredict(seed):
0.359
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
8
Carnac(seed) vs NanoFolder
Matthews Correlation Coefficient Carnac(seed):
0.363
NanoFolder:
0.295
Sensitivity Carnac(seed):
0.133
NanoFolder:
0.382
Positive Predictive Value Carnac(seed):
1.000
NanoFolder:
0.241
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
|
?
NanoFolder vs PPfold(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
PPfold(seed):
0.290
Sensitivity NanoFolder:
0.438
PPfold(seed):
0.125
Positive Predictive Value NanoFolder:
0.277
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
?
NanoFolder vs CMfinder(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
CMfinder(seed):
N/A
Sensitivity NanoFolder:
N/A
CMfinder(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
NanoFolder vs PETfold_2.0(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Sensitivity NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
NanoFolder vs DAFS(20)
Matthews Correlation Coefficient NanoFolder:
N/A
DAFS(20):
N/A
Sensitivity NanoFolder:
N/A
DAFS(20):
N/A
Positive Predictive Value NanoFolder:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
NanoFolder vs PETfold_2.0(20)
Matthews Correlation Coefficient NanoFolder:
N/A
PETfold_2.0(20):
N/A
Sensitivity NanoFolder:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value NanoFolder:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs NanoFolder
Matthews Correlation Coefficient CMfinder(20):
0.513
NanoFolder:
0.346
Sensitivity CMfinder(20):
0.491
NanoFolder:
0.509
Positive Predictive Value CMfinder(20):
0.542
NanoFolder:
0.243
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs NanoFolder
Matthews Correlation Coefficient CRWrnafold:
0.437
NanoFolder:
0.427
Sensitivity CRWrnafold:
0.462
NanoFolder:
0.519
Positive Predictive Value CRWrnafold:
0.429
NanoFolder:
0.365
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
NanoFolder vs DAFS(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
DAFS(seed):
N/A
Sensitivity NanoFolder:
N/A
DAFS(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
NanoFolder vs Mastr(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
Mastr(seed):
0.075
Sensitivity NanoFolder:
0.438
Mastr(seed):
0.016
Positive Predictive Value NanoFolder:
0.277
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
PPfold(seed) |
17
CentroidAlifold(seed) vs PPfold(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.728
PPfold(seed):
0.202
Sensitivity CentroidAlifold(seed):
0.567
PPfold(seed):
0.066
Positive Predictive Value CentroidAlifold(seed):
0.941
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.64481516727e-08
|
12
CentroidAlifold(20) vs PPfold(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.712
PPfold(seed):
0.073
Sensitivity CentroidAlifold(20):
0.598
PPfold(seed):
0.019
Positive Predictive Value CentroidAlifold(20):
0.852
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
15
PETfold_pre2.0(seed) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
PPfold(seed):
0.218
Sensitivity PETfold_pre2.0(seed):
0.726
PPfold(seed):
0.076
Positive Predictive Value PETfold_pre2.0(seed):
0.861
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.71568867205e-08
|
15
RNAalifold(seed) vs PPfold(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.646
PPfold(seed):
0.214
Sensitivity RNAalifold(seed):
0.473
PPfold(seed):
0.074
Positive Predictive Value RNAalifold(seed):
0.888
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
12
RNAalifold(20) vs PPfold(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.664
PPfold(seed):
0.073
Sensitivity RNAalifold(20):
0.618
PPfold(seed):
0.019
Positive Predictive Value RNAalifold(20):
0.721
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.34193807955e-08
|
16
MXScarna(seed) vs PPfold(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.612
PPfold(seed):
0.207
Sensitivity MXScarna(seed):
0.553
PPfold(seed):
0.070
Positive Predictive Value MXScarna(seed):
0.685
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
17
CentroidFold vs PPfold(seed)
Matthews Correlation Coefficient CentroidFold:
0.663
PPfold(seed):
0.202
Sensitivity CentroidFold:
0.641
PPfold(seed):
0.066
Positive Predictive Value CentroidFold:
0.694
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
12
PPfold(20) vs PPfold(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
PPfold(seed):
0.073
Sensitivity PPfold(20):
0.614
PPfold(seed):
0.019
Positive Predictive Value PPfold(20):
0.733
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.67657656842e-08
|
12
TurboFold(20) vs PPfold(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
PPfold(seed):
0.073
Sensitivity TurboFold(20):
0.629
PPfold(seed):
0.019
Positive Predictive Value TurboFold(20):
0.649
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
12
RNASampler(20) vs PPfold(seed)
Matthews Correlation Coefficient RNASampler(20):
0.628
PPfold(seed):
0.073
Sensitivity RNASampler(20):
0.583
PPfold(seed):
0.019
Positive Predictive Value RNASampler(20):
0.683
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.75835195567e-08
|
12
MXScarna(20) vs PPfold(seed)
Matthews Correlation Coefficient MXScarna(20):
0.600
PPfold(seed):
0.073
Sensitivity MXScarna(20):
0.568
PPfold(seed):
0.019
Positive Predictive Value MXScarna(20):
0.642
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.42300079339e-08
|
15
ContextFold vs PPfold(seed)
Matthews Correlation Coefficient ContextFold:
0.611
PPfold(seed):
0.218
Sensitivity ContextFold:
0.588
PPfold(seed):
0.076
Positive Predictive Value ContextFold:
0.643
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.7402423548e-08
|
17
IPknot vs PPfold(seed)
Matthews Correlation Coefficient IPknot:
0.644
PPfold(seed):
0.202
Sensitivity IPknot:
0.623
PPfold(seed):
0.066
Positive Predictive Value IPknot:
0.673
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
17
Contrafold vs PPfold(seed)
Matthews Correlation Coefficient Contrafold:
0.642
PPfold(seed):
0.202
Sensitivity Contrafold:
0.649
PPfold(seed):
0.066
Positive Predictive Value Contrafold:
0.644
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.45805449719e-08
|
12
Carnac(20) vs PPfold(seed)
Matthews Correlation Coefficient Carnac(20):
0.585
PPfold(seed):
0.073
Sensitivity Carnac(20):
0.413
PPfold(seed):
0.019
Positive Predictive Value Carnac(20):
0.836
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.98760236454e-08
|
12
Murlet(20) vs PPfold(seed)
Matthews Correlation Coefficient Murlet(20):
0.576
PPfold(seed):
0.073
Sensitivity Murlet(20):
0.521
PPfold(seed):
0.019
Positive Predictive Value Murlet(20):
0.646
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.00627773251e-08
|
10
PETfold_pre2.0(20) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
PPfold(seed):
0.082
Sensitivity PETfold_pre2.0(20):
0.597
PPfold(seed):
0.024
Positive Predictive Value PETfold_pre2.0(20):
0.654
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 6.21732636221e-09
|
17
Sfold vs PPfold(seed)
Matthews Correlation Coefficient Sfold:
0.601
PPfold(seed):
0.202
Sensitivity Sfold:
0.575
PPfold(seed):
0.066
Positive Predictive Value Sfold:
0.637
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.43573297697e-08
|
17
Pknots vs PPfold(seed)
Matthews Correlation Coefficient Pknots:
0.609
PPfold(seed):
0.202
Sensitivity Pknots:
0.646
PPfold(seed):
0.066
Positive Predictive Value Pknots:
0.583
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
17
MaxExpect vs PPfold(seed)
Matthews Correlation Coefficient MaxExpect:
0.566
PPfold(seed):
0.202
Sensitivity MaxExpect:
0.565
PPfold(seed):
0.066
Positive Predictive Value MaxExpect:
0.578
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.97012568641e-08
|
13
TurboFold(seed) vs PPfold(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
PPfold(seed):
0.233
Sensitivity TurboFold(seed):
0.598
PPfold(seed):
0.088
Positive Predictive Value TurboFold(seed):
0.630
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 1.64481516727e-08
|
17
PknotsRG vs PPfold(seed)
Matthews Correlation Coefficient PknotsRG:
0.597
PPfold(seed):
0.202
Sensitivity PknotsRG:
0.636
PPfold(seed):
0.066
Positive Predictive Value PknotsRG:
0.571
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.16131455263e-08
|
10
Cylofold vs PPfold(seed)
Matthews Correlation Coefficient Cylofold:
0.671
PPfold(seed):
0.136
Sensitivity Cylofold:
0.631
PPfold(seed):
0.025
Positive Predictive Value Cylofold:
0.727
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.04628667909e-08
|
15
CentroidHomfold‑LAST vs PPfold(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
PPfold(seed):
0.220
Sensitivity CentroidHomfold‑LAST:
0.583
PPfold(seed):
0.072
Positive Predictive Value CentroidHomfold‑LAST:
0.586
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.48055519165e-08
|
15
RNASLOpt vs PPfold(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
PPfold(seed):
0.218
Sensitivity RNASLOpt:
0.559
PPfold(seed):
0.076
Positive Predictive Value RNASLOpt:
0.576
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 3.21671975982e-08
|
17
McQFold vs PPfold(seed)
Matthews Correlation Coefficient McQFold:
0.643
PPfold(seed):
0.202
Sensitivity McQFold:
0.662
PPfold(seed):
0.066
Positive Predictive Value McQFold:
0.634
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
17
ProbKnot vs PPfold(seed)
Matthews Correlation Coefficient ProbKnot:
0.565
PPfold(seed):
0.202
Sensitivity ProbKnot:
0.593
PPfold(seed):
0.066
Positive Predictive Value ProbKnot:
0.548
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
17
UNAFold vs PPfold(seed)
Matthews Correlation Coefficient UNAFold:
0.515
PPfold(seed):
0.202
Sensitivity UNAFold:
0.537
PPfold(seed):
0.066
Positive Predictive Value UNAFold:
0.506
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.13260312532e-08
|
17
HotKnots vs PPfold(seed)
Matthews Correlation Coefficient HotKnots:
0.555
PPfold(seed):
0.202
Sensitivity HotKnots:
0.595
PPfold(seed):
0.066
Positive Predictive Value HotKnots:
0.527
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
17
RNAshapes vs PPfold(seed)
Matthews Correlation Coefficient RNAshapes:
0.568
PPfold(seed):
0.202
Sensitivity RNAshapes:
0.590
PPfold(seed):
0.066
Positive Predictive Value RNAshapes:
0.558
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 1.93248927742e-08
|
17
RNAfold vs PPfold(seed)
Matthews Correlation Coefficient RNAfold:
0.553
PPfold(seed):
0.202
Sensitivity RNAfold:
0.578
PPfold(seed):
0.066
Positive Predictive Value RNAfold:
0.539
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.76499031155e-08
|
6
Afold vs PPfold(seed)
Matthews Correlation Coefficient Afold:
0.529
PPfold(seed):
0.171
Sensitivity Afold:
0.560
PPfold(seed):
0.056
Positive Predictive Value Afold:
0.511
PPfold(seed):
0.538
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
12
RSpredict(20) vs PPfold(seed)
Matthews Correlation Coefficient RSpredict(20):
0.515
PPfold(seed):
0.073
Sensitivity RSpredict(20):
0.486
PPfold(seed):
0.019
Positive Predictive Value RSpredict(20):
0.555
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 8.35333035499e-09
|
10
Multilign(seed) vs PPfold(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
PPfold(seed):
0.258
Sensitivity Multilign(seed):
0.608
PPfold(seed):
0.088
Positive Predictive Value Multilign(seed):
0.721
PPfold(seed):
0.767
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.38194587311e-08
|
17
RNAsubopt vs PPfold(seed)
Matthews Correlation Coefficient RNAsubopt:
0.558
PPfold(seed):
0.202
Sensitivity RNAsubopt:
0.590
PPfold(seed):
0.066
Positive Predictive Value RNAsubopt:
0.537
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.43573297697e-08
|
17
Fold vs PPfold(seed)
Matthews Correlation Coefficient Fold:
0.506
PPfold(seed):
0.202
Sensitivity Fold:
0.534
PPfold(seed):
0.066
Positive Predictive Value Fold:
0.491
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.22210847902e-08
|
14
Vsfold4 vs PPfold(seed)
Matthews Correlation Coefficient Vsfold4:
0.535
PPfold(seed):
0.230
Sensitivity Vsfold4:
0.531
PPfold(seed):
0.079
Positive Predictive Value Vsfold4:
0.551
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 2.39162260866e-08
|
9
RNASampler(seed) vs PPfold(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.497
PPfold(seed):
0.277
Sensitivity RNASampler(seed):
0.412
PPfold(seed):
0.123
Positive Predictive Value RNASampler(seed):
0.608
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
11
Multilign(20) vs PPfold(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
PPfold(seed):
0.058
Sensitivity Multilign(20):
0.530
PPfold(seed):
0.013
Positive Predictive Value Multilign(20):
0.515
PPfold(seed):
0.273
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
12
Mastr(20) vs PPfold(seed)
Matthews Correlation Coefficient Mastr(20):
0.544
PPfold(seed):
0.073
Sensitivity Mastr(20):
0.363
PPfold(seed):
0.019
Positive Predictive Value Mastr(20):
0.825
PPfold(seed):
0.294
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
15
Murlet(seed) vs PPfold(seed)
Matthews Correlation Coefficient Murlet(seed):
0.493
PPfold(seed):
0.214
Sensitivity Murlet(seed):
0.320
PPfold(seed):
0.074
Positive Predictive Value Murlet(seed):
0.769
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
15
Vsfold5 vs PPfold(seed)
Matthews Correlation Coefficient Vsfold5:
0.519
PPfold(seed):
0.220
Sensitivity Vsfold5:
0.541
PPfold(seed):
0.072
Positive Predictive Value Vsfold5:
0.510
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.54914456376e-08
|
3
Alterna vs PPfold(seed)
Matthews Correlation Coefficient Alterna:
0.624
PPfold(seed):
0.247
Sensitivity Alterna:
0.606
PPfold(seed):
0.085
Positive Predictive Value Alterna:
0.662
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
9
RDfolder vs PPfold(seed)
Matthews Correlation Coefficient RDfolder:
0.498
PPfold(seed):
0.146
Sensitivity RDfolder:
0.443
PPfold(seed):
0.030
Positive Predictive Value RDfolder:
0.581
PPfold(seed):
0.750
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
14
MCFold vs PPfold(seed)
Matthews Correlation Coefficient MCFold:
0.407
PPfold(seed):
0.232
Sensitivity MCFold:
0.457
PPfold(seed):
0.087
Positive Predictive Value MCFold:
0.375
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 14
Wilcoxon single-rank test P-value: 1.03576421863e-08
|
17
RNAwolf vs PPfold(seed)
Matthews Correlation Coefficient RNAwolf:
0.450
PPfold(seed):
0.202
Sensitivity RNAwolf:
0.463
PPfold(seed):
0.066
Positive Predictive Value RNAwolf:
0.449
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.24519439238e-08
|
17
RSpredict(seed) vs PPfold(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.261
PPfold(seed):
0.202
Sensitivity RSpredict(seed):
0.145
PPfold(seed):
0.066
Positive Predictive Value RSpredict(seed):
0.487
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.59578924681e-08
|
15
Carnac(seed) vs PPfold(seed)
Matthews Correlation Coefficient Carnac(seed):
0.254
PPfold(seed):
0.214
Sensitivity Carnac(seed):
0.065
PPfold(seed):
0.074
Positive Predictive Value Carnac(seed):
1.000
PPfold(seed):
0.634
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.15369476696e-07
|
9
NanoFolder vs PPfold(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
PPfold(seed):
0.290
Sensitivity NanoFolder:
0.438
PPfold(seed):
0.125
Positive Predictive Value NanoFolder:
0.277
PPfold(seed):
0.686
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
|
?
PPfold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient PPfold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity PPfold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PPfold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
PPfold(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
PPfold(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
PPfold(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
?
PPfold(seed) vs DAFS(20)
Matthews Correlation Coefficient PPfold(seed):
N/A
DAFS(20):
N/A
Sensitivity PPfold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PPfold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PPfold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs PPfold(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
PPfold(seed):
0.081
Sensitivity CMfinder(20):
0.500
PPfold(seed):
0.020
Positive Predictive Value CMfinder(20):
0.681
PPfold(seed):
0.333
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
?
CRWrnafold vs PPfold(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
PPfold(seed):
0.170
Sensitivity CRWrnafold:
0.524
PPfold(seed):
0.056
Positive Predictive Value CRWrnafold:
0.516
PPfold(seed):
0.538
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
?
PPfold(seed) vs DAFS(seed)
Matthews Correlation Coefficient PPfold(seed):
N/A
DAFS(seed):
N/A
Sensitivity PPfold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value PPfold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
+
PPfold(seed) vs Mastr(seed)
Matthews Correlation Coefficient PPfold(seed):
0.202
Mastr(seed):
0.052
Sensitivity PPfold(seed):
0.066
Mastr(seed):
0.008
Positive Predictive Value PPfold(seed):
0.634
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
CMfinder(seed) |
0
CentroidAlifold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Sensitivity CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
CentroidAlifold(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_pre2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(20) vs CMfinder(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
CMfinder(seed):
N/A
Sensitivity RNAalifold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs MXScarna(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
MXScarna(seed):
N/A
Sensitivity CMfinder(seed):
N/A
MXScarna(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs CentroidFold
Matthews Correlation Coefficient CMfinder(seed):
N/A
CentroidFold:
N/A
Sensitivity CMfinder(seed):
N/A
CentroidFold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
CentroidFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(20) vs CMfinder(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
CMfinder(seed):
N/A
Sensitivity PPfold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(20) vs CMfinder(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
CMfinder(seed):
N/A
Sensitivity TurboFold(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(20) vs CMfinder(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
CMfinder(seed):
N/A
Sensitivity RNASampler(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs MXScarna(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
MXScarna(20):
N/A
Sensitivity CMfinder(seed):
N/A
MXScarna(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ContextFold vs CMfinder(seed)
Matthews Correlation Coefficient ContextFold:
N/A
CMfinder(seed):
N/A
Sensitivity ContextFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value ContextFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs IPknot
Matthews Correlation Coefficient CMfinder(seed):
N/A
IPknot:
N/A
Sensitivity CMfinder(seed):
N/A
IPknot:
N/A
Positive Predictive Value CMfinder(seed):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Contrafold vs CMfinder(seed)
Matthews Correlation Coefficient Contrafold:
N/A
CMfinder(seed):
N/A
Sensitivity Contrafold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Contrafold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Carnac(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Carnac(20):
N/A
Sensitivity CMfinder(seed):
N/A
Carnac(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Carnac(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(20) vs CMfinder(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
CMfinder(seed):
N/A
Sensitivity Murlet(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(20) vs CMfinder(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Sfold
Matthews Correlation Coefficient CMfinder(seed):
N/A
Sfold:
N/A
Sensitivity CMfinder(seed):
N/A
Sfold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Pknots vs CMfinder(seed)
Matthews Correlation Coefficient Pknots:
N/A
CMfinder(seed):
N/A
Sensitivity Pknots:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Pknots:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MaxExpect vs CMfinder(seed)
Matthews Correlation Coefficient MaxExpect:
N/A
CMfinder(seed):
N/A
Sensitivity MaxExpect:
N/A
CMfinder(seed):
N/A
Positive Predictive Value MaxExpect:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient TurboFold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity TurboFold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value TurboFold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PknotsRG vs CMfinder(seed)
Matthews Correlation Coefficient PknotsRG:
N/A
CMfinder(seed):
N/A
Sensitivity PknotsRG:
N/A
CMfinder(seed):
N/A
Positive Predictive Value PknotsRG:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Cylofold vs CMfinder(seed)
Matthews Correlation Coefficient Cylofold:
N/A
CMfinder(seed):
N/A
Sensitivity Cylofold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Cylofold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidHomfold‑LAST vs CMfinder(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs RNASLOpt
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNASLOpt:
N/A
Sensitivity CMfinder(seed):
N/A
RNASLOpt:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
McQFold vs CMfinder(seed)
Matthews Correlation Coefficient McQFold:
N/A
CMfinder(seed):
N/A
Sensitivity McQFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value McQFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ProbKnot vs CMfinder(seed)
Matthews Correlation Coefficient ProbKnot:
N/A
CMfinder(seed):
N/A
Sensitivity ProbKnot:
N/A
CMfinder(seed):
N/A
Positive Predictive Value ProbKnot:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
UNAFold vs CMfinder(seed)
Matthews Correlation Coefficient UNAFold:
N/A
CMfinder(seed):
N/A
Sensitivity UNAFold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value UNAFold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
HotKnots vs CMfinder(seed)
Matthews Correlation Coefficient HotKnots:
N/A
CMfinder(seed):
N/A
Sensitivity HotKnots:
N/A
CMfinder(seed):
N/A
Positive Predictive Value HotKnots:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs RNAshapes
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAshapes:
N/A
Sensitivity CMfinder(seed):
N/A
RNAshapes:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAshapes:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs RNAfold
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAfold:
N/A
Sensitivity CMfinder(seed):
N/A
RNAfold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Afold
Matthews Correlation Coefficient CMfinder(seed):
N/A
Afold:
N/A
Sensitivity CMfinder(seed):
N/A
Afold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Afold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(20) vs CMfinder(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
CMfinder(seed):
N/A
Sensitivity RSpredict(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Multilign(seed) vs CMfinder(seed)
Matthews Correlation Coefficient Multilign(seed):
N/A
CMfinder(seed):
N/A
Sensitivity Multilign(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Multilign(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs RNAsubopt
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAsubopt:
N/A
Sensitivity CMfinder(seed):
N/A
RNAsubopt:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAsubopt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Fold vs CMfinder(seed)
Matthews Correlation Coefficient Fold:
N/A
CMfinder(seed):
N/A
Sensitivity Fold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Fold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold4 vs CMfinder(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
CMfinder(seed):
N/A
Sensitivity Vsfold4:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RNASampler(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Multilign(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Multilign(20):
N/A
Sensitivity CMfinder(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(20) vs CMfinder(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
CMfinder(seed):
N/A
Sensitivity Mastr(20):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Murlet(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Murlet(seed):
N/A
Sensitivity CMfinder(seed):
N/A
Murlet(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Murlet(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold5 vs CMfinder(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
CMfinder(seed):
N/A
Sensitivity Vsfold5:
N/A
CMfinder(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Alterna
Matthews Correlation Coefficient CMfinder(seed):
N/A
Alterna:
N/A
Sensitivity CMfinder(seed):
N/A
Alterna:
N/A
Positive Predictive Value CMfinder(seed):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RDfolder vs CMfinder(seed)
Matthews Correlation Coefficient RDfolder:
N/A
CMfinder(seed):
N/A
Sensitivity RDfolder:
N/A
CMfinder(seed):
N/A
Positive Predictive Value RDfolder:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs MCFold
Matthews Correlation Coefficient CMfinder(seed):
N/A
MCFold:
N/A
Sensitivity CMfinder(seed):
N/A
MCFold:
N/A
Positive Predictive Value CMfinder(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs RNAwolf
Matthews Correlation Coefficient CMfinder(seed):
N/A
RNAwolf:
N/A
Sensitivity CMfinder(seed):
N/A
RNAwolf:
N/A
Positive Predictive Value CMfinder(seed):
N/A
RNAwolf:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(seed) vs CMfinder(seed)
Matthews Correlation Coefficient RSpredict(seed):
N/A
CMfinder(seed):
N/A
Sensitivity RSpredict(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value RSpredict(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs Carnac(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
Carnac(seed):
N/A
Sensitivity CMfinder(seed):
N/A
Carnac(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
NanoFolder vs CMfinder(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
CMfinder(seed):
N/A
Sensitivity NanoFolder:
N/A
CMfinder(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(seed) vs CMfinder(seed)
Matthews Correlation Coefficient PPfold(seed):
N/A
CMfinder(seed):
N/A
Sensitivity PPfold(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value PPfold(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
CMfinder(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(seed) vs DAFS(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
DAFS(20):
N/A
Sensitivity CMfinder(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(seed) vs CMfinder(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
CMfinder(20):
N/A
Sensitivity CMfinder(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CRWrnafold vs CMfinder(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
CMfinder(seed):
N/A
Sensitivity CRWrnafold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(seed) vs CMfinder(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
CMfinder(seed):
N/A
Sensitivity DAFS(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(seed) vs CMfinder(seed)
Matthews Correlation Coefficient Mastr(seed):
N/A
CMfinder(seed):
N/A
Sensitivity Mastr(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Mastr(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
PETfold_2.0(seed) |
1
CentroidAlifold(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.862
PETfold_2.0(seed):
0.831
Sensitivity CentroidAlifold(seed):
0.806
PETfold_2.0(seed):
0.806
Positive Predictive Value CentroidAlifold(seed):
0.926
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
CentroidAlifold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
PETfold_pre2.0(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.846
PETfold_2.0(seed):
0.831
Sensitivity PETfold_pre2.0(seed):
0.806
PETfold_2.0(seed):
0.806
Positive Predictive Value PETfold_pre2.0(seed):
0.893
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
PETfold_2.0(seed) vs RNAalifold(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RNAalifold(seed):
0.780
Sensitivity PETfold_2.0(seed):
0.806
RNAalifold(seed):
0.613
Positive Predictive Value PETfold_2.0(seed):
0.862
RNAalifold(seed):
1.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
RNAalifold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
MXScarna(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.917
PETfold_2.0(seed):
0.831
Sensitivity MXScarna(seed):
0.903
PETfold_2.0(seed):
0.806
Positive Predictive Value MXScarna(seed):
0.933
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
CentroidFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidFold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity CentroidFold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value CentroidFold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
PPfold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MXScarna(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value MXScarna(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
ContextFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient ContextFold:
0.899
PETfold_2.0(seed):
0.831
Sensitivity ContextFold:
0.871
PETfold_2.0(seed):
0.806
Positive Predictive Value ContextFold:
0.931
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
IPknot vs PETfold_2.0(seed)
Matthews Correlation Coefficient IPknot:
0.967
PETfold_2.0(seed):
0.831
Sensitivity IPknot:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value IPknot:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
Contrafold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Contrafold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Contrafold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Contrafold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Carnac(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Carnac(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
Sfold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Sfold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Sfold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Sfold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
Pknots vs PETfold_2.0(seed)
Matthews Correlation Coefficient Pknots:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Pknots:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Pknots:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
MaxExpect vs PETfold_2.0(seed)
Matthews Correlation Coefficient MaxExpect:
0.967
PETfold_2.0(seed):
0.831
Sensitivity MaxExpect:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value MaxExpect:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
TurboFold(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.967
PETfold_2.0(seed):
0.831
Sensitivity TurboFold(seed):
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value TurboFold(seed):
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
PknotsRG vs PETfold_2.0(seed)
Matthews Correlation Coefficient PknotsRG:
0.967
PETfold_2.0(seed):
0.831
Sensitivity PknotsRG:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value PknotsRG:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Cylofold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Cylofold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Cylofold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Cylofold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidHomfold‑LAST vs PETfold_2.0(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
RNASLOpt vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASLOpt:
0.933
PETfold_2.0(seed):
0.831
Sensitivity RNASLOpt:
0.903
PETfold_2.0(seed):
0.806
Positive Predictive Value RNASLOpt:
0.966
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
McQFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient McQFold:
0.860
PETfold_2.0(seed):
0.831
Sensitivity McQFold:
0.774
PETfold_2.0(seed):
0.806
Positive Predictive Value McQFold:
0.960
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
ProbKnot vs PETfold_2.0(seed)
Matthews Correlation Coefficient ProbKnot:
0.967
PETfold_2.0(seed):
0.831
Sensitivity ProbKnot:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value ProbKnot:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
UNAFold vs PETfold_2.0(seed)
Matthews Correlation Coefficient UNAFold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity UNAFold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value UNAFold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
HotKnots vs PETfold_2.0(seed)
Matthews Correlation Coefficient HotKnots:
0.967
PETfold_2.0(seed):
0.831
Sensitivity HotKnots:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value HotKnots:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
RNAshapes vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAshapes:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAshapes:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAshapes:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
RNAfold vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAfold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAfold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAfold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Afold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Afold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Afold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Afold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
Multilign(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Multilign(seed):
0.967
PETfold_2.0(seed):
0.831
Sensitivity Multilign(seed):
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Multilign(seed):
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
RNAsubopt vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNAsubopt:
0.967
PETfold_2.0(seed):
0.831
Sensitivity RNAsubopt:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value RNAsubopt:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
Fold vs PETfold_2.0(seed)
Matthews Correlation Coefficient Fold:
0.967
PETfold_2.0(seed):
0.831
Sensitivity Fold:
0.968
PETfold_2.0(seed):
0.806
Positive Predictive Value Fold:
0.968
PETfold_2.0(seed):
0.862
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Vsfold4 vs PETfold_2.0(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(seed) vs Multilign(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
PETfold_2.0(seed) vs Murlet(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Murlet(seed):
0.475
Sensitivity PETfold_2.0(seed):
0.806
Murlet(seed):
0.258
Positive Predictive Value PETfold_2.0(seed):
0.862
Murlet(seed):
0.889
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Vsfold5 vs PETfold_2.0(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Alterna vs PETfold_2.0(seed)
Matthews Correlation Coefficient Alterna:
N/A
PETfold_2.0(seed):
N/A
Sensitivity Alterna:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value Alterna:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RDfolder vs PETfold_2.0(seed)
Matthews Correlation Coefficient RDfolder:
N/A
PETfold_2.0(seed):
N/A
Sensitivity RDfolder:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value RDfolder:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(seed) vs MCFold
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
MCFold:
N/A
Sensitivity PETfold_2.0(seed):
N/A
MCFold:
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
PETfold_2.0(seed) vs RNAwolf
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RNAwolf:
0.811
Sensitivity PETfold_2.0(seed):
0.806
RNAwolf:
0.774
Positive Predictive Value PETfold_2.0(seed):
0.862
RNAwolf:
0.857
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
PETfold_2.0(seed) vs RSpredict(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
RSpredict(seed):
0.566
Sensitivity PETfold_2.0(seed):
0.806
RSpredict(seed):
0.355
Positive Predictive Value PETfold_2.0(seed):
0.862
RSpredict(seed):
0.917
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
1
PETfold_2.0(seed) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Carnac(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
Carnac(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
NanoFolder vs PETfold_2.0(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Sensitivity NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
PETfold_2.0(seed) vs PPfold(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
PPfold(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
PPfold(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
PPfold(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
CMfinder(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
PETfold_2.0(seed) vs DAFS(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CRWrnafold vs PETfold_2.0(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
PETfold_2.0(seed) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Mastr(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
Mastr(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
DAFS(20) |
0
CentroidAlifold(seed) vs DAFS(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Sensitivity CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidAlifold(20) vs DAFS(20)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
DAFS(20):
N/A
Sensitivity CentroidAlifold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(seed) vs DAFS(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Sensitivity PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_pre2.0(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(seed) vs DAFS(20)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
DAFS(20):
N/A
Sensitivity RNAalifold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(20) vs DAFS(20)
Matthews Correlation Coefficient RNAalifold(20):
N/A
DAFS(20):
N/A
Sensitivity RNAalifold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RNAalifold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MXScarna(seed) vs DAFS(20)
Matthews Correlation Coefficient MXScarna(seed):
N/A
DAFS(20):
N/A
Sensitivity MXScarna(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value MXScarna(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidFold vs DAFS(20)
Matthews Correlation Coefficient CentroidFold:
N/A
DAFS(20):
N/A
Sensitivity CentroidFold:
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(20) vs DAFS(20)
Matthews Correlation Coefficient PPfold(20):
N/A
DAFS(20):
N/A
Sensitivity PPfold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PPfold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(20) vs DAFS(20)
Matthews Correlation Coefficient TurboFold(20):
N/A
DAFS(20):
N/A
Sensitivity TurboFold(20):
N/A
DAFS(20):
N/A
Positive Predictive Value TurboFold(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(20) vs DAFS(20)
Matthews Correlation Coefficient RNASampler(20):
N/A
DAFS(20):
N/A
Sensitivity RNASampler(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RNASampler(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MXScarna(20) vs DAFS(20)
Matthews Correlation Coefficient MXScarna(20):
N/A
DAFS(20):
N/A
Sensitivity MXScarna(20):
N/A
DAFS(20):
N/A
Positive Predictive Value MXScarna(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ContextFold vs DAFS(20)
Matthews Correlation Coefficient ContextFold:
N/A
DAFS(20):
N/A
Sensitivity ContextFold:
N/A
DAFS(20):
N/A
Positive Predictive Value ContextFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
IPknot vs DAFS(20)
Matthews Correlation Coefficient IPknot:
N/A
DAFS(20):
N/A
Sensitivity IPknot:
N/A
DAFS(20):
N/A
Positive Predictive Value IPknot:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Contrafold vs DAFS(20)
Matthews Correlation Coefficient Contrafold:
N/A
DAFS(20):
N/A
Sensitivity Contrafold:
N/A
DAFS(20):
N/A
Positive Predictive Value Contrafold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Carnac(20) vs DAFS(20)
Matthews Correlation Coefficient Carnac(20):
N/A
DAFS(20):
N/A
Sensitivity Carnac(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Carnac(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(20) vs DAFS(20)
Matthews Correlation Coefficient Murlet(20):
N/A
DAFS(20):
N/A
Sensitivity Murlet(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Murlet(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(20) vs DAFS(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Sfold vs DAFS(20)
Matthews Correlation Coefficient Sfold:
N/A
DAFS(20):
N/A
Sensitivity Sfold:
N/A
DAFS(20):
N/A
Positive Predictive Value Sfold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Pknots vs DAFS(20)
Matthews Correlation Coefficient Pknots:
N/A
DAFS(20):
N/A
Sensitivity Pknots:
N/A
DAFS(20):
N/A
Positive Predictive Value Pknots:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MaxExpect vs DAFS(20)
Matthews Correlation Coefficient MaxExpect:
N/A
DAFS(20):
N/A
Sensitivity MaxExpect:
N/A
DAFS(20):
N/A
Positive Predictive Value MaxExpect:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(seed) vs DAFS(20)
Matthews Correlation Coefficient TurboFold(seed):
N/A
DAFS(20):
N/A
Sensitivity TurboFold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value TurboFold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PknotsRG vs DAFS(20)
Matthews Correlation Coefficient PknotsRG:
N/A
DAFS(20):
N/A
Sensitivity PknotsRG:
N/A
DAFS(20):
N/A
Positive Predictive Value PknotsRG:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Cylofold vs DAFS(20)
Matthews Correlation Coefficient Cylofold:
N/A
DAFS(20):
N/A
Sensitivity Cylofold:
N/A
DAFS(20):
N/A
Positive Predictive Value Cylofold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidHomfold‑LAST vs DAFS(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASLOpt vs DAFS(20)
Matthews Correlation Coefficient RNASLOpt:
N/A
DAFS(20):
N/A
Sensitivity RNASLOpt:
N/A
DAFS(20):
N/A
Positive Predictive Value RNASLOpt:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
McQFold vs DAFS(20)
Matthews Correlation Coefficient McQFold:
N/A
DAFS(20):
N/A
Sensitivity McQFold:
N/A
DAFS(20):
N/A
Positive Predictive Value McQFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ProbKnot vs DAFS(20)
Matthews Correlation Coefficient ProbKnot:
N/A
DAFS(20):
N/A
Sensitivity ProbKnot:
N/A
DAFS(20):
N/A
Positive Predictive Value ProbKnot:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
UNAFold vs DAFS(20)
Matthews Correlation Coefficient UNAFold:
N/A
DAFS(20):
N/A
Sensitivity UNAFold:
N/A
DAFS(20):
N/A
Positive Predictive Value UNAFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
HotKnots vs DAFS(20)
Matthews Correlation Coefficient HotKnots:
N/A
DAFS(20):
N/A
Sensitivity HotKnots:
N/A
DAFS(20):
N/A
Positive Predictive Value HotKnots:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAshapes vs DAFS(20)
Matthews Correlation Coefficient RNAshapes:
N/A
DAFS(20):
N/A
Sensitivity RNAshapes:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAshapes:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAfold vs DAFS(20)
Matthews Correlation Coefficient RNAfold:
N/A
DAFS(20):
N/A
Sensitivity RNAfold:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAfold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Afold vs DAFS(20)
Matthews Correlation Coefficient Afold:
N/A
DAFS(20):
N/A
Sensitivity Afold:
N/A
DAFS(20):
N/A
Positive Predictive Value Afold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(20) vs DAFS(20)
Matthews Correlation Coefficient RSpredict(20):
N/A
DAFS(20):
N/A
Sensitivity RSpredict(20):
N/A
DAFS(20):
N/A
Positive Predictive Value RSpredict(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Multilign(seed) vs DAFS(20)
Matthews Correlation Coefficient Multilign(seed):
N/A
DAFS(20):
N/A
Sensitivity Multilign(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Multilign(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAsubopt vs DAFS(20)
Matthews Correlation Coefficient RNAsubopt:
N/A
DAFS(20):
N/A
Sensitivity RNAsubopt:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAsubopt:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Fold vs DAFS(20)
Matthews Correlation Coefficient Fold:
N/A
DAFS(20):
N/A
Sensitivity Fold:
N/A
DAFS(20):
N/A
Positive Predictive Value Fold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold4 vs DAFS(20)
Matthews Correlation Coefficient Vsfold4:
N/A
DAFS(20):
N/A
Sensitivity Vsfold4:
N/A
DAFS(20):
N/A
Positive Predictive Value Vsfold4:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(seed) vs DAFS(20)
Matthews Correlation Coefficient RNASampler(seed):
N/A
DAFS(20):
N/A
Sensitivity RNASampler(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RNASampler(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Multilign(20) vs DAFS(20)
Matthews Correlation Coefficient Multilign(20):
N/A
DAFS(20):
N/A
Sensitivity Multilign(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Multilign(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(20) vs DAFS(20)
Matthews Correlation Coefficient Mastr(20):
N/A
DAFS(20):
N/A
Sensitivity Mastr(20):
N/A
DAFS(20):
N/A
Positive Predictive Value Mastr(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(seed) vs DAFS(20)
Matthews Correlation Coefficient Murlet(seed):
N/A
DAFS(20):
N/A
Sensitivity Murlet(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Murlet(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold5 vs DAFS(20)
Matthews Correlation Coefficient Vsfold5:
N/A
DAFS(20):
N/A
Sensitivity Vsfold5:
N/A
DAFS(20):
N/A
Positive Predictive Value Vsfold5:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Alterna vs DAFS(20)
Matthews Correlation Coefficient Alterna:
N/A
DAFS(20):
N/A
Sensitivity Alterna:
N/A
DAFS(20):
N/A
Positive Predictive Value Alterna:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RDfolder vs DAFS(20)
Matthews Correlation Coefficient RDfolder:
N/A
DAFS(20):
N/A
Sensitivity RDfolder:
N/A
DAFS(20):
N/A
Positive Predictive Value RDfolder:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MCFold vs DAFS(20)
Matthews Correlation Coefficient MCFold:
N/A
DAFS(20):
N/A
Sensitivity MCFold:
N/A
DAFS(20):
N/A
Positive Predictive Value MCFold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAwolf vs DAFS(20)
Matthews Correlation Coefficient RNAwolf:
N/A
DAFS(20):
N/A
Sensitivity RNAwolf:
N/A
DAFS(20):
N/A
Positive Predictive Value RNAwolf:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(seed) vs DAFS(20)
Matthews Correlation Coefficient RSpredict(seed):
N/A
DAFS(20):
N/A
Sensitivity RSpredict(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value RSpredict(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Carnac(seed) vs DAFS(20)
Matthews Correlation Coefficient Carnac(seed):
N/A
DAFS(20):
N/A
Sensitivity Carnac(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Carnac(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
NanoFolder vs DAFS(20)
Matthews Correlation Coefficient NanoFolder:
N/A
DAFS(20):
N/A
Sensitivity NanoFolder:
N/A
DAFS(20):
N/A
Positive Predictive Value NanoFolder:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(seed) vs DAFS(20)
Matthews Correlation Coefficient PPfold(seed):
N/A
DAFS(20):
N/A
Sensitivity PPfold(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PPfold(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs DAFS(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
DAFS(20):
N/A
Sensitivity CMfinder(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(seed) vs DAFS(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
PETfold_2.0(20) vs DAFS(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
DAFS(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(20) vs CMfinder(20)
Matthews Correlation Coefficient DAFS(20):
N/A
CMfinder(20):
N/A
Sensitivity DAFS(20):
N/A
CMfinder(20):
N/A
Positive Predictive Value DAFS(20):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CRWrnafold vs DAFS(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
DAFS(20):
N/A
Sensitivity CRWrnafold:
N/A
DAFS(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(seed) vs DAFS(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
DAFS(20):
N/A
Sensitivity DAFS(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(seed) vs DAFS(20)
Matthews Correlation Coefficient Mastr(seed):
N/A
DAFS(20):
N/A
Sensitivity Mastr(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Mastr(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
PETfold_2.0(20) |
0
CentroidAlifold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidAlifold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidAlifold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PETfold_pre2.0(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAalifold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs MXScarna(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidFold vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient PPfold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity PPfold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PPfold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value TurboFold(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNASampler(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs MXScarna(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ContextFold vs PETfold_2.0(20)
Matthews Correlation Coefficient ContextFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity ContextFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value ContextFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs IPknot
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
IPknot:
N/A
Sensitivity PETfold_2.0(20):
N/A
IPknot:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Contrafold vs PETfold_2.0(20)
Matthews Correlation Coefficient Contrafold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Contrafold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Contrafold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Carnac(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Carnac(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Carnac(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Carnac(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Murlet(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Murlet(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Murlet(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs Sfold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Sfold:
N/A
Sensitivity PETfold_2.0(20):
N/A
Sfold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Pknots vs PETfold_2.0(20)
Matthews Correlation Coefficient Pknots:
N/A
PETfold_2.0(20):
N/A
Sensitivity Pknots:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Pknots:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MaxExpect vs PETfold_2.0(20)
Matthews Correlation Coefficient MaxExpect:
N/A
PETfold_2.0(20):
N/A
Sensitivity MaxExpect:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value MaxExpect:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value TurboFold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PknotsRG vs PETfold_2.0(20)
Matthews Correlation Coefficient PknotsRG:
N/A
PETfold_2.0(20):
N/A
Sensitivity PknotsRG:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PknotsRG:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Cylofold vs PETfold_2.0(20)
Matthews Correlation Coefficient Cylofold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Cylofold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Cylofold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidHomfold‑LAST vs PETfold_2.0(20)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs RNASLOpt
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Sensitivity PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
McQFold vs PETfold_2.0(20)
Matthews Correlation Coefficient McQFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity McQFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value McQFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ProbKnot vs PETfold_2.0(20)
Matthews Correlation Coefficient ProbKnot:
N/A
PETfold_2.0(20):
N/A
Sensitivity ProbKnot:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value ProbKnot:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
UNAFold vs PETfold_2.0(20)
Matthews Correlation Coefficient UNAFold:
N/A
PETfold_2.0(20):
N/A
Sensitivity UNAFold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value UNAFold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
HotKnots vs PETfold_2.0(20)
Matthews Correlation Coefficient HotKnots:
N/A
PETfold_2.0(20):
N/A
Sensitivity HotKnots:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value HotKnots:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAshapes vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAshapes:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAshapes:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAshapes:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs RNAfold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
RNAfold:
N/A
Sensitivity PETfold_2.0(20):
N/A
RNAfold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Afold vs PETfold_2.0(20)
Matthews Correlation Coefficient Afold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Afold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Afold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RSpredict(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Multilign(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Multilign(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAsubopt vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAsubopt:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Fold vs PETfold_2.0(20)
Matthews Correlation Coefficient Fold:
N/A
PETfold_2.0(20):
N/A
Sensitivity Fold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Fold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold4 vs PETfold_2.0(20)
Matthews Correlation Coefficient Vsfold4:
N/A
PETfold_2.0(20):
N/A
Sensitivity Vsfold4:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Vsfold4:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNASampler(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs Multilign(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Multilign(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
Multilign(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(20) vs PETfold_2.0(20)
Matthews Correlation Coefficient Mastr(20):
N/A
PETfold_2.0(20):
N/A
Sensitivity Mastr(20):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Mastr(20):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Murlet(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold5 vs PETfold_2.0(20)
Matthews Correlation Coefficient Vsfold5:
N/A
PETfold_2.0(20):
N/A
Sensitivity Vsfold5:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Vsfold5:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Alterna vs PETfold_2.0(20)
Matthews Correlation Coefficient Alterna:
N/A
PETfold_2.0(20):
N/A
Sensitivity Alterna:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Alterna:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RDfolder vs PETfold_2.0(20)
Matthews Correlation Coefficient RDfolder:
N/A
PETfold_2.0(20):
N/A
Sensitivity RDfolder:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RDfolder:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs MCFold
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
MCFold:
N/A
Sensitivity PETfold_2.0(20):
N/A
MCFold:
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAwolf vs PETfold_2.0(20)
Matthews Correlation Coefficient RNAwolf:
N/A
PETfold_2.0(20):
N/A
Sensitivity RNAwolf:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RNAwolf:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value RSpredict(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs Carnac(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
NanoFolder vs PETfold_2.0(20)
Matthews Correlation Coefficient NanoFolder:
N/A
PETfold_2.0(20):
N/A
Sensitivity NanoFolder:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value NanoFolder:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value PPfold(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CMfinder(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs PETfold_2.0(seed)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Sensitivity PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs DAFS(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
DAFS(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
DAFS(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
PETfold_2.0(20) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CRWrnafold vs PETfold_2.0(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Sensitivity CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
Mastr(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
CMfinder(20) |
5
CentroidAlifold(seed) vs CMfinder(20)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.615
CMfinder(20):
0.580
Sensitivity CentroidAlifold(seed):
0.418
CMfinder(20):
0.500
Positive Predictive Value CentroidAlifold(seed):
0.911
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CentroidAlifold(20) vs CMfinder(20)
Matthews Correlation Coefficient CentroidAlifold(20):
0.711
CMfinder(20):
0.580
Sensitivity CentroidAlifold(20):
0.633
CMfinder(20):
0.500
Positive Predictive Value CentroidAlifold(20):
0.805
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
PETfold_pre2.0(seed) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.869
CMfinder(20):
0.580
Sensitivity PETfold_pre2.0(seed):
0.857
CMfinder(20):
0.500
Positive Predictive Value PETfold_pre2.0(seed):
0.884
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
3
RNAalifold(seed) vs CMfinder(20)
Matthews Correlation Coefficient RNAalifold(seed):
0.642
CMfinder(20):
0.385
Sensitivity RNAalifold(seed):
0.414
CMfinder(20):
0.310
Positive Predictive Value RNAalifold(seed):
1.000
CMfinder(20):
0.486
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
5
RNAalifold(20) vs CMfinder(20)
Matthews Correlation Coefficient RNAalifold(20):
0.727
CMfinder(20):
0.580
Sensitivity RNAalifold(20):
0.714
CMfinder(20):
0.500
Positive Predictive Value RNAalifold(20):
0.745
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
4
MXScarna(seed) vs CMfinder(20)
Matthews Correlation Coefficient MXScarna(seed):
0.555
CMfinder(20):
0.517
Sensitivity MXScarna(seed):
0.506
CMfinder(20):
0.430
Positive Predictive Value MXScarna(seed):
0.615
CMfinder(20):
0.630
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs CentroidFold
Matthews Correlation Coefficient CMfinder(20):
0.580
CentroidFold:
0.516
Sensitivity CMfinder(20):
0.500
CentroidFold:
0.561
Positive Predictive Value CMfinder(20):
0.681
CentroidFold:
0.482
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
PPfold(20) vs CMfinder(20)
Matthews Correlation Coefficient PPfold(20):
0.682
CMfinder(20):
0.580
Sensitivity PPfold(20):
0.663
CMfinder(20):
0.500
Positive Predictive Value PPfold(20):
0.707
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
TurboFold(20) vs CMfinder(20)
Matthews Correlation Coefficient TurboFold(20):
0.656
CMfinder(20):
0.580
Sensitivity TurboFold(20):
0.714
CMfinder(20):
0.500
Positive Predictive Value TurboFold(20):
0.609
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
RNASampler(20) vs CMfinder(20)
Matthews Correlation Coefficient RNASampler(20):
0.629
CMfinder(20):
0.580
Sensitivity RNASampler(20):
0.633
CMfinder(20):
0.500
Positive Predictive Value RNASampler(20):
0.633
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
MXScarna(20) vs CMfinder(20)
Matthews Correlation Coefficient MXScarna(20):
0.657
CMfinder(20):
0.580
Sensitivity MXScarna(20):
0.653
CMfinder(20):
0.500
Positive Predictive Value MXScarna(20):
0.667
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
ContextFold vs CMfinder(20)
Matthews Correlation Coefficient ContextFold:
0.585
CMfinder(20):
0.580
Sensitivity ContextFold:
0.612
CMfinder(20):
0.500
Positive Predictive Value ContextFold:
0.566
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs IPknot
Matthews Correlation Coefficient CMfinder(20):
0.580
IPknot:
0.449
Sensitivity CMfinder(20):
0.500
IPknot:
0.490
Positive Predictive Value CMfinder(20):
0.681
IPknot:
0.421
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Contrafold
Matthews Correlation Coefficient CMfinder(20):
0.580
Contrafold:
0.498
Sensitivity CMfinder(20):
0.500
Contrafold:
0.561
Positive Predictive Value CMfinder(20):
0.681
Contrafold:
0.451
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Carnac(20) vs CMfinder(20)
Matthews Correlation Coefficient Carnac(20):
0.619
CMfinder(20):
0.580
Sensitivity Carnac(20):
0.469
CMfinder(20):
0.500
Positive Predictive Value Carnac(20):
0.821
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Murlet(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
Murlet(20):
0.522
Sensitivity CMfinder(20):
0.500
Murlet(20):
0.490
Positive Predictive Value CMfinder(20):
0.681
Murlet(20):
0.565
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
PETfold_pre2.0(20) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.722
CMfinder(20):
0.580
Sensitivity PETfold_pre2.0(20):
0.724
CMfinder(20):
0.500
Positive Predictive Value PETfold_pre2.0(20):
0.724
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Sfold
Matthews Correlation Coefficient CMfinder(20):
0.580
Sfold:
0.424
Sensitivity CMfinder(20):
0.500
Sfold:
0.449
Positive Predictive Value CMfinder(20):
0.681
Sfold:
0.411
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Pknots
Matthews Correlation Coefficient CMfinder(20):
0.580
Pknots:
0.502
Sensitivity CMfinder(20):
0.500
Pknots:
0.551
Positive Predictive Value CMfinder(20):
0.681
Pknots:
0.466
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs MaxExpect
Matthews Correlation Coefficient CMfinder(20):
0.580
MaxExpect:
0.352
Sensitivity CMfinder(20):
0.500
MaxExpect:
0.388
Positive Predictive Value CMfinder(20):
0.681
MaxExpect:
0.330
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
2
TurboFold(seed) vs CMfinder(20)
Matthews Correlation Coefficient TurboFold(seed):
0.357
CMfinder(20):
0.342
Sensitivity TurboFold(seed):
0.441
CMfinder(20):
0.324
Positive Predictive Value TurboFold(seed):
0.294
CMfinder(20):
0.367
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs PknotsRG
Matthews Correlation Coefficient CMfinder(20):
0.580
PknotsRG:
0.414
Sensitivity CMfinder(20):
0.500
PknotsRG:
0.480
Positive Predictive Value CMfinder(20):
0.681
PknotsRG:
0.367
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
2
Cylofold vs CMfinder(20)
Matthews Correlation Coefficient Cylofold:
0.838
CMfinder(20):
0.696
Sensitivity Cylofold:
0.822
CMfinder(20):
0.511
Positive Predictive Value Cylofold:
0.860
CMfinder(20):
0.958
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs CentroidHomfold‑LAST
Matthews Correlation Coefficient CMfinder(20):
0.580
CentroidHomfold‑LAST:
0.423
Sensitivity CMfinder(20):
0.500
CentroidHomfold‑LAST:
0.490
Positive Predictive Value CMfinder(20):
0.681
CentroidHomfold‑LAST:
0.375
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RNASLOpt
Matthews Correlation Coefficient CMfinder(20):
0.580
RNASLOpt:
0.542
Sensitivity CMfinder(20):
0.500
RNASLOpt:
0.582
Positive Predictive Value CMfinder(20):
0.681
RNASLOpt:
0.514
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs McQFold
Matthews Correlation Coefficient CMfinder(20):
0.580
McQFold:
0.570
Sensitivity CMfinder(20):
0.500
McQFold:
0.643
Positive Predictive Value CMfinder(20):
0.681
McQFold:
0.512
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs ProbKnot
Matthews Correlation Coefficient CMfinder(20):
0.580
ProbKnot:
0.363
Sensitivity CMfinder(20):
0.500
ProbKnot:
0.408
Positive Predictive Value CMfinder(20):
0.681
ProbKnot:
0.333
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs UNAFold
Matthews Correlation Coefficient CMfinder(20):
0.580
UNAFold:
0.343
Sensitivity CMfinder(20):
0.500
UNAFold:
0.398
Positive Predictive Value CMfinder(20):
0.681
UNAFold:
0.307
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs HotKnots
Matthews Correlation Coefficient CMfinder(20):
0.580
HotKnots:
0.346
Sensitivity CMfinder(20):
0.500
HotKnots:
0.398
Positive Predictive Value CMfinder(20):
0.681
HotKnots:
0.312
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RNAshapes
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAshapes:
0.417
Sensitivity CMfinder(20):
0.500
RNAshapes:
0.480
Positive Predictive Value CMfinder(20):
0.681
RNAshapes:
0.373
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RNAfold
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAfold:
0.363
Sensitivity CMfinder(20):
0.500
RNAfold:
0.418
Positive Predictive Value CMfinder(20):
0.681
RNAfold:
0.325
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
1
Afold vs CMfinder(20)
Matthews Correlation Coefficient Afold:
0.258
CMfinder(20):
0.145
Sensitivity Afold:
0.333
CMfinder(20):
0.133
Positive Predictive Value Afold:
0.208
CMfinder(20):
0.167
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RSpredict(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
RSpredict(20):
0.491
Sensitivity CMfinder(20):
0.500
RSpredict(20):
0.480
Positive Predictive Value CMfinder(20):
0.681
RSpredict(20):
0.511
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
1
Multilign(seed) vs CMfinder(20)
Matthews Correlation Coefficient Multilign(seed):
0.189
CMfinder(20):
0.145
Sensitivity Multilign(seed):
0.200
CMfinder(20):
0.133
Positive Predictive Value Multilign(seed):
0.188
CMfinder(20):
0.167
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RNAsubopt
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAsubopt:
0.423
Sensitivity CMfinder(20):
0.500
RNAsubopt:
0.500
Positive Predictive Value CMfinder(20):
0.681
RNAsubopt:
0.368
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Fold
Matthews Correlation Coefficient CMfinder(20):
0.580
Fold:
0.316
Sensitivity CMfinder(20):
0.500
Fold:
0.367
Positive Predictive Value CMfinder(20):
0.681
Fold:
0.283
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Vsfold4
Matthews Correlation Coefficient CMfinder(20):
0.580
Vsfold4:
0.506
Sensitivity CMfinder(20):
0.500
Vsfold4:
0.551
Positive Predictive Value CMfinder(20):
0.681
Vsfold4:
0.474
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
2
CMfinder(20) vs RNASampler(seed)
Matthews Correlation Coefficient CMfinder(20):
0.342
RNASampler(seed):
0.340
Sensitivity CMfinder(20):
0.324
RNASampler(seed):
0.353
Positive Predictive Value CMfinder(20):
0.367
RNASampler(seed):
0.333
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Multilign(20)
Matthews Correlation Coefficient CMfinder(20):
0.580
Multilign(20):
0.438
Sensitivity CMfinder(20):
0.500
Multilign(20):
0.469
Positive Predictive Value CMfinder(20):
0.681
Multilign(20):
0.418
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Mastr(20) vs CMfinder(20)
Matthews Correlation Coefficient Mastr(20):
0.590
CMfinder(20):
0.580
Sensitivity Mastr(20):
0.388
CMfinder(20):
0.500
Positive Predictive Value Mastr(20):
0.905
CMfinder(20):
0.681
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
3
CMfinder(20) vs Murlet(seed)
Matthews Correlation Coefficient CMfinder(20):
0.385
Murlet(seed):
0.341
Sensitivity CMfinder(20):
0.310
Murlet(seed):
0.207
Positive Predictive Value CMfinder(20):
0.486
Murlet(seed):
0.571
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs Vsfold5
Matthews Correlation Coefficient CMfinder(20):
0.580
Vsfold5:
0.489
Sensitivity CMfinder(20):
0.500
Vsfold5:
0.551
Positive Predictive Value CMfinder(20):
0.681
Vsfold5:
0.443
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
0
Alterna vs CMfinder(20)
Matthews Correlation Coefficient Alterna:
N/A
CMfinder(20):
N/A
Sensitivity Alterna:
N/A
CMfinder(20):
N/A
Positive Predictive Value Alterna:
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
2
CMfinder(20) vs RDfolder
Matthews Correlation Coefficient CMfinder(20):
0.826
RDfolder:
0.791
Sensitivity CMfinder(20):
0.775
RDfolder:
0.775
Positive Predictive Value CMfinder(20):
0.886
RDfolder:
0.816
Number of pairs reference - predicted secondary structure: 2
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs MCFold
Matthews Correlation Coefficient CMfinder(20):
0.580
MCFold:
0.358
Sensitivity CMfinder(20):
0.500
MCFold:
0.439
Positive Predictive Value CMfinder(20):
0.681
MCFold:
0.303
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RNAwolf
Matthews Correlation Coefficient CMfinder(20):
0.580
RNAwolf:
0.452
Sensitivity CMfinder(20):
0.500
RNAwolf:
0.500
Positive Predictive Value CMfinder(20):
0.681
RNAwolf:
0.419
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs RSpredict(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
RSpredict(seed):
0.047
Sensitivity CMfinder(20):
0.500
RSpredict(seed):
0.020
Positive Predictive Value CMfinder(20):
0.681
RSpredict(seed):
0.125
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
3
CMfinder(20) vs Carnac(seed)
Matthews Correlation Coefficient CMfinder(20):
0.385
Carnac(seed):
0.000
Sensitivity CMfinder(20):
0.310
Carnac(seed):
0.000
Positive Predictive Value CMfinder(20):
0.486
Carnac(seed):
0.000
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
3
CMfinder(20) vs NanoFolder
Matthews Correlation Coefficient CMfinder(20):
0.513
NanoFolder:
0.346
Sensitivity CMfinder(20):
0.491
NanoFolder:
0.509
Positive Predictive Value CMfinder(20):
0.542
NanoFolder:
0.243
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
5
CMfinder(20) vs PPfold(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
PPfold(seed):
0.081
Sensitivity CMfinder(20):
0.500
PPfold(seed):
0.020
Positive Predictive Value CMfinder(20):
0.681
PPfold(seed):
0.333
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
0
CMfinder(seed) vs CMfinder(20)
Matthews Correlation Coefficient CMfinder(seed):
N/A
CMfinder(20):
N/A
Sensitivity CMfinder(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value CMfinder(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(seed) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Sensitivity PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value PETfold_2.0(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(20) vs CMfinder(20)
Matthews Correlation Coefficient DAFS(20):
N/A
CMfinder(20):
N/A
Sensitivity DAFS(20):
N/A
CMfinder(20):
N/A
Positive Predictive Value DAFS(20):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_2.0(20) vs CMfinder(20)
Matthews Correlation Coefficient PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Sensitivity PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Positive Predictive Value PETfold_2.0(20):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
CRWrnafold vs CMfinder(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
CMfinder(20):
N/A
Sensitivity CRWrnafold:
N/A
CMfinder(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
DAFS(seed) vs CMfinder(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
CMfinder(20):
N/A
Sensitivity DAFS(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CMfinder(20) vs Mastr(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
Mastr(seed):
0.000
Sensitivity CMfinder(20):
0.500
Mastr(seed):
0.000
Positive Predictive Value CMfinder(20):
0.681
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
CRWrnafold |
6
CentroidAlifold(seed) vs CRWrnafold
Matthews Correlation Coefficient CentroidAlifold(seed):
0.727
CRWrnafold:
0.513
Sensitivity CentroidAlifold(seed):
0.548
CRWrnafold:
0.524
Positive Predictive Value CentroidAlifold(seed):
0.972
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
5
CentroidAlifold(20) vs CRWrnafold
Matthews Correlation Coefficient CentroidAlifold(20):
0.741
CRWrnafold:
0.592
Sensitivity CentroidAlifold(20):
0.611
CRWrnafold:
0.611
Positive Predictive Value CentroidAlifold(20):
0.904
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
PETfold_pre2.0(seed) vs CRWrnafold
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.695
CRWrnafold:
0.478
Sensitivity PETfold_pre2.0(seed):
0.619
CRWrnafold:
0.485
Positive Predictive Value PETfold_pre2.0(seed):
0.789
CRWrnafold:
0.485
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
6
RNAalifold(seed) vs CRWrnafold
Matthews Correlation Coefficient RNAalifold(seed):
0.582
CRWrnafold:
0.513
Sensitivity RNAalifold(seed):
0.437
CRWrnafold:
0.524
Positive Predictive Value RNAalifold(seed):
0.786
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
5
RNAalifold(20) vs CRWrnafold
Matthews Correlation Coefficient RNAalifold(20):
0.625
CRWrnafold:
0.592
Sensitivity RNAalifold(20):
0.565
CRWrnafold:
0.611
Positive Predictive Value RNAalifold(20):
0.701
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
6
MXScarna(seed) vs CRWrnafold
Matthews Correlation Coefficient MXScarna(seed):
0.544
CRWrnafold:
0.513
Sensitivity MXScarna(seed):
0.492
CRWrnafold:
0.524
Positive Predictive Value MXScarna(seed):
0.614
CRWrnafold:
0.516
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
CentroidFold vs CRWrnafold
Matthews Correlation Coefficient CentroidFold:
0.591
CRWrnafold:
0.502
Sensitivity CentroidFold:
0.560
CRWrnafold:
0.516
Positive Predictive Value CentroidFold:
0.636
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
5
PPfold(20) vs CRWrnafold
Matthews Correlation Coefficient PPfold(20):
0.681
CRWrnafold:
0.592
Sensitivity PPfold(20):
0.611
CRWrnafold:
0.611
Positive Predictive Value PPfold(20):
0.767
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
TurboFold(20) vs CRWrnafold
Matthews Correlation Coefficient TurboFold(20):
0.597
CRWrnafold:
0.592
Sensitivity TurboFold(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value TurboFold(20):
0.652
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
RNASampler(20) vs CRWrnafold
Matthews Correlation Coefficient RNASampler(20):
0.642
CRWrnafold:
0.592
Sensitivity RNASampler(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value RNASampler(20):
0.750
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs MXScarna(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
MXScarna(20):
0.554
Sensitivity CRWrnafold:
0.611
MXScarna(20):
0.519
Positive Predictive Value CRWrnafold:
0.584
MXScarna(20):
0.602
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
7
ContextFold vs CRWrnafold
Matthews Correlation Coefficient ContextFold:
0.662
CRWrnafold:
0.473
Sensitivity ContextFold:
0.608
CRWrnafold:
0.485
Positive Predictive Value ContextFold:
0.731
CRWrnafold:
0.477
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
8
IPknot vs CRWrnafold
Matthews Correlation Coefficient IPknot:
0.568
CRWrnafold:
0.502
Sensitivity IPknot:
0.541
CRWrnafold:
0.516
Positive Predictive Value IPknot:
0.610
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
Contrafold vs CRWrnafold
Matthews Correlation Coefficient Contrafold:
0.594
CRWrnafold:
0.502
Sensitivity Contrafold:
0.579
CRWrnafold:
0.516
Positive Predictive Value Contrafold:
0.622
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs Carnac(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Carnac(20):
0.510
Sensitivity CRWrnafold:
0.611
Carnac(20):
0.324
Positive Predictive Value CRWrnafold:
0.584
Carnac(20):
0.814
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
Murlet(20) vs CRWrnafold
Matthews Correlation Coefficient Murlet(20):
0.622
CRWrnafold:
0.592
Sensitivity Murlet(20):
0.556
CRWrnafold:
0.611
Positive Predictive Value Murlet(20):
0.706
CRWrnafold:
0.584
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
4
PETfold_pre2.0(20) vs CRWrnafold
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.619
CRWrnafold:
0.579
Sensitivity PETfold_pre2.0(20):
0.570
CRWrnafold:
0.595
Positive Predictive Value PETfold_pre2.0(20):
0.682
CRWrnafold:
0.573
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
8
Sfold vs CRWrnafold
Matthews Correlation Coefficient Sfold:
0.550
CRWrnafold:
0.502
Sensitivity Sfold:
0.535
CRWrnafold:
0.516
Positive Predictive Value Sfold:
0.578
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
Pknots vs CRWrnafold
Matthews Correlation Coefficient Pknots:
0.562
CRWrnafold:
0.502
Sensitivity Pknots:
0.585
CRWrnafold:
0.516
Positive Predictive Value Pknots:
0.554
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs MaxExpect
Matthews Correlation Coefficient CRWrnafold:
0.502
MaxExpect:
0.468
Sensitivity CRWrnafold:
0.516
MaxExpect:
0.472
Positive Predictive Value CRWrnafold:
0.503
MaxExpect:
0.481
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs TurboFold(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
TurboFold(seed):
0.496
Sensitivity CRWrnafold:
0.524
TurboFold(seed):
0.476
Positive Predictive Value CRWrnafold:
0.516
TurboFold(seed):
0.531
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
PknotsRG vs CRWrnafold
Matthews Correlation Coefficient PknotsRG:
0.586
CRWrnafold:
0.502
Sensitivity PknotsRG:
0.616
CRWrnafold:
0.516
Positive Predictive Value PknotsRG:
0.570
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
Cylofold vs CRWrnafold
Matthews Correlation Coefficient Cylofold:
0.624
CRWrnafold:
0.563
Sensitivity Cylofold:
0.619
CRWrnafold:
0.554
Positive Predictive Value Cylofold:
0.647
CRWrnafold:
0.592
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
8
CentroidHomfold‑LAST vs CRWrnafold
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.601
CRWrnafold:
0.502
Sensitivity CentroidHomfold‑LAST:
0.522
CRWrnafold:
0.516
Positive Predictive Value CentroidHomfold‑LAST:
0.703
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
7
CRWrnafold vs RNASLOpt
Matthews Correlation Coefficient CRWrnafold:
0.473
RNASLOpt:
0.449
Sensitivity CRWrnafold:
0.485
RNASLOpt:
0.438
Positive Predictive Value CRWrnafold:
0.477
RNASLOpt:
0.475
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
8
McQFold vs CRWrnafold
Matthews Correlation Coefficient McQFold:
0.657
CRWrnafold:
0.502
Sensitivity McQFold:
0.667
CRWrnafold:
0.516
Positive Predictive Value McQFold:
0.658
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs ProbKnot
Matthews Correlation Coefficient CRWrnafold:
0.502
ProbKnot:
0.480
Sensitivity CRWrnafold:
0.516
ProbKnot:
0.509
Positive Predictive Value CRWrnafold:
0.503
ProbKnot:
0.468
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs UNAFold
Matthews Correlation Coefficient CRWrnafold:
0.502
UNAFold:
0.480
Sensitivity CRWrnafold:
0.516
UNAFold:
0.497
Positive Predictive Value CRWrnafold:
0.503
UNAFold:
0.479
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
HotKnots vs CRWrnafold
Matthews Correlation Coefficient HotKnots:
0.618
CRWrnafold:
0.502
Sensitivity HotKnots:
0.654
CRWrnafold:
0.516
Positive Predictive Value HotKnots:
0.594
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
RNAshapes vs CRWrnafold
Matthews Correlation Coefficient RNAshapes:
0.526
CRWrnafold:
0.502
Sensitivity RNAshapes:
0.535
CRWrnafold:
0.516
Positive Predictive Value RNAshapes:
0.531
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
RNAfold vs CRWrnafold
Matthews Correlation Coefficient RNAfold:
0.522
CRWrnafold:
0.502
Sensitivity RNAfold:
0.535
CRWrnafold:
0.516
Positive Predictive Value RNAfold:
0.525
CRWrnafold:
0.503
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
4
Afold vs CRWrnafold
Matthews Correlation Coefficient Afold:
0.477
CRWrnafold:
0.343
Sensitivity Afold:
0.520
CRWrnafold:
0.373
Positive Predictive Value Afold:
0.448
CRWrnafold:
0.329
Number of pairs reference - predicted secondary structure: 4
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs RSpredict(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
RSpredict(20):
0.494
Sensitivity CRWrnafold:
0.611
RSpredict(20):
0.454
Positive Predictive Value CRWrnafold:
0.584
RSpredict(20):
0.551
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
3
Multilign(seed) vs CRWrnafold
Matthews Correlation Coefficient Multilign(seed):
0.540
CRWrnafold:
0.513
Sensitivity Multilign(seed):
0.500
CRWrnafold:
0.513
Positive Predictive Value Multilign(seed):
0.603
CRWrnafold:
0.534
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs RNAsubopt
Matthews Correlation Coefficient CRWrnafold:
0.502
RNAsubopt:
0.460
Sensitivity CRWrnafold:
0.516
RNAsubopt:
0.478
Positive Predictive Value CRWrnafold:
0.503
RNAsubopt:
0.458
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs Fold
Matthews Correlation Coefficient CRWrnafold:
0.502
Fold:
0.409
Sensitivity CRWrnafold:
0.516
Fold:
0.421
Positive Predictive Value CRWrnafold:
0.503
Fold:
0.414
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs Vsfold4
Matthews Correlation Coefficient CRWrnafold:
0.502
Vsfold4:
0.417
Sensitivity CRWrnafold:
0.516
Vsfold4:
0.409
Positive Predictive Value CRWrnafold:
0.503
Vsfold4:
0.442
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
3
RNASampler(seed) vs CRWrnafold
Matthews Correlation Coefficient RNASampler(seed):
0.423
CRWrnafold:
0.322
Sensitivity RNASampler(seed):
0.358
CRWrnafold:
0.358
Positive Predictive Value RNASampler(seed):
0.511
CRWrnafold:
0.304
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs Multilign(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Multilign(20):
0.510
Sensitivity CRWrnafold:
0.611
Multilign(20):
0.509
Positive Predictive Value CRWrnafold:
0.584
Multilign(20):
0.524
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs Mastr(20)
Matthews Correlation Coefficient CRWrnafold:
0.592
Mastr(20):
0.502
Sensitivity CRWrnafold:
0.611
Mastr(20):
0.361
Positive Predictive Value CRWrnafold:
0.584
Mastr(20):
0.709
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs Murlet(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Murlet(seed):
0.510
Sensitivity CRWrnafold:
0.524
Murlet(seed):
0.349
Positive Predictive Value CRWrnafold:
0.516
Murlet(seed):
0.759
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs Vsfold5
Matthews Correlation Coefficient CRWrnafold:
0.502
Vsfold5:
0.395
Sensitivity CRWrnafold:
0.516
Vsfold5:
0.403
Positive Predictive Value CRWrnafold:
0.503
Vsfold5:
0.405
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
3
Alterna vs CRWrnafold
Matthews Correlation Coefficient Alterna:
0.462
CRWrnafold:
0.394
Sensitivity Alterna:
0.448
CRWrnafold:
0.397
Positive Predictive Value Alterna:
0.500
CRWrnafold:
0.418
Number of pairs reference - predicted secondary structure: 3
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs RDfolder
Matthews Correlation Coefficient CRWrnafold:
0.580
RDfolder:
0.310
Sensitivity CRWrnafold:
0.556
RDfolder:
0.256
Positive Predictive Value CRWrnafold:
0.625
RDfolder:
0.405
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
7
CRWrnafold vs MCFold
Matthews Correlation Coefficient CRWrnafold:
0.459
MCFold:
0.434
Sensitivity CRWrnafold:
0.477
MCFold:
0.469
Positive Predictive Value CRWrnafold:
0.456
MCFold:
0.418
Number of pairs reference - predicted secondary structure: 7
Wilcoxon single-rank test P-value: 0.0
|
8
CRWrnafold vs RNAwolf
Matthews Correlation Coefficient CRWrnafold:
0.502
RNAwolf:
0.372
Sensitivity CRWrnafold:
0.516
RNAwolf:
0.377
Positive Predictive Value CRWrnafold:
0.503
RNAwolf:
0.385
Number of pairs reference - predicted secondary structure: 8
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs RSpredict(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
RSpredict(seed):
0.178
Sensitivity CRWrnafold:
0.524
RSpredict(seed):
0.095
Positive Predictive Value CRWrnafold:
0.516
RSpredict(seed):
0.353
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs Carnac(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Carnac(seed):
0.177
Sensitivity CRWrnafold:
0.524
Carnac(seed):
0.032
Positive Predictive Value CRWrnafold:
0.516
Carnac(seed):
1.000
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
5
CRWrnafold vs NanoFolder
Matthews Correlation Coefficient CRWrnafold:
0.437
NanoFolder:
0.427
Sensitivity CRWrnafold:
0.462
NanoFolder:
0.519
Positive Predictive Value CRWrnafold:
0.429
NanoFolder:
0.365
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs PPfold(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
PPfold(seed):
0.170
Sensitivity CRWrnafold:
0.524
PPfold(seed):
0.056
Positive Predictive Value CRWrnafold:
0.516
PPfold(seed):
0.538
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
0
CRWrnafold vs CMfinder(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
CMfinder(seed):
N/A
Sensitivity CRWrnafold:
N/A
CMfinder(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CRWrnafold vs PETfold_2.0(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Sensitivity CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CRWrnafold vs DAFS(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
DAFS(20):
N/A
Sensitivity CRWrnafold:
N/A
DAFS(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CRWrnafold vs PETfold_2.0(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Sensitivity CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CRWrnafold vs CMfinder(20)
Matthews Correlation Coefficient CRWrnafold:
N/A
CMfinder(20):
N/A
Sensitivity CRWrnafold:
N/A
CMfinder(20):
N/A
Positive Predictive Value CRWrnafold:
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
CRWrnafold vs DAFS(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
DAFS(seed):
N/A
Sensitivity CRWrnafold:
N/A
DAFS(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
?
CRWrnafold vs Mastr(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Mastr(seed):
0.000
Sensitivity CRWrnafold:
0.524
Mastr(seed):
0.000
Positive Predictive Value CRWrnafold:
0.516
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
DAFS(seed) |
0
CentroidAlifold(seed) vs DAFS(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Sensitivity CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value CentroidAlifold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs CentroidAlifold(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Sensitivity DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
CentroidAlifold(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs PETfold_pre2.0(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_pre2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(seed) vs DAFS(seed)
Matthews Correlation Coefficient RNAalifold(seed):
N/A
DAFS(seed):
N/A
Sensitivity RNAalifold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNAalifold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNAalifold(20) vs DAFS(seed)
Matthews Correlation Coefficient RNAalifold(20):
N/A
DAFS(seed):
N/A
Sensitivity RNAalifold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNAalifold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs MXScarna(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
MXScarna(seed):
N/A
Sensitivity DAFS(seed):
N/A
MXScarna(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
MXScarna(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs CentroidFold
Matthews Correlation Coefficient DAFS(seed):
N/A
CentroidFold:
N/A
Sensitivity DAFS(seed):
N/A
CentroidFold:
N/A
Positive Predictive Value DAFS(seed):
N/A
CentroidFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(20) vs DAFS(seed)
Matthews Correlation Coefficient PPfold(20):
N/A
DAFS(seed):
N/A
Sensitivity PPfold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value PPfold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(20) vs DAFS(seed)
Matthews Correlation Coefficient TurboFold(20):
N/A
DAFS(seed):
N/A
Sensitivity TurboFold(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value TurboFold(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(20) vs DAFS(seed)
Matthews Correlation Coefficient RNASampler(20):
N/A
DAFS(seed):
N/A
Sensitivity RNASampler(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNASampler(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs MXScarna(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
MXScarna(20):
N/A
Sensitivity DAFS(seed):
N/A
MXScarna(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
MXScarna(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ContextFold vs DAFS(seed)
Matthews Correlation Coefficient ContextFold:
N/A
DAFS(seed):
N/A
Sensitivity ContextFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value ContextFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs IPknot
Matthews Correlation Coefficient DAFS(seed):
N/A
IPknot:
N/A
Sensitivity DAFS(seed):
N/A
IPknot:
N/A
Positive Predictive Value DAFS(seed):
N/A
IPknot:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Contrafold
Matthews Correlation Coefficient DAFS(seed):
N/A
Contrafold:
N/A
Sensitivity DAFS(seed):
N/A
Contrafold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Contrafold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Carnac(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
Carnac(20):
N/A
Sensitivity DAFS(seed):
N/A
Carnac(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
Carnac(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Murlet(20) vs DAFS(seed)
Matthews Correlation Coefficient Murlet(20):
N/A
DAFS(seed):
N/A
Sensitivity Murlet(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value Murlet(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PETfold_pre2.0(20) vs DAFS(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Sensitivity PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value PETfold_pre2.0(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Sfold
Matthews Correlation Coefficient DAFS(seed):
N/A
Sfold:
N/A
Sensitivity DAFS(seed):
N/A
Sfold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Sfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Pknots vs DAFS(seed)
Matthews Correlation Coefficient Pknots:
N/A
DAFS(seed):
N/A
Sensitivity Pknots:
N/A
DAFS(seed):
N/A
Positive Predictive Value Pknots:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
MaxExpect vs DAFS(seed)
Matthews Correlation Coefficient MaxExpect:
N/A
DAFS(seed):
N/A
Sensitivity MaxExpect:
N/A
DAFS(seed):
N/A
Positive Predictive Value MaxExpect:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
TurboFold(seed) vs DAFS(seed)
Matthews Correlation Coefficient TurboFold(seed):
N/A
DAFS(seed):
N/A
Sensitivity TurboFold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value TurboFold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PknotsRG vs DAFS(seed)
Matthews Correlation Coefficient PknotsRG:
N/A
DAFS(seed):
N/A
Sensitivity PknotsRG:
N/A
DAFS(seed):
N/A
Positive Predictive Value PknotsRG:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Cylofold vs DAFS(seed)
Matthews Correlation Coefficient Cylofold:
N/A
DAFS(seed):
N/A
Sensitivity Cylofold:
N/A
DAFS(seed):
N/A
Positive Predictive Value Cylofold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CentroidHomfold‑LAST vs DAFS(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Sensitivity CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Positive Predictive Value CentroidHomfold‑LAST:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs RNASLOpt
Matthews Correlation Coefficient DAFS(seed):
N/A
RNASLOpt:
N/A
Sensitivity DAFS(seed):
N/A
RNASLOpt:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNASLOpt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
McQFold vs DAFS(seed)
Matthews Correlation Coefficient McQFold:
N/A
DAFS(seed):
N/A
Sensitivity McQFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value McQFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
ProbKnot vs DAFS(seed)
Matthews Correlation Coefficient ProbKnot:
N/A
DAFS(seed):
N/A
Sensitivity ProbKnot:
N/A
DAFS(seed):
N/A
Positive Predictive Value ProbKnot:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
UNAFold vs DAFS(seed)
Matthews Correlation Coefficient UNAFold:
N/A
DAFS(seed):
N/A
Sensitivity UNAFold:
N/A
DAFS(seed):
N/A
Positive Predictive Value UNAFold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
HotKnots vs DAFS(seed)
Matthews Correlation Coefficient HotKnots:
N/A
DAFS(seed):
N/A
Sensitivity HotKnots:
N/A
DAFS(seed):
N/A
Positive Predictive Value HotKnots:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs RNAshapes
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAshapes:
N/A
Sensitivity DAFS(seed):
N/A
RNAshapes:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAshapes:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs RNAfold
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAfold:
N/A
Sensitivity DAFS(seed):
N/A
RNAfold:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAfold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Afold
Matthews Correlation Coefficient DAFS(seed):
N/A
Afold:
N/A
Sensitivity DAFS(seed):
N/A
Afold:
N/A
Positive Predictive Value DAFS(seed):
N/A
Afold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(20) vs DAFS(seed)
Matthews Correlation Coefficient RSpredict(20):
N/A
DAFS(seed):
N/A
Sensitivity RSpredict(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value RSpredict(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Multilign(seed) vs DAFS(seed)
Matthews Correlation Coefficient Multilign(seed):
N/A
DAFS(seed):
N/A
Sensitivity Multilign(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value Multilign(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs RNAsubopt
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAsubopt:
N/A
Sensitivity DAFS(seed):
N/A
RNAsubopt:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAsubopt:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Fold vs DAFS(seed)
Matthews Correlation Coefficient Fold:
N/A
DAFS(seed):
N/A
Sensitivity Fold:
N/A
DAFS(seed):
N/A
Positive Predictive Value Fold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold4 vs DAFS(seed)
Matthews Correlation Coefficient Vsfold4:
N/A
DAFS(seed):
N/A
Sensitivity Vsfold4:
N/A
DAFS(seed):
N/A
Positive Predictive Value Vsfold4:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RNASampler(seed) vs DAFS(seed)
Matthews Correlation Coefficient RNASampler(seed):
N/A
DAFS(seed):
N/A
Sensitivity RNASampler(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RNASampler(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Multilign(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
Multilign(20):
N/A
Sensitivity DAFS(seed):
N/A
Multilign(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
Multilign(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(20) vs DAFS(seed)
Matthews Correlation Coefficient Mastr(20):
N/A
DAFS(seed):
N/A
Sensitivity Mastr(20):
N/A
DAFS(seed):
N/A
Positive Predictive Value Mastr(20):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Murlet(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
Murlet(seed):
N/A
Sensitivity DAFS(seed):
N/A
Murlet(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
Murlet(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Vsfold5 vs DAFS(seed)
Matthews Correlation Coefficient Vsfold5:
N/A
DAFS(seed):
N/A
Sensitivity Vsfold5:
N/A
DAFS(seed):
N/A
Positive Predictive Value Vsfold5:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Alterna
Matthews Correlation Coefficient DAFS(seed):
N/A
Alterna:
N/A
Sensitivity DAFS(seed):
N/A
Alterna:
N/A
Positive Predictive Value DAFS(seed):
N/A
Alterna:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RDfolder vs DAFS(seed)
Matthews Correlation Coefficient RDfolder:
N/A
DAFS(seed):
N/A
Sensitivity RDfolder:
N/A
DAFS(seed):
N/A
Positive Predictive Value RDfolder:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs MCFold
Matthews Correlation Coefficient DAFS(seed):
N/A
MCFold:
N/A
Sensitivity DAFS(seed):
N/A
MCFold:
N/A
Positive Predictive Value DAFS(seed):
N/A
MCFold:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs RNAwolf
Matthews Correlation Coefficient DAFS(seed):
N/A
RNAwolf:
N/A
Sensitivity DAFS(seed):
N/A
RNAwolf:
N/A
Positive Predictive Value DAFS(seed):
N/A
RNAwolf:
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
RSpredict(seed) vs DAFS(seed)
Matthews Correlation Coefficient RSpredict(seed):
N/A
DAFS(seed):
N/A
Sensitivity RSpredict(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value RSpredict(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs Carnac(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
Carnac(seed):
N/A
Sensitivity DAFS(seed):
N/A
Carnac(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
Carnac(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
NanoFolder vs DAFS(seed)
Matthews Correlation Coefficient NanoFolder:
N/A
DAFS(seed):
N/A
Sensitivity NanoFolder:
N/A
DAFS(seed):
N/A
Positive Predictive Value NanoFolder:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
PPfold(seed) vs DAFS(seed)
Matthews Correlation Coefficient PPfold(seed):
N/A
DAFS(seed):
N/A
Sensitivity PPfold(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value PPfold(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs CMfinder(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
CMfinder(seed):
N/A
Sensitivity DAFS(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs PETfold_2.0(seed)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_2.0(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs DAFS(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
DAFS(20):
N/A
Sensitivity DAFS(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
DAFS(seed) vs CMfinder(20)
Matthews Correlation Coefficient DAFS(seed):
N/A
CMfinder(20):
N/A
Sensitivity DAFS(seed):
N/A
CMfinder(20):
N/A
Positive Predictive Value DAFS(seed):
N/A
CMfinder(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
CRWrnafold vs DAFS(seed)
Matthews Correlation Coefficient CRWrnafold:
N/A
DAFS(seed):
N/A
Sensitivity CRWrnafold:
N/A
DAFS(seed):
N/A
Positive Predictive Value CRWrnafold:
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|
?
Mastr(seed) vs DAFS(seed)
Matthews Correlation Coefficient Mastr(seed):
N/A
DAFS(seed):
N/A
Sensitivity Mastr(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value Mastr(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
Mastr(seed) |
29
CentroidAlifold(seed) vs Mastr(seed)
Matthews Correlation Coefficient CentroidAlifold(seed):
0.724
Mastr(seed):
0.036
Sensitivity CentroidAlifold(seed):
0.584
Mastr(seed):
0.004
Positive Predictive Value CentroidAlifold(seed):
0.900
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
21
CentroidAlifold(20) vs Mastr(seed)
Matthews Correlation Coefficient CentroidAlifold(20):
0.772
Mastr(seed):
0.000
Sensitivity CentroidAlifold(20):
0.664
Mastr(seed):
0.000
Positive Predictive Value CentroidAlifold(20):
0.900
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 4.94031556815e-08
|
15
PETfold_pre2.0(seed) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_pre2.0(seed):
0.789
Mastr(seed):
0.056
Sensitivity PETfold_pre2.0(seed):
0.726
Mastr(seed):
0.009
Positive Predictive Value PETfold_pre2.0(seed):
0.861
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.69132796717e-08
|
24
RNAalifold(seed) vs Mastr(seed)
Matthews Correlation Coefficient RNAalifold(seed):
0.644
Mastr(seed):
0.039
Sensitivity RNAalifold(seed):
0.478
Mastr(seed):
0.004
Positive Predictive Value RNAalifold(seed):
0.874
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 24
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
RNAalifold(20) vs Mastr(seed)
Matthews Correlation Coefficient RNAalifold(20):
0.733
Mastr(seed):
0.000
Sensitivity RNAalifold(20):
0.654
Mastr(seed):
0.000
Positive Predictive Value RNAalifold(20):
0.826
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
28
MXScarna(seed) vs Mastr(seed)
Matthews Correlation Coefficient MXScarna(seed):
0.687
Mastr(seed):
0.037
Sensitivity MXScarna(seed):
0.636
Mastr(seed):
0.004
Positive Predictive Value MXScarna(seed):
0.748
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 28
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
29
CentroidFold vs Mastr(seed)
Matthews Correlation Coefficient CentroidFold:
0.679
Mastr(seed):
0.036
Sensitivity CentroidFold:
0.675
Mastr(seed):
0.004
Positive Predictive Value CentroidFold:
0.689
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
12
PPfold(20) vs Mastr(seed)
Matthews Correlation Coefficient PPfold(20):
0.668
Mastr(seed):
0.000
Sensitivity PPfold(20):
0.614
Mastr(seed):
0.000
Positive Predictive Value PPfold(20):
0.733
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.06323189071e-08
|
12
TurboFold(20) vs Mastr(seed)
Matthews Correlation Coefficient TurboFold(20):
0.636
Mastr(seed):
0.000
Sensitivity TurboFold(20):
0.629
Mastr(seed):
0.000
Positive Predictive Value TurboFold(20):
0.649
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.18011954625e-08
|
21
RNASampler(20) vs Mastr(seed)
Matthews Correlation Coefficient RNASampler(20):
0.692
Mastr(seed):
0.000
Sensitivity RNASampler(20):
0.621
Mastr(seed):
0.000
Positive Predictive Value RNASampler(20):
0.776
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.06544643719e-08
|
21
MXScarna(20) vs Mastr(seed)
Matthews Correlation Coefficient MXScarna(20):
0.678
Mastr(seed):
0.000
Sensitivity MXScarna(20):
0.640
Mastr(seed):
0.000
Positive Predictive Value MXScarna(20):
0.724
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
15
ContextFold vs Mastr(seed)
Matthews Correlation Coefficient ContextFold:
0.611
Mastr(seed):
0.056
Sensitivity ContextFold:
0.588
Mastr(seed):
0.009
Positive Predictive Value ContextFold:
0.643
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.84041289224e-08
|
17
IPknot vs Mastr(seed)
Matthews Correlation Coefficient IPknot:
0.644
Mastr(seed):
0.052
Sensitivity IPknot:
0.623
Mastr(seed):
0.008
Positive Predictive Value IPknot:
0.673
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.94377603181e-08
|
29
Contrafold vs Mastr(seed)
Matthews Correlation Coefficient Contrafold:
0.634
Mastr(seed):
0.036
Sensitivity Contrafold:
0.658
Mastr(seed):
0.004
Positive Predictive Value Contrafold:
0.618
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
Carnac(20) vs Mastr(seed)
Matthews Correlation Coefficient Carnac(20):
0.641
Mastr(seed):
0.000
Sensitivity Carnac(20):
0.456
Mastr(seed):
0.000
Positive Predictive Value Carnac(20):
0.908
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
21
Murlet(20) vs Mastr(seed)
Matthews Correlation Coefficient Murlet(20):
0.625
Mastr(seed):
0.000
Sensitivity Murlet(20):
0.530
Mastr(seed):
0.000
Positive Predictive Value Murlet(20):
0.744
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
10
PETfold_pre2.0(20) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_pre2.0(20):
0.622
Mastr(seed):
0.000
Sensitivity PETfold_pre2.0(20):
0.597
Mastr(seed):
0.000
Positive Predictive Value PETfold_pre2.0(20):
0.654
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.61358433984e-08
|
29
Sfold vs Mastr(seed)
Matthews Correlation Coefficient Sfold:
0.620
Mastr(seed):
0.036
Sensitivity Sfold:
0.609
Mastr(seed):
0.004
Positive Predictive Value Sfold:
0.637
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
27
Pknots vs Mastr(seed)
Matthews Correlation Coefficient Pknots:
0.659
Mastr(seed):
0.040
Sensitivity Pknots:
0.690
Mastr(seed):
0.004
Positive Predictive Value Pknots:
0.638
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
27
MaxExpect vs Mastr(seed)
Matthews Correlation Coefficient MaxExpect:
0.592
Mastr(seed):
0.038
Sensitivity MaxExpect:
0.607
Mastr(seed):
0.004
Positive Predictive Value MaxExpect:
0.583
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
13
TurboFold(seed) vs Mastr(seed)
Matthews Correlation Coefficient TurboFold(seed):
0.610
Mastr(seed):
0.060
Sensitivity TurboFold(seed):
0.598
Mastr(seed):
0.010
Positive Predictive Value TurboFold(seed):
0.630
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 13
Wilcoxon single-rank test P-value: 2.50323628132e-08
|
29
PknotsRG vs Mastr(seed)
Matthews Correlation Coefficient PknotsRG:
0.610
Mastr(seed):
0.036
Sensitivity PknotsRG:
0.653
Mastr(seed):
0.004
Positive Predictive Value PknotsRG:
0.577
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
12
Cylofold vs Mastr(seed)
Matthews Correlation Coefficient Cylofold:
0.677
Mastr(seed):
0.000
Sensitivity Cylofold:
0.646
Mastr(seed):
0.000
Positive Predictive Value Cylofold:
0.718
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 1.84361416392e-08
|
15
CentroidHomfold‑LAST vs Mastr(seed)
Matthews Correlation Coefficient CentroidHomfold‑LAST:
0.579
Mastr(seed):
0.057
Sensitivity CentroidHomfold‑LAST:
0.583
Mastr(seed):
0.009
Positive Predictive Value CentroidHomfold‑LAST:
0.586
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 1.74172190343e-08
|
15
RNASLOpt vs Mastr(seed)
Matthews Correlation Coefficient RNASLOpt:
0.562
Mastr(seed):
0.056
Sensitivity RNASLOpt:
0.559
Mastr(seed):
0.009
Positive Predictive Value RNASLOpt:
0.576
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 15
Wilcoxon single-rank test P-value: 2.34821445183e-08
|
29
McQFold vs Mastr(seed)
Matthews Correlation Coefficient McQFold:
0.615
Mastr(seed):
0.036
Sensitivity McQFold:
0.641
Mastr(seed):
0.004
Positive Predictive Value McQFold:
0.597
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
22
ProbKnot vs Mastr(seed)
Matthews Correlation Coefficient ProbKnot:
0.562
Mastr(seed):
0.041
Sensitivity ProbKnot:
0.605
Mastr(seed):
0.005
Positive Predictive Value ProbKnot:
0.528
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
29
UNAFold vs Mastr(seed)
Matthews Correlation Coefficient UNAFold:
0.580
Mastr(seed):
0.036
Sensitivity UNAFold:
0.609
Mastr(seed):
0.004
Positive Predictive Value UNAFold:
0.560
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
29
HotKnots vs Mastr(seed)
Matthews Correlation Coefficient HotKnots:
0.575
Mastr(seed):
0.036
Sensitivity HotKnots:
0.620
Mastr(seed):
0.004
Positive Predictive Value HotKnots:
0.541
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
29
RNAshapes vs Mastr(seed)
Matthews Correlation Coefficient RNAshapes:
0.579
Mastr(seed):
0.036
Sensitivity RNAshapes:
0.606
Mastr(seed):
0.004
Positive Predictive Value RNAshapes:
0.560
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
29
RNAfold vs Mastr(seed)
Matthews Correlation Coefficient RNAfold:
0.589
Mastr(seed):
0.036
Sensitivity RNAfold:
0.625
Mastr(seed):
0.004
Positive Predictive Value RNAfold:
0.562
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.19332990918e-08
|
16
Afold vs Mastr(seed)
Matthews Correlation Coefficient Afold:
0.539
Mastr(seed):
0.000
Sensitivity Afold:
0.585
Mastr(seed):
0.000
Positive Predictive Value Afold:
0.504
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.66715895098e-08
|
21
RSpredict(20) vs Mastr(seed)
Matthews Correlation Coefficient RSpredict(20):
0.585
Mastr(seed):
0.000
Sensitivity RSpredict(20):
0.534
Mastr(seed):
0.000
Positive Predictive Value RSpredict(20):
0.649
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
10
Multilign(seed) vs Mastr(seed)
Matthews Correlation Coefficient Multilign(seed):
0.658
Mastr(seed):
0.064
Sensitivity Multilign(seed):
0.608
Mastr(seed):
0.012
Positive Predictive Value Multilign(seed):
0.721
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 9.64686604905e-09
|
29
RNAsubopt vs Mastr(seed)
Matthews Correlation Coefficient RNAsubopt:
0.573
Mastr(seed):
0.036
Sensitivity RNAsubopt:
0.610
Mastr(seed):
0.004
Positive Predictive Value RNAsubopt:
0.546
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
22
Fold vs Mastr(seed)
Matthews Correlation Coefficient Fold:
0.529
Mastr(seed):
0.041
Sensitivity Fold:
0.569
Mastr(seed):
0.005
Positive Predictive Value Fold:
0.499
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
26
Vsfold4 vs Mastr(seed)
Matthews Correlation Coefficient Vsfold4:
0.542
Mastr(seed):
0.039
Sensitivity Vsfold4:
0.545
Mastr(seed):
0.004
Positive Predictive Value Vsfold4:
0.546
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 26
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
12
RNASampler(seed) vs Mastr(seed)
Matthews Correlation Coefficient RNASampler(seed):
0.563
Mastr(seed):
0.061
Sensitivity RNASampler(seed):
0.472
Mastr(seed):
0.010
Positive Predictive Value RNASampler(seed):
0.678
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 12
Wilcoxon single-rank test P-value: 2.36983135185e-08
|
11
Multilign(20) vs Mastr(seed)
Matthews Correlation Coefficient Multilign(20):
0.517
Mastr(seed):
0.000
Sensitivity Multilign(20):
0.530
Mastr(seed):
0.000
Positive Predictive Value Multilign(20):
0.515
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 11
Wilcoxon single-rank test P-value: 4.38080110441e-09
|
21
Mastr(20) vs Mastr(seed)
Matthews Correlation Coefficient Mastr(20):
0.508
Mastr(seed):
0.000
Sensitivity Mastr(20):
0.329
Mastr(seed):
0.000
Positive Predictive Value Mastr(20):
0.793
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 21
Wilcoxon single-rank test P-value: 5.10776592382e-08
|
22
Murlet(seed) vs Mastr(seed)
Matthews Correlation Coefficient Murlet(seed):
0.534
Mastr(seed):
0.043
Sensitivity Murlet(seed):
0.349
Mastr(seed):
0.005
Positive Predictive Value Murlet(seed):
0.828
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 5.02343278931e-08
|
27
Vsfold5 vs Mastr(seed)
Matthews Correlation Coefficient Vsfold5:
0.514
Mastr(seed):
0.038
Sensitivity Vsfold5:
0.521
Mastr(seed):
0.004
Positive Predictive Value Vsfold5:
0.516
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 27
Wilcoxon single-rank test P-value: 3.56938820447e-08
|
10
Alterna vs Mastr(seed)
Matthews Correlation Coefficient Alterna:
0.657
Mastr(seed):
0.000
Sensitivity Alterna:
0.651
Mastr(seed):
0.000
Positive Predictive Value Alterna:
0.677
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 10
Wilcoxon single-rank test P-value: 1.30295446166e-08
|
16
RDfolder vs Mastr(seed)
Matthews Correlation Coefficient RDfolder:
0.594
Mastr(seed):
0.000
Sensitivity RDfolder:
0.544
Mastr(seed):
0.000
Positive Predictive Value RDfolder:
0.666
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 16
Wilcoxon single-rank test P-value: 2.8150742666e-08
|
23
MCFold vs Mastr(seed)
Matthews Correlation Coefficient MCFold:
0.483
Mastr(seed):
0.044
Sensitivity MCFold:
0.530
Mastr(seed):
0.006
Positive Predictive Value MCFold:
0.452
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 23
Wilcoxon single-rank test P-value: 5.1503931209e-08
|
17
RNAwolf vs Mastr(seed)
Matthews Correlation Coefficient RNAwolf:
0.450
Mastr(seed):
0.052
Sensitivity RNAwolf:
0.463
Mastr(seed):
0.008
Positive Predictive Value RNAwolf:
0.449
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 2.78993384543e-08
|
29
RSpredict(seed) vs Mastr(seed)
Matthews Correlation Coefficient RSpredict(seed):
0.292
Mastr(seed):
0.036
Sensitivity RSpredict(seed):
0.158
Mastr(seed):
0.004
Positive Predictive Value RSpredict(seed):
0.551
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 29
Wilcoxon single-rank test P-value: 5.23657817852e-08
|
22
Carnac(seed) vs Mastr(seed)
Matthews Correlation Coefficient Carnac(seed):
0.200
Mastr(seed):
0.043
Sensitivity Carnac(seed):
0.040
Mastr(seed):
0.005
Positive Predictive Value Carnac(seed):
1.000
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 22
Wilcoxon single-rank test P-value: 7.25173280392e-08
|
9
NanoFolder vs Mastr(seed)
Matthews Correlation Coefficient NanoFolder:
0.340
Mastr(seed):
0.075
Sensitivity NanoFolder:
0.438
Mastr(seed):
0.016
Positive Predictive Value NanoFolder:
0.277
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 9
Wilcoxon single-rank test P-value: 0.0
|
17
PPfold(seed) vs Mastr(seed)
Matthews Correlation Coefficient PPfold(seed):
0.202
Mastr(seed):
0.052
Sensitivity PPfold(seed):
0.066
Mastr(seed):
0.008
Positive Predictive Value PPfold(seed):
0.634
Mastr(seed):
0.375
Number of pairs reference - predicted secondary structure: 17
Wilcoxon single-rank test P-value: 3.10499527239e-08
|
0
Mastr(seed) vs CMfinder(seed)
Matthews Correlation Coefficient Mastr(seed):
N/A
CMfinder(seed):
N/A
Sensitivity Mastr(seed):
N/A
CMfinder(seed):
N/A
Positive Predictive Value Mastr(seed):
N/A
CMfinder(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
1
PETfold_2.0(seed) vs Mastr(seed)
Matthews Correlation Coefficient PETfold_2.0(seed):
0.831
Mastr(seed):
0.000
Sensitivity PETfold_2.0(seed):
0.806
Mastr(seed):
0.000
Positive Predictive Value PETfold_2.0(seed):
0.862
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 1
Wilcoxon single-rank test P-value: 0.0
|
0
Mastr(seed) vs DAFS(20)
Matthews Correlation Coefficient Mastr(seed):
N/A
DAFS(20):
N/A
Sensitivity Mastr(seed):
N/A
DAFS(20):
N/A
Positive Predictive Value Mastr(seed):
N/A
DAFS(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
0
Mastr(seed) vs PETfold_2.0(20)
Matthews Correlation Coefficient Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Sensitivity Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Positive Predictive Value Mastr(seed):
N/A
PETfold_2.0(20):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
5
CMfinder(20) vs Mastr(seed)
Matthews Correlation Coefficient CMfinder(20):
0.580
Mastr(seed):
0.000
Sensitivity CMfinder(20):
0.500
Mastr(seed):
0.000
Positive Predictive Value CMfinder(20):
0.681
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 5
Wilcoxon single-rank test P-value: 0.0
|
6
CRWrnafold vs Mastr(seed)
Matthews Correlation Coefficient CRWrnafold:
0.513
Mastr(seed):
0.000
Sensitivity CRWrnafold:
0.524
Mastr(seed):
0.000
Positive Predictive Value CRWrnafold:
0.516
Mastr(seed):
0.000
Number of pairs reference - predicted secondary structure: 6
Wilcoxon single-rank test P-value: 0.0
|
0
Mastr(seed) vs DAFS(seed)
Matthews Correlation Coefficient Mastr(seed):
N/A
DAFS(seed):
N/A
Sensitivity Mastr(seed):
N/A
DAFS(seed):
N/A
Positive Predictive Value Mastr(seed):
N/A
DAFS(seed):
N/A
Number of pairs reference - predicted secondary structure: 0
Wilcoxon single-rank test P-value: N/A
|
|